RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3988
         (283 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 48  LFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSK 106
             + + G   N L + V  + K++R+P N IL  LA+ADL ++      TL+ ++     
Sbjct: 45  FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV 104

Query: 107 RDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTT 162
                 N   F         +   + + +   + + + ++      N     +  T
Sbjct: 105 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT 160


>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit
           VIa {Cow (Bos taurus) [TaxId: 9913]}
          Length = 84

 Score = 24.7 bits (54), Expect = 5.1
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 27/78 (34%)

Query: 46  ISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKS 105
           ++  + +  +   TLN  + +    R                    +IP+  HL I  K 
Sbjct: 19  LTFGLALPSVALCTLNSWLHSGHRER------------------PAFIPYH-HLRIRTK- 58

Query: 106 KRDKFNYNWT--MFVLFH 121
                 ++W       FH
Sbjct: 59  -----PFSWGDGNHTFFH 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,014,451
Number of extensions: 43895
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 5
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.9 bits)