Query psy3988
Match_columns 283
No_of_seqs 144 out of 1510
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 22:23:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 3.2E-31 6.9E-36 229.2 7.1 149 35-191 30-179 (423)
2 PHA03234 DNA packaging protein 100.0 6.1E-28 1.3E-32 214.1 14.9 214 38-265 30-255 (338)
3 PHA02834 chemokine receptor-li 99.9 3.7E-27 8E-32 208.5 12.8 138 39-185 27-164 (323)
4 PHA02638 CC chemokine receptor 99.9 9.5E-27 2.1E-31 211.8 14.9 140 39-186 97-236 (417)
5 KOG4220|consensus 99.9 5.8E-28 1.3E-32 208.8 2.5 156 39-201 29-185 (503)
6 PHA03235 DNA packaging protein 99.9 1.6E-25 3.5E-30 203.0 13.6 147 26-184 20-170 (409)
7 PHA03087 G protein-coupled che 99.9 2.3E-25 4.9E-30 198.1 12.7 144 37-187 37-180 (335)
8 PF00001 7tm_1: 7 transmembran 99.9 2.2E-25 4.9E-30 188.6 4.9 190 57-265 1-220 (257)
9 PF10320 7TM_GPCR_Srsx: Serpen 99.6 7.9E-16 1.7E-20 131.7 6.0 116 52-175 2-118 (257)
10 PF10324 7TM_GPCR_Srw: Serpent 99.6 1.5E-14 3.2E-19 127.8 10.4 152 49-200 5-162 (318)
11 KOG2087|consensus 99.5 1.2E-14 2.7E-19 125.2 6.4 144 42-187 26-173 (363)
12 PF10328 7TM_GPCR_Srx: Serpent 99.3 6.3E-12 1.4E-16 108.7 10.9 130 49-183 2-132 (274)
13 PF05296 TAS2R: Mammalian tast 98.7 1.4E-07 3E-12 82.7 12.2 205 40-261 6-248 (303)
14 PF03402 V1R: Vomeronasal orga 98.6 3.4E-08 7.4E-13 84.0 4.3 174 68-262 5-216 (265)
15 PF05462 Dicty_CAR: Slime mold 98.5 8.3E-07 1.8E-11 77.4 8.8 128 42-183 8-136 (303)
16 PF10323 7TM_GPCR_Srv: Serpent 98.4 1.7E-07 3.7E-12 81.4 3.6 130 51-186 5-144 (283)
17 PF11710 Git3: G protein-coupl 98.2 1.5E-05 3.3E-10 65.5 10.8 77 68-150 30-106 (201)
18 PF10321 7TM_GPCR_Srt: Serpent 97.9 0.00011 2.4E-09 64.5 11.0 134 37-176 29-164 (313)
19 PF10292 7TM_GPCR_Srab: Serpen 97.7 0.0023 4.9E-08 56.8 16.0 133 41-175 17-152 (324)
20 PF10316 7TM_GPCR_Srbc: Serpen 97.6 0.00052 1.1E-08 59.1 9.7 113 42-157 7-120 (273)
21 PF02101 Ocular_alb: Ocular al 97.5 0.0006 1.3E-08 60.1 9.3 127 43-178 29-170 (405)
22 PF10317 7TM_GPCR_Srd: Serpent 97.1 0.0058 1.2E-07 53.4 11.1 130 45-179 3-138 (292)
23 PF00002 7tm_2: 7 transmembran 97.0 0.00029 6.3E-09 59.6 1.8 128 45-183 5-133 (242)
24 PF02117 7TM_GPCR_Sra: Serpent 95.9 0.046 1E-06 48.5 8.4 115 38-154 18-137 (328)
25 PF02118 Srg: Srg family chemo 95.5 0.066 1.4E-06 46.0 7.7 124 49-176 6-138 (275)
26 PF10319 7TM_GPCR_Srj: Serpent 91.4 2.1 4.6E-05 37.4 9.6 119 48-166 12-136 (310)
27 PF03383 Serpentine_r_xa: Caen 91.3 0.38 8.3E-06 37.5 4.5 58 125-182 51-108 (153)
28 PF10326 7TM_GPCR_Str: Serpent 90.3 0.42 9.1E-06 41.8 4.5 109 46-155 4-119 (307)
29 PF04789 DUF621: Protein of un 89.3 6.2 0.00013 33.9 10.3 130 42-178 14-150 (305)
30 KOG4564|consensus 86.9 27 0.00058 32.6 16.3 136 45-184 149-291 (473)
31 KOG4193|consensus 86.5 5.2 0.00011 38.7 9.3 117 48-180 327-445 (610)
32 PF10327 7TM_GPCR_Sri: Serpent 84.8 8 0.00017 33.9 9.1 111 42-155 10-127 (303)
33 PF10318 7TM_GPCR_Srh: Serpent 82.7 11 0.00023 32.8 9.1 136 43-184 6-149 (302)
34 PF03125 Sre: C. elegans Sre G 79.2 48 0.001 29.8 13.7 116 40-155 26-160 (365)
35 PF02175 7TM_GPCR_Srb: Serpent 78.9 38 0.00082 28.5 13.5 40 116-155 83-122 (236)
36 PF01534 Frizzled: Frizzled/Sm 61.2 1.2E+02 0.0026 27.0 11.8 153 42-201 10-171 (328)
37 PF02076 STE3: Pheromone A rec 51.2 61 0.0013 28.1 6.7 120 53-185 3-127 (283)
38 KOG2575|consensus 48.9 5.5 0.00012 36.1 -0.1 27 241-267 253-279 (510)
39 PF06681 DUF1182: Protein of u 48.2 73 0.0016 26.3 6.1 37 116-152 115-151 (226)
40 PF11970 Git3_C: G protein-cou 41.4 7.2 0.00016 26.6 -0.4 27 238-264 3-30 (76)
41 PF10322 7TM_GPCR_Sru: Serpent 31.9 1.5E+02 0.0032 26.2 6.1 63 119-182 104-166 (307)
42 PF01102 Glycophorin_A: Glycop 24.7 73 0.0016 23.9 2.5 17 51-67 73-90 (122)
No 1
>KOG4219|consensus
Probab=99.97 E-value=3.2e-31 Score=229.18 Aligned_cols=149 Identities=21% Similarity=0.361 Sum_probs=134.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHhh-ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCch
Q psy3988 35 FQMSYDHYHGYISLFVCIFGIVANTLNIIVL-TRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN 113 (283)
Q Consensus 35 ~~~~~~~~~~~~~~i~~iigi~gN~lvl~vi-~~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~ 113 (283)
.+.....+.+++|.++.+++++||.++++++ .||++|+.+|+|++|||+||++++++..++...... ...|.+|
T Consensus 30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal-----~~~W~~G 104 (423)
T KOG4219|consen 30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYAL-----HQEWYFG 104 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----Hhccccc
Confidence 3556677889999999999999999999987 689999999999999999999999999988776665 5789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheeeecce
Q psy3988 114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIV 191 (283)
Q Consensus 114 ~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~ 191 (283)
+ ..|++..|+..+...+|+++|++||+|||+||.||++.+ .++|.+++++.++|++++++++|..+..+......
T Consensus 105 ~-f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~ 179 (423)
T KOG4219|consen 105 S-FYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYL 179 (423)
T ss_pred c-ceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeec
Confidence 8 699999999999999999999999999999999999977 59999999999999999999999988877665443
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.95 E-value=6.1e-28 Score=214.09 Aligned_cols=214 Identities=15% Similarity=0.090 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHhh--cc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchh
Q psy3988 38 SYDHYHGYISLFVCIFGIVANTLNIIVL--TR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNW 114 (283)
Q Consensus 38 ~~~~~~~~~~~i~~iigi~gN~lvl~vi--~~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~ 114 (283)
..+.++.++|.+++++|++||+++++++ .+ +++|+++|+|+.|||+||++.++. +|...... ...|.+|+
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~~------~~~w~fG~ 102 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLNR------EALFNFNQ 102 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHHH------hCCccCch
Confidence 4566778999999999999999999844 33 667899999999999999999876 67665544 45698887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheeeecceeec
Q psy3988 115 TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLN 194 (283)
Q Consensus 115 ~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 194 (283)
..|++.+++.....++|++++++||+|||++|++|.+++. ++++....+++.|+.+++.++|.+...+....+ .
T Consensus 103 -~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~---~ 176 (338)
T PHA03234 103 -AFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKK---G 176 (338)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecC---C
Confidence 6999999999999999999999999999999999988653 334444556667999999999987654432211 1
Q ss_pred cCCCCcCccccccCCCCCCcc---cce---eeeecCC--CC-ceeeeecccccccchHhhhhHhhhhhhheehccCCccc
Q psy3988 195 QLDNNAVNYSVHPGGNQSDHN---VTL---YDETNSY--NA-TLYFIDLVDYNLTNEIKLSITLSILAGTKVTTMSPYMT 265 (283)
Q Consensus 195 ~~~~c~~~~~i~~~~~~~~~~---~~~---~~~~~~~--~~-~~~~~~~~~~~~~~~~k~~~~l~iiv~~F~icw~Py~~ 265 (283)
....|...+... ........ ... +-..... .. .....+..+.+.++++|++|++.+++++|++||+||+.
T Consensus 177 ~~~~C~~~~~~~-~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~~~~~k~~k~i~~vv~vF~iCWlPy~i 255 (338)
T PHA03234 177 NYGKCNIHISSK-KAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTEKKHKKTLFFIRILILSFLCIQIPNIA 255 (338)
T ss_pred CCCcCcccCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHhHHHH
Confidence 112353322100 00000000 000 0000000 00 00000011112345689999999999999999999975
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.95 E-value=3.7e-27 Score=208.47 Aligned_cols=138 Identities=19% Similarity=0.330 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHH
Q psy3988 39 YDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFV 118 (283)
Q Consensus 39 ~~~~~~~~~~i~~iigi~gN~lvl~vi~~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c 118 (283)
...+..+++.++.++|++||+++++++.+++.+++.|+|+.|||++|++. ...+|+.+... .++|.+|+ ..|
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~~~~n~~i~nLAiaDll~-~~~lP~~i~~~------~~~w~~g~-~~C 98 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFMFVVDVYLFNIAMSDLML-VFSFPFIIHND------LNEWIFGE-FMC 98 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccccchhhhhhHHHHHHHHHH-HHHHHHHHHHH------cCCcCCcc-hHH
Confidence 34567889999999999999999988866555567899999999999986 45689876655 34688886 689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhhe
Q psy3988 119 LFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSK 185 (283)
Q Consensus 119 ~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~ 185 (283)
++..++...+..+|++++++||+|||++|++|++++. .+.+++..+++++|+.+++.++|+..++.
T Consensus 99 ~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~ 164 (323)
T PHA02834 99 KLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYY 164 (323)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9998888888889999999999999999999998754 35567777888999999999998877654
No 4
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.94 E-value=9.5e-27 Score=211.82 Aligned_cols=140 Identities=20% Similarity=0.392 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHH
Q psy3988 39 YDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFV 118 (283)
Q Consensus 39 ~~~~~~~~~~i~~iigi~gN~lvl~vi~~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c 118 (283)
...++.+++.+++++|++||+++++++.+|++|+++|+++.|||++|++..+ .+|+++... .+.|.+|+ ..|
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~------~~~W~fg~-~~C 168 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFCKKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE------FDQWIFGD-FMC 168 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH------hccccccc-cch
Confidence 3456778899999999999999998887788999999999999999998765 589887765 45798887 689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhhee
Q psy3988 119 LFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKL 186 (283)
Q Consensus 119 ~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~ 186 (283)
++..++.....++|++.++++++|||++|+||.++++..+++++...++++|+.++++++|++++.+.
T Consensus 169 k~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~ 236 (417)
T PHA02638 169 KVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEA 236 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhc
Confidence 99998888999999999999999999999999998887788888888999999999999999876543
No 5
>KOG4220|consensus
Probab=99.94 E-value=5.8e-28 Score=208.80 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhcc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHH
Q psy3988 39 YDHYHGYISLFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMF 117 (283)
Q Consensus 39 ~~~~~~~~~~i~~iigi~gN~lvl~vi~~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 117 (283)
+-....++-..++++.++||++|++.++- |++++..|+|+.+||+|||++|.+.+|+...+.+ -+.|..|. ..
T Consensus 29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~l-----mg~W~LG~-~~ 102 (503)
T KOG4220|consen 29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTL-----MGYWPLGP-LV 102 (503)
T ss_pred EEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHH-----Hcccccch-HH
Confidence 33445667778899999999999999974 9999999999999999999999999999988887 57899998 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheeeecceeeccCC
Q psy3988 118 VLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLD 197 (283)
Q Consensus 118 c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (283)
|.+-..+-++...+|++++..|++|||..|.+|+.|+...|.+++..+|++.|++++++-.|-..+|.+..... ....+
T Consensus 103 CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkr-Tv~~~ 181 (503)
T KOG4220|consen 103 CDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKR-TVPDG 181 (503)
T ss_pred HHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeee-ecCCC
Confidence 98888899999999999999999999999999999999999999999999999999999999888887664433 23345
Q ss_pred CCcC
Q psy3988 198 NNAV 201 (283)
Q Consensus 198 ~c~~ 201 (283)
.|..
T Consensus 182 eC~i 185 (503)
T KOG4220|consen 182 ECYI 185 (503)
T ss_pred ceEE
Confidence 5555
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.93 E-value=1.6e-25 Score=202.98 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=114.0
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHhh-cc-CCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3988 26 QYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVL-TR-KEM-RSPTNSILTGLAIADLLVMLDYIPFTLHLNIM 102 (283)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~iigi~gN~lvl~vi-~~-~~l-r~~~~~~l~~La~aDll~~~~~~p~~~~~~~~ 102 (283)
+.|++... ....+.+..+++.+++++|++||+++++++ .+ |.. ++.+++|+.|||++|++.. +.+|+.+...
T Consensus 20 ~~c~~~~~--~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~~-- 94 (409)
T PHA03235 20 DTCVPTEG--LSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLSN-- 94 (409)
T ss_pred CCCCchhh--hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHhc--
Confidence 34554332 233456788899999999999999999864 33 322 3567899999999999874 5688776433
Q ss_pred hcccCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHH
Q psy3988 103 NKSKRDKFNYNW-TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIY 181 (283)
Q Consensus 103 ~~~~~~~~~~~~-~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~ 181 (283)
.|.++. ...|++..++...+..+|++++++||+|||++|++|.+++. .+++++..+++++|+.++++++|+.
T Consensus 95 ------~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~ 167 (409)
T PHA03235 95 ------QGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAP 167 (409)
T ss_pred ------CccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHH
Confidence 243331 35899999999999999999999999999999999986554 4688899999999999999999876
Q ss_pred hhh
Q psy3988 182 VTS 184 (283)
Q Consensus 182 ~~~ 184 (283)
++.
T Consensus 168 ~~~ 170 (409)
T PHA03235 168 VYT 170 (409)
T ss_pred HHH
Confidence 543
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.93 E-value=2.3e-25 Score=198.08 Aligned_cols=144 Identities=24% Similarity=0.357 Sum_probs=124.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHH
Q psy3988 37 MSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTM 116 (283)
Q Consensus 37 ~~~~~~~~~~~~i~~iigi~gN~lvl~vi~~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 116 (283)
+....+..+++.+++++|++||+++++++.++++|++.|+++.|||++|++.++. .|....... ...|.+++ .
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~-----~~~~~~~~-~ 109 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKTKIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYI-----LFQWSFGE-F 109 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhccccCchHHHHHHHHHHHHHHHHh-HHHHHHHHh-----CCCCCCCc-H
Confidence 4455678889999999999999999988866688899999999999999988765 676653332 46677776 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheee
Q psy3988 117 FVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLK 187 (283)
Q Consensus 117 ~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~ 187 (283)
.|+...++......+|++++++||+|||++|++|++|+...+++++..++.++|+.+++.++|+...+...
T Consensus 110 ~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~ 180 (335)
T PHA03087 110 ACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTK 180 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeee
Confidence 89999999999999999999999999999999999999988999999999999999999998887765543
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.91 E-value=2.2e-25 Score=188.58 Aligned_cols=190 Identities=23% Similarity=0.277 Sum_probs=145.5
Q ss_pred HHHHhhHhhc-cCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3988 57 ANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYL 135 (283)
Q Consensus 57 gN~lvl~vi~-~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~ 135 (283)
||++++.++. +|++|++.++++.|||++|++.++...|....... .+.|.+++ ..|++..++..++...|.++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~-----~~~~~~~~-~~C~~~~~~~~~~~~~s~~~ 74 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLL-----FDDWIFSS-FLCRIFGFLFYFSSFSSIFS 74 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-----HSSCTSHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccc-----cccccccc-cccccccccccccccccccc
Confidence 8999998875 48899999999999999999999998887776664 35687776 68999999999999999999
Q ss_pred HHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheeeecceeeccCCCCcCcc------------
Q psy3988 136 TVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNY------------ 203 (283)
Q Consensus 136 l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~------------ 203 (283)
++++++|||++|++|++|++..+++++..++.++|+.++++++|+.+..+........ ...|..+.
T Consensus 75 ~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~C~~~~~~~~~~~~~~~~ 152 (257)
T PF00001_consen 75 LVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGS--QSFCFIDFSSSSSQIYFIYF 152 (257)
T ss_dssp HHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCC--CEEEEESCSSSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999987775544332110 11222211
Q ss_pred -----------------ccccCCCCCCcccceeeeecCCCCceeeeecccccccchHhhhhHhhhhhhheehccCCccc
Q psy3988 204 -----------------SVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVTTMSPYMT 265 (283)
Q Consensus 204 -----------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~iiv~~F~icw~Py~~ 265 (283)
.+....+++.++.. .... +..+.+.++++|.++++.+++++|++||+|+..
T Consensus 153 ~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i 220 (257)
T PF00001_consen 153 FIVFFILPLIIILICYIRILRKLRRQRKRIK--SQSS---------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFI 220 (257)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHCTC--CHTS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeeeeecccccccccccccccc--cccc---------cccccccccccccccccccccccccccCCceeH
Confidence 23333332222221 0000 133456778999999999999999999999963
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.61 E-value=7.9e-16 Score=131.69 Aligned_cols=116 Identities=28% Similarity=0.390 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhHhhc-cCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHH
Q psy3988 52 IFGIVANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHT 130 (283)
Q Consensus 52 iigi~gN~lvl~vi~-~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 130 (283)
++|++||+.++.++. +|++|+|.++++..+|++|++.+...+|...... .+.. . ....|....+...++..
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~------~~~~-i-~~~~Cf~~~~~~~f~~~ 73 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF------RDHQ-I-TRSECFWQIFFYIFFQC 73 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH------hhee-c-cHHHHHHHHHHHHHHHH
Confidence 578999999988775 5999999999999999999999998888777544 1221 2 22468888888888889
Q ss_pred HHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHH
Q psy3988 131 ISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPL 175 (283)
Q Consensus 131 ~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~ 175 (283)
++...+.+|++||++||+.|.+|+.+.+++..........+.+..
T Consensus 74 ~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~ 118 (257)
T PF10320_consen 74 AQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIF 118 (257)
T ss_pred HHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHH
Confidence 999999999999999999999999988887555544444444443
No 10
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.56 E-value=1.5e-14 Score=127.76 Aligned_cols=152 Identities=32% Similarity=0.544 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhhHhhccCCCcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCCCCCchhHHHHHHHHHH
Q psy3988 49 FVCIFGIVANTLNIIVLTRKEMRS-PTNSILTGLAIADLLVMLDYIPFTLHLNIMNK---SKRDKFNYNWTMFVLFHSNF 124 (283)
Q Consensus 49 i~~iigi~gN~lvl~vi~~~~lr~-~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~c~~~~~~ 124 (283)
+++++|+++|.+++.++.||+||+ +.|.+++++|++|++..+..++.......... ...+...+.......+...+
T Consensus 5 ~~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EEeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 457899999999999999999996 89999999999999999998887775554221 11112233333455666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheecccccc--eeeeccchhhhhhhhHHHHHHhHHHHHhhheeeecceeeccCCCCc
Q psy3988 125 SQVCHTISIYLTVVLAIWRYIAVVYPQHNR--QWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNA 200 (283)
Q Consensus 125 ~~~~~~~s~~~l~~isidRyi~I~~P~~~~--~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 200 (283)
...+...|.|..++||+.|++++.+|++.+ .+.+++.+..++.++++.+.+++.+.++..+.....+.+.+...|.
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~ 162 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCS 162 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCcee
Confidence 888999999999999999999999998864 4668889999999999999999999888777665443344344464
No 11
>KOG2087|consensus
Probab=99.53 E-value=1.2e-14 Score=125.20 Aligned_cols=144 Identities=14% Similarity=0.179 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccc-CCCCCchhHHH
Q psy3988 42 YHGYISLFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNI--MNKSK-RDKFNYNWTMF 117 (283)
Q Consensus 42 ~~~~~~~i~~iigi~gN~lvl~vi~~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~-~~~~~~~~~~~ 117 (283)
++-+...+++.+++.||.+|+..... +...++...++.|||++|+++++-..-+...+.. -.+.+ ...|..+ ..
T Consensus 26 ~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg--~g 103 (363)
T KOG2087|consen 26 ILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTG--LG 103 (363)
T ss_pred eeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhc--CC
Confidence 34445667788999999999987754 6666789999999999999999874444433331 00011 1224444 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheee
Q psy3988 118 VLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLK 187 (283)
Q Consensus 118 c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~ 187 (283)
|...+|+..++.-.|+++++.+++||++.|++|++.++.-..|....+....|+.+++.++.|+++...+
T Consensus 104 C~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y 173 (363)
T KOG2087|consen 104 CPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSY 173 (363)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 9999999999999999999999999999999999987765666688899999999999999887774444
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.35 E-value=6.3e-12 Score=108.72 Aligned_cols=130 Identities=18% Similarity=0.388 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhHhhcc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHH
Q psy3988 49 FVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQV 127 (283)
Q Consensus 49 i~~iigi~gN~lvl~vi~~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 127 (283)
.++++|++.|.+++..+.+ +++|++.+.+-.+.|++|.+.+++.+-........ +... ......-.+.+.....
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~----~~~~-~~~~~~s~~~g~~~~~ 76 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLL----DISF-LPSSLNSIIFGFIGMF 76 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cccc-CchHHHHHHHHHHHHH
Confidence 3578999999999988765 99999999999999999999998754333222221 1111 1111122334666667
Q ss_pred HHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhh
Q psy3988 128 CHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVT 183 (283)
Q Consensus 128 ~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~ 183 (283)
+...+.++-.+||++|+++|..|.+|+++.+.+.+..++.+.|+.++....+.+..
T Consensus 77 ~y~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~ 132 (274)
T PF10328_consen 77 CYFIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFP 132 (274)
T ss_pred HHHHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhc
Confidence 77889999999999999999999999999999999999999999998777655543
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.75 E-value=1.4e-07 Score=82.74 Aligned_cols=205 Identities=16% Similarity=0.079 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhc---cCCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhH
Q psy3988 40 DHYHGYISLFVCIFGIVANTLNIIVLT---RKEM-RSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWT 115 (283)
Q Consensus 40 ~~~~~~~~~i~~iigi~gN~lvl~vi~---~~~l-r~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 115 (283)
..+..++..+..++|++||++++.+-. +|+. -+|.+..+.+||++.++.....+.......+ .+..+..+
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~------~~~~~~~~ 79 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFF------FPNIYFSE 79 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cchhhhhh
Confidence 445677888889999999999887642 2333 3799999999999999988775444444442 12223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeee----ccchhhhhhhhHHHHHHhHHHHHhhheeeecce
Q psy3988 116 MFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCT----MKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIV 191 (283)
Q Consensus 116 ~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t----~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~ 191 (283)
..++...++..+....|.|..+.+++--++.|...-+.--..= ++....++.+.++.+++..++....++......
T Consensus 80 ~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~ 159 (303)
T PF05296_consen 80 NVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNN 159 (303)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccc
Confidence 4667777778888899999999999988888876543211111 223334456666666633332222222221111
Q ss_pred eeccCCCCcCcc------------------------------ccccCCCCCCcccceeeeecCCCCceeeeecccccccc
Q psy3988 192 LLNQLDNNAVNY------------------------------SVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTN 241 (283)
Q Consensus 192 ~~~~~~~c~~~~------------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
..........+. ......++|.|+++ ....+ .+..+.+.
T Consensus 160 ~~~~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~--~n~~g---------~~~ps~~a 228 (303)
T PF05296_consen 160 NTNNSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQ--KNATG---------FRDPSTEA 228 (303)
T ss_pred cccCCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh--CCCCC---------CCCCCcHH
Confidence 111111111100 34455567777777 22222 12235667
Q ss_pred hHhhhhHhhhhhhheehccC
Q psy3988 242 EIKLSITLSILAGTKVTTMS 261 (283)
Q Consensus 242 ~~k~~~~l~iiv~~F~icw~ 261 (283)
..|++|++......|.++++
T Consensus 229 H~~a~k~~~sfl~ly~~~~~ 248 (303)
T PF05296_consen 229 HIRAIKTMISFLILYIIYFL 248 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899988777776666554
No 14
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.61 E-value=3.4e-08 Score=83.96 Aligned_cols=174 Identities=19% Similarity=0.144 Sum_probs=112.6
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3988 68 KEMRSPTNSILTGLAIADLLVMLD-YIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIA 146 (283)
Q Consensus 68 ~~lr~~~~~~l~~La~aDll~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~ 146 (283)
.+..+|.+..+.+||+++.++.+. ++|...... .. -.+ ++..|++..++..++...|+.+.+++|+ |.|
T Consensus 5 ~~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~------~~-~~~-~d~gCK~v~Y~~RV~RglSictTCLLSv--fQA 74 (265)
T PF03402_consen 5 GHRLKPIDLILIHLALANILVLLSRGIPQTMAFF------GW-KFF-DDIGCKIVFYIYRVARGLSICTTCLLSV--FQA 74 (265)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHh------hc-ccC-CCceeeeeeeehHHhchhhHHhhhHHHH--Hhh
Confidence 344579999999999999999887 677433322 11 124 4478999999999999999999999999 777
Q ss_pred ee-cccccc----eeeeccchhhhhhhhHHHHHHhHHHHHhh---heeeecceeeccCCCCcCcc---------------
Q psy3988 147 VV-YPQHNR----QWCTMKTTTVTILVGYIVCPLLCLPIYVT---SKLKSRIVLLNQLDNNAVNY--------------- 203 (283)
Q Consensus 147 I~-~P~~~~----~~~t~~~~~~~i~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~c~~~~--------------- 203 (283)
|. .|...+ +...++.....+...|++..++....... .......+.....+.|....
T Consensus 75 ItISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~ 154 (265)
T PF03402_consen 75 ITISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSF 154 (265)
T ss_pred EEEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHh
Confidence 76 354322 12245566666777898887776532221 11111222222334554311
Q ss_pred --------------ccccCCCCCCcccceeeeecCCCCceeeeecccccccchHhhhhHhhhhhhheehccCC
Q psy3988 204 --------------SVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVTTMSP 262 (283)
Q Consensus 204 --------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~iiv~~F~icw~P 262 (283)
.+.....||.++++ +.... ....+...|.|+++++.++|.+|+..+..
T Consensus 155 ~D~~fvgLM~~aSgyMV~~L~RH~q~Vq--hIhs~---------~~s~r~SpE~RAtktILlLVs~FV~fY~l 216 (265)
T PF03402_consen 155 RDVLFVGLMIWASGYMVFLLYRHHQQVQ--HIHSS---------SLSPRSSPETRATKTILLLVSTFVSFYGL 216 (265)
T ss_pred hHHHHHHHHHhhhhhheeeeeecccccc--cCcCC---------CCCCCCChhHHHhCeEeeHHHHHHHHHhH
Confidence 45555667777766 44333 11235568999999999999998876654
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.46 E-value=8.3e-07 Score=77.37 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHH
Q psy3988 42 YHGYISLFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLF 120 (283)
Q Consensus 42 ~~~~~~~i~~iigi~gN~lvl~vi~~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~ 120 (283)
....+..+.++++++|-++++..+.+ |++|++.+-++.-++++|++..+..+....... ...+...|.+
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~~----------~~~~s~lC~~ 77 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSPS----------AGENSFLCQF 77 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhccc----------CCCCCcchhh
Confidence 45567777799999999999988876 999999999999999999987765332221111 1122357999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhh
Q psy3988 121 HSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVT 183 (283)
Q Consensus 121 ~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~ 183 (283)
++++..++..++.+=.++||++=|+.+++.... .+|.-.....++|.++++.++.++..
T Consensus 78 Qafliq~f~~as~lWt~~iA~nly~~~~~~~~~----~~k~e~~Y~l~~wGiPli~a~i~l~~ 136 (303)
T PF05462_consen 78 QAFLIQFFMLASFLWTLCIAFNLYLTFVKRYDE----LEKLEKYYHLVCWGIPLIPAVIPLIG 136 (303)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHhhheeEEcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999988889999999999876432 24444557788899999888866543
No 16
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.42 E-value=1.7e-07 Score=81.41 Aligned_cols=130 Identities=20% Similarity=0.305 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhHhhc--c-C--CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcccCCCCCchhHHHHHHH
Q psy3988 51 CIFGIVANTLNIIVLT--R-K--EMRSPTNSILTGLAIADLLVMLDYIPFTLHLNI----MNKSKRDKFNYNWTMFVLFH 121 (283)
Q Consensus 51 ~iigi~gN~lvl~vi~--~-~--~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~c~~~ 121 (283)
+++.++-..+++.++. | + .++++.+-++.+-+++|++..+........... ......++| .-++.
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~------~~~~~ 78 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTY------YAAIY 78 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcch------hHHHH
Confidence 3445566666665543 2 2 367899999999999999988875433322220 000001111 12333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeccc-ccceeeeccchhhhhhhhHHHHHHhHHHHHhhhee
Q psy3988 122 SNFSQVCHTISIYLTVVLAIWRYIAVVYPQ-HNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKL 186 (283)
Q Consensus 122 ~~~~~~~~~~s~~~l~~isidRyi~I~~P~-~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~ 186 (283)
...............+++|+.||.+|++|. ++.++.++.+...+.++-|+.+.++++|.+...+.
T Consensus 79 ~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~ 144 (283)
T PF10323_consen 79 YNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDF 144 (283)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCce
Confidence 344555667788889999999999999999 77788899999999999999999999986654443
No 17
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.23 E-value=1.5e-05 Score=65.52 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=59.9
Q ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Q psy3988 68 KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAV 147 (283)
Q Consensus 68 ~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I 147 (283)
++.|.-.+-++.||.++|++.++..+....... .+.-.......|..++++......++-+...+||++-|+.+
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l------~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v 103 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWL------ARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIV 103 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566999999999999988555344444 12222233368999999999999999999999999999999
Q ss_pred ecc
Q psy3988 148 VYP 150 (283)
Q Consensus 148 ~~P 150 (283)
.+|
T Consensus 104 ~~~ 106 (201)
T PF11710_consen 104 FRP 106 (201)
T ss_pred hcC
Confidence 999
No 18
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.93 E-value=0.00011 Score=64.46 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhhcc-CCCcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccCCCCCchh
Q psy3988 37 MSYDHYHGYISLFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDY-IPFTLHLNIMNKSKRDKFNYNW 114 (283)
Q Consensus 37 ~~~~~~~~~~~~i~~iigi~gN~lvl~vi~~-~~lr~~~~~~l~~La~aDll~~~~~-~p~~~~~~~~~~~~~~~~~~~~ 114 (283)
...+++.++.+++.+++-.+.+...+.++.+ +..|.+.+-++.-||+.|++..... +..-.... .+.-....
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i------~G~vfC~~ 102 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI------FGAVFCSY 102 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh------cCccccCC
Confidence 4556778888888888888888888887766 5567899999999999999987653 22222222 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHh
Q psy3988 115 TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLL 176 (283)
Q Consensus 115 ~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~ 176 (283)
...-.+.+.+...+=.++......++++|..-+..|........+++....+.+..+.++..
T Consensus 103 P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~ 164 (313)
T PF10321_consen 103 PRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYF 164 (313)
T ss_pred chHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHH
Confidence 11122333333344456778888999999999999987777767777766665555444433
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.73 E-value=0.0023 Score=56.78 Aligned_cols=133 Identities=11% Similarity=-0.010 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCCCCchhHHH
Q psy3988 41 HYHGYISLFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIM--NKSKRDKFNYNWTMF 117 (283)
Q Consensus 41 ~~~~~~~~i~~iigi~gN~lvl~vi~~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~ 117 (283)
...-.+.++++++|+..++..++.+.+ +.+|.-.-+++....++.++.++.-+.....+... ...+..+.. .+...
T Consensus 17 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~-~~~~~ 95 (324)
T PF10292_consen 17 RLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMI-PSTYR 95 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccc-cchhH
Confidence 344556777888888888888777754 77887788888888888888876544333322221 101112222 23457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHH
Q psy3988 118 VLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPL 175 (283)
Q Consensus 118 c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~ 175 (283)
|........++...+..+..++.+||++|-.+.-+|.+. ++.....+..+-|+++..
T Consensus 96 C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~ 152 (324)
T PF10292_consen 96 CFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLL 152 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHH
Confidence 988888888999999999999999999999999888652 333333344444554443
No 20
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.60 E-value=0.00052 Score=59.06 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhc-cCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHH
Q psy3988 42 YHGYISLFVCIFGIVANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLF 120 (283)
Q Consensus 42 ~~~~~~~i~~iigi~gN~lvl~vi~-~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~ 120 (283)
....+-.+.+++....|...+..+. +|+.+++...++---...|.+.+....+........... .+.....+ .-..
T Consensus 7 iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~if~ 83 (273)
T PF10316_consen 7 IVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLF-PEFLDYKN--LIFY 83 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhcccc--EEee
Confidence 3445566668888889998887664 455556666677778999999999876654444421100 01110111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheecccccceee
Q psy3988 121 HSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWC 157 (283)
Q Consensus 121 ~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~ 157 (283)
.+................||+||-+|+..|..|++..
T Consensus 84 ~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r 120 (273)
T PF10316_consen 84 IGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYR 120 (273)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC
Confidence 2233334446677788899999999999999998853
No 21
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=97.55 E-value=0.0006 Score=60.14 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhcc---CCC--cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--------
Q psy3988 43 HGYISLFVCIFGIVANTLNIIVLTR---KEM--RS--PTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKR-------- 107 (283)
Q Consensus 43 ~~~~~~i~~iigi~gN~lvl~vi~~---~~l--r~--~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~-------- 107 (283)
+..+.+..+.+|++|-++-+.=-+| ++. ++ ...-.+..||+||++.++-.+.-.....- ....
T Consensus 29 f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~--~p~~~~s~s~~~ 106 (405)
T PF02101_consen 29 FNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLG--FPNFIDSISDVN 106 (405)
T ss_pred hhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhc--CCcccccccCCC
Confidence 3445555566676666666542221 111 12 23568899999999998875544443331 0000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHH
Q psy3988 108 DKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCL 178 (283)
Q Consensus 108 ~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~ 178 (283)
+.-.. ...+|.....-..++..++.+=+.+-|+|=|+.+.+.-. +......=.+.|..+.+++.
T Consensus 107 ~~d~w-p~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ag------~~~~~lYH~~aWgl~~lL~~ 170 (405)
T PF02101_consen 107 GTDIW-PAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSAG------RSTIWLYHMMAWGLPALLCA 170 (405)
T ss_pred CCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccCC------CcchhHHHHHHHHHHHHHHH
Confidence 00001 125787776666677788888888999999999865321 11222334668888887776
No 22
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.15 E-value=0.0058 Score=53.36 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhc-c-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccCCCCCchhHHHH
Q psy3988 45 YISLFVCIFGIVANTLNIIVLT-R-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIM----NKSKRDKFNYNWTMFV 118 (283)
Q Consensus 45 ~~~~i~~iigi~gN~lvl~vi~-~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~c 118 (283)
+++.+.+.+|++.|++.++.+. | ++.-+...+++.|-|+.|++.++...-...-.... ...-.|.-.+-+...|
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C 82 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFC 82 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHH
Confidence 4577889999999999997764 4 44446789999999999999887743322111100 0001122222234578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHH
Q psy3988 119 LFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLP 179 (283)
Q Consensus 119 ~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~ 179 (283)
.....+...+...+.+.+.+--.-||..+.++.. ++++....+.+.+..++...+.
T Consensus 83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~ 138 (292)
T PF10317_consen 83 FFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIF 138 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHH
Confidence 7777777778888999998889999999998743 5566677777777776666553
No 23
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.03 E-value=0.00029 Score=59.59 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhhc-cCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHH
Q psy3988 45 YISLFVCIFGIVANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSN 123 (283)
Q Consensus 45 ~~~~i~~iigi~gN~lvl~vi~-~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 123 (283)
.+..+.+.+++++-.+.+.++. .|++|+..+....||++++++..+..+.. ..... .+.....+ ..|...+.
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~-----~~~~~~~~-~~C~~~a~ 77 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTF-----SPISTTNH-CLCRAIAI 77 (242)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhcc-----cccccccc-ccchhhhh
Confidence 4455556666666655555543 37888777888999999999888764322 11110 11111111 24999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhh
Q psy3988 124 FSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVT 183 (283)
Q Consensus 124 ~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~ 183 (283)
+.+.+..++..=+.+.+++-|..+..+... .+++........|..++++.......
T Consensus 78 ~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~ 133 (242)
T PF00002_consen 78 LLHYFFLASFFWMLVEAFYLYRLLVKVFNS----SRRRFWWYYLIGWGIPALIVVISVAV 133 (242)
T ss_dssp ------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHhheeEEEeecc----cchhhheeeeeeecCcceeeeeeeee
Confidence 888888888888889999999999887332 24455666678899888777654443
No 24
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.88 E-value=0.046 Score=48.55 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHhhcc-CCCcChH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcccCCCCCc
Q psy3988 38 SYDHYHGYISLFVCIFGIVANTLNIIVLTR-KEMRSPT-NSILTGLAIADLLVMLDYIPFT---LHLNIMNKSKRDKFNY 112 (283)
Q Consensus 38 ~~~~~~~~~~~i~~iigi~gN~lvl~vi~~-~~lr~~~-~~~l~~La~aDll~~~~~~p~~---~~~~~~~~~~~~~~~~ 112 (283)
....+-..+..++.++++++....+..+++ .-.++.+ ..++.+|..+++=-... .-.. +...+....+.....+
T Consensus 18 ~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y-~~~~~~~lyrsf~~~~dpC~i~f 96 (328)
T PF02117_consen 18 WNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISY-AIIQIWSLYRSFFYSDDPCSILF 96 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCeeeEe
Confidence 334444556677788888888888877765 4456544 55555666665433222 2211 1122211111112222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccc
Q psy3988 113 NWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNR 154 (283)
Q Consensus 113 ~~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~ 154 (283)
.+.-|.....+..++.....+.-.++.+||-++-..|-.++
T Consensus 97 -~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 97 -TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred -ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 23468877777777778888999999999999999886554
No 25
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=95.46 E-value=0.066 Score=46.02 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhHhhcc-CC---CcChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccCCCCC----chhHHHHH
Q psy3988 49 FVCIFGIVANTLNIIVLTR-KE---MRSPTNSILTGLAIADLLVMLDYIPF-TLHLNIMNKSKRDKFN----YNWTMFVL 119 (283)
Q Consensus 49 i~~iigi~gN~lvl~vi~~-~~---lr~~~~~~l~~La~aDll~~~~~~p~-~~~~~~~~~~~~~~~~----~~~~~~c~ 119 (283)
+=++.+++.+.+++.++.+ |+ .+++-+.+...=++.|++.-+...+. .+.... ++...+. ........
T Consensus 6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~---~~~~~~~~~~~~~~~~~l~ 82 (275)
T PF02118_consen 6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYT---PPFCPFFLPFFENPPFFLN 82 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhcccc---CccchhHHHHHcCCcHHHH
Confidence 3456777778888877754 33 36677777777777777765553332 222220 0000000 01112445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHh
Q psy3988 120 FHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLL 176 (283)
Q Consensus 120 ~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~ 176 (283)
+..++...+..+.......++++|+-++..|.++.++.++.. ..++.++.+.++..
T Consensus 83 ~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~ 138 (275)
T PF02118_consen 83 IFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSF 138 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHH
Confidence 556667777888999999999999999999999988766544 33444444444433
No 26
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=91.38 E-value=2.1 Score=37.42 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhHhhcc-CCCc-ChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhc--ccCCCCCchhHHHHHHH
Q psy3988 48 LFVCIFGIVANTLNIIVLTR-KEMR-SPTNSILTGLAIADLLVMLD--YIPFTLHLNIMNK--SKRDKFNYNWTMFVLFH 121 (283)
Q Consensus 48 ~i~~iigi~gN~lvl~vi~~-~~lr-~~~~~~l~~La~aDll~~~~--~~p~~~~~~~~~~--~~~~~~~~~~~~~c~~~ 121 (283)
-+.++++.+.|-+-++++.. |+.+ -.-.+++..-|+-|++.++. ..|..++.+-++- --.+.|.......-+..
T Consensus 12 k~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~ 91 (310)
T PF10319_consen 12 KIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHL 91 (310)
T ss_pred HHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHH
Confidence 34567788889988877654 5555 56678999999999999988 4565555430000 00122322222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhh
Q psy3988 122 SNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTI 166 (283)
Q Consensus 122 ~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i 166 (283)
...--.+...|--.+..=-+-||+++.+|...++...+......+
T Consensus 92 ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~ 136 (310)
T PF10319_consen 92 LSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSI 136 (310)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHH
Confidence 112222223444455555679999999997655544444433333
No 27
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=91.29 E-value=0.38 Score=37.50 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHh
Q psy3988 125 SQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYV 182 (283)
Q Consensus 125 ~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~ 182 (283)
..++.....+..++|+++|-..+.+|++...+.+.+|....+.++.++.+...+.|++
T Consensus 51 ~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 51 GTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred ehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 3445566788889999999999999999877789999999888766666655554443
No 28
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=90.28 E-value=0.42 Score=41.82 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHhhHhhcc--CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cccCCCCCchhHHHH
Q psy3988 46 ISLFVCIFGIVANTLNIIVLTR--KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMN-----KSKRDKFNYNWTMFV 118 (283)
Q Consensus 46 ~~~i~~iigi~gN~lvl~vi~~--~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~~c 118 (283)
+.-+..+++++.|++.++.+.+ ++.-..-.+++...|+.|++.++.-....-..+... -.+.+.+..+.. ..
T Consensus 4 ~~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~-~~ 82 (307)
T PF10326_consen 4 IQYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKS-IG 82 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccch-he
Confidence 3445678899999998877643 332344566888899999999887543332222100 000111111111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccce
Q psy3988 119 LFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQ 155 (283)
Q Consensus 119 ~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~ 155 (283)
.....+...+...+...++.=-+-||.++++|.+-+.
T Consensus 83 ~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~ 119 (307)
T PF10326_consen 83 QILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRY 119 (307)
T ss_pred eehhhhhhhhHHHHHHHHHhHhhhheeeeccchhhcc
Confidence 2222333344456667777777899999999986544
No 29
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=89.30 E-value=6.2 Score=33.89 Aligned_cols=130 Identities=16% Similarity=0.203 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHH--HhhHhh-ccCCCcChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcccCCCCCchh
Q psy3988 42 YHGYISLFVCIFGIVANT--LNIIVL-TRKEMRSPTNSILTGLAIADLLVMLDYI----PFTLHLNIMNKSKRDKFNYNW 114 (283)
Q Consensus 42 ~~~~~~~i~~iigi~gN~--lvl~vi-~~~~lr~~~~~~l~~La~aDll~~~~~~----p~~~~~~~~~~~~~~~~~~~~ 114 (283)
.....+.+..+.+.+-++ +++.++ |.+=.+-+...|+..|.++-.+.+...+ |-.+.... .++..-.
T Consensus 14 ~vi~~Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~-----t~~~~~s- 87 (305)
T PF04789_consen 14 FVISLFVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLI-----TKEFVQS- 87 (305)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhh-----hHHHhcc-
Confidence 344445555555555554 333343 4332334678999999999988887643 44442221 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHH
Q psy3988 115 TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCL 178 (283)
Q Consensus 115 ~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~ 178 (283)
..-.+..+...++.++-.+.-..+|+.|.....+-.+..+...+...++-...+|++++..-.
T Consensus 88 -~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~ 150 (305)
T PF04789_consen 88 -ELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVY 150 (305)
T ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 122334556667778888999999999988776332223334556666667778888765554
No 30
>KOG4564|consensus
Probab=86.88 E-value=27 Score=32.64 Aligned_cols=136 Identities=12% Similarity=0.093 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHhhHhhcc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCCCCC---chhHHH
Q psy3988 45 YISLFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNK---SKRDKFN---YNWTMF 117 (283)
Q Consensus 45 ~~~~i~~iigi~gN~lvl~vi~~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~---~~~~~~~---~~~~~~ 117 (283)
++|.+-..++++.=++.+.++.. |++|=..|++=.||.++=++-++..+........... .....+. ......
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 56666666666665555666644 8899778999999999999888876555443332110 0011111 234467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhh
Q psy3988 118 VLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTS 184 (283)
Q Consensus 118 c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~ 184 (283)
|+...++...+..+..+=|.+=.+.=|-.+..-+. -.+++......+.|.+.+++..+-.+..
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~----ser~~~~~y~~iGWG~P~v~v~~Wai~r 291 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF----SERRYFWLYLLIGWGVPAVFVVVWAIVR 291 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec----cCccHHHHHHHHhhCCcHHHhhhHHhHh
Confidence 88777666666555555554444433333332221 1255666778889999988888766655
No 31
>KOG4193|consensus
Probab=86.46 E-value=5.2 Score=38.65 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhhHhhc-cCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHH-HHHHHHHHH
Q psy3988 48 LFVCIFGIVANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTM-FVLFHSNFS 125 (283)
Q Consensus 48 ~i~~iigi~gN~lvl~vi~-~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~c~~~~~~~ 125 (283)
-+.+++++++=++.++++. .|++|+-.+....||+++=++.-+ ..+. +.|.-.... .|...+++.
T Consensus 327 ~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l----~fL~---------~~~~~~~~~~~C~~~a~ll 393 (610)
T KOG4193|consen 327 TVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAEL----LFLL---------GIDRTSTSVVLCIAAAILL 393 (610)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH----HHhc---------ccccccCcccccHHHHHHH
Confidence 3445555555555555543 255554447888888888222221 1122 223333333 799999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHH
Q psy3988 126 QVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPI 180 (283)
Q Consensus 126 ~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~ 180 (283)
.++..++.+=|.++++.=|..++.=+ +...+++........|....++....
T Consensus 394 hff~LaaF~Wm~leg~hl~~~~v~vf---~~~~~~~~l~~~~~gwg~Pavvv~Is 445 (610)
T KOG4193|consen 394 HFFFLAAFFWMLLEGFHLYLLLVEVF---RSRPRRRKLLYSLYGWGVPAVVVGVS 445 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHhhhhHHHHhhe
Confidence 88889999999999999888544333 33345566666568999887776543
No 32
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=84.81 E-value=8 Score=33.92 Aligned_cols=111 Identities=9% Similarity=0.106 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhh-cc-CCCcChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCchh
Q psy3988 42 YHGYISLFVCIFGIVANTLNIIVL-TR-KEMRSPTNSIL---TGLAIADLLVMLDYIPFTLHLNIMNKSKR--DKFNYNW 114 (283)
Q Consensus 42 ~~~~~~~i~~iigi~gN~lvl~vi-~~-~~lr~~~~~~l---~~La~aDll~~~~~~p~~~~~~~~~~~~~--~~~~~~~ 114 (283)
++...+=++++++++.|.+.++.+ .| +++.+-.++++ +...++|+-.++..-|..+.....++... ..| ++
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~-f~- 87 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARY-FG- 87 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhc-CC-
Confidence 456777888999999999999765 34 55555444433 45678999999887777666654222221 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccce
Q psy3988 115 TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQ 155 (283)
Q Consensus 115 ~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~ 155 (283)
.-......+..+......-.+..--+-|+.+|.+..+.++
T Consensus 88 -i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~ 127 (303)
T PF10327_consen 88 -ISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV 127 (303)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 1111222223333344444555556689999999877655
No 33
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=82.69 E-value=11 Score=32.84 Aligned_cols=136 Identities=16% Similarity=0.196 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhc-c--CCCcChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-chh
Q psy3988 43 HGYISLFVCIFGIVANTLNIIVLT-R--KEMRSPTNSILT----GLAIADLLVMLDYIPFTLHLNIMNKSKRDKFN-YNW 114 (283)
Q Consensus 43 ~~~~~~i~~iigi~gN~lvl~vi~-~--~~lr~~~~~~l~----~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~-~~~ 114 (283)
.....-++.++++.-|.+..+.+. | +++++ ....+. ...+.|+..+....|........+.. .|-.. +|
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~-~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~-~G~l~~~g- 82 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKS-VKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYP-LGILSYFG- 82 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHH-HHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhC-Ccchhhcc-
Confidence 344556677788899999987664 4 34443 333333 34577887777766654433321111 11111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhh
Q psy3988 115 TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTS 184 (283)
Q Consensus 115 ~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~ 184 (283)
.-..+...+..........++..+--.||.++..+.+ +. ..++.-.......++.+.+...|.+...
T Consensus 83 -v~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~-~~~~~r~~~~~~~y~~~~~~~~~~~~~~ 149 (302)
T PF10318_consen 83 -VPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RS-LWKKIRIIFIIFNYIIAFLFFIPIYLSI 149 (302)
T ss_pred -cChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-cc-cchhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1123344445555566677777788899999997654 22 1222233334445555665666665533
No 34
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=79.24 E-value=48 Score=29.85 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcc-CCCcChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccc---CCCC-C
Q psy3988 40 DHYHGYISLFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIA---DLLVMLDYIPFTLHLNIMNKSK---RDKF-N 111 (283)
Q Consensus 40 ~~~~~~~~~i~~iigi~gN~lvl~vi~~-~~lr~~~~~~l~~La~a---Dll~~~~~~p~~~~~~~~~~~~---~~~~-~ 111 (283)
...+.++-+++.+++..-....+.++.+ |..|.-.+++...+-.. +++.-+...|............ ...| .
T Consensus 26 ~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~t 105 (365)
T PF03125_consen 26 YIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWWT 105 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhhc
Confidence 3444555555555555555555566655 88886555555544333 2333333444333221000000 0001 1
Q ss_pred c-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccce
Q psy3988 112 Y-----------NWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQ 155 (283)
Q Consensus 112 ~-----------~~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~ 155 (283)
. .+...-.+.+++..-......+.+.++++||..|-..--.|.+
T Consensus 106 ~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk 160 (365)
T PF03125_consen 106 DDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEK 160 (365)
T ss_pred cCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 1111223445555555566689999999999999999988876
No 35
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=78.86 E-value=38 Score=28.46 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccce
Q psy3988 116 MFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQ 155 (283)
Q Consensus 116 ~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~ 155 (283)
..++.......+.+..+.+.-..+++|||+|....-+|.+
T Consensus 83 ~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~ 122 (236)
T PF02175_consen 83 TLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN 122 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 4667777778888899999999999999999999877765
No 36
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=61.20 E-value=1.2e+02 Score=26.98 Aligned_cols=153 Identities=9% Similarity=0.049 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhc-c-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC----CC---CCc
Q psy3988 42 YHGYISLFVCIFGIVANTLNIIVLT-R-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKR----DK---FNY 112 (283)
Q Consensus 42 ~~~~~~~i~~iigi~gN~lvl~vi~-~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~----~~---~~~ 112 (283)
.......+.+.+.++.+++.+..+. . ++.|-| .--++-++++-+++++..+.-.+...-.-..+. .. ..-
T Consensus 10 ~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yP-erpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~ 88 (328)
T PF01534_consen 10 FARIWIGVWSVICFISTLFTVLTFLIDRSRFRYP-ERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDG 88 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc-cchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecC
Confidence 3344455556666666777665553 2 444443 555666777777777764443333111000010 00 001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheeeeccee
Q psy3988 113 NWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVL 192 (283)
Q Consensus 113 ~~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~ 192 (283)
.+...|.....+.+++..++..=-+.+++.=|++-..--.+.. -.+++...=.+.|.++.+..+..+...+.+++
T Consensus 89 ~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD--- 163 (328)
T PF01534_consen 89 LENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKVDGD--- 163 (328)
T ss_pred CCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhcccccc---
Confidence 1224687777766666656555556677777888765433222 23455556678999999998877776665544
Q ss_pred eccCCCCcC
Q psy3988 193 LNQLDNNAV 201 (283)
Q Consensus 193 ~~~~~~c~~ 201 (283)
+-.+.|..
T Consensus 164 -~ltGiC~V 171 (328)
T PF01534_consen 164 -ELTGICFV 171 (328)
T ss_pred -cccceeEE
Confidence 33355654
No 37
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=51.18 E-value=61 Score=28.14 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=64.9
Q ss_pred HHHHHHHHhhHhh-cc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHH
Q psy3988 53 FGIVANTLNIIVL-TR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHT 130 (283)
Q Consensus 53 igi~gN~lvl~vi-~~-~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 130 (283)
++++|..+.+.-+ ++ |.-..++-.++.-+.+.++...+-.+ +.. . +...|.. ..|.+..-+......
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INai----IW~--~--n~~~~~~---~wCDI~~kl~~~~~~ 71 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAI----IWR--D--NDINWWP---VWCDISTKLIIGSSV 71 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhh----hcC--C--CCCccCc---eeeeehHHHHHHHHH
Confidence 5667777766544 45 66667888888899888887665422 111 1 0122323 357777665544443
Q ss_pred HHHHHHHHHHHHHHhhe-eccccccee--eeccchhhhhhhhHHHHHHhHHHHHhhhe
Q psy3988 131 ISIYLTVVLAIWRYIAV-VYPQHNRQW--CTMKTTTVTILVGYIVCPLLCLPIYVTSK 185 (283)
Q Consensus 131 ~s~~~l~~isidRyi~I-~~P~~~~~~--~t~~~~~~~i~~~W~~~~~~~~~~~~~~~ 185 (283)
. ...+.+++-|.+.- ..+.+.... ..+|+..+=..+++...++.....++...
T Consensus 72 g--~~~a~lcI~r~L~~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~ 127 (283)
T PF02076_consen 72 G--IPAASLCIMRRLYRIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQG 127 (283)
T ss_pred H--HHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 33444444455543 333222111 12455555567777777777665555433
No 38
>KOG2575|consensus
Probab=48.91 E-value=5.5 Score=36.09 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.0
Q ss_pred chHhhhhHhhhhhhheehccCCccccc
Q psy3988 241 NEIKLSITLSILAGTKVTTMSPYMTRP 267 (283)
Q Consensus 241 ~~~k~~~~l~iiv~~F~icw~Py~~~~ 267 (283)
...|.++.-.+++++|.++|+|++..-
T Consensus 253 ~f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 253 SFARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457788888899999999999998665
No 39
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=48.24 E-value=73 Score=26.31 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccc
Q psy3988 116 MFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQH 152 (283)
Q Consensus 116 ~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~ 152 (283)
..|.+...+.......+....+++|++||..|+.-.|
T Consensus 115 ~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 115 FVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 4676666555555556666677899999999997554
No 40
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=41.35 E-value=7.2 Score=26.58 Aligned_cols=27 Identities=7% Similarity=0.002 Sum_probs=21.2
Q ss_pred cccchHhhhhHhhhhhhheehccC-Ccc
Q psy3988 238 NLTNEIKLSITLSILAGTKVTTMS-PYM 264 (283)
Q Consensus 238 ~~~~~~k~~~~l~iiv~~F~icw~-Py~ 264 (283)
++++.+|.+|.+.+=-++|+++|+ |+-
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~ 30 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFA 30 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777877777889999999 975
No 41
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=31.88 E-value=1.5e+02 Score=26.17 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHh
Q psy3988 119 LFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYV 182 (283)
Q Consensus 119 ~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~ 182 (283)
++..++...+.+.+...-++.++-|-+.+..|.++.++ .++-.....-++.+.+++.++|.+.
T Consensus 104 k~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~p 166 (307)
T PF10322_consen 104 KILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFP 166 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccC
Confidence 34455666778999999999999999999999887664 3333345555566666666665443
No 42
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.69 E-value=73 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.426 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhh-Hhhcc
Q psy3988 51 CIFGIVANTLNI-IVLTR 67 (283)
Q Consensus 51 ~iigi~gN~lvl-~vi~~ 67 (283)
.+.|++|=++.| +.++|
T Consensus 73 v~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555544433 44544
Done!