RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3988
(283 letters)
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 74.1 bits (182), Expect = 3e-15
Identities = 32/198 (16%), Positives = 74/198 (37%), Gaps = 28/198 (14%)
Query: 4 NLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLF--VCIFGIVANTLN 61
L N + T + + + + L+ VC+ G++ N L
Sbjct: 87 KLANEGKVKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLV 146
Query: 62 IIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNW------ 114
+ V+ R +M++ TN + LA+AD LV+L +PF ++ W
Sbjct: 147 MYVILRHTKMKTATNIYIFNLALADTLVLL-TLPFQGTDILLG---------FWPFGNAL 196
Query: 115 ---TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYI 171
+ + +++ F+ S + +++ RY+A+ +P T + +
Sbjct: 197 CKTVIAIDYYNMFT------STFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWA 250
Query: 172 VCPLLCLPIYVTSKLKSR 189
+ ++ +P+ + +
Sbjct: 251 LASVVGVPVAIMGSAQVE 268
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 71.3 bits (175), Expect = 2e-14
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 48 LFVCIFGIVANTLNI-IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSK 106
+ + G N L + + + K++R+P N IL LA+ADL ++ TL+ ++
Sbjct: 46 FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV 105
Query: 107 RDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTI 166
N F F+ + I+++ VVLAI RY+ V P N ++ + +
Sbjct: 106 FGPTGCNLEGF------FATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGV 158
Query: 167 LVGYIVCPLLCLPIYV 182
+++ P V
Sbjct: 159 AFTWVMALACAAPPLV 174
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 68.8 bits (168), Expect = 2e-13
Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 9/157 (5%)
Query: 30 EHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVL----TRKEMRSPTNSILTGLAIAD 85
H++ F D + + +F+ I GI+ N IV+ K +++P N + LA +D
Sbjct: 21 PHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSD 80
Query: 86 LLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYI 145
L + ++ K K+ + + ++ + +SI +++I RY
Sbjct: 81 FTFSLVNGFPLMTISCFLK----KWIFGFAACKVYGF-IGGIFGFMSIMTMAMISIDRYN 135
Query: 146 AVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYV 182
+ P + + + + I+ ++ L +
Sbjct: 136 VIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF 172
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 67.8 bits (166), Expect = 4e-13
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 21/148 (14%)
Query: 48 LFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSK 106
+ + +V N + + ++ K MR+ TN L LA A+ + + N
Sbjct: 40 TVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHN--- 96
Query: 107 RDKFNYNWTM------FVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMK 160
W F F F SIY +A RY+A+++P R +
Sbjct: 97 ------EWYYGLFYCKFHNF---FPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL--SAT 145
Query: 161 TTTVTILVGYIVCPLLCLPIYVTSKLKS 188
T V I V +++ LL P S ++
Sbjct: 146 ATKVVICVIWVLALLLAFPQGYYSTTET 173
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 67.7 bits (165), Expect = 4e-13
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 26/150 (17%)
Query: 50 VCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRD 108
VC+ G+ N L + V+ R +M++ TN + LA+AD L +PF +M
Sbjct: 27 VCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATS-TLPFQSVNYLMG----- 80
Query: 109 KFNYNW---------TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTM 159
W + + +++ F+ SI+ +++ RYIAV +P + T
Sbjct: 81 ----TWPFGNILCKIVISIDYYNMFT------SIFTLCTMSVDRYIAVCHPVKALDFRTP 130
Query: 160 KTTTVTILVGYIVCPLLCLPIYVTSKLKSR 189
+ + + +I+ + LP+ + K R
Sbjct: 131 RNAKIVNVCNWILSSAIGLPVMFMATTKYR 160
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 61.5 bits (149), Expect = 7e-11
Identities = 36/194 (18%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 8 NTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYIS----LFVCIFGIVANTLNII 63
+ N + E + Y F+ +++ + + GIV N L I+
Sbjct: 12 EGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVIL 71
Query: 64 VLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWT------- 115
V+ K++RS T+ L++ADLL ++ +PF + N W
Sbjct: 72 VMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVAN----------WYFGNFLCK 120
Query: 116 -MFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCP 174
+ V++ N S+++ +++ RY+A+V+ ++++ + V + +I
Sbjct: 121 AVHVIYTVNL-----YSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPAL 175
Query: 175 LLCLPIYVTSKLKS 188
LL +P ++ + +
Sbjct: 176 LLTIPDFIFANVSE 189
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 60.1 bits (145), Expect = 1e-10
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 15/138 (10%)
Query: 46 ISLFVCIFGIVANTLNII-VLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNK 104
+ L + + I+ N L V +++ TN + LA AD+ V + IPF + ++
Sbjct: 27 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--- 83
Query: 105 SKRDKFNYNWTMFV---LFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKT 161
+ LF + F V SI+ + +AI RYIA+ P T
Sbjct: 84 --------GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTR 135
Query: 162 TTVTILVGYIVCPLLCLP 179
I + +++ + L
Sbjct: 136 AKGIIAICWVLSFAIGLT 153
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 59.5 bits (143), Expect = 3e-10
Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 12/180 (6%)
Query: 1 MECNLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTL 60
++ + + + +YD+ V N T + + + + + +C F I+ N
Sbjct: 27 VKAHRSSVSDYVNYDIIVRHYNYTGKLNISADKENSIKLT---SVVFILICCFIILENIF 83
Query: 61 NII-VLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVL 119
++ + K+ P + LA++DLL + Y L + + L
Sbjct: 84 VLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATT------YKLTPAQWFL 137
Query: 120 FHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLP 179
V + S++ + +AI RYI ++ + + + I +++ +L
Sbjct: 138 REG-SMFVALSASVFSLLAIAIERYITMLKMKLHN-GSNNFRLFLLISACWVISLILGGL 195
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 56.6 bits (136), Expect = 2e-09
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 15/137 (10%)
Query: 48 LFVCIFGIVANTLNII-VLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSK 106
L + + I+ N L V +++ TN + LA AD+ V + IPF + ++
Sbjct: 39 LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST----- 93
Query: 107 RDKFNYNWTMFV---LFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTT 163
+ LF + F V SI+ + +AI RYIA+ P T
Sbjct: 94 ------GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAK 147
Query: 164 VTILVGYIVCPLLCLPI 180
I + +++ + L
Sbjct: 148 GIIAICWVLSFAIGLTP 164
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 56.5 bits (136), Expect = 3e-09
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 49 FVCIFGIVANTLNII-VLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKR 107
+ + + N L I + + +++ TN +T LA ADL++ L +PF +
Sbjct: 191 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT--- 247
Query: 108 DKFNYNWT---MFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTV 164
WT + F ++ +C T SI V+A+ RY A+ P + T V
Sbjct: 248 ------WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARV 301
Query: 165 TILVGYIVCPLLCLPI 180
IL+ +IV L
Sbjct: 302 IILMVWIVSGLTSFLP 317
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 55.5 bits (133), Expect = 5e-09
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Query: 49 FVCIFGIVANTLNII-VLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKR 107
+ + + N L I + + +++ TN +T LA ADL++ L +PF +M
Sbjct: 49 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM--- 105
Query: 108 DKFNYNWTM---FVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTV 164
WT + F ++ +C T SI V+A+ RY A+ P + T V
Sbjct: 106 ------WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARV 159
Query: 165 TILVGYIVCPLLCLP 179
IL+ +IV L
Sbjct: 160 IILMVWIVSGLTSFL 174
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 55.1 bits (132), Expect = 8e-09
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 49 FVCIFGIVANTLNII-VLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKR 107
+C+ + N L + V + +++ + N + L++ADL+V +P + +M+K
Sbjct: 17 TICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSK--- 73
Query: 108 DKFNYNWTM---FVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTV 164
W++ LF + V T SI+ +L I RY +V P ++ T +
Sbjct: 74 ------WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASA 127
Query: 165 TILVGYIVCPLLCLPI 180
TIL + + L +PI
Sbjct: 128 TILGAWFLSFLWVIPI 143
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 54.4 bits (130), Expect = 1e-08
Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 9/178 (5%)
Query: 7 NNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNII-VL 65
++ P+ +S + Q Y+ + + + N L + VL
Sbjct: 5 DDDGAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVL 64
Query: 66 TRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFS 125
+ +++ TN ++ LA+ADLLV +P+ ++L + +N++ +F +
Sbjct: 65 KERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG----VWNFSRICCDVFVT-LD 119
Query: 126 QVCHTISIYLTVVLAIWRYIAVVYP---QHNRQWCTMKTTTVTILVGYIVCPLLCLPI 180
+ T SI+ ++I RY AVV P QH + + + I +++ + P+
Sbjct: 120 VMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPL 177
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 54.0 bits (130), Expect = 1e-08
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 45 YISLFVCIFGIVA-NTLNII-VLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIM 102
+ + + + IVA N L I + + + +++ TN +T LA ADL+V L +PF L +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 103 NKSKRDKFNYNWT---MFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTM 159
W ++ +C T SI V+AI RY+A+ P + T
Sbjct: 75 GT---------WLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTR 125
Query: 160 KTTTVTILVGYIVCPLLCLP 179
V I + + L+
Sbjct: 126 ARAKVIICTVWAISALVSFL 145
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 53.9 bits (129), Expect = 2e-08
Identities = 22/138 (15%), Positives = 54/138 (39%), Gaps = 7/138 (5%)
Query: 44 GYISLFVCIFGIVANTLNII-VLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIM 102
++ + + I+ N L ++ + + +++ N L LA ADL++ + + ++
Sbjct: 27 VLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI 86
Query: 103 NKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTT 162
+ + L+ + V S+ ++++ RY V P T K
Sbjct: 87 G-----YWPLGPVVCDLWLA-LDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMA 140
Query: 163 TVTILVGYIVCPLLCLPI 180
+ I +++ +L P
Sbjct: 141 GMMIAAAWVLSFILWAPA 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 7e-04
Identities = 40/246 (16%), Positives = 70/246 (28%), Gaps = 100/246 (40%)
Query: 11 TPSYDM----NVSREN-ETY-QYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIV 64
PS M N+++E + Y H + ISL N
Sbjct: 334 VPSP-MLSISNLTQEQVQDYVNKTNSHLPA------GKQVEISLV-----------N--- 372
Query: 65 LTRKEMRSPTNSILTGLAIADLLVMLDY---------------IPFTLHLNIMNKSKRDK 109
N +++G + L L+ IPF S+R K
Sbjct: 373 -------GAKNLVVSGPPQS--LYGLNLTLRKAKAPSGLDQSRIPF---------SER-K 413
Query: 110 FNYNW---TMFVLFHSNF-SQVCHTISIYLTVVLAIWR--YIAV-VYPQHNRQWCTMKTT 162
++ + FHS+ I+ L + I + VY ++
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY--DTFDGSDLRVL 471
Query: 163 TVTILVGYIVCPLLCLPIY-------------------------VTSKLKS----RIVLL 193
+ +I IV ++ LP+ +T + K R+++
Sbjct: 472 SGSI-SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 194 NQLDNN 199
LD N
Sbjct: 531 GTLDIN 536
Score = 33.9 bits (77), Expect = 0.070
Identities = 40/246 (16%), Positives = 74/246 (30%), Gaps = 72/246 (29%)
Query: 22 NETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILT-G 80
+ Y F+ + Y YH + + A TL+ ++ T + + T G
Sbjct: 166 TDDY------FEELRDLYQTYHVLVGDLIK---FSAETLSELIRTTLD----AEKVFTQG 212
Query: 81 LAIADLLVM---------LDYIPFTL---------HLNIMNKSKRDKFNYNWTMFVLFHS 122
L I + L L IP + H + K +T L
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL------LGFTPGELRSY 266
Query: 123 NFSQVCHTISIYLTVVLAI---WR--------------YIAV----VYPQHNRQWCTMKT 161
H+ + V +A W +I V YP + ++
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-PPSILE 325
Query: 162 TTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQ-L-DNNAVNYSVHPGGNQSDHNV--- 216
++ G + P+L + +++ + N L V S+ N + + V
Sbjct: 326 DSLENNEG-VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV---NGAKNLVVSG 381
Query: 217 ---TLY 219
+LY
Sbjct: 382 PPQSLY 387
Score = 30.0 bits (67), Expect = 1.0
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 192 LLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNE-IKLSITLS 250
+L+ + NN VN ++H GG + Y + F +VD L E I I
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSA-------MIFETIVDGKLKTEKIFKEINEH 1713
Query: 251 ILAGTKVTTMSP--YMTRPTRTTPPCILSTS 279
T T S ++ T+ T P +
Sbjct: 1714 S---TSYTFRSEKGLLSA-TQFTQPALTLME 1740
Score = 28.5 bits (63), Expect = 3.7
Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 53/147 (36%)
Query: 26 QYCGEHFQSFQMSYDHY---------------HGYISLFVCIFGIVA-NTLNIIVLTRKE 69
Q G M D Y H + I IV N +N+ + E
Sbjct: 1627 QEQG-------MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 70 MRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKF----NYNWT--MF-----V 118
G I + +Y + K K +K N + T F +
Sbjct: 1680 ---------KGKRIRE-----NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 119 LFHSNFSQVCHTISIYLTVVLAIWRYI 145
L + F+Q + + A + +
Sbjct: 1726 LSATQFTQPA----L-TLMEKAAFEDL 1747
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.016
Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 33/158 (20%)
Query: 3 CNLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNI 62
++ P Y + Y + G H ++ + ++LF +F L+
Sbjct: 457 KTFDSDDLIPPYL-----DQYFYSHIGHHLKNIEHP-----ERMTLFRMVF------LDF 500
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVML----DYIPFTLHLNIMNKSKRDKFNYNWTMFV 118
L +K +R + + +I + L L YI N K ++ F+
Sbjct: 501 RFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYI-------CDNDPKYERLVNAILDFL 552
Query: 119 LFHSNFSQVCHTISIYLTVV-LAIWRYIAVVYPQHNRQ 155
+ S Y ++ +A+ ++ + ++Q
Sbjct: 553 P---KIEENLI-CSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 34.1 bits (77), Expect = 0.056
Identities = 35/200 (17%), Positives = 57/200 (28%), Gaps = 59/200 (29%)
Query: 31 HFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVML 90
H F+ Y L V V N K+++ SIL+ I +++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDN------FDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 91 DYIPFTLHL--NIMNKSKR--DKF-------NYNWTMFVLFHSNFSQVCHTISIYLTVVL 139
D + TL L +++K + KF NY + M S S+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-----SPIKTEQRQPSMMTR--- 110
Query: 140 AIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNN 199
YI Q +R + + Y V SR+ +L
Sbjct: 111 ---MYIE----QRDRLY-----NDNQVFAKYNV---------------SRLQPYLKLRQA 143
Query: 200 AVNYSVHPGGNQSDHNVTLY 219
+ NV +
Sbjct: 144 LLELRPAK-------NVLID 156
Score = 29.1 bits (64), Expect = 2.0
Identities = 46/313 (14%), Positives = 85/313 (27%), Gaps = 99/313 (31%)
Query: 4 NLFNNTCTPSY-DMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNI 62
L+N+ + NVSR + Y + + + V I G
Sbjct: 118 RLYNDN--QVFAKYNVSRL-QPYLKLRQALLELRPA---------KNVLIDG-------- 157
Query: 63 IVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLH-LNIMNKSKRD-----------KF 110
+ + + V + F + LN+ N + + +
Sbjct: 158 -------VLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 111 NYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAV------VYPQHNRQW------C- 157
+ NWT SN H+I L +L Y V Q+ + W C
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCK 267
Query: 158 TMKTT------------------------------TVTILVGYIVCPLLCLPIYV--TSK 185
+ TT ++L+ Y+ C LP V T+
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 186 LK-SRIVLLNQLDNNAVNYSVHPGGNQSDHNVTL-YDETNSYNATLYFIDLV----DYNL 239
+ S I + + H ++ + + F L ++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 240 TNEIKLSITLSIL 252
+I LS++
Sbjct: 388 P-----TILLSLI 395
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Geobacter metallireducens gs-15}
Length = 112
Score = 28.2 bits (63), Expect = 1.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 26 QYCGEHFQSFQMSYDH 41
YCGE F +++ DH
Sbjct: 39 HYCGEIFPPEELTMDH 54
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A
{Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB:
2f9t_A*
Length = 271
Score = 27.0 bits (60), Expect = 7.4
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 51 CIFGIVANTLNIIVLTRKEMRSPTNSILTG-LA--IADLLVMLDYIPF-TLH 98
C+ + + + + LTG A + D L +P
Sbjct: 211 CLLMLRGFVREQYAMACELLGPDCEIFLTGGDAELVRDELAGARIMPDLVFV 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.417
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,101,224
Number of extensions: 225627
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 28
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.2 bits)