RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3987
         (175 letters)



>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch
           repeat, LNR, heterodimerization domain, HD, activator,
           ANK repeat, calcium; 3.20A {Homo sapiens}
          Length = 220

 Score = 31.0 bits (69), Expect = 0.13
 Identities = 19/110 (17%), Positives = 22/110 (20%), Gaps = 3/110 (2%)

Query: 3   CGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVC 62
           C    CQ   G  VC   C    C    G            C        C        C
Sbjct: 5   CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSL---QCWKYFSDGHC 61

Query: 63  QSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCG 112
            S C +A C                +    C        C      + C 
Sbjct: 62  DSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECE 111



 Score = 31.0 bits (69), Expect = 0.13
 Identities = 19/110 (17%), Positives = 22/110 (20%), Gaps = 3/110 (2%)

Query: 12  CGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVC 71
           C    CQ   G  VC   C    C    G            C        C        C
Sbjct: 5   CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSL---QCWKYFSDGHC 61

Query: 72  QSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCG 121
            S C +A C                +    C        C      + C 
Sbjct: 62  DSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECE 111



 Score = 31.0 bits (69), Expect = 0.13
 Identities = 19/110 (17%), Positives = 22/110 (20%), Gaps = 3/110 (2%)

Query: 21  CGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVC 80
           C    CQ   G  VC   C    C    G            C        C        C
Sbjct: 5   CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSL---QCWKYFSDGHC 61

Query: 81  QSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCG 130
            S C +A C                +    C        C      + C 
Sbjct: 62  DSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECE 111



 Score = 31.0 bits (69), Expect = 0.13
 Identities = 19/110 (17%), Positives = 22/110 (20%), Gaps = 3/110 (2%)

Query: 30  CGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVC 89
           C    CQ   G  VC   C    C    G            C        C        C
Sbjct: 5   CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSL---QCWKYFSDGHC 61

Query: 90  QSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCG 139
            S C +A C                +    C        C      + C 
Sbjct: 62  DSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECE 111



 Score = 31.0 bits (69), Expect = 0.13
 Identities = 19/110 (17%), Positives = 22/110 (20%), Gaps = 3/110 (2%)

Query: 39  CGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVC 98
           C    CQ   G  VC   C    C    G            C        C        C
Sbjct: 5   CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSL---QCWKYFSDGHC 61

Query: 99  QSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCG 148
            S C +A C                +    C        C      + C 
Sbjct: 62  DSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECE 111



 Score = 31.0 bits (69), Expect = 0.13
 Identities = 19/110 (17%), Positives = 22/110 (20%), Gaps = 3/110 (2%)

Query: 48  CGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVC 107
           C    CQ   G  VC   C    C    G            C        C        C
Sbjct: 5   CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSL---QCWKYFSDGHC 61

Query: 108 QSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCG 157
            S C +A C                +    C        C      + C 
Sbjct: 62  DSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECE 111



 Score = 29.4 bits (65), Expect = 0.50
 Identities = 18/100 (18%), Positives = 20/100 (20%), Gaps = 3/100 (3%)

Query: 66  CGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVC 125
           C    CQ   G  VC   C    C    G            C        C        C
Sbjct: 5   CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSL---QCWKYFSDGHC 61

Query: 126 QSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVC 165
            S C +A C                +    C        C
Sbjct: 62  DSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHC 101


>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
           domain, LNR repeat, calcium-binding, domain,
           autoinhibition, activator, T-all; 2.00A {Homo sapiens}
           PDB: 3l95_X* 3i08_B 1pb5_A
          Length = 242

 Score = 26.3 bits (57), Expect = 6.4
 Identities = 18/100 (18%), Positives = 20/100 (20%), Gaps = 3/100 (3%)

Query: 3   CGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVC 62
           C    CQ   G  VC   C    C    G            C        C        C
Sbjct: 5   CELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSL---QCWKYFSDGHC 61

Query: 63  QSVCGTAVCQSVCGTAVCQSVCGTAVCQSVCGTAVCQSVC 102
            S C +A C                +    C        C
Sbjct: 62  DSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHC 101


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.128    0.461 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,429,500
Number of extensions: 159209
Number of successful extensions: 1700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 228
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.0 bits)