BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3994
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UPN6|SCAF8_HUMAN Protein SCAF8 OS=Homo sapiens GN=SCAF8 PE=1 SV=1
Length = 1271
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/135 (74%), Positives = 117/135 (86%), Gaps = 1/135 (0%)
Query: 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKV 60
M+ +KTFN EL SL D KPPISKAK+T IT++AI+AIKFYKHVVQSVEKFI KCKPEYKV
Sbjct: 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 NVFKSEIIQPLLDMA 135
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 91/130 (70%), Gaps = 4/130 (3%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQDA +
Sbjct: 468 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFR 527
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ K D +
Sbjct: 528 ALQKLSSGSYKIGSKVIKIAWALNKGVK-TEYKQFWDVDLGVTYIPWEKV-KVDDLEGFA 585
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 586 EGGMIDQETV 595
>sp|Q6DID3|SCAF8_MOUSE Protein SCAF8 OS=Mus musculus GN=Scaf8 PE=1 SV=1
Length = 1268
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/135 (74%), Positives = 117/135 (86%), Gaps = 1/135 (0%)
Query: 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKV 60
M+ +KTFN EL SL D KPPISKAK+T IT++AI+AIKFYKHVVQSVEKFI KCKPEYKV
Sbjct: 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 NVFKSEIIQPLLDMA 135
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 91/130 (70%), Gaps = 4/130 (3%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQD+ +
Sbjct: 468 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFR 527
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ K D D
Sbjct: 528 ALQKLSSGSYKIGSKVIKIAWALNKGVK-TEYKQFWDVDLGVTYIPWEKV-KVDDLDGFA 585
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 586 EGGMIDQETV 595
>sp|O95104|SFR15_HUMAN Splicing factor, arginine/serine-rich 15 OS=Homo sapiens GN=SCAF4
PE=1 SV=3
Length = 1147
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/135 (74%), Positives = 113/135 (83%), Gaps = 1/135 (0%)
Query: 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKV 60
MD + FNQEL SL D KPPIS+AK+ IT++AI+AIK YKHVVQ VEKFI KCKPEYKV
Sbjct: 1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 GVFKIEIIQPLLDMA 135
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 91/136 (66%), Gaps = 5/136 (3%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q + ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 497 QVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 556
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 557 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADYKQYWDVELGVTYIPWDKVKPE-ELES 614
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 615 FCEGGMLDSDTLNPDW 630
>sp|Q63623|SCAF8_RAT Protein SCAF8 OS=Rattus norvegicus GN=Scaf8 PE=1 SV=1
Length = 1268
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 115/135 (85%), Gaps = 1/135 (0%)
Query: 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKV 60
M+ +KTFN EL SL D KPPISKAK+T IT++AI+AIKFYKHVVQSVEKFI KCKPEYKV
Sbjct: 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQ Q+KDV PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQVGQEKDVCAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 NVFKSEIIQPLLDMA 135
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 91/130 (70%), Gaps = 4/130 (3%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQD+ +
Sbjct: 468 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFR 527
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ K D D
Sbjct: 528 ALQKLSSGSYKIGSKVIKIAWALNKGVK-TEYKQFWDVDLGVTYIPWEKV-KVDDLDGFA 585
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 586 EGGMIDQETV 595
>sp|Q63627|SFR15_RAT Splicing factor, arginine/serine-rich 15 (Fragment) OS=Rattus
norvegicus GN=Scaf4 PE=2 SV=1
Length = 1048
Score = 117 bits (294), Expect = 7e-26, Method: Composition-based stats.
Identities = 59/136 (43%), Positives = 92/136 (67%), Gaps = 5/136 (3%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q ++ ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 411 QIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 470
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 471 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADFKQYWDVELGVTYIPWDKVKAE-ELES 528
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 529 FCEGGMLDSDTLNPDW 544
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 105 DKSKIIRVLNLWQKNEVFT---PDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTL 161
D+S+ +R + + N V P I P + P QA G + +TT+
Sbjct: 227 DESEQLRAMT--EMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTI 284
Query: 162 WIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQG 221
++G L V EE L F YG++V + ++ + C FV R A +AL L T+L G
Sbjct: 285 FVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGG 344
Query: 222 KTITLAWAPGKGMKDKD 238
++I L+W K D
Sbjct: 345 QSIRLSWGRSPSSKQTD 361
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL 214
++ +TT+++G L V +E+L F E+G++VS+ + +GC FV R +A +AL KL
Sbjct: 300 DIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKL 359
Query: 215 KNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQ 246
T + +T+ L+W G+ +K +D + Q
Sbjct: 360 NGTVIGKQTVRLSW--GRNPANKQPRDKYGNQ 389
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
++T+++G LSK V EEEL F +G++V + + P +GC FV RQ A A+ +L+
Sbjct: 301 ANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQG 360
Query: 217 TKLQGKTITLAWA 229
L I L+W
Sbjct: 361 YPLGNSRIRLSWG 373
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKALY 212
TTLW+G L V E + + G V + LI R G FV +A+ A+
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM- 151
Query: 213 KLKNTKLQGKT--ITLAWAPGKGMKDKD 238
+ N + G L WA G G+++K
Sbjct: 152 SMNNKPIPGTNHLFKLNWASGGGLREKS 179
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+TT+++G L V +E+L F E+G++VS+ + +GC FV R +A +AL KL T
Sbjct: 305 NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT 364
Query: 218 KLQGKTITLAWA 229
+ +T+ L+W
Sbjct: 365 VIGKQTVRLSWG 376
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 147 IQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQD 206
Q +G + +TT+++G + + V E++L FG++G++V + + + C FV R
Sbjct: 266 TQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRAC 325
Query: 207 AAKALYKLKNTKLQGKTITLAWA 229
A +AL L T+L G++I L+W
Sbjct: 326 AEQALSVLNGTQLGGQSIRLSWG 348
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMN 202
AR G E++ T L++ +L + + ++EL FG+YG++V N++ PRG AFV N
Sbjct: 178 ARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFN 237
Query: 203 RRQDAAKALYKLKNTKLQGK----TITLAWAPGK 232
+R++A +A+ L N +G T+ LA GK
Sbjct: 238 KREEAQEAISALNNVIPEGASQPLTVRLAEEHGK 271
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMN 202
AR G E + T L++ +LS+ + +E+L FG+YG +V N++ PRG AF+ N
Sbjct: 154 ARPGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFN 213
Query: 203 RRQDAAKALYKLKNTKLQGKTITLA 227
+R++A +A+ L N +G T L
Sbjct: 214 KREEAQEAISALNNVIPEGGTQPLT 238
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMN 202
AR G E++ T L++ +L + + ++EL FG+YG++V N++ PRG AFV N
Sbjct: 161 ARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFN 220
Query: 203 RRQDAAKALYKLKNTKLQGK----TITLAWAPGK 232
+R++A +A+ L N +G T+ LA GK
Sbjct: 221 KREEAQEAISALNNVIPEGASQPLTVRLAEEHGK 254
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAA 208
A G + +TT+++G L V ++EL FG++G+++ + + P + C FV + A
Sbjct: 250 ANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAE 309
Query: 209 KALYKLKNTKLQGKTITLAW--APGKGMKDKDWK 240
AL L T+L G++I L+W +P K W
Sbjct: 310 HALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWN 343
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
+TT+++G L V +EEL +F ++G+VVS+ + +GC FV + R A +A+ KL
Sbjct: 293 SNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSG 352
Query: 217 TKLQGKTITLAWA 229
+ + + L+W
Sbjct: 353 AIIGKQAVRLSWG 365
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC------AFVCMNRRQDAAKALYK 213
T+WIG L + + E L F + G+V+S+ +I + FV N A K L
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS 144
Query: 214 LKNTKL 219
T +
Sbjct: 145 YNGTMM 150
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
++T+++G L V EE+L F ++G+VVS+ + +GC FV RQ A +A+ L T
Sbjct: 326 NSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGT 385
Query: 218 KLQGKTITLAWA 229
+ T+ L+W
Sbjct: 386 VIGKNTVRLSWG 397
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMN 202
AR G E++ T L++ +L + + +++L FG+YG +V N++ PRG AFV N
Sbjct: 186 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFN 245
Query: 203 RRQDAAKALYKLKNTKLQGK----TITLAWAPGK 232
+R++A +A+ L N +G T+ LA GK
Sbjct: 246 KREEAQEAISALNNVIPEGASQPLTVRLAEEHGK 279
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMN 202
AR G E++ T L++ +L + + +++L FG+YG +V N++ PRG AFV N
Sbjct: 201 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 260
Query: 203 RRQDAAKALYKLKNTKLQGKTITLA 227
+R++A +A+ L N +G + L+
Sbjct: 261 KREEAQEAISALNNVIPEGGSQPLS 285
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMN 202
AR G E++ T L++ +L + + +++L FG+YG +V N++ PRG AFV N
Sbjct: 203 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 262
Query: 203 RRQDAAKALYKLKNTKLQGK----TITLAWAPGK 232
+R++A +A+ L N +G ++ LA GK
Sbjct: 263 KREEAQEAISALNNVIPEGGSQPLSVRLAQEHGK 296
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L N
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDN 133
Query: 217 TKLQGK-------TITLAWAPGKG 233
T+ QGK T L APG G
Sbjct: 134 TEFQGKRMHVQLSTSRLRTAPGMG 157
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L N
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDN 133
Query: 217 TKLQGK-------TITLAWAPGKG 233
T+ QGK T L APG G
Sbjct: 134 TEFQGKRMHVQLSTSRLRTAPGMG 157
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L N
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDN 133
Query: 217 TKLQGK-------TITLAWAPGKG 233
T+ QGK T L APG G
Sbjct: 134 TEFQGKRMHVQLSTSRLRTAPGMG 157
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa
subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT-K 218
TL+IG L+ + E++L D F +G++ SI ++ R CAFV R+ A KA +L N
Sbjct: 229 TLYIGGLNNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLV 288
Query: 219 LQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSY---IPYDRLSKEIDYDYLEDGGVFDED 275
++G + L W GK K D Q V++ +P +S++ D + G+ +
Sbjct: 289 IKGIRLKLMW--GKPQAPKPEDDEAGRQGHVAHGGMLPRAVISQQQSGDQPQPPGMEGQQ 346
Query: 276 TVP 278
P
Sbjct: 347 QAP 349
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L N
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDN 133
Query: 217 TKLQGK-------TITLAWAPGKG 233
T+ QGK T L APG G
Sbjct: 134 TEFQGKRMHVQLSTSRLRTAPGMG 157
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L N
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDN 133
Query: 217 TKLQGK-------TITLAWAPGKG 233
T+ QGK T L APG G
Sbjct: 134 TEFQGKRMHVQLSTSRLRTAPGMG 157
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+TT+++G L V ++ L + F +YG++V + + + C FV + + A +AL L
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGV 319
Query: 218 KLQGKTITLAWA 229
+L G T+ L+W
Sbjct: 320 QLGGTTVRLSWG 331
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
ST L +G++S +EL F EYG VV +++ + AFV M R +DA +A+ L NT
Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIV--KDYAFVHMERVEDAMEAISGLDNT 134
Query: 218 KLQGK-------TITLAWAPGKGMKDKDWK 240
QGK T L APG G + ++
Sbjct: 135 AFQGKLMSVKLSTSRLRTAPGMGERTGCYR 164
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
+++G+LS EE+ F +YG + +++ + FV M+ + +A +A+ L + L
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV--KNFGFVHMDSKSEADEAIQNLHHYMLN 61
Query: 221 GKTITLAWAPGK 232
G + + + GK
Sbjct: 62 GMAMNVEMSKGK 73
>sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis
thaliana GN=At1g07360 PE=2 SV=1
Length = 481
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT-K 218
TL++G L+ + E+++ D F +G++ SI ++ + CAFV R+ A KA +L N
Sbjct: 229 TLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 219 LQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSY 251
+ G+ + L W G+ D+D + Q GV++
Sbjct: 289 INGQRLKLTW--GRPKPDQDGAN---QQGGVAH 316
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L NT
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNT 134
Query: 218 KLQGK-------TITLAWAPGKG 233
+ QGK T L APG G
Sbjct: 135 EFQGKRMHVQLSTSRLRTAPGMG 157
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L NT
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNT 134
Query: 218 KLQGK-------TITLAWAPGKG 233
+ QGK T L APG G
Sbjct: 135 EFQGKRMHVQLSTSRLRTAPGMG 157
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L NT
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNT 134
Query: 218 KLQGK-------TITLAWAPGKG 233
+ QGK T L APG G
Sbjct: 135 EFQGKRMHVQLSTSRLRTAPGMG 157
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
ST L +G++S +EL F EYG V+ +++ + AFV M R +DA +A+ L NT
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNT 134
Query: 218 KLQGK-------TITLAWAPGKG 233
+ QGK T L APG G
Sbjct: 135 EFQGKRMHVQLSTSRLRTAPGMG 157
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
L+IG+L + E+E+ F +YG V+ ++I G FV + + A A+ L + KL
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG--FVHIEDKTAAEDAIRNLHHYKLH 61
Query: 221 GKTITLAWAPGK 232
G I + + K
Sbjct: 62 GVNINVEASKNK 73
>sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa
subsp. japonica GN=Os07g0281000 PE=2 SV=1
Length = 486
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT-K 218
TL+IG L V E++L D F +G++ +I ++ R CAFV R+ A KA +L N
Sbjct: 229 TLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLV 288
Query: 219 LQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSY 251
++G + L W GK K +D Q V++
Sbjct: 289 IKGVRLKLMW--GKPQAPKPEEDEAGRQGHVAH 319
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
S LW+G L+ E +L++ FG YGD+ I + RG AF+ ++A A L+
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 218 KLQGKTITLAWA-PGKGMK 235
L G I + +A P K K
Sbjct: 77 NLNGSQIKIEYARPAKPCK 95
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKL 219
+LW+G + V +++L + F ++G + + R AF+ DA +A + +
Sbjct: 96 SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNGKPM 154
Query: 220 QGKTITLAWAPGKGMKDKDWKDFWEVQDG 248
G + + + + K + W ++ ++G
Sbjct: 155 GGSFLRVDFLRSQAPKKEQWAGSYDNRNG 183
>sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis
thaliana GN=At2g29580 PE=2 SV=1
Length = 483
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 145 AEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRR 204
E+ E+ TL++G L+ V E+++ D F +G++ SI ++ + CAFV R
Sbjct: 214 GEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTR 273
Query: 205 QDAAKALYKLKNT-KLQGKTITLAWA 229
+ A KA +L N + G+ + L W
Sbjct: 274 EGAEKAAEELSNRLVVNGQRLKLTWG 299
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI-----PPRGCAFVCMNRRQDAAKALYK 213
T ++I +L + E+E SD FG++G++ S++L+ PRG FV + A KA+ +
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 214 LKNTKLQGKTITLAWAPGKGMKDKDWKDFWE 244
L + + +GK + + A K ++++ + +E
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYE 351
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINL----IPPR--GCAFVCMNRRQDAAKA 210
S +L++G L V E L + F G V SI + + R G A+V + +D KA
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 211 LYKLKNTKLQGKTITLAWA 229
L +L T ++G+ + W+
Sbjct: 138 LDELNYTLIKGRPCRIMWS 156
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINL-IPPR--GCAFVCMNRRQDAAK 209
+ + S T+++G+L ++E E+ D F +YG VV I+L +PPR G AFV + +DA
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 210 ALYKLKNTKLQGKTITLAWAPGKGMKDKD 238
A++ G + + A G G + D
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHG-GRRSSD 88
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
+ T+++G + V +E+L F ++G+VVS+ + +GC FV R+ A A+ L
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG 378
Query: 217 TKLQGKTITLAWA 229
T + T+ L+W
Sbjct: 379 TVIGKNTVRLSWG 391
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTK 218
TTL+IG L + V + EL + F ++G++ +I ++ + CAF+ RQ A A K N
Sbjct: 232 TTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKSFNKL 291
Query: 219 -LQGKTITLAWAPGKGMKDKDWKD 241
+ G+ + + W + + K KD
Sbjct: 292 IINGRRLNVKWGRSQAARGKGEKD 315
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTK 218
TTL++G L + E EL + F ++G++ +I ++ + CAF+ RQ A A K N
Sbjct: 232 TTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKSFNKL 291
Query: 219 L-QGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIP 253
+ G+ + + W + + K+ + G+ + P
Sbjct: 292 IVNGRRLNVKWGRSQAARGKEREHDGSGDPGMKFEP 327
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR---------GCAFVCMNR 203
V + +T L++G+++ + EE L FG +G + S+ ++ PR C FV
Sbjct: 268 VGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMN 327
Query: 204 RQDAAKALYKLKNTKLQGKTITLAWA 229
R+DA +AL L + + L W
Sbjct: 328 RRDAERALKNLNGKMIMSFEMKLGWG 353
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR---------GCAFVCMNR 203
V + +T L++G+++ + EE L FG +G + S+ ++ PR C FV
Sbjct: 267 VGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMN 326
Query: 204 RQDAAKALYKLKNTKLQGKTITLAWA 229
R+DA +AL L + + L W
Sbjct: 327 RRDAERALKNLNGKMIMSFEMKLGWG 352
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR---------GCAFVCMNR 203
V + +T L++G+++ + EE L FG +G + S+ ++ PR C FV
Sbjct: 268 VGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMN 327
Query: 204 RQDAAKALYKLKNTKLQGKTITLAWA 229
R+DA +AL L + + L W
Sbjct: 328 RRDAERALKNLNGKMIMSFEMKLGWG 353
>sp|Q08920|NCBP2_YEAST Nuclear cap-binding protein subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CBC2 PE=1 SV=1
Length = 208
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINL------IPPRGCAFVCMNRRQDA 207
E+M S+T+++G+LS EE++ + F + G + I + P G F+ + +A
Sbjct: 41 ESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEA 100
Query: 208 AKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL L +TKL KTIT+ PG +D + F + G ++S E+ +D+
Sbjct: 101 LNALKYLSDTKLDEKTITIDLDPGF----EDGRQFGRGKSG------GQVSDELRFDFDA 150
Query: 268 DGGVF 272
G F
Sbjct: 151 SRGGF 155
>sp|A8Y1R8|NCBP2_CAEBR Nuclear cap-binding protein subunit 2 OS=Caenorhabditis briggsae
GN=ncbp-2 PE=3 SV=2
Length = 157
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMNRRQDAAKAL 211
S TL++G+LS +E+++ + FG GDV + + P G FV R+DA AL
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELAL 95
Query: 212 YKLKNTKLQGKTITLAWAPG 231
+ NT++ + I W G
Sbjct: 96 QNISNTRMDDRVIRADWDAG 115
>sp|Q93594|NCBP2_CAEEL Nuclear cap-binding protein subunit 2 OS=Caenorhabditis elegans
GN=ncbp-2 PE=3 SV=2
Length = 158
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMNRRQDAAKAL 211
S TL++G+LS +E+++ + FG GDV + + P G FV R+DA AL
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELAL 95
Query: 212 YKLKNTKLQGKTITLAWAPG 231
+ NT++ + I W G
Sbjct: 96 QNISNTRMDDRVIRADWDAG 115
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTK 218
TTL++G L + E EL + F ++G++ +I ++ + CAF+ RQ A A K N
Sbjct: 232 TTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKSFNKL 291
Query: 219 L-QGKTITLAWAPGKGMKDKD 238
+ G+ + + W + + K+
Sbjct: 292 IVNGRRLNVKWGRSQAARGKE 312
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKL 219
T++ G ++ + E+ + TF +G ++ I + P +G +FV N + AA A+ + T +
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
Query: 220 QGKTITLAWA 229
+G + W
Sbjct: 275 EGHVVKCYWG 284
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTK 218
TTL++G L + E +L + F ++G++ +I ++ + CAF+ RQ A A K N
Sbjct: 232 TTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKL 291
Query: 219 L-QGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIP 253
+ G+ + + W + + K+ + G+ P
Sbjct: 292 IVNGRRLNVKWGRSQAARGKEKDKEGTTESGIKLEP 327
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 146 EIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVC 200
E +A G T ++I + + + +E L D FG++G +S+ ++ +G FV
Sbjct: 178 EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 201 MNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFWE 244
R +DA KA+ ++ +L GK I + A K + + K +E
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSI----NLIPPR--GCAFVCMNRRQDAAKALY 212
+L++G L E L + F G ++SI ++I R G A+V + DA +AL
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 213 KLKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED 268
+ ++GK + + W+ +D + GV I L K ID L D
Sbjct: 71 TMNFDVIKGKPVRIMWS---------QRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,977,139
Number of Sequences: 539616
Number of extensions: 4481790
Number of successful extensions: 10943
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 391
Number of HSP's that attempted gapping in prelim test: 10498
Number of HSP's gapped (non-prelim): 689
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)