RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3988
(283 letters)
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 66.5 bits (163), Expect = 1e-12
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 19/217 (8%)
Query: 45 YISLFVCIFGIVANTLNIIVLTRKEMR-SPTNSILTGLAIADLLVMLDYIP---FTLHLN 100
+ + I G + N ++I+LTRK MR S N I+ G+AI D++ ML I ++
Sbjct: 1 KVEFILSIIGFIINIFHLIILTRKSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFIIS 60
Query: 101 IMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNR--QWCT 158
N +Y + + + S +L V +A+ R + V P N+ +
Sbjct: 61 YENSECIPPDSYLKVLLDWILESLQDISRRCSTWLGVFMALIRTLVVKNPMSNKIQKLSK 120
Query: 159 MKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIV---LLNQLDNNAVNYSVHPGGNQSDHN 215
K + I I+ +L LP + + IV + + N + + + +
Sbjct: 121 PKFGLIII----IIVFILSLPFSIFYYFRYEIVEEGGIWKPPPNCAGFPPNYTEPR--YV 174
Query: 216 VTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSIL 252
+ L + + L I Y L + I I IL
Sbjct: 175 LVLSELFTDNDGLLLKI----YLLIDGIVSKIIPCIL 207
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 53.5 bits (129), Expect = 2e-08
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 62 IIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWT----MF 117
+++L K++R+PTN L LA+ADLL +L P+ L+ + +W +
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLV---------GGDWPFGDALC 51
Query: 118 VLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLC 177
L F V SI L ++I RY+A+V+P R+ T + V ILV +++ LL
Sbjct: 52 KLVGFLFV-VNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLS 110
Query: 178 LPIYVTSKLK 187
LP + S L+
Sbjct: 111 LPPLLFSWLR 120
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 53.2 bits (128), Expect = 4e-08
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 7 NNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVC-----IFGIVANTLN 61
N T T + + + + Y E + ++ + L V FG+V N +
Sbjct: 2 NYTLTINTTIENTTDYYYDTYYDEDYADCDLNIGYDTNSTILIVVYSTIFFFGLVGNIIV 61
Query: 62 IIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNW-TMFVLF 120
I VLT+ ++++P + L LA++DLL ++ PF ++ I+ F +++
Sbjct: 62 IYVLTKTKIKTPMDIYLLNLAVSDLLFVMTL-PFQIYYYIL-------FQWSFGEFACKI 113
Query: 121 HSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPI 180
S + S+ V+++ RYIA+V+P + + T+K + LV +I+ + PI
Sbjct: 114 VSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPI 173
Query: 181 YVTSKLKS 188
K
Sbjct: 174 LFVYTTKK 181
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 45.3 bits (108), Expect = 1e-05
Identities = 21/136 (15%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 48 LFVCIFGIVANTLNI-IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSK 106
+ +FGI+ N L I L +++ + AI++ ++ ++ + + + +++ S
Sbjct: 1 FLISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLS- 59
Query: 107 RDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTI 166
+ + IS +++++ R+ AV +P ++ ++K T + I
Sbjct: 60 ----FLPELLNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIII 115
Query: 167 LVGYIVCPLLCLPIYV 182
+I+ ++ Y
Sbjct: 116 TFIWIIAIIISTLFYF 131
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 42.2 bits (100), Expect = 1e-04
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 31/166 (18%)
Query: 51 CIFGIVANTLNIIV-LTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDK 109
+ GI N + II+ +K++RS + ++ +ADLL + I F + L + R++
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQLTRNE 60
Query: 110 -FNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMK-------- 160
F F Q T L +++ I R IAV +P R + K
Sbjct: 61 CFLII------IPYIFGQ---TAQSPLMLMIGIDRLIAVKFPIFYRLLSSSKYLFIQLIF 111
Query: 161 ---TTTVTILVGY--------IVC-PLLCLPIYVTSKLKSRIVLLN 194
++ ++ G+ IVC P L L V++N
Sbjct: 112 PVIYSSFILVYGFLERDDETIIVCAPPLALNGTAFRIFTLSSVIIN 157
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 34.6 bits (79), Expect = 0.047
Identities = 31/137 (22%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 45 YISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNK 104
YI +F I G+ N I++L K++++ T+ + LAI+DL+ ++D+ PF ++
Sbjct: 105 YIIIF--ILGLFGNAAIIMILFCKKIKTITDIYIFNLAISDLIFVIDF-PFIIY------ 155
Query: 105 SKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTV 164
++ D++ + M + +++ + +++L +++I RY A++YP +++ T +
Sbjct: 156 NEFDQWIFGDFMCKVISASY-YIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGII 214
Query: 165 TILVGYIVCPLLCLPIY 181
++ +I+ ++ P Y
Sbjct: 215 LCIISWILSLIITSPAY 231
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 33.7 bits (77), Expect = 0.098
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 45 YISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNK 104
YI LF IFG++ N L I VL K + L +A++DL+++ + PF +H N +N+
Sbjct: 35 YILLF--IFGLIGNVLVIAVLIVKRFMFVVDVYLFNIAMSDLMLVFSF-PFIIH-NDLNE 90
Query: 105 SKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVV 148
+F + V F FS +++ +++I RYI VV
Sbjct: 91 WIFGEFMCKLVLGVYFVGFFS------NMFFVTLISIDRYILVV 128
>gnl|CDD|110233 pfam01216, Calsequestrin, Calsequestrin.
Length = 350
Score = 29.9 bits (67), Expect = 1.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 30 EHFQSFQMSYDHYHGYISLFVCIFGIVANTLNI 62
EH+++F+ + + +H YI F VA L +
Sbjct: 156 EHYKAFEDAAEEFHPYIPFFATFDKKVAKKLTL 188
>gnl|CDD|185044 PRK15087, PRK15087, hemolysin; Provisional.
Length = 219
Score = 28.9 bits (65), Expect = 2.8
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
Query: 60 LNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN-WTMFV 118
L++IV+ + ++ +T LA+ ++ L I + KR +N+ W FV
Sbjct: 151 LSLIVIYQLAIKLAIGG-VTLLAVGGVVYSLGVIFYV--------CKRIPYNHAIWHGFV 201
Query: 119 LFHSNFSQVCHTISIYLTV 137
L S VCH ++IYL V
Sbjct: 202 LGGS----VCHFLAIYLYV 216
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 29.1 bits (65), Expect = 3.2
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 184 SKLKSRIVLLNQLDNNAVNYSVHPGG--NQSDHNVTLYDETNSYNATLYFIDLVD 236
SK K + LL++LD V+++ P G NQS H V + A L D+VD
Sbjct: 836 SKEKEVLALLSRLDLQNVHFTDSPPGDANQSVHLVA----SEGLEAYLPLADMVD 886
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional.
Length = 456
Score = 28.8 bits (64), Expect = 3.4
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 49/174 (28%)
Query: 47 SLFVCIF-----GIVANTLNIIVLTR--------------------------KEMRS--- 72
S FV IF VAN LNI+VLT K + S
Sbjct: 269 SPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDK 328
Query: 73 ---PTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCH 129
P N+IL + L V+++Y+ ++ NW M L H F +
Sbjct: 329 RGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQ 388
Query: 130 TISIYLTVVLAIWRYIAVVYPQHNRQW-CTMKTTTVTILVGYIVCPLLCLPIYV 182
+ + R+ A++YP N W C + V +++ ++ P + + +Y+
Sbjct: 389 EQGV-------VTRFPALLYPLGN--WICLLFMAAVLVIM--LMTPGMAISVYL 431
>gnl|CDD|216866 pfam02076, STE3, Pheromone A receptor.
Length = 284
Score = 28.7 bits (65), Expect = 3.4
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 46 ISLFVCIFGIVANTLNIIVLT-----RKEMR---SPTNSILTG------LAIADLLVMLD 91
++ + +V+ ++ L RK+ + +NS L LA+A ++ +L
Sbjct: 152 YFIWPLLISLVSAVYAVLALRWFYRRRKQFSDILASSNSGLNKSRFLRLLALA-IIEILA 210
Query: 92 YIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVY 149
+P T+++ + + + +T + HSN+S++ S ++ L W A Y
Sbjct: 211 TVPLTIYVLVSDLNLVSPGLRPYTSWSDVHSNWSRIDQYPSSVGSLELDRWLPPASAY 268
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 28.7 bits (65), Expect = 3.6
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 45 YISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNK 104
Y + +C+ + K ++ ++L IAD++ +L+Y M
Sbjct: 12 YFLILICLL--------KLRNRSKTFKTTFYTLLLQHCIADIITLLNYY-----FGAMFP 58
Query: 105 SK---RDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYP--QHNRQWCTM 159
RD + + + N + I L+ RY+A+ +P + + W +
Sbjct: 59 KIGWFRDFYFNYQHYYAAAYYNIAYYTLYIRCTGISFLSTNRYLAICFPISRLTKIWQSA 118
Query: 160 KTTTVTILVGYIVCPLLCLPIY 181
+ + IL+ ++ L+ L +
Sbjct: 119 RLWKI-ILIYWLPGLLISLVVL 139
>gnl|CDD|218544 pfam05296, TAS2R, Mammalian taste receptor protein (TAS2R). This
family consists of several forms of mammalian taste
receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled
receptors expressed in subsets of taste receptor cells
of the tongue and palate epithelia and are organised in
the genome in clusters. The proteins are genetically
linked to loci that influence bitter perception in mice
and humans.
Length = 303
Score = 28.4 bits (64), Expect = 4.1
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 45 YISLFV--CIFGIVANTL----NIIVLTRKEMRSPTNSILTGLAIAD----LLVMLDYIP 94
++ + V + GI+ N N I +K S + ILT LAI+ L++LD
Sbjct: 9 FLIVAVVEFLLGILGNGFIVLVNCIDWVKKRKLSSIDLILTSLAISRICLQWLILLDNFI 68
Query: 95 FTLHLNI-MNKSKRDKFNYNWT 115
N ++ + WT
Sbjct: 69 IVFFPNTYLSGKLLRIISLFWT 90
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 28.4 bits (64), Expect = 5.1
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 142 WRYIAVVYPQHNRQWCTMKTTTV 164
W AVV+ N QW K V
Sbjct: 480 WPVTAVVF--RNYQWGAEKKNQV 500
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional.
Length = 458
Score = 27.6 bits (61), Expect = 9.6
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 65 LTRKEMRS-PTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSN 123
LTR R P NS++ AI L+V+++Y+ ++ NW M L H
Sbjct: 332 LTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLR 391
Query: 124 F 124
F
Sbjct: 392 F 392
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.417
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,576,633
Number of extensions: 1243856
Number of successful extensions: 1420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1408
Number of HSP's successfully gapped: 30
Length of query: 283
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 187
Effective length of database: 6,679,618
Effective search space: 1249088566
Effective search space used: 1249088566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.1 bits)