BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3988
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 40/172 (23%)
Query: 28 CGEHFQSFQMSYDHYHGYISLFVC--IFGIV-ANTLN-IIVLTRKEMRSPTNSILTGLAI 83
CG S S H Y +L C I IV N L + VL + +++ TN ++ LA+
Sbjct: 24 CGAE-NSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAV 82
Query: 84 ADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVL---A 140
ADLLV +P+ ++L + W NFS++C + + L V++ +
Sbjct: 83 ADLLVATLVMPWVVYLEVTGGV--------W--------NFSRICCDVFVTLDVMMCTAS 126
Query: 141 IW--------RYIAVVYPQHNR--------QWCTMKTTTVTILVGYIVCPLL 176
IW RY AVV P H + + + T V +L + CPLL
Sbjct: 127 IWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLL 178
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +M K F
Sbjct: 56 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNF 112
Query: 114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVC 173
W F ++ +C T SI+ V+A+ RY A+ P + T V IL+ +IV
Sbjct: 113 WCEF---WTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 169
Query: 174 PLLC-LPI 180
L LPI
Sbjct: 170 GLTSFLPI 177
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +I+ K+
Sbjct: 197 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILTKT-------- 247
Query: 114 WTM---FVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGY 170
WT + F ++ +C T SI V+A+ RY A+ P + T V IL+ +
Sbjct: 248 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 307
Query: 171 IVCPLLC-LPI 180
IV L LPI
Sbjct: 308 IVSGLTSFLPI 318
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +M K F
Sbjct: 49 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNF 105
Query: 114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVC 173
W F ++ +C T SI V+A+ RY A+ P + T V IL+ +IV
Sbjct: 106 WCEF---WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 162
Query: 174 PLLC-LPI 180
L LPI
Sbjct: 163 GLTSFLPI 170
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +M K F
Sbjct: 24 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILM---KMWTFGNF 80
Query: 114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVC 173
W F ++ +C T SI V+A+ RY A+ P + T V IL+ +IV
Sbjct: 81 WCEF---WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 137
Query: 174 PLLC-LPI 180
L LPI
Sbjct: 138 GLTSFLPI 145
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +M K F
Sbjct: 48 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNF 104
Query: 114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVC 173
W F ++ +C T SI V+A+ RY A+ P + T V IL+ +IV
Sbjct: 105 WCEF---WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 161
Query: 174 PLLC-LPI 180
L LPI
Sbjct: 162 GLTSFLPI 169
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +M K F
Sbjct: 25 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNF 81
Query: 114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVC 173
W F ++ +C T SI V+A+ RY A+ P + T V IL+ +IV
Sbjct: 82 WCEF---WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 138
Query: 174 PLLC-LPI 180
L LPI
Sbjct: 139 GLTSFLPI 146
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +M K F
Sbjct: 56 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNF 112
Query: 114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVC 173
W F ++ +C T SI V+A+ RY A+ P + T V IL+ +IV
Sbjct: 113 WCEF---WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 169
Query: 174 PLLC-LPI 180
L LPI
Sbjct: 170 GLTSFLPI 177
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +M K F
Sbjct: 55 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNF 111
Query: 114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVC 173
W F ++ +C T SI V+A+ RY A+ P + T V IL+ +IV
Sbjct: 112 WCEF---WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 168
Query: 174 PLLC-LPI 180
L LPI
Sbjct: 169 GLTSFLPI 176
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 55 IVANTLNIIVLTRKE-MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113
+ N L I + + E +++ TN +T LA ADL++ L +PF +I+ K+
Sbjct: 20 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA-HILTKT-------- 70
Query: 114 WTM---FVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGY 170
WT + F ++ +C T SI V+A+ RY A+ P + T V IL+ +
Sbjct: 71 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 130
Query: 171 IVCPLLC-LPI 180
IV L LPI
Sbjct: 131 IVSGLTSFLPI 141
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHS 122
+ + K++R+P N IL LA+ADL ++ TL+ ++ N F
Sbjct: 62 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGF----- 116
Query: 123 NFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQW 156
F+ + I+++ VVLAI RY+ V P N ++
Sbjct: 117 -FATLGGEIALWSLVVLAIERYVVVCKPMSNFRF 149
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHS 122
+ + K++R+P N IL LA+ADL ++ TL+ ++ N F
Sbjct: 62 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGF----- 116
Query: 123 NFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQW 156
F+ + I+++ VVLAI RY+ V P N ++
Sbjct: 117 -FATLGGEIALWSLVVLAIERYVVVCKPMSNFRF 149
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHS 122
+ + K++R+P N IL LA+ADL ++ TL+ ++ N F
Sbjct: 61 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGF----- 115
Query: 123 NFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQW 156
F+ + I+++ VVLAI RY+ V P N ++
Sbjct: 116 -FATLGGEIALWSLVVLAIERYVVVCKPMSNFRF 148
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHS 122
+ + K++R+P N IL LA+ADL ++ TL+ ++ N F
Sbjct: 62 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGF----- 116
Query: 123 NFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQW 156
F+ + I+++ VVLAI RY+ V P N ++
Sbjct: 117 -FATLGGEIALWSLVVLAIERYVVVCKPMSNFRF 149
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHS 122
+ + K++R+P N IL LA+ADL ++ TL+ ++ N F
Sbjct: 62 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGF----- 116
Query: 123 NFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQW 156
F+ + I+++ VVLAI RY+ V P N ++
Sbjct: 117 -FATLGGEIALWSLVVLAIERYVVVCKPMSNFRF 149
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHS 122
+ + K++R+P N IL LA+ADL ++ TL+ ++ N F
Sbjct: 61 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGF----- 115
Query: 123 NFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQW 156
F+ + I+++ VVLAI RY+ V P N ++
Sbjct: 116 -FATLGGEIALWSLVVLAIERYVVVCKPMSNFRF 148
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHS 122
I+L K MR+ TN L LA A+ F +N + +++ Y + FH+
Sbjct: 56 IILAHKRMRTVTNYFLVNLAFAEA----SMAAFNTVVN-FTYAVHNEWYYG-LFYCKFHN 109
Query: 123 NFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLP--- 179
F SIY +A RY+A+++P R + T V I V +++ LL P
Sbjct: 110 FFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGY 167
Query: 180 IYVTSKLKSRIVLLNQLDNNAVNYSVHP 207
T + SR+V + + + HP
Sbjct: 168 YSTTETMPSRVVCM-------IEWPEHP 188
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 40 DHYHGYISLFVCIFGIVANTLNIIVL----TRKEMRSPTNSILTGLAIADLLVMLDYIPF 95
+ +SL + + ++ N++V+ + + +++ TN +T LA ADL+V L +PF
Sbjct: 8 QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPF 67
Query: 96 TLHLNIMNKSKRDKFNYNWTMFVL-FHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNR 154
L + + + W F+ ++ +C T SI V+AI RY+A+ P +
Sbjct: 68 GATLVV-------RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQ 120
Query: 155 QWCTMKTTTVTILVGYIVCPLLC-LPI 180
T V I + + L+ LPI
Sbjct: 121 SLMTRARAKVIICTVWAISALVSFLPI 147
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 40 DHYHGYISLFVCIFGIVANTLNIIVL----TRKEMRSPTNSILTGLAIADLLVMLDYIPF 95
+ +SL + + ++ N++V+ + + +++ TN +T LA ADL+V L +PF
Sbjct: 8 QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPF 67
Query: 96 TLHLNIMNKSKRDKFNYNWTMFVL-FHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNR 154
L + + + W F+ ++ +C T SI V+AI RY+A+ P +
Sbjct: 68 GATLVV-------RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQ 120
Query: 155 QWCTMKTTTVTILVGYIVCPLLC-LPI 180
T V I + + L+ LPI
Sbjct: 121 SLMTRARAKVIICTVWAISALVSFLPI 147
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 55 IVANTLNIIVL----TRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKF 110
+V LN++VL + +++ + N + L++ADL+V +P + +M+K
Sbjct: 20 LVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSK------ 73
Query: 111 NYNWTM---FVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTIL 167
W++ LF + V T SI+ +L I RY +V P ++ T + TIL
Sbjct: 74 ---WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATIL 130
Query: 168 VGYIVCPLLCLPI 180
+ + L +PI
Sbjct: 131 GAWFLSFLWVIPI 143
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 58 NTLNIIVLTRK-EMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRD-KFNYNWT 115
N + I+V K +++ P + LA AD+L + +PF + S D +F
Sbjct: 38 NIMAIVVFILKMKVKKPAVVYMLHLATADVL-FVSVLPFKISYYF---SGSDWQFGSELC 93
Query: 116 MFV--LFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILV 168
FV F+ N SI L V++I R++AVVYP + W T+ + T L
Sbjct: 94 RFVTAAFYCNMYA-----SILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLA 143
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 54 GIVANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNY 112
GIV N L I+V+ +K++RS T+ L++ADLL ++ +PF + N
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVAN--------- 111
Query: 113 NWTMFVLFHSNFSQVCHTISIYLTV----VLAIWRYIAVVYPQHNRQWCTMKTTTVTILV 168
W F F V +T+++Y +V +++ RY+A+V+ ++++ + V +
Sbjct: 112 -W-YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVG 169
Query: 169 GYIVCPLLCLPIYV 182
+I LL +P ++
Sbjct: 170 VWIPALLLTIPDFI 183
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 54 GIVANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNY 112
GIV N L I+V+ +K++RS T+ L++ADLL ++ +PF + N
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVAN--------- 111
Query: 113 NWTMFVLFHSNFSQVCHTISIYLTV----VLAIWRYIAVVYPQHNRQWCTMKTTTVTILV 168
W F F V +T+++Y +V +++ RY+A+V+ ++++ + V +
Sbjct: 112 -W-YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVG 169
Query: 169 GYIVCPLLCLPIYV 182
+I LL +P ++
Sbjct: 170 VWIPALLLTIPDFI 183
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 54 GIVANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNY 112
GIV N L I+V+ +K++RS T+ L++ADLL ++ +PF + N
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVAN--------- 111
Query: 113 NWTMFVLFHSNFSQVCHTISIYLTV----VLAIWRYIAVVYPQHNRQWCTMKTTTVTILV 168
W F F V +T+++Y +V +++ RY+A+V+ ++++ + V +
Sbjct: 112 -W-YFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVG 169
Query: 169 GYIVCPLLCLPIYV 182
+I LL +P ++
Sbjct: 170 VWIPALLLTIPDFI 183
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 50 VCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRD 108
V + G+V N+L + V+ R +M++ TN + LA+AD LV +PF + +MN
Sbjct: 32 VFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTT-MPFQSTVYLMNSWPFG 90
Query: 109 KFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYP 150
+ + +++ F+ SI+ ++++ RYIAV +P
Sbjct: 91 DVLCKIVLSIDYYNMFT------SIFTLTMMSVDRYIAVCHP 126
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 50 VCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRD 108
VC+ G+ N L + V+ R +M++ TN + LA+AD L +PF +M
Sbjct: 27 VCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALAT-STLPFQSVNYLMGTWPFG 85
Query: 109 KFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILV 168
+ + +++ F+ SI+ +++ RYIAV +P + T + + +
Sbjct: 86 NILCKIVISIDYYNMFT------SIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVC 139
Query: 169 GYIVCPLLCLPIYVTSKLKSR 189
+I+ + LP+ + K R
Sbjct: 140 NWILSSAIGLPVMFMATTKYR 160
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 46 ISLFVCIFGIVANTLNI-IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNK 104
+ L + + I+ N L V +++ TN + LA AD+LV + IPF + ++
Sbjct: 12 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFC 71
Query: 105 SKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYP 150
+ LF + F V SI+ + +AI RYIA+ P
Sbjct: 72 AACHG--------CLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIP 109
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 50 VCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRD 108
VC G++ N L + + R ++++ TN + LA+AD L +PF +M
Sbjct: 24 VCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALAT-STLPFQSAKYLMETWPFG 82
Query: 109 KFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILV 168
+ + + +++ F+ SI+ ++++ RYIAV +P + T + +
Sbjct: 83 ELLCKAVLSIDYYNMFT------SIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINIC 136
Query: 169 GYIVCPLLCLPIYVTSKLKSR 189
+++ + +PI V + + R
Sbjct: 137 IWVLASGVGVPIMVMAVTQPR 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,369,347
Number of Sequences: 62578
Number of extensions: 279075
Number of successful extensions: 738
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 33
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)