Query psy3994
Match_columns 282
No_of_seqs 312 out of 2668
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 22:39:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0132|consensus 100.0 1E-56 2.2E-61 412.6 18.6 279 1-282 1-542 (894)
2 cd03562 CID CID (CTD-Interacti 99.9 2.8E-21 6E-26 146.5 10.9 111 5-123 2-113 (114)
3 KOG0148|consensus 99.8 3.1E-20 6.7E-25 153.7 8.0 147 79-233 62-239 (321)
4 smart00582 RPR domain present 99.8 1.8E-19 4E-24 138.0 8.9 119 6-131 1-120 (121)
5 PLN03134 glycine-rich RNA-bind 99.7 5.9E-17 1.3E-21 127.4 11.6 81 155-235 31-117 (144)
6 TIGR01659 sex-lethal sex-letha 99.7 2.9E-16 6.3E-21 140.3 10.5 115 154-276 103-224 (346)
7 KOG0148|consensus 99.7 2.6E-16 5.6E-21 130.6 8.4 175 78-279 5-199 (321)
8 TIGR01659 sex-lethal sex-letha 99.7 3.4E-17 7.3E-22 146.3 2.9 77 157-233 192-276 (346)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.5E-15 3.2E-20 137.1 10.4 107 158-272 3-116 (352)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2.5E-15 5.4E-20 135.7 11.3 76 158-233 269-350 (352)
11 PF00076 RRM_1: RNA recognitio 99.6 3.5E-15 7.5E-20 102.4 7.6 65 161-225 1-70 (70)
12 KOG2669|consensus 99.6 5.9E-15 1.3E-19 127.5 8.8 128 5-140 7-135 (325)
13 TIGR01645 half-pint poly-U bin 99.6 1.1E-15 2.4E-20 144.0 3.5 77 157-233 203-285 (612)
14 KOG0121|consensus 99.6 6.7E-15 1.5E-19 109.1 6.4 76 157-232 35-116 (153)
15 KOG0107|consensus 99.6 1.3E-14 2.8E-19 113.3 8.1 77 158-234 10-87 (195)
16 PLN03120 nucleic acid binding 99.6 3E-14 6.4E-19 120.1 10.5 76 158-234 4-82 (260)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.3E-14 9.4E-19 132.6 11.8 118 157-274 1-125 (481)
18 KOG0111|consensus 99.5 9.1E-15 2E-19 118.0 5.2 87 158-244 10-102 (298)
19 TIGR01645 half-pint poly-U bin 99.5 4.5E-14 9.9E-19 133.1 10.5 122 157-278 106-237 (612)
20 KOG0125|consensus 99.5 2.5E-14 5.5E-19 121.8 7.8 76 157-232 95-174 (376)
21 TIGR01648 hnRNP-R-Q heterogene 99.5 9.5E-14 2.1E-18 130.7 10.7 75 157-233 232-308 (578)
22 KOG0122|consensus 99.5 1.1E-13 2.4E-18 113.6 8.8 76 157-232 188-269 (270)
23 PLN03213 repressor of silencin 99.5 1.5E-13 3.3E-18 122.7 9.3 77 156-232 8-88 (759)
24 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 5.7E-13 1.2E-17 125.0 13.5 77 156-232 273-351 (481)
25 TIGR01628 PABP-1234 polyadenyl 99.5 1.8E-14 4E-19 137.8 3.4 114 158-274 88-207 (562)
26 PF14259 RRM_6: RNA recognitio 99.5 2.6E-13 5.6E-18 93.4 8.3 65 161-225 1-70 (70)
27 KOG0145|consensus 99.5 7.6E-14 1.7E-18 115.4 6.2 112 101-234 91-211 (360)
28 KOG0117|consensus 99.5 2.5E-13 5.5E-18 120.0 9.3 110 156-278 81-199 (506)
29 KOG2071|consensus 99.5 1.6E-13 3.4E-18 126.1 8.1 105 3-117 5-110 (579)
30 KOG0144|consensus 99.5 1.3E-13 2.8E-18 121.3 7.2 83 156-238 122-212 (510)
31 TIGR01648 hnRNP-R-Q heterogene 99.4 9.7E-13 2.1E-17 123.9 12.8 74 157-230 57-136 (578)
32 TIGR01628 PABP-1234 polyadenyl 99.4 6.1E-13 1.3E-17 127.4 11.4 111 159-275 1-118 (562)
33 KOG0117|consensus 99.4 2.9E-13 6.2E-18 119.6 7.9 78 157-236 258-335 (506)
34 smart00362 RRM_2 RNA recogniti 99.4 1.2E-12 2.6E-17 89.4 8.9 68 160-227 1-72 (72)
35 KOG0105|consensus 99.4 5.2E-13 1.1E-17 105.2 7.9 76 157-232 5-83 (241)
36 TIGR01622 SF-CC1 splicing fact 99.4 6.2E-13 1.3E-17 124.2 9.8 75 157-231 185-265 (457)
37 KOG0145|consensus 99.4 6.9E-13 1.5E-17 109.8 8.8 90 153-242 36-131 (360)
38 PF13893 RRM_5: RNA recognitio 99.4 1.5E-12 3.2E-17 85.6 8.8 55 175-229 1-56 (56)
39 KOG0113|consensus 99.4 2.2E-12 4.7E-17 108.8 11.3 78 157-234 100-183 (335)
40 KOG0144|consensus 99.4 6.5E-13 1.4E-17 117.0 7.6 120 149-276 25-155 (510)
41 PLN03121 nucleic acid binding 99.4 1.8E-12 3.9E-17 107.7 9.7 75 157-232 4-81 (243)
42 KOG0149|consensus 99.4 5.3E-13 1.1E-17 109.2 6.3 74 157-231 11-90 (247)
43 TIGR01642 U2AF_lg U2 snRNP aux 99.4 4.4E-12 9.6E-17 120.1 12.8 77 156-232 293-375 (509)
44 KOG4207|consensus 99.4 6.2E-13 1.3E-17 106.6 5.4 73 158-230 13-91 (256)
45 KOG0114|consensus 99.4 4.6E-12 9.9E-17 90.7 9.0 76 157-232 17-95 (124)
46 TIGR01622 SF-CC1 splicing fact 99.4 4.7E-12 1E-16 118.3 11.4 121 155-276 86-217 (457)
47 KOG0153|consensus 99.3 3.5E-12 7.5E-17 109.7 8.7 80 152-231 222-302 (377)
48 KOG0109|consensus 99.3 2.4E-12 5.2E-17 108.2 7.4 73 159-233 3-75 (346)
49 KOG0130|consensus 99.3 3.1E-12 6.8E-17 95.9 6.7 83 152-234 66-154 (170)
50 KOG0126|consensus 99.3 3.5E-13 7.7E-18 105.9 1.4 76 158-233 35-116 (219)
51 cd00590 RRM RRM (RNA recogniti 99.3 1.8E-11 4E-16 83.8 9.1 69 160-228 1-74 (74)
52 KOG0131|consensus 99.3 4.7E-12 1E-16 99.7 6.2 74 157-230 8-87 (203)
53 KOG0127|consensus 99.3 3.1E-11 6.6E-16 109.4 10.0 79 155-233 114-197 (678)
54 smart00360 RRM RNA recognition 99.2 3.2E-11 7E-16 81.8 7.6 65 163-227 1-71 (71)
55 KOG0131|consensus 99.2 2.8E-11 6.1E-16 95.4 7.6 116 101-237 59-182 (203)
56 KOG0124|consensus 99.2 8.6E-12 1.9E-16 107.8 4.9 114 159-277 114-242 (544)
57 COG0724 RNA-binding proteins ( 99.2 4.4E-11 9.6E-16 103.0 9.3 73 158-230 115-193 (306)
58 KOG0123|consensus 99.2 6.6E-11 1.4E-15 106.6 9.7 109 101-236 45-157 (369)
59 KOG0108|consensus 99.2 4.9E-11 1.1E-15 108.5 8.3 77 159-235 19-101 (435)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.3E-10 2.9E-15 110.0 10.7 76 154-230 171-258 (509)
61 KOG0146|consensus 99.1 4.7E-11 1E-15 99.4 5.2 82 152-233 279-366 (371)
62 KOG0109|consensus 99.1 7.4E-11 1.6E-15 99.3 5.9 75 156-232 76-150 (346)
63 KOG0146|consensus 99.1 6.9E-11 1.5E-15 98.4 5.4 79 157-235 18-104 (371)
64 KOG0110|consensus 99.1 1.3E-10 2.7E-15 108.4 4.8 127 94-233 561-694 (725)
65 KOG4206|consensus 99.1 4E-10 8.7E-15 92.1 7.2 76 158-233 9-91 (221)
66 smart00361 RRM_1 RNA recogniti 99.0 9.4E-10 2E-14 75.6 7.1 56 172-227 2-70 (70)
67 KOG0147|consensus 99.0 4.3E-10 9.4E-15 102.2 5.9 73 160-232 280-358 (549)
68 KOG0110|consensus 99.0 1.1E-09 2.4E-14 102.2 8.1 119 159-279 516-647 (725)
69 PF04818 CTD_bind: RNA polymer 99.0 3.2E-10 6.9E-15 76.5 2.3 63 59-123 1-64 (64)
70 KOG0151|consensus 98.9 1.4E-09 3.1E-14 101.3 6.9 79 152-230 168-255 (877)
71 KOG0127|consensus 98.9 1.6E-09 3.5E-14 98.4 6.6 120 158-279 5-151 (678)
72 KOG4661|consensus 98.9 3.7E-09 8E-14 96.5 7.2 78 155-232 402-485 (940)
73 KOG0415|consensus 98.8 7.2E-09 1.6E-13 89.6 6.1 82 151-232 232-319 (479)
74 KOG4212|consensus 98.8 2E-08 4.3E-13 89.2 7.9 74 158-231 44-123 (608)
75 KOG4208|consensus 98.8 2.7E-08 5.8E-13 80.3 8.0 78 155-232 46-130 (214)
76 KOG4212|consensus 98.8 1.2E-08 2.6E-13 90.6 6.4 77 153-229 531-608 (608)
77 KOG0123|consensus 98.7 4.1E-08 9E-13 88.6 9.2 72 159-233 2-76 (369)
78 KOG0124|consensus 98.7 3.5E-08 7.6E-13 85.8 6.3 75 158-232 210-290 (544)
79 KOG1457|consensus 98.6 1.7E-07 3.7E-12 76.5 8.6 77 157-233 33-119 (284)
80 KOG4660|consensus 98.6 2E-08 4.3E-13 91.7 3.4 71 155-225 72-143 (549)
81 KOG4205|consensus 98.6 3.8E-08 8.1E-13 86.2 4.9 79 157-236 5-89 (311)
82 KOG0106|consensus 98.6 4.9E-08 1.1E-12 80.6 3.9 71 159-231 2-72 (216)
83 KOG0116|consensus 98.5 2.5E-07 5.4E-12 84.1 7.5 74 158-232 288-367 (419)
84 KOG0533|consensus 98.4 6.6E-07 1.4E-11 75.5 7.7 77 157-233 82-163 (243)
85 PF11608 Limkain-b1: Limkain b 98.4 1E-06 2.2E-11 61.1 7.1 70 159-232 3-77 (90)
86 KOG1190|consensus 98.4 1.4E-06 3.1E-11 77.0 9.5 75 158-232 297-373 (492)
87 KOG4205|consensus 98.4 4E-07 8.7E-12 79.8 5.3 78 157-235 96-179 (311)
88 PF12243 CTK3: CTD kinase subu 98.4 1.7E-06 3.6E-11 67.0 8.0 120 5-129 8-130 (139)
89 PF04059 RRM_2: RNA recognitio 98.3 3.4E-06 7.4E-11 61.2 7.8 75 159-233 2-88 (97)
90 KOG1548|consensus 98.3 1.7E-06 3.8E-11 74.9 6.9 75 157-231 133-220 (382)
91 KOG4209|consensus 98.3 1.4E-06 3.1E-11 73.5 6.1 76 156-232 99-180 (231)
92 KOG4454|consensus 98.2 5.6E-07 1.2E-11 73.3 1.9 75 157-231 8-86 (267)
93 KOG4206|consensus 98.0 3.3E-05 7.1E-10 63.6 7.8 77 154-230 142-220 (221)
94 KOG0226|consensus 97.9 7.8E-06 1.7E-10 68.2 3.5 75 158-232 190-270 (290)
95 KOG1457|consensus 97.9 1.2E-05 2.7E-10 65.8 4.1 68 153-220 205-274 (284)
96 PF08777 RRM_3: RNA binding mo 97.9 3.1E-05 6.7E-10 57.4 5.8 70 159-228 2-76 (105)
97 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.3E-05 7.2E-10 49.7 4.9 52 159-211 2-53 (53)
98 COG5175 MOT2 Transcriptional r 97.8 3.5E-05 7.6E-10 66.8 5.9 75 157-231 113-202 (480)
99 KOG0106|consensus 97.8 1.4E-05 2.9E-10 66.3 3.1 73 155-229 96-168 (216)
100 KOG4211|consensus 97.8 0.0002 4.2E-09 65.2 9.6 113 159-275 11-132 (510)
101 KOG0120|consensus 97.7 2.1E-05 4.6E-10 72.7 3.5 79 156-234 287-371 (500)
102 KOG1456|consensus 97.6 0.00044 9.6E-09 60.9 8.9 86 149-234 111-201 (494)
103 KOG1190|consensus 97.5 0.00029 6.3E-09 62.7 7.4 77 155-231 411-490 (492)
104 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.0011 2.3E-08 48.5 7.6 71 158-230 6-90 (100)
105 KOG1548|consensus 97.4 0.00067 1.5E-08 59.2 7.5 80 153-232 260-352 (382)
106 KOG0151|consensus 97.3 0.00024 5.3E-09 67.2 4.5 121 5-130 434-565 (877)
107 KOG3152|consensus 97.3 0.00013 2.8E-09 61.1 2.2 67 157-223 73-157 (278)
108 KOG4210|consensus 97.3 0.0002 4.2E-09 62.7 3.4 77 157-234 183-266 (285)
109 KOG0112|consensus 97.3 0.00033 7.1E-09 68.0 5.1 83 154-236 451-535 (975)
110 PF08952 DUF1866: Domain of un 97.3 0.0016 3.6E-08 50.5 7.7 74 159-235 28-110 (146)
111 KOG1855|consensus 97.2 0.00022 4.8E-09 63.8 3.1 62 156-217 229-309 (484)
112 KOG2416|consensus 97.2 0.00029 6.3E-09 65.5 3.5 80 152-231 438-521 (718)
113 KOG1456|consensus 97.2 0.0024 5.1E-08 56.5 8.7 79 153-231 282-362 (494)
114 cd00197 VHS_ENTH_ANTH VHS, ENT 97.2 0.00087 1.9E-08 50.5 5.4 105 7-117 1-114 (115)
115 KOG0147|consensus 97.1 0.00088 1.9E-08 61.8 5.9 59 173-231 468-527 (549)
116 KOG0120|consensus 97.1 0.0014 3.1E-08 60.9 7.1 60 173-232 424-492 (500)
117 KOG1995|consensus 97.0 0.00078 1.7E-08 59.2 3.8 78 156-233 64-155 (351)
118 KOG4676|consensus 96.9 0.0024 5.2E-08 56.7 6.6 71 159-230 8-87 (479)
119 KOG2193|consensus 96.8 0.00078 1.7E-08 60.3 2.3 79 159-237 2-81 (584)
120 KOG0129|consensus 96.8 0.0038 8.2E-08 57.4 6.7 64 151-215 252-327 (520)
121 KOG2314|consensus 96.6 0.0086 1.9E-07 55.7 8.0 74 156-229 56-141 (698)
122 PF15023 DUF4523: Protein of u 96.6 0.012 2.5E-07 45.4 7.3 75 155-231 83-161 (166)
123 KOG0129|consensus 96.5 0.0054 1.2E-07 56.4 6.0 57 157-213 369-432 (520)
124 KOG4211|consensus 96.5 0.0084 1.8E-07 54.9 7.0 74 156-230 101-180 (510)
125 KOG0105|consensus 96.5 0.011 2.3E-07 47.6 6.7 67 153-220 110-176 (241)
126 KOG0112|consensus 96.4 0.0011 2.3E-08 64.6 0.6 80 153-232 367-451 (975)
127 KOG4849|consensus 96.1 0.0052 1.1E-07 53.9 3.2 69 158-226 80-156 (498)
128 KOG2202|consensus 96.0 0.003 6.5E-08 53.2 1.3 58 174-231 84-147 (260)
129 KOG4307|consensus 95.9 0.028 6E-07 53.7 7.1 70 159-228 868-943 (944)
130 PF04847 Calcipressin: Calcipr 95.6 0.041 8.8E-07 45.0 6.4 61 172-232 9-71 (184)
131 KOG2135|consensus 95.2 0.013 2.8E-07 53.5 2.6 77 156-233 370-447 (526)
132 KOG1996|consensus 95.1 0.059 1.3E-06 46.4 5.9 59 172-230 300-365 (378)
133 KOG4368|consensus 94.8 0.072 1.6E-06 49.9 6.1 125 4-133 103-233 (757)
134 PF08675 RNA_bind: RNA binding 94.8 0.16 3.4E-06 35.6 6.3 54 159-215 10-63 (87)
135 KOG0128|consensus 94.6 0.019 4.2E-07 55.9 2.0 76 157-232 735-815 (881)
136 KOG4285|consensus 94.5 0.15 3.1E-06 44.2 6.8 74 157-232 196-270 (350)
137 KOG4574|consensus 94.3 0.057 1.2E-06 52.7 4.6 114 159-278 299-418 (1007)
138 KOG0115|consensus 93.8 0.1 2.2E-06 44.2 4.5 57 159-215 32-93 (275)
139 PF00790 VHS: VHS domain; Int 93.8 0.14 3E-06 39.9 5.1 113 5-119 4-119 (140)
140 PF03880 DbpA: DbpA RNA bindin 93.4 0.53 1.1E-05 32.3 6.9 67 160-229 2-74 (74)
141 PF10309 DUF2414: Protein of u 93.3 0.4 8.6E-06 31.7 5.8 54 159-214 6-62 (62)
142 cd03561 VHS VHS domain family; 93.1 0.31 6.7E-06 37.6 6.0 96 21-118 16-112 (133)
143 KOG1365|consensus 93.1 0.078 1.7E-06 47.3 2.9 73 158-230 280-360 (508)
144 KOG0128|consensus 93.0 0.013 2.8E-07 57.1 -2.3 64 157-220 666-735 (881)
145 PF03467 Smg4_UPF3: Smg-4/UPF3 92.6 0.39 8.6E-06 39.0 6.2 77 157-233 6-99 (176)
146 KOG2253|consensus 92.5 0.13 2.8E-06 49.0 3.6 72 155-229 37-108 (668)
147 KOG2068|consensus 92.4 0.058 1.2E-06 47.4 1.2 75 158-232 77-163 (327)
148 KOG4210|consensus 92.1 0.22 4.7E-06 43.7 4.4 123 156-278 86-218 (285)
149 KOG4307|consensus 89.9 0.25 5.5E-06 47.5 2.8 81 154-234 430-516 (944)
150 KOG1365|consensus 89.8 0.92 2E-05 40.7 6.0 64 160-224 163-235 (508)
151 PF07576 BRAP2: BRCA1-associat 88.3 4.8 0.00011 29.9 8.2 63 158-220 12-80 (110)
152 cd03569 VHS_Hrs_Vps27p VHS dom 88.2 2.5 5.4E-05 33.0 6.9 111 5-118 3-114 (142)
153 smart00288 VHS Domain present 88.0 1.8 3.9E-05 33.3 6.0 105 8-118 2-111 (133)
154 cd03568 VHS_STAM VHS domain fa 87.7 1.9 4E-05 33.8 6.0 109 8-119 2-111 (144)
155 KOG4660|consensus 87.4 1 2.2E-05 42.3 4.9 41 193-233 430-474 (549)
156 PF11767 SET_assoc: Histone ly 86.7 4.5 9.8E-05 27.1 6.5 55 169-226 11-65 (66)
157 KOG4410|consensus 83.5 1.6 3.5E-05 37.7 3.9 51 156-206 328-379 (396)
158 KOG2591|consensus 82.6 2.2 4.9E-05 40.2 4.8 67 157-224 174-244 (684)
159 cd03567 VHS_GGA VHS domain fam 81.8 5.7 0.00012 30.9 6.2 95 23-118 19-116 (139)
160 KOG2193|consensus 80.4 0.076 1.6E-06 48.0 -5.2 73 158-230 80-155 (584)
161 KOG4019|consensus 74.8 2.6 5.7E-05 34.0 2.4 74 159-232 11-90 (193)
162 KOG0804|consensus 72.6 9.8 0.00021 35.1 5.8 63 158-220 74-141 (493)
163 KOG2891|consensus 72.4 2.4 5.1E-05 36.5 1.8 74 159-232 150-268 (445)
164 PF15513 DUF4651: Domain of un 64.7 12 0.00027 24.6 3.5 19 173-191 9-27 (62)
165 KOG2318|consensus 64.6 41 0.00088 32.3 8.2 75 155-229 171-305 (650)
166 cd03565 VHS_Tom1 VHS domain fa 60.8 24 0.00052 27.4 5.3 97 21-118 17-115 (141)
167 KOG4676|consensus 57.4 1.4 3.1E-05 39.7 -2.4 70 158-228 151-222 (479)
168 KOG4483|consensus 53.4 20 0.00044 32.7 4.1 56 157-213 390-446 (528)
169 PF02714 DUF221: Domain of unk 49.8 22 0.00047 31.6 3.9 35 197-233 1-35 (325)
170 KOG4454|consensus 49.4 3.2 7E-05 34.6 -1.4 64 157-220 79-151 (267)
171 PF07292 NID: Nmi/IFP 35 domai 48.7 13 0.00029 26.4 1.8 27 154-180 48-74 (88)
172 cd03572 ENTH_epsin_related ENT 46.8 39 0.00085 25.6 4.2 61 13-73 9-69 (122)
173 KOG1087|consensus 43.8 23 0.0005 33.4 3.1 92 25-118 21-112 (470)
174 PF10567 Nab6_mRNP_bdg: RNA-re 41.1 35 0.00077 29.8 3.6 73 158-230 15-106 (309)
175 PF01417 ENTH: ENTH domain; I 39.7 19 0.00042 27.1 1.7 67 6-73 3-73 (125)
176 KOG0226|consensus 34.1 11 0.00025 32.2 -0.4 63 79-149 190-254 (290)
177 KOG4008|consensus 32.4 28 0.00061 29.4 1.6 38 154-191 36-73 (261)
178 KOG0125|consensus 30.8 27 0.00059 31.0 1.3 56 214-277 72-129 (376)
179 PF08544 GHMP_kinases_C: GHMP 29.4 1.8E+02 0.0039 19.5 5.5 42 173-215 37-80 (85)
180 KOG1818|consensus 28.9 3.3E+02 0.0071 26.9 8.2 90 24-118 27-119 (634)
181 COG0724 RNA-binding proteins ( 27.2 80 0.0017 26.1 3.7 91 101-192 165-259 (306)
182 PF00054 Laminin_G_1: Laminin 26.8 33 0.00071 26.0 1.0 34 158-191 92-126 (131)
183 COG4815 Uncharacterized protei 23.9 86 0.0019 23.9 2.7 40 218-257 34-73 (145)
184 KOG4365|consensus 22.5 13 0.00028 34.3 -2.2 73 158-231 3-81 (572)
185 PF03468 XS: XS domain; Inter 22.3 82 0.0018 23.6 2.4 41 171-211 30-74 (116)
186 PF15407 Spo7_2_N: Sporulation 20.9 53 0.0012 22.0 1.0 19 156-174 25-43 (67)
187 PF09707 Cas_Cas2CT1978: CRISP 20.7 1.9E+02 0.004 20.5 3.8 44 159-202 26-72 (86)
188 COG3710 CadC DNA-binding winge 20.0 1E+02 0.0022 24.1 2.6 40 159-200 64-104 (148)
No 1
>KOG0132|consensus
Probab=100.00 E-value=1e-56 Score=412.57 Aligned_cols=279 Identities=59% Similarity=0.975 Sum_probs=258.1
Q ss_pred CchhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhcc-C
Q psy3994 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQ-D 79 (282)
Q Consensus 1 m~~~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~-~ 79 (282)
||.+++|+.+|.+|.++|.|+|++||..||+.|+++++.|+|+|+.+|+||++|+|+|||++|||||||+|+++++++ +
T Consensus 1 me~v~~Fn~eL~SL~DsK~~IS~sKi~~ITkaAikaIk~ykhVVqsVeKfi~kCkpe~Kl~gLYVIDSIVRqsrhq~~~~ 80 (894)
T KOG0132|consen 1 MDAVKEFNGELDSLEDSKPGISGSKILKITKAAIKAIKLYKHVVQSVEKFIKKCKPEYKLPGLYVIDSIVRQSRHQFGKE 80 (894)
T ss_pred ChHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCeeEEehHHHHHHHHhhccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCchhhHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccCcccCCccccccccCCCCCCCCh------------------
Q psy3994 80 KDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMADPNHPIH------------------ 141 (282)
Q Consensus 80 ~~~~~~~f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~~~~~~~~~------------------ 141 (282)
+++|.++|.++++.+|..++.|..++..++++++|.|+++++|+.++|++++++++..++..
T Consensus 81 kd~F~prf~~n~~~tf~~L~~c~~edks~iIrvlNlwqkn~VfK~e~IqpLlDm~~~s~~~~~p~~~~~~~p~~~v~~~~ 160 (894)
T KOG0132|consen 81 KDVFGPRFSKNFTGTFQNLYECPQEDKSDIIRVLNLWQKNNVFKSEIIQPLLDMADGSGLSVFPKSPLQALPSPGVLQAP 160 (894)
T ss_pred ccccCCccchhHHHHHHHHHhcCHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHhccCccccCCCccCCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999887654310
Q ss_pred --hhh----------------------H----------------Hh----------------------------------
Q psy3994 142 --REL----------------------A----------------EI---------------------------------- 147 (282)
Q Consensus 142 --~~~----------------------~----------------~~---------------------------------- 147 (282)
.++ + .+
T Consensus 161 ~sda~asvadIs~~~~g~~sqq~~~s~~~~g~d~~~~~~~q~~~~il~~~~~~~~l~~~~~l~~~f~~~~d~e~~~eP~k 240 (894)
T KOG0132|consen 161 SSDALASVADISNDTAGQQSQQLNISGNPSGGDVGSQAALQRSTQILNEEPAEQGLSFNPKLLDRFDYPDDAESSEEPQK 240 (894)
T ss_pred chhhhhhhcccccCccccchhhccccCCccccchhhhhhhhHHHHHhcccchhhhhhcChhHHhcCCCCcchhhccCCcc
Confidence 000 0 00
Q ss_pred -------------h------------------------------------------------------------------
Q psy3994 148 -------------Q------------------------------------------------------------------ 148 (282)
Q Consensus 148 -------------~------------------------------------------------------------------ 148 (282)
|
T Consensus 241 e~a~~~~v~e~Lqq~f~~~~~g~q~q~~~pl~~~~~~~~n~~qs~p~~~~~~q~~lp~~~~~qq~~~~~vq~q~~~~~~~ 320 (894)
T KOG0132|consen 241 EQAILPQVAEVLQQHFQATMIGAQQQSALPLGNPMPQFMNVPQSIPSGPPGQQTGLPNDTQVQQITLMNVQAQQNVITEQ 320 (894)
T ss_pred ccchhhhHHHHhhhhccccccchhhccCCCCCCCCCccccccccCCCCCccccccCCCcccccccceeecccccCCcccc
Confidence 0
Q ss_pred ----------h---------------------------------------------------------------------
Q psy3994 149 ----------A--------------------------------------------------------------------- 149 (282)
Q Consensus 149 ----------~--------------------------------------------------------------------- 149 (282)
+
T Consensus 321 ~d~~e~e~~~~~n~~~r~~~v~~r~r~~~~s~s~~~~~r~~RsrS~sr~~~~~rrs~Srs~~r~~~s~r~~~~er~~re~ 400 (894)
T KOG0132|consen 321 QDRIEKEAFRNYNQEARPHGVRSRSRSAPASASRSRRGRLSRSRSRSRRSRSRRRSGSRSRDRIRHSLRDRLGERRDREH 400 (894)
T ss_pred ccHHHHHHhcccchhhhhhccCCCcCCCCcccccccccccccccCCCcccccccCCCCCcccccCccCchhhcCcccCcc
Confidence 0
Q ss_pred ------------cCCCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCC
Q psy3994 150 ------------RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217 (282)
Q Consensus 150 ------------~~~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~ 217 (282)
+++...+.++|||||+|+.+++|.+|..+|+.||+|.+|.++.++|||||++..+.+|++|+.+|++.
T Consensus 401 ereRr~kglP~I~pd~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~ 480 (894)
T KOG0132|consen 401 ERERRKKGLPTIPPDHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNV 480 (894)
T ss_pred ccccccccCCCCCCcceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcc
Confidence 24566678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeeEEEEeecCCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhcCcccccCCCCCCCC
Q psy3994 218 KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLEDGGVFDEDTVPLWLK 282 (282)
Q Consensus 218 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 282 (282)
.+.++.|+|.||.++|.+. +|++|||.+.|+++|||++| + .|++.|++|+|+|.+++|+.+|
T Consensus 481 kv~~k~Iki~Wa~g~G~ks-e~k~~wD~~lGVt~IP~~kL-t-~dl~~~~egam~d~~t~~p~~k 542 (894)
T KOG0132|consen 481 KVADKTIKIAWAVGKGPKS-EYKDYWDVELGVTYIPWEKL-T-DDLEAWCEGAMLDGTTGPPEWK 542 (894)
T ss_pred cccceeeEEeeeccCCcch-hhhhhhhcccCeeEeehHhc-C-HHHHHhhhhceecCccCCcccc
Confidence 9999999999999999998 89999999999999999999 4 4599999999999999988654
No 2
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=99.86 E-value=2.8e-21 Score=146.50 Aligned_cols=111 Identities=33% Similarity=0.547 Sum_probs=100.9
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCch
Q psy3994 5 KTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFG 84 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~ 84 (282)
.+|+..|++|..++ +|+++|++||.||++|.++++++|+.|++++++|+|.+||+.|||+|+|+|+.+++ |.
T Consensus 2 ~~~~~~l~~L~~~~--~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~------~~ 73 (114)
T cd03562 2 FDYNALLEKLTFNK--NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRK------YK 73 (114)
T ss_pred ccHHHHHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccc------hH
Confidence 57899999998876 79999999999999999999999999999999999999999999999999999444 44
Q ss_pred hhHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccCcccC
Q psy3994 85 PRFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFT 123 (282)
Q Consensus 85 ~~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~ 123 (282)
..|+..+.+.|.+++. +++..+.++.+++++|.++++|+
T Consensus 74 ~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~~~~~f~ 113 (114)
T cd03562 74 EFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWEERFVFG 113 (114)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCCCCC
Confidence 5577777888998887 99999999999999999999875
No 3
>KOG0148|consensus
Probab=99.82 E-value=3.1e-20 Score=153.70 Aligned_cols=147 Identities=16% Similarity=0.359 Sum_probs=113.4
Q ss_pred CCCCchhhHHHHHH-HHHHHhhc-CChhhHHHHHHHHHhhccCcccCCccccccccCCCCCCCChhhhHHhhh-------
Q psy3994 79 DKDVFGPRFARNLK-ATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQA------- 149 (282)
Q Consensus 79 ~~~~~~~~f~~~l~-~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~------- 149 (282)
.+.+|+++|.+.|+ +.+...|. ..+...+|++|+.++..+.| +.|+.|.+.. .+.+|..+|..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKG-------YgFVSf~~k~-dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKG-------YGFVSFPNKE-DAENAIQQMNGQWLGRRT 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccc-------eeEEeccchH-HHHHHHHHhCCeeeccce
Confidence 45678888888766 34555554 55555566666666555444 5556555544 33334433311
Q ss_pred ----------------------cCCCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHH
Q psy3994 150 ----------------------RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207 (282)
Q Consensus 150 ----------------------~~~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A 207 (282)
--+..++.+|+|||||++..+||+++++.|++||.|.+|++.+.+|||||.|.++|+|
T Consensus 134 IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAA 213 (321)
T ss_pred eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhH
Confidence 1245567789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 208 AKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 208 ~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
..||..+||+++.|+.++|.|.+...
T Consensus 214 ahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 214 AHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred HHHHHHhcCceeCceEEEEeccccCC
Confidence 99999999999999999999998654
No 4
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=99.80 E-value=1.8e-19 Score=138.00 Aligned_cols=119 Identities=33% Similarity=0.604 Sum_probs=106.3
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchh
Q psy3994 6 TFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGP 85 (282)
Q Consensus 6 ~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~ 85 (282)
+|++.|++|. .|+.+|+++|.||++|.++++++|+.|+++++++++.+||+.|||+|+|+++++.+.+. .|..
T Consensus 1 ~f~~~L~~L~-----~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~--~f~~ 73 (121)
T smart00582 1 AFEQKLESLN-----NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGS--EFGD 73 (121)
T ss_pred ChHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHH--HHHH
Confidence 4889999996 67789999999999999999999999999999999999999999999999999877543 3667
Q ss_pred hHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccCcccCCccccccc
Q psy3994 86 RFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLF 131 (282)
Q Consensus 86 ~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~ 131 (282)
.|.+.+...|..++. ++++.+.++.+++++|.++++|+++.+..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~~iF~~~~i~~L~ 120 (121)
T smart00582 74 ELGPVFQDALRDVLGAANDETKKKIRRLLNIWEERGIFPPSVLRPLR 120 (121)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHhh
Confidence 788888888888886 6788999999999999999999999877654
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=5.9e-17 Score=127.36 Aligned_cols=81 Identities=32% Similarity=0.502 Sum_probs=74.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
...+++|||+|||++++|++|+++|++||.|.++.++. ++|||||+|.+.++|+.|+..||+..+.|++|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999874 689999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
+..+...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876543
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=2.9e-16 Score=140.30 Aligned_cols=115 Identities=21% Similarity=0.278 Sum_probs=90.6
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
.....++|||+|||+++|+++|+++|+.||.|.+|+++. ++|||||+|.+.++|++|+..|||..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 344679999999999999999999999999999999974 67999999999999999999999999999999999
Q ss_pred eecCCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCC
Q psy3994 228 WAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDT 276 (282)
Q Consensus 228 ~a~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~ 276 (282)
|+++......+. ..=+..+|.+ .++++|+.+++ .|.+..+.
T Consensus 183 ~a~p~~~~~~~~------~lfV~nLp~~--vtee~L~~~F~~fG~V~~v~ 224 (346)
T TIGR01659 183 YARPGGESIKDT------NLYVTNLPRT--ITDDQLDTIFGKYGQIVQKN 224 (346)
T ss_pred cccccccccccc------eeEEeCCCCc--ccHHHHHHHHHhcCCEEEEE
Confidence 998654322111 1123444444 45788887554 56555443
No 7
>KOG0148|consensus
Probab=99.66 E-value=2.6e-16 Score=130.61 Aligned_cols=175 Identities=19% Similarity=0.313 Sum_probs=120.0
Q ss_pred cCCCCchhhHHHHHHHHH-HHhhc-CChhhHHHHHHHHH--hhccCcccCCccccccccCCCCCCCChhhhHHhhhcCCC
Q psy3994 78 QDKDVFGPRFARNLKATF-QHLYQ-CPPEDKSKIIRVLN--LWQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGV 153 (282)
Q Consensus 78 ~~~~~~~~~f~~~l~~~f-~~v~~-~~~~~~~k~~~~l~--~w~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (282)
..+++||+.+...+++.| ..+|+ ..+....|++..-- .|... + .+...|
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~----p---------~nQsk~-------------- 57 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATA----P---------GNQSKP-------------- 57 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccC----c---------ccCCCC--------------
Confidence 457899999999999865 56666 78888888776511 22110 0 111101
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
....---+|||.|.+.++-+.|++.|.+||+|.++++++ +||||||.|-++++|++||..|||..|++|.||..
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 111235799999999999999999999999999999996 89999999999999999999999999999999999
Q ss_pred eecCCCCC----CCccccccccCC----CeeeecCCCCCcchhhhhhhc-Cccccc-CCCCC
Q psy3994 228 WAPGKGMK----DKDWKDFWEVQD----GVSYIPYDRLSKEIDYDYLED-GGVFDE-DTVPL 279 (282)
Q Consensus 228 ~a~~~~~~----~~~~~~~~~~~~----g~~~~p~~~~~~~~~~~~~~~-~~~~~~-~~~p~ 279 (282)
||..+... +..+.+.++... .+-.=.+....++++++..+. .|.|-+ -+||+
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~ 199 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD 199 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc
Confidence 99876422 111222222111 111113444337777776444 454444 36665
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=3.4e-17 Score=146.28 Aligned_cols=77 Identities=34% Similarity=0.677 Sum_probs=70.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQG--KTITLAW 228 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~ 228 (282)
..++|||+|||..+|+++|+++|++||+|..+++++ ++|||||+|.++++|++|++.||+..+.+ ++|+|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999885 46999999999999999999999998865 7899999
Q ss_pred ecCCC
Q psy3994 229 APGKG 233 (282)
Q Consensus 229 a~~~~ 233 (282)
|...+
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 98654
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.63 E-value=1.5e-15 Score=137.14 Aligned_cols=107 Identities=24% Similarity=0.312 Sum_probs=85.5
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.++|||+|||..+++++|+++|+.||+|.+|+++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|+++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 58999999999999999999999999999999974 679999999999999999999999999999999999987
Q ss_pred CCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-Cccc
Q psy3994 232 KGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVF 272 (282)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~ 272 (282)
........ .+.+..+....+.++++.+++ .|.+
T Consensus 83 ~~~~~~~~--------~l~v~~l~~~~~~~~l~~~f~~~G~i 116 (352)
T TIGR01661 83 SSDSIKGA--------NLYVSGLPKTMTQHELESIFSPFGQI 116 (352)
T ss_pred cccccccc--------eEEECCccccCCHHHHHHHHhccCCE
Confidence 65322211 122333333345778887554 3443
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.62 E-value=2.5e-15 Score=135.67 Aligned_cols=76 Identities=25% Similarity=0.444 Sum_probs=72.1
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
+.+|||+|||+.+++++|+++|++||.|.+++++. +||||||+|.+.++|.+|+..|||..++|+.|+|.|+.+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 45799999999999999999999999999999984 689999999999999999999999999999999999998
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 75
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=3.5e-15 Score=102.45 Aligned_cols=65 Identities=40% Similarity=0.698 Sum_probs=62.1
Q ss_pred EEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 161 l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
|||+|||+++|+++|+++|++||.+..+.+.. .++||||+|.++++|+.|++.|||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999886 589999999999999999999999999999986
No 12
>KOG2669|consensus
Probab=99.58 E-value=5.9e-15 Score=127.52 Aligned_cols=128 Identities=21% Similarity=0.365 Sum_probs=111.4
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCch
Q psy3994 5 KTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFG 84 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~ 84 (282)
+.|++.|++|.. |+..|++++.|++.|.+++..||++|.+.+++.+..+||..|||+|.|+++++++..+ |+
T Consensus 7 e~l~~kL~~L~~-----TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~~~~Kl~llYLaNDVvQnskrk~~e---f~ 78 (325)
T KOG2669|consen 7 EALEKKLAELSN-----TQESIQTLSLWLIHHKKHARLIVDVWLKELKKSSVNHKLTLLYLANDVVQNSKRKGPE---FV 78 (325)
T ss_pred HHHHHHHHhccc-----hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccCCCceeeehhhhHHHHHHhhhcCch---hH
Confidence 568889999864 5559999999999999999999999999999999999999999999999999666555 88
Q ss_pred hhHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccCcccCCccccccccCCCCCCCC
Q psy3994 85 PRFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMADPNHPI 140 (282)
Q Consensus 85 ~~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~~~~~~~~ 140 (282)
..|.+.+.+.|.+++. ++.....++.|++++|..+++|.++.+..+....+...|+
T Consensus 79 ~ef~~v~~~a~~~i~~~~~~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~l~~e~p~ 135 (325)
T KOG2669|consen 79 DEFWPVVLKAFAHIVEETDVKCKKKLGRLINIWEERNVFSPESLVDLEESLGAEKPP 135 (325)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHhccCCHHHHHHHHHHhcccCCc
Confidence 9999999999999998 6666678899999999999999999887776655533333
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=1.1e-15 Score=143.97 Aligned_cols=77 Identities=16% Similarity=0.317 Sum_probs=72.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||+++++++|+++|+.||.|.++++.+ +||||||+|.+.++|.+|+..|||..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 357999999999999999999999999999999984 68999999999999999999999999999999999998
Q ss_pred CCC
Q psy3994 231 GKG 233 (282)
Q Consensus 231 ~~~ 233 (282)
.+.
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 653
No 14
>KOG0121|consensus
Probab=99.56 E-value=6.7e-15 Score=109.13 Aligned_cols=76 Identities=33% Similarity=0.540 Sum_probs=70.7
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
.++|||||||+..++|++|.++|+.+|+|..|.+-. +.||+||+|.++++|+.|++.++|+.++.++|++.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 579999999999999999999999999999997653 67999999999999999999999999999999999987
Q ss_pred CC
Q psy3994 231 GK 232 (282)
Q Consensus 231 ~~ 232 (282)
+.
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 53
No 15
>KOG0107|consensus
Probab=99.56 E-value=1.3e-14 Score=113.32 Aligned_cols=77 Identities=27% Similarity=0.494 Sum_probs=72.2
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
.+.||||||+..+++.||+..|..||.+.++.+-. +.|||||+|++..+|+.|+..|+|..+.|..|+|++......
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 58999999999999999999999999999998864 779999999999999999999999999999999999987644
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=3e-14 Score=120.09 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=70.6
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
.++|||||||+.+|+++|+++|+.||.|.++.++. .+|||||+|.+.++|+.|+. |||..+.|+.|+|.++.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQL 82 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCCC
Confidence 58999999999999999999999999999999986 47999999999999999995 999999999999999986543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.54 E-value=4.3e-14 Score=132.60 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=87.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh--CCCeeCCeeEEEEeecCCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL--KNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l--~g~~~~g~~l~v~~a~~~~~ 234 (282)
++++|||+|||+.+++++|+++|++||.|.++.++++|+||||+|.+.++|++|+..+ ++..+.|++|+|.|+..+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 4689999999999999999999999999999999999999999999999999999875 77899999999999976542
Q ss_pred CCCccccc-cccCC---CeeeecCCCCCcchhhhhhhc-Cccccc
Q psy3994 235 KDKDWKDF-WEVQD---GVSYIPYDRLSKEIDYDYLED-GGVFDE 274 (282)
Q Consensus 235 ~~~~~~~~-~~~~~---g~~~~p~~~~~~~~~~~~~~~-~~~~~~ 274 (282)
......+. -.... .+.+.++....++++|..+++ .|.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~ 125 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR 125 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE
Confidence 21110000 00011 123334443337788887555 444433
No 18
>KOG0111|consensus
Probab=99.53 E-value=9.1e-15 Score=118.04 Aligned_cols=87 Identities=31% Similarity=0.521 Sum_probs=80.2
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.++||||+|...++|.-|...|-+||.|..+.++. +||||||+|...++|.+||..||+.++.||.|+|.+|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 58999999999999999999999999999999984 899999999999999999999999999999999999999
Q ss_pred CCCCCCccccccc
Q psy3994 232 KGMKDKDWKDFWE 244 (282)
Q Consensus 232 ~~~~~~~~~~~~~ 244 (282)
...+.+..+..|.
T Consensus 90 ~kikegsqkPvWA 102 (298)
T KOG0111|consen 90 EKIKEGSQKPVWA 102 (298)
T ss_pred ccccCCCCCCccc
Confidence 8877766555544
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=4.5e-14 Score=133.12 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||||||..+++++|+++|.+||.|.+++++. ++|||||+|.+.++|++|+..|||..+.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 458999999999999999999999999999999874 78999999999999999999999999999999999765
Q ss_pred CCCCCCC--c-cccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCCCC
Q psy3994 231 GKGMKDK--D-WKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDTVP 278 (282)
Q Consensus 231 ~~~~~~~--~-~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~p 278 (282)
....... + ....-.....+-+-.++.-.++++|+.+++ +|.+..+.++
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~ 237 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA 237 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEE
Confidence 4321110 0 000000011122224444446788887554 5666665553
No 20
>KOG0125|consensus
Probab=99.52 E-value=2.5e-14 Score=121.78 Aligned_cols=76 Identities=24% Similarity=0.465 Sum_probs=72.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
..++|+|+|||+...|.||+.+|++||.|.+|.|+. +||||||+|++.++|++|-.+|||+.+.||+|.|..|..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 347899999999999999999999999999999984 8999999999999999999999999999999999999866
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=9.5e-14 Score=130.68 Aligned_cols=75 Identities=29% Similarity=0.464 Sum_probs=70.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccC--CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEY--GDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~--G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
..++|||+||+..+++++|+++|++| |.|++|++++ +||||+|.++++|++|++.|||..+.|+.|+|.||+++.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 35789999999999999999999999 9999998764 899999999999999999999999999999999998753
No 22
>KOG0122|consensus
Probab=99.49 E-value=1.1e-13 Score=113.60 Aligned_cols=76 Identities=25% Similarity=0.489 Sum_probs=72.3
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
...+|-|.||+.+++|++|+++|.+||.|.++.+.+ +||||||.|.++++|.+||..|||.-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 567899999999999999999999999999998885 79999999999999999999999999999999999999
Q ss_pred CC
Q psy3994 231 GK 232 (282)
Q Consensus 231 ~~ 232 (282)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.5e-13 Score=122.73 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=71.6
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC--CCcEEEEEecCH--HHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP--PRGCAFVCMNRR--QDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~--~kg~aFV~f~~~--~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
....+||||||++.+++++|+..|..||.|.++.|++ .||||||+|.+. .++.+||..|||..++|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3457999999999999999999999999999999996 789999999987 789999999999999999999999986
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 3
No 24
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.47 E-value=5.7e-13 Score=125.05 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=71.8
Q ss_pred CCCcEEEecCCCc-cCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 156 MCSTTLWIGHLSK-LVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 156 ~~~~~l~V~nl~~-~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.++++|||+|||+ .+|+++|+++|+.||.|.+|+++. .+|||||+|.+.++|..|+..|||..+.|++|+|.+++.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 4678999999997 699999999999999999999986 5799999999999999999999999999999999998654
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.47 E-value=1.8e-14 Score=137.85 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=85.8
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.++|||+|||.++++++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|++.+||..+.|+.|.|.....+
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 46899999999999999999999999999999874 6899999999999999999999999999999999877655
Q ss_pred CCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-Cccccc
Q psy3994 233 GMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDE 274 (282)
Q Consensus 233 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~ 274 (282)
..+..... .....+-+-.+..-.++++|+.+++ .|.+..
T Consensus 168 ~~~~~~~~---~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 168 HEREAAPL---KKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred cccccccc---cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 43311000 0112232333444446788887554 454433
No 26
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=2.6e-13 Score=93.38 Aligned_cols=65 Identities=32% Similarity=0.591 Sum_probs=59.6
Q ss_pred EEecCCCccCcHHHHHhhhccCCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP-----RGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 161 l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~-----kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
|||+|||+++++++|+++|+.||.|..+.+..+ +++|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999864 69999999999999999999999999999875
No 27
>KOG0145|consensus
Probab=99.47 E-value=7.6e-14 Score=115.41 Aligned_cols=112 Identities=26% Similarity=0.505 Sum_probs=91.4
Q ss_pred CChhhHHHHHHHHH-hhccCcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHHHHHhhh
Q psy3994 101 CPPEDKSKIIRVLN-LWQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTF 179 (282)
Q Consensus 101 ~~~~~~~k~~~~l~-~w~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~~l~~~f 179 (282)
..++|+++++..|| ....+++++++. +.|+ .......+|||.+||..+|..+|+.+|
T Consensus 91 v~p~DAe~AintlNGLrLQ~KTIKVSy-------ARPS---------------s~~Ik~aNLYvSGlPktMtqkelE~iF 148 (360)
T KOG0145|consen 91 VRPKDAEKAINTLNGLRLQNKTIKVSY-------ARPS---------------SDSIKDANLYVSGLPKTMTQKELEQIF 148 (360)
T ss_pred cChHHHHHHHhhhcceeeccceEEEEe-------ccCC---------------hhhhcccceEEecCCccchHHHHHHHH
Confidence 56888888888888 445677766665 3333 223356789999999999999999999
Q ss_pred ccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecCCCC
Q psy3994 180 GEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQG--KTITLAWAPGKGM 234 (282)
Q Consensus 180 ~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~a~~~~~ 234 (282)
++||.|..-++.. +||.|||.|+.+.+|+.||..|||+...| .+|.|+||.....
T Consensus 149 s~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 149 SPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred HHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 9999987766653 89999999999999999999999998866 4899999986643
No 28
>KOG0117|consensus
Probab=99.46 E-value=2.5e-13 Score=119.97 Aligned_cols=110 Identities=25% Similarity=0.429 Sum_probs=87.7
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCee-CCeeEEEEe
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKL-QGKTITLAW 228 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~-~g~~l~v~~ 228 (282)
.-++.||||.||.++.|++|..+|++.|+|-.++++. +||||||+|.+.++|+.||+.||+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4579999999999999999999999999999999996 799999999999999999999999998 799999887
Q ss_pred ecCCCCCCCccccccccCCCeeeecCCCCCcchhhhhhh--cCcccccCCCC
Q psy3994 229 APGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE--DGGVFDEDTVP 278 (282)
Q Consensus 229 a~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~p 278 (282)
+... |+.+ +..||-... .++-|+.+. .-|++|++..|
T Consensus 161 Svan------~RLF------iG~IPK~k~-keeIlee~~kVteGVvdVivy~ 199 (506)
T KOG0117|consen 161 SVAN------CRLF------IGNIPKTKK-KEEILEEMKKVTEGVVDVIVYP 199 (506)
T ss_pred eeec------ceeE------eccCCcccc-HHHHHHHHHhhCCCeeEEEEec
Confidence 7643 2233 455666665 323333322 25777777664
No 29
>KOG2071|consensus
Probab=99.45 E-value=1.6e-13 Score=126.13 Aligned_cols=105 Identities=28% Similarity=0.519 Sum_probs=97.0
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCC
Q psy3994 3 VIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDV 82 (282)
Q Consensus 3 ~~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~ 82 (282)
.+.+|++.|.+|.. +|++.|++||.+|.+|..++..||.+||++|.+|+|.+||+++|++|+|++|. ...
T Consensus 5 ~~~dy~s~ledltf----nskp~i~~lt~la~En~~~a~~iv~~iE~hi~kcpp~~kL~~~y~~dsi~knv------g~p 74 (579)
T KOG2071|consen 5 ACRDYQSSLEDLTF----NSKPIINTLTILAEENLPFAKSIVSAIEAHIAKCPPSQKLPVMYLLDSIVKNV------GSP 74 (579)
T ss_pred hHHHHHHHHHHHhc----CCcchhHHhhHhhhhcccccHHHHHHHHHHHhhCCcccccchhhhhHHHHhhc------CCc
Confidence 58899999999977 55567999999999999999999999999999999999999999999999999 445
Q ss_pred chhhHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhc
Q psy3994 83 FGPRFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQ 117 (282)
Q Consensus 83 ~~~~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~ 117 (282)
|.-.|+.++-.+|.+.|. .++..+.+..+++.+|.
T Consensus 75 y~~~fs~~l~a~f~~~~~~vd~r~r~~l~~~~~tw~ 110 (579)
T KOG2071|consen 75 YTTAFSRNLVATFICAFTKVDERTRTSLFKLRATWD 110 (579)
T ss_pred chhhhhhhHHHHHHHHHhhccccccchhHhhHHhhc
Confidence 666699999999999997 89999999999999998
No 30
>KOG0144|consensus
Probab=99.45 E-value=1.3e-13 Score=121.27 Aligned_cols=83 Identities=28% Similarity=0.542 Sum_probs=74.5
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCe-eCC--eeEEEE
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTK-LQG--KTITLA 227 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~v~ 227 (282)
+..++||||-|+..+||.+++++|++||.|++|.|.+ +||||||+|.+++-|..||+.|||.. +.| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 3468999999999999999999999999999999997 89999999999999999999999985 444 689999
Q ss_pred eecCCCCCCCc
Q psy3994 228 WAPGKGMKDKD 238 (282)
Q Consensus 228 ~a~~~~~~~~~ 238 (282)
||..++.+..+
T Consensus 202 FADtqkdk~~~ 212 (510)
T KOG0144|consen 202 FADTQKDKDGK 212 (510)
T ss_pred ecccCCCchHH
Confidence 99988766443
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.44 E-value=9.7e-13 Score=123.93 Aligned_cols=74 Identities=23% Similarity=0.442 Sum_probs=68.0
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCee-CCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKL-QGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~-~g~~l~v~~a~ 230 (282)
..++|||+|||++++|++|+++|++||.|.++++++ +||||||+|.+.++|++||+.||+..+ .|+.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 469999999999999999999999999999999874 799999999999999999999999988 47888887664
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.44 E-value=6.1e-13 Score=127.38 Aligned_cols=111 Identities=22% Similarity=0.296 Sum_probs=83.8
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.+|||||||.++||++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|+..+|+..+.|++|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 3699999999999999999999999999999974 5789999999999999999999999999999999998644
Q ss_pred CCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccC
Q psy3994 233 GMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDED 275 (282)
Q Consensus 233 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~ 275 (282)
.... . .....+-+-++..-.+.++|..+++ .|.+..+
T Consensus 81 ~~~~---~---~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~ 118 (562)
T TIGR01628 81 PSLR---R---SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSC 118 (562)
T ss_pred cccc---c---cCCCceEEcCCCccCCHHHHHHHHHhcCCccee
Confidence 2111 0 0111222224444435677776554 4444333
No 33
>KOG0117|consensus
Probab=99.43 E-value=2.9e-13 Score=119.64 Aligned_cols=78 Identities=28% Similarity=0.411 Sum_probs=72.3
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMKD 236 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 236 (282)
....|||.||+.++||+.|+++|++||.|++|+.++ .||||.|.++++|-+|++.+||..+.|..|.|.+|++...+.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 457899999999999999999999999999998774 799999999999999999999999999999999999875443
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.42 E-value=1.2e-12 Score=89.37 Aligned_cols=68 Identities=35% Similarity=0.615 Sum_probs=63.7
Q ss_pred EEEecCCCccCcHHHHHhhhccCCceEEEEEeCCC----cEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR----GCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 160 ~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~k----g~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
+|||+|||..+++++|+++|.+||.+..+.+...+ |+|||+|.+.++|++|+..++|..+.|++++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988754 999999999999999999999999999998874
No 35
>KOG0105|consensus
Probab=99.42 E-value=5.2e-13 Score=105.24 Aligned_cols=76 Identities=28% Similarity=0.497 Sum_probs=70.8
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.+++|||||||.++.+.+++++|.+||.|..|.+.. ..+||||+|++..+|+.||..-+|..++|..|+|+++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 468999999999999999999999999999998874 4579999999999999999999999999999999999865
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.42 E-value=6.2e-13 Score=124.23 Aligned_cols=75 Identities=25% Similarity=0.503 Sum_probs=70.5
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||..+++++|+++|++||.|..+.+.. ++|||||+|.+.++|.+|+..|||..+.|++|+|.||.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 368999999999999999999999999999999883 57999999999999999999999999999999999976
Q ss_pred C
Q psy3994 231 G 231 (282)
Q Consensus 231 ~ 231 (282)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 37
>KOG0145|consensus
Probab=99.42 E-value=6.9e-13 Score=109.78 Aligned_cols=90 Identities=30% Similarity=0.416 Sum_probs=80.1
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITL 226 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 226 (282)
......++|.|..||.++|+++++.+|...|+|++|++++ +-|||||.|-+.++|++|+..|||-.+..++|+|
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3455678999999999999999999999999999999997 5699999999999999999999999999999999
Q ss_pred EeecCCCCCCCccccc
Q psy3994 227 AWAPGKGMKDKDWKDF 242 (282)
Q Consensus 227 ~~a~~~~~~~~~~~~~ 242 (282)
++|++....-++-+.|
T Consensus 116 SyARPSs~~Ik~aNLY 131 (360)
T KOG0145|consen 116 SYARPSSDSIKDANLY 131 (360)
T ss_pred EeccCChhhhcccceE
Confidence 9999887655443333
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.5e-12 Score=85.57 Aligned_cols=55 Identities=29% Similarity=0.592 Sum_probs=51.7
Q ss_pred HHhhhccCCceEEEEEeCCC-cEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 175 LSDTFGEYGDVVSINLIPPR-GCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 175 l~~~f~~~G~i~~~~~~~~k-g~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
|.++|++||+|.++.+...+ ++|||+|.+.++|+.|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999877 99999999999999999999999999999999996
No 39
>KOG0113|consensus
Probab=99.41 E-value=2.2e-12 Score=108.81 Aligned_cols=78 Identities=24% Similarity=0.433 Sum_probs=73.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
+-+||||+.|+.+++|..|+..|+.||.|..|.+++ ++|||||+|.+..+...|-+..+|..|+|+.|-|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 459999999999999999999999999999999995 79999999999999999999999999999999999988
Q ss_pred CCCC
Q psy3994 231 GKGM 234 (282)
Q Consensus 231 ~~~~ 234 (282)
.+.+
T Consensus 180 gRTv 183 (335)
T KOG0113|consen 180 GRTV 183 (335)
T ss_pred cccc
Confidence 6643
No 40
>KOG0144|consensus
Probab=99.40 E-value=6.5e-13 Score=116.96 Aligned_cols=120 Identities=24% Similarity=0.440 Sum_probs=93.4
Q ss_pred hcCCCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCee---
Q psy3994 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKL--- 219 (282)
Q Consensus 149 ~~~~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~--- 219 (282)
+.++..+...-++|||-+|+.++|.+|+++|++||.|.+|.+++ ++|||||.|.++++|.+|+.+||+...
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 34455666678999999999999999999999999999999996 789999999999999999999998764
Q ss_pred CCeeEEEEeecCCCCCC-CccccccccCCCeeeecCCCCCcchhhhh-hhcCcccccCC
Q psy3994 220 QGKTITLAWAPGKGMKD-KDWKDFWEVQDGVSYIPYDRLSKEIDYDY-LEDGGVFDEDT 276 (282)
Q Consensus 220 ~g~~l~v~~a~~~~~~~-~~~~~~~~~~~g~~~~p~~~~~~~~~~~~-~~~~~~~~~~~ 276 (282)
.-.++.|++|.....+. .+++.+ +..++-. .++.+++. |...|.|+++-
T Consensus 105 ~~~pvqvk~Ad~E~er~~~e~KLF------vg~lsK~--~te~evr~iFs~fG~Ied~~ 155 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERIVEERKLF------VGMLSKQ--CTENEVREIFSRFGHIEDCY 155 (510)
T ss_pred CCcceeecccchhhhccccchhhh------hhhcccc--ccHHHHHHHHHhhCccchhh
Confidence 34689999999876552 223333 2223332 35677776 44578888874
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.8e-12 Score=107.67 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=68.8
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.+.+|||+||++.+|+++|+++|+.||+|.+|.+++ .++||||+|.+.++|+.|+ .|+|..+.+++|.|..+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence 358999999999999999999999999999999997 4589999999999999999 59999999999999877644
No 42
>KOG0149|consensus
Probab=99.39 E-value=5.3e-13 Score=109.17 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=65.9
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
.-++||||||++.+..+.|+++|++||+|++..++. +||||||+|.+.++|.+|++- .+-.|+||+-.|.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 358999999999999999999999999999998884 899999999999999999974 3457899998888875
Q ss_pred C
Q psy3994 231 G 231 (282)
Q Consensus 231 ~ 231 (282)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 43
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.38 E-value=4.4e-12 Score=120.06 Aligned_cols=77 Identities=19% Similarity=0.338 Sum_probs=71.4
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||||||..+++++|+++|+.||.|..+.++. ++|||||+|.+.++|..|+..|||..+.|+.|.|.+|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998874 6899999999999999999999999999999999999
Q ss_pred cCC
Q psy3994 230 PGK 232 (282)
Q Consensus 230 ~~~ 232 (282)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 44
>KOG4207|consensus
Probab=99.37 E-value=6.2e-13 Score=106.60 Aligned_cols=73 Identities=27% Similarity=0.461 Sum_probs=69.9
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
-++|-|-||...++.++|+.+|++||.|-.|.|++ ++|||||.|.+..+|+.|+++|+|..++|+.|+|++|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 36899999999999999999999999999999986 78999999999999999999999999999999999987
No 45
>KOG0114|consensus
Probab=99.37 E-value=4.6e-12 Score=90.72 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=71.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.++-|||.|||..+|.++..++|++||.|..+++-. -+|-|||.|++..+|.+|+..|+|..+.++.|.|-+-.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 468899999999999999999999999999999975 6899999999999999999999999999999999887754
No 46
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.36 E-value=4.7e-12 Score=118.33 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=87.7
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||..+++++|+++|++||.|..|+++. ++|||||+|.+.++|++|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 34578999999999999999999999999999999974 58999999999999999996 899999999999998
Q ss_pred ecCCCCCCCcccccc----ccCCCeeeecCCCCCcchhhhhhhc-CcccccCC
Q psy3994 229 APGKGMKDKDWKDFW----EVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDT 276 (282)
Q Consensus 229 a~~~~~~~~~~~~~~----~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~ 276 (282)
+.............. .....+-+-++..-.++++|+.+++ .|.+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~ 217 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQ 217 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 765432211100000 0011122223433346888887655 56554443
No 47
>KOG0153|consensus
Probab=99.34 E-value=3.5e-12 Score=109.68 Aligned_cols=80 Identities=34% Similarity=0.626 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeec
Q psy3994 152 GVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL-KNTKLQGKTITLAWAP 230 (282)
Q Consensus 152 ~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~a~ 230 (282)
+..+...++||||+|.+.++|.+|+++|.+||+|.++.+...++||||+|.++++|+.|.... |...++|.+|+|.|+.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 344556789999999999999999999999999999999999999999999999999988765 5556799999999999
Q ss_pred C
Q psy3994 231 G 231 (282)
Q Consensus 231 ~ 231 (282)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 48
>KOG0109|consensus
Probab=99.34 E-value=2.4e-12 Score=108.20 Aligned_cols=73 Identities=27% Similarity=0.519 Sum_probs=69.9
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
..|||||||..+++.+|+.+|++||+|.+|.|++ .||||..++...|+.||+.|||..++|..|.|+-++++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--ccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 4699999999999999999999999999999987 999999999999999999999999999999999999883
No 49
>KOG0130|consensus
Probab=99.33 E-value=3.1e-12 Score=95.86 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=75.8
Q ss_pred CCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 152 GVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 152 ~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
+..+..+.-|||.++....+|+++.+.|..||+|..+.+.. .+|||.|+|.+.++|+.|+..+||..+.|.++.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44566788999999999999999999999999999998874 689999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy3994 226 LAWAPGKGM 234 (282)
Q Consensus 226 v~~a~~~~~ 234 (282)
|.|+-.++.
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999976554
No 50
>KOG0126|consensus
Probab=99.32 E-value=3.5e-13 Score=105.92 Aligned_cols=76 Identities=30% Similarity=0.561 Sum_probs=70.9
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
+.-|||||||...||.+|..+|++||+|+.|.+++ ++||||..|++..+...|+..|||..+.||.|+|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 57899999999999999999999999999999996 899999999999999999999999999999999987754
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
..
T Consensus 115 Yk 116 (219)
T KOG0126|consen 115 YK 116 (219)
T ss_pred cc
Confidence 43
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=1.8e-11 Score=83.82 Aligned_cols=69 Identities=35% Similarity=0.651 Sum_probs=64.6
Q ss_pred EEEecCCCccCcHHHHHhhhccCCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP-----RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 160 ~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~-----kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
+|+|+|||..+++++|+++|+.||.|..+.+... +|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999998863 79999999999999999999999999999999875
No 52
>KOG0131|consensus
Probab=99.30 E-value=4.7e-12 Score=99.75 Aligned_cols=74 Identities=31% Similarity=0.439 Sum_probs=70.6
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
...|||||||+..++++.|.++|-+.|.|.++.+++ ++||||++|.++++|+-|++.||...+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 458999999999999999999999999999999986 78999999999999999999999999999999999988
No 53
>KOG0127|consensus
Probab=99.25 E-value=3.1e-11 Score=109.36 Aligned_cols=79 Identities=29% Similarity=0.492 Sum_probs=73.5
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
..+...|.|.|||+.+...+|+.+|+.||.|..+.|++ -.|||||+|....+|..|+..+||..+.||++-|.||
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 44478999999999999999999999999999999996 3599999999999999999999999999999999999
Q ss_pred cCCC
Q psy3994 230 PGKG 233 (282)
Q Consensus 230 ~~~~ 233 (282)
.++.
T Consensus 194 V~Kd 197 (678)
T KOG0127|consen 194 VDKD 197 (678)
T ss_pred cccc
Confidence 8764
No 54
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=3.2e-11 Score=81.78 Aligned_cols=65 Identities=35% Similarity=0.639 Sum_probs=60.1
Q ss_pred ecCCCccCcHHHHHhhhccCCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 163 IGHLSKLVQEEELSDTFGEYGDVVSINLIPP------RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 163 V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~------kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
|+|||..+++++|+++|++||.|..+.+... +|+|||+|.+.++|.+|+..+++..+.|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999988763 6799999999999999999999999999998873
No 55
>KOG0131|consensus
Probab=99.23 E-value=2.8e-11 Score=95.39 Aligned_cols=116 Identities=22% Similarity=0.337 Sum_probs=89.6
Q ss_pred CChhhHHHHHHHHH-hhccCcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHHHHHhhh
Q psy3994 101 CPPEDKSKIIRVLN-LWQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTF 179 (282)
Q Consensus 101 ~~~~~~~k~~~~l~-~w~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~~l~~~f 179 (282)
..+++++-+++++| +..-++.+....... . ..+...+.++|||||.+.++|..|.+.|
T Consensus 59 ~~eedadYAikiln~VkLYgrpIrv~kas~-----~----------------~~nl~vganlfvgNLd~~vDe~~L~dtF 117 (203)
T KOG0131|consen 59 RTEEDADYAIKILNMVKLYGRPIRVNKASA-----H----------------QKNLDVGANLFVGNLDPEVDEKLLYDTF 117 (203)
T ss_pred echhhhHHHHHHHHHHHhcCceeEEEeccc-----c----------------cccccccccccccccCcchhHHHHHHHH
Confidence 35788888888888 333455444443220 0 1122235889999999999999999999
Q ss_pred ccCCceEEE-EEe------CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCCCC
Q psy3994 180 GEYGDVVSI-NLI------PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMKDK 237 (282)
Q Consensus 180 ~~~G~i~~~-~~~------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~ 237 (282)
+.||.+.+. +++ .++|||||.|.+.+.+.+|+..|||+.+..++++|.++..+..++.
T Consensus 118 safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg~ 182 (203)
T KOG0131|consen 118 SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKGE 182 (203)
T ss_pred HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCcc
Confidence 999987663 333 2689999999999999999999999999999999999998876653
No 56
>KOG0124|consensus
Probab=99.23 E-value=8.6e-12 Score=107.84 Aligned_cols=114 Identities=21% Similarity=0.312 Sum_probs=85.6
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
|+||||.+...+.|+.||..|.+||.|.++.+.+ +||||||+|+-.+.|+.|++.|||..++||.|+|..-..-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 7899999999999999999999999999999875 8999999999999999999999999999999999843322
Q ss_pred CCCC-------CccccccccCCCeeeec-CCCCCcchhhhhhhc-CcccccCCC
Q psy3994 233 GMKD-------KDWKDFWEVQDGVSYIP-YDRLSKEIDYDYLED-GGVFDEDTV 277 (282)
Q Consensus 233 ~~~~-------~~~~~~~~~~~g~~~~p-~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (282)
+.-. ++-+.| ++ +.+-. -.+| .++|++.-++ .|.|-.|.|
T Consensus 194 pQAQpiID~vqeeAk~f---nR-iYVaSvHpDL-Se~DiKSVFEAFG~I~~C~L 242 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKF---NR-IYVASVHPDL-SETDIKSVFEAFGEIVKCQL 242 (544)
T ss_pred cccchHHHHHHHHHHhh---he-EEeeecCCCc-cHHHHHHHHHhhcceeeEEe
Confidence 1110 011111 11 11222 3344 6788886444 677766655
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.22 E-value=4.4e-11 Score=102.96 Aligned_cols=73 Identities=33% Similarity=0.584 Sum_probs=69.3
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
.++|||||||..+++++|+++|..||.+..+.+.. .+|||||+|.+.++|..|+..++|..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 69999999999999999999999999998888874 67999999999999999999999999999999999965
No 58
>KOG0123|consensus
Probab=99.21 E-value=6.6e-11 Score=106.64 Aligned_cols=109 Identities=26% Similarity=0.443 Sum_probs=87.9
Q ss_pred CChhhHHHHHHHHHhhccCcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHHHHHhhhc
Q psy3994 101 CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFG 180 (282)
Q Consensus 101 ~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~~l~~~f~ 180 (282)
..+.++.+++..+|.-.-.+ .+++-++....| +.+||.||++.++..+|.++|+
T Consensus 45 ~~~~da~~A~~~~n~~~~~~-------~~~rim~s~rd~-------------------~~~~i~nl~~~~~~~~~~d~f~ 98 (369)
T KOG0123|consen 45 QQPADAERALDTMNFDVLKG-------KPIRIMWSQRDP-------------------SLVFIKNLDESIDNKSLYDTFS 98 (369)
T ss_pred CCHHHHHHHHHHcCCcccCC-------cEEEeehhccCC-------------------ceeeecCCCcccCcHHHHHHHH
Confidence 56788888888877433222 234444433311 2399999999999999999999
Q ss_pred cCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCCC
Q psy3994 181 EYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMKD 236 (282)
Q Consensus 181 ~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 236 (282)
.||+|.+|++.. ++|| ||+|.+.++|.+|+..+||..+.|+.|.|.....+..+.
T Consensus 99 ~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 99 EFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred hhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 999999999985 7899 999999999999999999999999999999988765543
No 59
>KOG0108|consensus
Probab=99.20 E-value=4.9e-11 Score=108.55 Aligned_cols=77 Identities=22% Similarity=0.488 Sum_probs=72.9
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
+.+||||+|..+++++|..+|+..|.|.+++++. .+||||++|.+.+.|..|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999984 7899999999999999999999999999999999999876
Q ss_pred CCC
Q psy3994 233 GMK 235 (282)
Q Consensus 233 ~~~ 235 (282)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 544
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=1.3e-10 Score=110.01 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=66.5
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccC------------CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEY------------GDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQG 221 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~------------G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g 221 (282)
.....++|||||||+.+|+++|+++|..+ +.|..+.+...+|||||+|.+.++|..|+ .|+|..+.|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 34557899999999999999999999864 45677777789999999999999999999 499999999
Q ss_pred eeEEEEeec
Q psy3994 222 KTITLAWAP 230 (282)
Q Consensus 222 ~~l~v~~a~ 230 (282)
+.|+|....
T Consensus 250 ~~l~v~r~~ 258 (509)
T TIGR01642 250 VFLKIRRPH 258 (509)
T ss_pred ceeEecCcc
Confidence 999997554
No 61
>KOG0146|consensus
Probab=99.14 E-value=4.7e-11 Score=99.41 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 152 GVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 152 ~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
....+.+|+|||-.||...++.||..+|-+||.|.+.++.. +|+||||.|++..+|+.||..|||..|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34567789999999999999999999999999999988763 899999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy3994 226 LAWAPGKG 233 (282)
Q Consensus 226 v~~a~~~~ 233 (282)
|.+.+++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99988875
No 62
>KOG0109|consensus
Probab=99.13 E-value=7.4e-11 Score=99.33 Aligned_cols=75 Identities=32% Similarity=0.579 Sum_probs=71.4
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
..+++++||||.+.++..+|+..|++||.+.+|++++ +|+||.|+-.++|..|++.|+|+++.|+++.|+.+.++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeec--ceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 3569999999999999999999999999999999987 99999999999999999999999999999999999865
No 63
>KOG0146|consensus
Probab=99.12 E-value=6.9e-11 Score=98.40 Aligned_cols=79 Identities=20% Similarity=0.466 Sum_probs=71.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCee---CCeeEEEEe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKL---QGKTITLAW 228 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~---~g~~l~v~~ 228 (282)
..++||||-|...-+|+|++++|..||.|.+|.+.+ +||||||.|.++.+|+.||..|||... ....|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568999999999999999999999999999999986 899999999999999999999999864 346799999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
|...+.+
T Consensus 98 ADTdkER 104 (371)
T KOG0146|consen 98 ADTDKER 104 (371)
T ss_pred ccchHHH
Confidence 9866544
No 64
>KOG0110|consensus
Probab=99.06 E-value=1.3e-10 Score=108.43 Aligned_cols=127 Identities=20% Similarity=0.363 Sum_probs=94.4
Q ss_pred HHHHhhcCChhhHHHHHHHHH-hhccCcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcH
Q psy3994 94 TFQHLYQCPPEDKSKIIRVLN-LWQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQE 172 (282)
Q Consensus 94 ~f~~v~~~~~~~~~k~~~~l~-~w~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te 172 (282)
.|.++-...+++++.+++.++ +-..+..+...+ +. +.|... . ++........+.|+|.|||...+-
T Consensus 561 GfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~-------S~-~k~~~~-~----gK~~~~kk~~tKIlVRNipFeAt~ 627 (725)
T KOG0110|consen 561 GFGFVEFAKPESAQAALKALQGTVLDGHKLELKI-------SE-NKPAST-V----GKKKSKKKKGTKILVRNIPFEATK 627 (725)
T ss_pred ceeEEEecCHHHHHHHHHHhcCceecCceEEEEe-------cc-Cccccc-c----ccccccccccceeeeeccchHHHH
Confidence 444444456788888888887 333444333222 11 101110 0 011222233689999999999999
Q ss_pred HHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 173 EELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 173 ~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
.+++.+|..||.+.+|+++. ++|||||.|-+..+|.+|+.+|.++-+.||+|.+.||....
T Consensus 628 rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 628 REVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999996 69999999999999999999999999999999999998763
No 65
>KOG4206|consensus
Probab=99.06 E-value=4e-10 Score=92.10 Aligned_cols=76 Identities=28% Similarity=0.533 Sum_probs=70.1
Q ss_pred CcEEEecCCCccCcHHHHHh----hhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 158 STTLWIGHLSKLVQEEELSD----TFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~----~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
+.||||.||++.+..++|++ +|++||.|..|...+ .||-|||.|.+.+.|..|+..|+|..+.|+++++.+|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 45999999999999998888 999999999987764 78999999999999999999999999999999999998
Q ss_pred CCC
Q psy3994 231 GKG 233 (282)
Q Consensus 231 ~~~ 233 (282)
.+.
T Consensus 89 s~s 91 (221)
T KOG4206|consen 89 SDS 91 (221)
T ss_pred Ccc
Confidence 763
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=9.4e-10 Score=75.63 Aligned_cols=56 Identities=29% Similarity=0.600 Sum_probs=49.2
Q ss_pred HHHHHhhhc----cCCceEEEE-Ee--------CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 172 EEELSDTFG----EYGDVVSIN-LI--------PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 172 e~~l~~~f~----~~G~i~~~~-~~--------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
+++|+++|+ .||.|.++. +. +++|||||+|.+.++|.+|+..|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999884 32 158999999999999999999999999999999863
No 67
>KOG0147|consensus
Probab=99.01 E-value=4.3e-10 Score=102.21 Aligned_cols=73 Identities=26% Similarity=0.522 Sum_probs=68.1
Q ss_pred EEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 160 ~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.||||||.+++++++|+.+|++||.|..|.+.. .+|||||+|.+.+.|.+|+..|||..+.|+.|+|.....+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 399999999999999999999999999998875 6899999999999999999999999999999999877644
No 68
>KOG0110|consensus
Probab=98.99 E-value=1.1e-09 Score=102.21 Aligned_cols=119 Identities=24% Similarity=0.310 Sum_probs=90.5
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
++|||.||++.+|.+++...|...|.|.++.|.. +.|||||+|.+.++|++|++.|+|+.++|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3399999999999999999999999999998875 3399999999999999999999999999999999999
Q ss_pred cCCCC-CCCccccccccCCC--eeeecCCCCCcchhhhh-hhcCcccccCCCCC
Q psy3994 230 PGKGM-KDKDWKDFWEVQDG--VSYIPYDRLSKEIDYDY-LEDGGVFDEDTVPL 279 (282)
Q Consensus 230 ~~~~~-~~~~~~~~~~~~~g--~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~p~ 279 (282)
..+.. ..+.-...|..-+- +.+||+.-. ..+++. |...|.+..+.+|-
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt--~rEVr~LF~aFGqlksvRlPK 647 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEAT--KREVRKLFTAFGQLKSVRLPK 647 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHH--HHHHHHHHhcccceeeeccch
Confidence 83311 11112233333111 456677665 445554 55578887777774
No 69
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=98.96 E-value=3.2e-10 Score=76.52 Aligned_cols=63 Identities=32% Similarity=0.734 Sum_probs=55.6
Q ss_pred ccceeehhhHHHHHhhhhccCCCCchhhHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccCcccC
Q psy3994 59 KVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFT 123 (282)
Q Consensus 59 kl~~lYv~Dsi~r~~~~~~~~~~~~~~~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~ 123 (282)
||+.|||+|+|+++++++.. +.|...|.+.+..+|.+++. .+++.+.++.+++++|.++++|+
T Consensus 1 KL~~lYl~ndI~q~sk~k~~--~~f~~~F~~~l~~~~~~~~~~~~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 1 KLALLYLANDILQNSKRKNP--DEFAPAFSPVLPDAFAHAYKNVDPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--HCHHHHHHCCHHHHHHHHCCCS-HHHHHHHHHHHHHHHHCTSS-
T ss_pred CcceeehHHHHHHHhhhcCh--HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhCCCCCC
Confidence 68899999999999988843 36999999999999999998 68999999999999999999874
No 70
>KOG0151|consensus
Probab=98.95 E-value=1.4e-09 Score=101.33 Aligned_cols=79 Identities=30% Similarity=0.553 Sum_probs=73.8
Q ss_pred CCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhCCCeeCCe
Q psy3994 152 GVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---------PRGCAFVCMNRRQDAAKALYKLKNTKLQGK 222 (282)
Q Consensus 152 ~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~ 222 (282)
+..++..+++|||||++.++++.|-..|+.||.|.+++++. .+.||||-|.++.+|++|+..|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 44567789999999999999999999999999999999985 578999999999999999999999999999
Q ss_pred eEEEEeec
Q psy3994 223 TITLAWAP 230 (282)
Q Consensus 223 ~l~v~~a~ 230 (282)
.+++.|++
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 99999995
No 71
>KOG0127|consensus
Probab=98.93 E-value=1.6e-09 Score=98.39 Aligned_cols=120 Identities=19% Similarity=0.278 Sum_probs=91.4
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
+.||||++||+.++.++|.++|+.+|+|..+.++. +||||||+|.-.+++++|+...++..+.|+.|+|..|..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 38999999999999999999999999999998885 689999999999999999999999999999999999986
Q ss_pred CCCCC----Cccc-------------cccc---cCCCeeeecCCCCCcchhhhhhhc-CcccccCCCCC
Q psy3994 232 KGMKD----KDWK-------------DFWE---VQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDTVPL 279 (282)
Q Consensus 232 ~~~~~----~~~~-------------~~~~---~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~p~ 279 (282)
+.... ...+ ..-+ -..=+.++||.-- +.+|+..++ .|-+-+..+|.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k--~~dLk~vFs~~G~V~Ei~IP~ 151 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCK--KPDLKNVFSNFGKVVEIVIPR 151 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccC--cHHHHHHHhhcceEEEEEccc
Confidence 53221 0000 0000 0011456677766 558887555 45555556663
No 72
>KOG4661|consensus
Probab=98.89 E-value=3.7e-09 Score=96.47 Aligned_cols=78 Identities=28% Similarity=0.543 Sum_probs=72.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
...+++|||.+|+..+...+|+.+|++||.|+-.+++. -++|+||++.+.++|.+||..||.+.+.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 45678999999999999999999999999999988885 478999999999999999999999999999999999
Q ss_pred ecCC
Q psy3994 229 APGK 232 (282)
Q Consensus 229 a~~~ 232 (282)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 9865
No 73
>KOG0415|consensus
Probab=98.81 E-value=7.2e-09 Score=89.64 Aligned_cols=82 Identities=18% Similarity=0.399 Sum_probs=74.7
Q ss_pred CCCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q psy3994 151 NGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTI 224 (282)
Q Consensus 151 ~~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l 224 (282)
.....++...|||.-|.+-+++++|.-+|+.||.|.+|.+++ +-.||||+|++.++.++|.-.|++..|++++|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 345567788999999999999999999999999999999997 45799999999999999999999999999999
Q ss_pred EEEeecCC
Q psy3994 225 TLAWAPGK 232 (282)
Q Consensus 225 ~v~~a~~~ 232 (282)
.|.|+.+-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99998753
No 74
>KOG4212|consensus
Probab=98.78 E-value=2e-08 Score=89.18 Aligned_cols=74 Identities=23% Similarity=0.397 Sum_probs=67.9
Q ss_pred CcEEEecCCCccCcHHHHHhhhc-cCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFG-EYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~-~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.+.+||.|||.+..+.+|+++|. +.|+|..|.+.. .||||.|+|.+++.+++|++.||.+.+.||+|.|+....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46699999999999999999996 579999999884 799999999999999999999999999999999987654
No 75
>KOG4208|consensus
Probab=98.78 E-value=2.7e-08 Score=80.30 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=70.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccC-CceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEY-GDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~-G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
......+|++.+|..+.+.++..+|.+| |.+..+++.+ +||||||+|++.+.|+-|-+.||+..+.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445789999999999999999999998 7777888754 89999999999999999999999999999999999
Q ss_pred eecCC
Q psy3994 228 WAPGK 232 (282)
Q Consensus 228 ~a~~~ 232 (282)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98876
No 76
>KOG4212|consensus
Probab=98.78 E-value=1.2e-08 Score=90.56 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=68.2
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...+..++|+|.|||.++|+..|++-|..||.|....|+. .+.-+-|.|.+.++|++|+..|+|..+.||.|+|.+.
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3445678999999999999999999999999999998853 3344589999999999999999999999999999873
No 77
>KOG0123|consensus
Probab=98.75 E-value=4.1e-08 Score=88.62 Aligned_cols=72 Identities=32% Similarity=0.515 Sum_probs=66.5
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
..|||| +++||.+|.+.|+++|.+.++++.+ +-|||||.|.+..+|++|+..||...+.|+++++-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 469999 8999999999999999999998875 67999999999999999999999999999999999987554
No 78
>KOG0124|consensus
Probab=98.68 E-value=3.5e-08 Score=85.80 Aligned_cols=75 Identities=16% Similarity=0.345 Sum_probs=69.6
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
-.+|||..+.++.+|++|+..|+.||+|.+|.+-+ +|||||++|.+..+...|+..||-..++|.-|+|..+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 46799999999999999999999999999999985 899999999999999999999999999999999987764
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
.
T Consensus 290 P 290 (544)
T KOG0124|consen 290 P 290 (544)
T ss_pred C
Confidence 4
No 79
>KOG1457|consensus
Probab=98.64 E-value=1.7e-07 Score=76.55 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=64.7
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe-CC------CcEEEEEecCHHHHHHHHHHhCCCee---CCeeEEE
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI-PP------RGCAFVCMNRRQDAAKALYKLKNTKL---QGKTITL 226 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~-~~------kg~aFV~f~~~~~A~~Ai~~l~g~~~---~g~~l~v 226 (282)
..+||||.+||.++...+|..+|..|-.-+.+.+. .+ +.+||++|.++.+|..|+.+|||..+ .+.+|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46999999999999999999999998544444333 12 36999999999999999999999998 5789999
Q ss_pred EeecCCC
Q psy3994 227 AWAPGKG 233 (282)
Q Consensus 227 ~~a~~~~ 233 (282)
++|++..
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 9998653
No 80
>KOG4660|consensus
Probab=98.63 E-value=2e-08 Score=91.74 Aligned_cols=71 Identities=34% Similarity=0.531 Sum_probs=66.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
+...++|+|-|||..+++++|+++|+.||+|..++..+ .+|..||+|.|..+|++|+++|++..+.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45678999999999999999999999999999987765 789999999999999999999999999999988
No 81
>KOG4205|consensus
Probab=98.62 E-value=3.8e-08 Score=86.20 Aligned_cols=79 Identities=27% Similarity=0.429 Sum_probs=69.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..+++|||+|++.++++.|+..|.+||+|..|.+++ +|||+||+|.+.+...+++.. .-+.+.|+.+.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 468999999999999999999999999999999885 789999999998888888753 4567899999999998
Q ss_pred CCCCCC
Q psy3994 231 GKGMKD 236 (282)
Q Consensus 231 ~~~~~~ 236 (282)
++....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 886543
No 82
>KOG0106|consensus
Probab=98.57 E-value=4.9e-08 Score=80.56 Aligned_cols=71 Identities=25% Similarity=0.477 Sum_probs=67.2
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
..+|||+||+.+.+.++.++|..||.+..+.+.. ||+||.|.+..+|..|+..+||..+.|-.+.|.|+++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3589999999999999999999999999998876 9999999999999999999999999998899999995
No 83
>KOG0116|consensus
Probab=98.52 E-value=2.5e-07 Score=84.08 Aligned_cols=74 Identities=12% Similarity=0.216 Sum_probs=64.6
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
..+|||+|||.++++.+|+++|..||.|+...|.. ..+||||+|.+.++++.|+.+ +-..++++++.|+.-++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45699999999999999999999999999887764 228999999999999999986 56678999999988776
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 4
No 84
>KOG0533|consensus
Probab=98.45 E-value=6.6e-07 Score=75.51 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=69.0
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
-+++|+|.|||..+++++|+++|..||.+..+-+.. +.|.|=|.|...++|.+|++.+||..++|+++++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 348899999999999999999999999888887663 679999999999999999999999999999999888765
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 53
No 85
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.44 E-value=1e-06 Score=61.13 Aligned_cols=70 Identities=19% Similarity=0.378 Sum_probs=49.2
Q ss_pred cEEEecCCCccCcHH----HHHhhhccCC-ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 159 TTLWIGHLSKLVQEE----ELSDTFGEYG-DVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 159 ~~l~V~nl~~~~te~----~l~~~f~~~G-~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
+.|||.|||.+.+.. -|++++..+| .|.++ ..+.|+|.|.+.+.|++|.+.|+|..+.|++|.|++....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 579999999887764 4677777885 56666 4589999999999999999999999999999999998543
No 86
>KOG1190|consensus
Probab=98.43 E-value=1.4e-06 Score=76.98 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=68.8
Q ss_pred CcEEEecCCCc-cCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 158 STTLWIGHLSK-LVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 158 ~~~l~V~nl~~-~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
+..|.|.||.. .+|.+.|..+|+.||.|.+|+|.. .+.-|.|+|.+...|+.|+..|+|+.+.|++|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 58899999984 579999999999999999999986 5578999999999999999999999999999999999854
No 87
>KOG4205|consensus
Probab=98.39 E-value=4e-07 Score=79.79 Aligned_cols=78 Identities=24% Similarity=0.457 Sum_probs=69.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
....+|||+||.++++.++++.|.+||.|..+.++. ++||+||.|.++++..+++. ...+.+.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 356999999999999999999999999888877763 78999999999999999886 57889999999999999
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++...
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 87544
No 88
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=98.39 E-value=1.7e-06 Score=67.00 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=99.6
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCch
Q psy3994 5 KTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFG 84 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~ 84 (282)
-.|.+.|+.|+. |..+|++.+..|++|......+..+|-..+.+..=..++.++|.+|+++..+....+....|+
T Consensus 8 ~~F~~~L~~L~a-----S~qSi~kaa~fAlk~~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv 82 (139)
T PF12243_consen 8 MQFTQLLRRLNA-----SQQSIQKAAQFALKNRDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYV 82 (139)
T ss_pred HHHHHHHHHcch-----hHHHHHHHHHHHHHccccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhH
Confidence 356777777754 445999999999999999999999999999888778899999999999999877776677899
Q ss_pred hhHHHHHHHHHHHhhc-CCh--hhHHHHHHHHHhhccCcccCCccccc
Q psy3994 85 PRFARNLKATFQHLYQ-CPP--EDKSKIIRVLNLWQKNEVFTPDIIHP 129 (282)
Q Consensus 85 ~~f~~~l~~~f~~v~~-~~~--~~~~k~~~~l~~w~~~~~f~~~~i~~ 129 (282)
.....+|...+..+.+ -+. .-...+.++|..|..++.++++.+..
T Consensus 83 ~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k~~l~~~~~~~ 130 (139)
T PF12243_consen 83 SMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKKKILDPEEYEE 130 (139)
T ss_pred HHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999988887 222 46677889999999999888765443
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.32 E-value=3.4e-06 Score=61.20 Aligned_cols=75 Identities=24% Similarity=0.248 Sum_probs=63.2
Q ss_pred cEEEecCCCccCcHHHHHhhhccC--CceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeC----CeeEEE
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEY--GDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQ----GKTITL 226 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~--G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~----g~~l~v 226 (282)
+||-+.|||...|.++|.+++... |....+-++. +.|||||.|.+.+.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999999988653 6655555552 7899999999999999999999999873 567889
Q ss_pred EeecCCC
Q psy3994 227 AWAPGKG 233 (282)
Q Consensus 227 ~~a~~~~ 233 (282)
.||+-+|
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9998665
No 90
>KOG1548|consensus
Probab=98.30 E-value=1.7e-06 Score=74.94 Aligned_cols=75 Identities=20% Similarity=0.390 Sum_probs=67.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEE--------EEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCee
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVS--------INLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKT 223 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~--------~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~ 223 (282)
.++.|||.|||.++|.+++.++|++||-|.+ |++.+ .+|=|.+.|.-+++...|+..|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4678999999999999999999999998754 45543 5899999999999999999999999999999
Q ss_pred EEEEeecC
Q psy3994 224 ITLAWAPG 231 (282)
Q Consensus 224 l~v~~a~~ 231 (282)
|+|+.|+-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999973
No 91
>KOG4209|consensus
Probab=98.29 E-value=1.4e-06 Score=73.50 Aligned_cols=76 Identities=18% Similarity=0.402 Sum_probs=68.6
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...+.+||||+...+|.+++...|+.||.+..+.+.. ++||+||.|.+.+.++.|+. |+|..+.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 3458899999999999999999999999998777774 68999999999999999999 9999999999999888
Q ss_pred cCC
Q psy3994 230 PGK 232 (282)
Q Consensus 230 ~~~ 232 (282)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 644
No 92
>KOG4454|consensus
Probab=98.21 E-value=5.6e-07 Score=73.33 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=67.5
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
..+||||+|+...++|+-|.++|-+-|.|..+.|+. ...||||.|.++.+..-|++.+||..+.++.+++.+-.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 458999999999999999999999999999999885 234999999999999999999999999999888877653
No 93
>KOG4206|consensus
Probab=97.97 E-value=3.3e-05 Score=63.59 Aligned_cols=77 Identities=26% Similarity=0.373 Sum_probs=69.5
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeec
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQ-GKTITLAWAP 230 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~a~ 230 (282)
..+++..+|+.|||..++.+.+..+|.+|+....++++. .++.|||+|.+...|..|.+.++|..+. ...++|.+|+
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 356778999999999999999999999999999999987 6789999999999999999999999885 7888888775
No 94
>KOG0226|consensus
Probab=97.93 E-value=7.8e-06 Score=68.22 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=65.3
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEe------CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
...||.|.|...++++.|-+.|.+|-.....+++ .++||+||.|.+..++.+|+.+|+|..++.++|+++-...
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 4789999999999999999999999665555554 3899999999999999999999999999999998876655
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
+
T Consensus 270 k 270 (290)
T KOG0226|consen 270 K 270 (290)
T ss_pred H
Confidence 4
No 95
>KOG1457|consensus
Probab=97.90 E-value=1.2e-05 Score=65.84 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=57.2
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP--PRGCAFVCMNRRQDAAKALYKLKNTKLQ 220 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~--~kg~aFV~f~~~~~A~~Ai~~l~g~~~~ 220 (282)
.......||||.||.+++||++|+.+|+.|.....+++.. .-..||++|++.+.|..|+..|+|..+.
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 3344567999999999999999999999997766666653 4468999999999999999999998773
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.89 E-value=3.1e-05 Score=57.36 Aligned_cols=70 Identities=27% Similarity=0.450 Sum_probs=44.9
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCC-----eeCCeeEEEEe
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT-----KLQGKTITLAW 228 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~-----~~~g~~l~v~~ 228 (282)
+.|.+.+++..++.++|++.|+.||.|..|.+...-.-|+|.|.+.++|+.|+..+... .+.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 56888889999999999999999999999999988889999999999999999877543 34555544443
No 97
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.87 E-value=3.3e-05 Score=49.70 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=44.6
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHH
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKAL 211 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai 211 (282)
+.|-|.+.++... +.+...|..||+|..+.+.....+.+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5788888887765 446668999999999999877899999999999999985
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.83 E-value=3.5e-05 Score=66.80 Aligned_cols=75 Identities=17% Similarity=0.414 Sum_probs=62.0
Q ss_pred CCcEEEecCCCccCcHHH------HHhhhccCCceEEEEEeCC-------Cc-E-EEEEecCHHHHHHHHHHhCCCeeCC
Q psy3994 157 CSTTLWIGHLSKLVQEEE------LSDTFGEYGDVVSINLIPP-------RG-C-AFVCMNRRQDAAKALYKLKNTKLQG 221 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~------l~~~f~~~G~i~~~~~~~~-------kg-~-aFV~f~~~~~A~~Ai~~l~g~~~~g 221 (282)
...-+||-+||+.+..++ -.++|++||.|..+.+.+. .+ + .||+|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 446789999998775554 3578999999999988751 12 2 3999999999999999999999999
Q ss_pred eeEEEEeecC
Q psy3994 222 KTITLAWAPG 231 (282)
Q Consensus 222 ~~l~v~~a~~ 231 (282)
|.|+..++.-
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999999874
No 99
>KOG0106|consensus
Probab=97.82 E-value=1.4e-05 Score=66.26 Aligned_cols=73 Identities=32% Similarity=0.435 Sum_probs=64.8
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
....+.+.|.+++..+.+.+|.+.|.++|.+..... .++++||+|.+.++|.+|+..++|..+.|+.|.+...
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 445688999999999999999999999999965555 5699999999999999999999999999999999444
No 100
>KOG4211|consensus
Probab=97.75 E-value=0.0002 Score=65.22 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=80.5
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
-.|-+.+||+.+|+++|.++|+.+ .|+++.+++ ..|-|||+|.+.+++++|++ .+...+..|-|.|--+.+...
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~ 88 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEA 88 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccc
Confidence 456678999999999999999999 478877775 67899999999999999998 476777888899987765533
Q ss_pred CCC-----ccccccccCCCeeeecCCCCCcchhhhhhhcCcccccC
Q psy3994 235 KDK-----DWKDFWEVQDGVSYIPYDRLSKEIDYDYLEDGGVFDED 275 (282)
Q Consensus 235 ~~~-----~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~ 275 (282)
.-. ....-.+.--.+.-+||.- |++|+..|+.|-+|-..
T Consensus 89 d~~~~~~g~~s~~~d~vVRLRGLPfsc--te~dI~~FFaGL~Iv~~ 132 (510)
T KOG4211|consen 89 DWVMRPGGPNSSANDGVVRLRGLPFSC--TEEDIVEFFAGLEIVPD 132 (510)
T ss_pred cccccCCCCCCCCCCceEEecCCCccC--cHHHHHHHhcCCccccc
Confidence 210 0000011111123457764 48999999988555443
No 101
>KOG0120|consensus
Probab=97.75 E-value=2.1e-05 Score=72.69 Aligned_cols=79 Identities=16% Similarity=0.311 Sum_probs=71.5
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.....+|||+||-..++.+++++...||.+....+.. ++||||.+|.+......|+..|||..+++++|.|+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3457899999999999999999999999998877764 7999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy3994 230 PGKGM 234 (282)
Q Consensus 230 ~~~~~ 234 (282)
-....
T Consensus 367 ~~g~~ 371 (500)
T KOG0120|consen 367 IVGAS 371 (500)
T ss_pred hccch
Confidence 76543
No 102
>KOG1456|consensus
Probab=97.57 E-value=0.00044 Score=60.93 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=69.5
Q ss_pred hcCCCCCCCCcEEEecCCC--ccCcHHHHHhhhccCCceEEEEEeCCC-cEEEEEecCHHHHHHHHHHhCCCee-CC-ee
Q psy3994 149 ARNGVENMCSTTLWIGHLS--KLVQEEELSDTFGEYGDVVSINLIPPR-GCAFVCMNRRQDAAKALYKLKNTKL-QG-KT 223 (282)
Q Consensus 149 ~~~~~~~~~~~~l~V~nl~--~~~te~~l~~~f~~~G~i~~~~~~~~k-g~aFV~f~~~~~A~~Ai~~l~g~~~-~g-~~ 223 (282)
+..+....++..|.+.=|. ..+|-+-|..+....|.|.+|.+.+.. --|.|+|++.+.|++|...|||..| .| .+
T Consensus 111 R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 111 RPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred cCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccccccccee
Confidence 3445555566777776555 457889999999999999999888644 4699999999999999999999987 34 58
Q ss_pred EEEEeecCCCC
Q psy3994 224 ITLAWAPGKGM 234 (282)
Q Consensus 224 l~v~~a~~~~~ 234 (282)
|+|++|++...
T Consensus 191 LKIeyAkP~rl 201 (494)
T KOG1456|consen 191 LKIEYAKPTRL 201 (494)
T ss_pred EEEEecCccee
Confidence 99999998754
No 103
>KOG1190|consensus
Probab=97.54 E-value=0.00029 Score=62.73 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=66.2
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEE-EEe-CCCcEEEEEecCHHHHHHHHHHhCCCeeCCe-eEEEEeecC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSI-NLI-PPRGCAFVCMNRRQDAAKALYKLKNTKLQGK-TITLAWAPG 231 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~-~~~-~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~-~l~v~~a~~ 231 (282)
-+++.++...|+|+.++|++++..|..-|...+. +.. .++.+|.+.+.+.++|..|+..++.+.+++. .|||+|+++
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 3567899999999999999999999998776544 333 4789999999999999999999999999655 899999875
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.40 E-value=0.0011 Score=48.54 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=53.4
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEE-------------EeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCe-e
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSIN-------------LIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGK-T 223 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~-------------~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~-~ 223 (282)
.+.|.|-+.|+..+ ..+.+.|++||.|.+.. .......--|+|.++.+|.+|+. -||..+.|. .
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 46788888998854 66788999999998875 45577899999999999999998 599999886 5
Q ss_pred EEEEeec
Q psy3994 224 ITLAWAP 230 (282)
Q Consensus 224 l~v~~a~ 230 (282)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5677764
No 105
>KOG1548|consensus
Probab=97.38 E-value=0.00067 Score=59.24 Aligned_cols=80 Identities=16% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCCCCCcEEEecCCCc----cCc-------HHHHHhhhccCCceEEEEEe--CCCcEEEEEecCHHHHHHHHHHhCCCee
Q psy3994 153 VENMCSTTLWIGHLSK----LVQ-------EEELSDTFGEYGDVVSINLI--PPRGCAFVCMNRRQDAAKALYKLKNTKL 219 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~----~~t-------e~~l~~~f~~~G~i~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~l~g~~~ 219 (282)
......++|.+.|+=. ..+ .++|++-..+||.|.+|.+. ++.|.+-|.|.+.++|..||+.|+|..+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3345568888888742 122 24566778899999999888 6899999999999999999999999999
Q ss_pred CCeeEEEEeecCC
Q psy3994 220 QGKTITLAWAPGK 232 (282)
Q Consensus 220 ~g~~l~v~~a~~~ 232 (282)
+||.|......++
T Consensus 340 dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 340 DGRQLTASIWDGK 352 (382)
T ss_pred cceEEEEEEeCCc
Confidence 9999998877655
No 106
>KOG0151|consensus
Probab=97.33 E-value=0.00024 Score=67.23 Aligned_cols=121 Identities=16% Similarity=0.336 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--HhcCCCCccceeehhhHHHHHhhhhccCCCC
Q psy3994 5 KTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFI--IKCKPEYKVPALYVIDSLVRQSRHQFQDKDV 82 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~--~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~ 82 (282)
..||..|..|+- .+++|..+-.+|++|++++..||.++...+ +..+...|+.-|||+.+|+-|.-..-.....
T Consensus 434 dklE~liR~LTp-----Ek~sIg~aM~FalenA~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~ 508 (877)
T KOG0151|consen 434 DKLEDLIRGLTP-----EKSSIGDAMVFALENADAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASA 508 (877)
T ss_pred HHHHHHHHhcCc-----ccchHHHHHHHHHhhhhhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 468888888844 455999999999999999999999998766 3445688999999999999886444333334
Q ss_pred chhhHHHHHHHHHHHhhc----C-----ChhhHHHHHHHHHhhccCcccCCcccccc
Q psy3994 83 FGPRFARNLKATFQHLYQ----C-----PPEDKSKIIRVLNLWQKNEVFTPDIIHPL 130 (282)
Q Consensus 83 ~~~~f~~~l~~~f~~v~~----~-----~~~~~~k~~~~l~~w~~~~~f~~~~i~~~ 130 (282)
|-..|...|...|..++. . .+.-.+++++++..|..=-+|+.+.+..+
T Consensus 509 YR~~FEa~L~~Ifd~l~~~yr~I~gRIkaE~fkqRV~kVirvWedW~ifpe~~l~~l 565 (877)
T KOG0151|consen 509 YRKSFEATLEDIFDDLNDLYRSIGGRIKAEAFKQRVMKVIRVWEDWAIFPEDFLIGL 565 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 555566667766654432 2 24556788889988886666666655443
No 107
>KOG3152|consensus
Probab=97.31 E-value=0.00013 Score=61.14 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=58.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC--------------C----cEEEEEecCHHHHHHHHHHhCCCe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP--------------R----GCAFVCMNRRQDAAKALYKLKNTK 218 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~--------------k----g~aFV~f~~~~~A~~Ai~~l~g~~ 218 (282)
..-.||+++||+.++..-|+++|+.||+|-+|.+.+. + .-|.|+|.+...|.+....|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988751 1 125789999999999999999999
Q ss_pred eCCee
Q psy3994 219 LQGKT 223 (282)
Q Consensus 219 ~~g~~ 223 (282)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 108
>KOG4210|consensus
Probab=97.30 E-value=0.0002 Score=62.66 Aligned_cols=77 Identities=21% Similarity=0.377 Sum_probs=68.6
Q ss_pred CCcEEE-ecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 157 CSTTLW-IGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 157 ~~~~l~-V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++| |++++..+++++|+..|..+|.|..++++. .+|||+|.|.+...+..++.. +...+.++++.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445666 999999999999999999999999999885 689999999999999999886 788899999999999
Q ss_pred cCCCC
Q psy3994 230 PGKGM 234 (282)
Q Consensus 230 ~~~~~ 234 (282)
.+.+.
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 87753
No 109
>KOG0112|consensus
Probab=97.30 E-value=0.00033 Score=68.01 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=75.2
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecC
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQG--KTITLAWAPG 231 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~a~~ 231 (282)
.....+.+|+|+|..++....|...|..||.|..|.+-+...||+|.|.+...|+.|+..|-|..++| ++++|.+|..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 55678999999999999999999999999999999998888999999999999999999999999965 6799999987
Q ss_pred CCCCC
Q psy3994 232 KGMKD 236 (282)
Q Consensus 232 ~~~~~ 236 (282)
.+..+
T Consensus 531 ~~~~P 535 (975)
T KOG0112|consen 531 PGATP 535 (975)
T ss_pred CCCCh
Confidence 65443
No 110
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.26 E-value=0.0016 Score=50.47 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=53.2
Q ss_pred cEEEecCCC------ccCcH---HHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 159 TTLWIGHLS------KLVQE---EELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 159 ~~l~V~nl~------~~~te---~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.||.|.-+. ...++ .+|-+.|..||++.-+++.. +.-.|+|.+-++|-+|+. ++|.++.|+.|+|+..
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 667665444 12332 36888899999999999987 678999999999999997 8999999999999998
Q ss_pred cCCCCC
Q psy3994 230 PGKGMK 235 (282)
Q Consensus 230 ~~~~~~ 235 (282)
.+....
T Consensus 105 tpdW~~ 110 (146)
T PF08952_consen 105 TPDWLK 110 (146)
T ss_dssp ------
T ss_pred CccHHH
Confidence 876543
No 111
>KOG1855|consensus
Probab=97.24 E-value=0.00022 Score=63.80 Aligned_cols=62 Identities=31% Similarity=0.364 Sum_probs=54.5
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC-------------------CcEEEEEecCHHHHHHHHHHhCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP-------------------RGCAFVCMNRRQDAAKALYKLKN 216 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~-------------------kg~aFV~f~~~~~A~~Ai~~l~g 216 (282)
.++++|.+-|||.+-.-+-|.++|+.+|.|..|+|..+ +-||+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45789999999988777889999999999999999852 56999999999999999998754
Q ss_pred C
Q psy3994 217 T 217 (282)
Q Consensus 217 ~ 217 (282)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 112
>KOG2416|consensus
Probab=97.20 E-value=0.00029 Score=65.48 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=69.4
Q ss_pred CCCCCCCcEEEecCCCccCcHHHHHhhhc-cCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCee---CCeeEEEE
Q psy3994 152 GVENMCSTTLWIGHLSKLVQEEELSDTFG-EYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKL---QGKTITLA 227 (282)
Q Consensus 152 ~~~~~~~~~l~V~nl~~~~te~~l~~~f~-~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~---~g~~l~v~ 227 (282)
+.....+..|||.||-.-+|.-+|+.+++ ..|.|....|-+-|..|||.|.+.++|.+...+|||..+ +++.|.+.
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 44556788999999999999999999998 567777776667889999999999999999999999987 67789999
Q ss_pred eecC
Q psy3994 228 WAPG 231 (282)
Q Consensus 228 ~a~~ 231 (282)
|+..
T Consensus 518 f~~~ 521 (718)
T KOG2416|consen 518 FVRA 521 (718)
T ss_pred ecch
Confidence 9874
No 113
>KOG1456|consensus
Probab=97.18 E-value=0.0024 Score=56.45 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=69.6
Q ss_pred CCCCCCcEEEecCCCc-cCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 153 VENMCSTTLWIGHLSK-LVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~-~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
....+++.+-|-+|.. .++-+.|-.+|-.||.|.+|++++ ..|-|.|++.+..+.++|+..||+..+.|.+|.|..++
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 4445678899999985 467788999999999999999997 55899999999999999999999999999999998887
Q ss_pred C
Q psy3994 231 G 231 (282)
Q Consensus 231 ~ 231 (282)
-
T Consensus 362 Q 362 (494)
T KOG1456|consen 362 Q 362 (494)
T ss_pred c
Confidence 3
No 114
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=97.18 E-value=0.00087 Score=50.48 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=76.3
Q ss_pred HHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchh
Q psy3994 7 FNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGP 85 (282)
Q Consensus 7 f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~ 85 (282)
|+..+.+.+....+ -+..-|..++.........+..++..+.+.+.+.+|..++.+|+|+|++++|. ...|..
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~------g~~f~~ 74 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNC------GERFHQ 74 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc------cHHHHH
Confidence 45566666554444 67778999999887766778899999999999999999999999999999998 334444
Q ss_pred hHHHHHH--HHHHH-----hhc-CChhhHHHHHHHHHhhc
Q psy3994 86 RFARNLK--ATFQH-----LYQ-CPPEDKSKIIRVLNLWQ 117 (282)
Q Consensus 86 ~f~~~l~--~~f~~-----v~~-~~~~~~~k~~~~l~~w~ 117 (282)
.++.+.. +.+.+ ... .+...+.++..++..|.
T Consensus 75 ~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 75 EVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 4444321 12111 111 36778899999999985
No 115
>KOG0147|consensus
Probab=97.13 E-value=0.00088 Score=61.85 Aligned_cols=59 Identities=25% Similarity=0.408 Sum_probs=52.1
Q ss_pred HHHHhhhccCCceEEEEEeCCC-cEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 173 EELSDTFGEYGDVVSINLIPPR-GCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 173 ~~l~~~f~~~G~i~~~~~~~~k-g~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
+++.+-.++||.|..|.+.++. ||-||.|.+.+.|..|+.+|||.++.|+.|...|-.-
T Consensus 468 edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 4556666999999999988744 9999999999999999999999999999999988753
No 116
>KOG0120|consensus
Probab=97.11 E-value=0.0014 Score=60.86 Aligned_cols=60 Identities=20% Similarity=0.389 Sum_probs=51.5
Q ss_pred HHHHhhhccCCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 173 EELSDTFGEYGDVVSINLIP---------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 173 ~~l~~~f~~~G~i~~~~~~~---------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
++++.-+++||.|.+|.+++ .-|.-||+|.+.+++++|+.+|+|.++.||.+...|-...
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 34666678999999999986 3577899999999999999999999999999988886543
No 117
>KOG1995|consensus
Probab=96.96 E-value=0.00078 Score=59.17 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=67.5
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEE--------Ee------CCCcEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSIN--------LI------PPRGCAFVCMNRRQDAAKALYKLKNTKLQG 221 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~--------~~------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g 221 (282)
....+|||-+||..++++++.++|.++|.|..=+ +- .+|+=|-|.|.+..+|+.|+..+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3457899999999999999999999999875321 11 178999999999999999999999999999
Q ss_pred eeEEEEeecCCC
Q psy3994 222 KTITLAWAPGKG 233 (282)
Q Consensus 222 ~~l~v~~a~~~~ 233 (282)
.+|+|..|..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999998664
No 118
>KOG4676|consensus
Probab=96.94 E-value=0.0024 Score=56.73 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=60.3
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
..|-|.||.+.+|.++++.+|+..|.|..+++.+ ....|||.|.+...+..|. .|.++.+-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 4799999999999999999999999999998875 3578999999999988885 47778877777766555
Q ss_pred c
Q psy3994 230 P 230 (282)
Q Consensus 230 ~ 230 (282)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 119
>KOG2193|consensus
Probab=96.78 E-value=0.00078 Score=60.32 Aligned_cols=79 Identities=30% Similarity=0.364 Sum_probs=63.8
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCC-eeCCeeEEEEeecCCCCCCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT-KLQGKTITLAWAPGKGMKDK 237 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~-~~~g~~l~v~~a~~~~~~~~ 237 (282)
..+|+|||.+..+..+|+.+|....--.+-.++...||+||.+.+..-|.+|++.++|. ++.|.++.|....++..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsr 81 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSR 81 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhh
Confidence 35899999999999999999986522122223335599999999999999999999988 58999999999988865543
No 120
>KOG0129|consensus
Probab=96.77 E-value=0.0038 Score=57.42 Aligned_cols=64 Identities=20% Similarity=0.445 Sum_probs=50.5
Q ss_pred CCCCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe---------CCCc---EEEEEecCHHHHHHHHHHhC
Q psy3994 151 NGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI---------PPRG---CAFVCMNRRQDAAKALYKLK 215 (282)
Q Consensus 151 ~~~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~---------~~kg---~aFV~f~~~~~A~~Ai~~l~ 215 (282)
.......++.||||+||++++|+.|...|..||.+. +..+ .++| |+|+.|+++.+.+.-+.+..
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 345556789999999999999999999999999743 2223 2567 99999999888887766543
No 121
>KOG2314|consensus
Probab=96.63 E-value=0.0086 Score=55.71 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=59.5
Q ss_pred CCCcEEEecCCCccCc------HHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCee-CCee
Q psy3994 156 MCSTTLWIGHLSKLVQ------EEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKL-QGKT 223 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~t------e~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~-~g~~ 223 (282)
.....|+|.|+|---. ..-|..+|+++|++....++. .+||.|++|.+...|+.|++.|||..+ ..++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3457889999985322 134778899999999998873 689999999999999999999999998 5677
Q ss_pred EEEEee
Q psy3994 224 ITLAWA 229 (282)
Q Consensus 224 l~v~~a 229 (282)
..|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777543
No 122
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.61 E-value=0.012 Score=45.36 Aligned_cols=75 Identities=21% Similarity=0.338 Sum_probs=58.3
Q ss_pred CCCCcEEEecCCCccCc-HH---HHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 155 NMCSTTLWIGHLSKLVQ-EE---ELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~t-e~---~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
.++-.||.|.=|..++. .+ .+...++.||+|.++... .+.-|.|.|.+..+|.+|+.+++. ...|..+++.|-.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 33457888887776653 23 455567889999999754 567899999999999999999886 5678889999976
Q ss_pred C
Q psy3994 231 G 231 (282)
Q Consensus 231 ~ 231 (282)
.
T Consensus 161 r 161 (166)
T PF15023_consen 161 R 161 (166)
T ss_pred c
Confidence 4
No 123
>KOG0129|consensus
Probab=96.53 E-value=0.0054 Score=56.43 Aligned_cols=57 Identities=25% Similarity=0.417 Sum_probs=51.8
Q ss_pred CCcEEEecCCCccCcHHHHHhhhc-cCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHH
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFG-EYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYK 213 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~-~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~ 213 (282)
+.+|||||+||.-++.++|-.+|. -||.|..+-|-. ++|=|=|+|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 568999999999999999999998 699999987764 689999999999999999974
No 124
>KOG4211|consensus
Probab=96.50 E-value=0.0084 Score=54.90 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=56.8
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEE-EEEe-----CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVS-INLI-----PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~-~~~~-----~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.....|-+.+||+.+|+++|.++|+..-.+.. +.++ ++.|-|||+|++.+.|+.|+.. |...|+-|-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 34578889999999999999999998744333 2223 2568899999999999999975 556677777777555
Q ss_pred c
Q psy3994 230 P 230 (282)
Q Consensus 230 ~ 230 (282)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 125
>KOG0105|consensus
Probab=96.48 E-value=0.011 Score=47.55 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=58.6
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~ 220 (282)
......-.|.|.+||+..++++|+++..+-|.|....+.+. |.+.|+|...++.+-|+..|..+.+.
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 33445568899999999999999999999999999888765 69999999999999999999887763
No 126
>KOG0112|consensus
Probab=96.37 E-value=0.0011 Score=64.57 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=68.4
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
.....++|||+|||+..+++.+++..|..+|.+.+|.+-. ...||||.|.+...+-.|...+.+..|....++..
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3445689999999999999999999999999999998864 35799999999999999999999998866667777
Q ss_pred eecCC
Q psy3994 228 WAPGK 232 (282)
Q Consensus 228 ~a~~~ 232 (282)
+..++
T Consensus 447 lG~~k 451 (975)
T KOG0112|consen 447 LGQPK 451 (975)
T ss_pred ccccc
Confidence 76543
No 127
>KOG4849|consensus
Probab=96.06 E-value=0.0052 Score=53.86 Aligned_cols=69 Identities=14% Similarity=0.325 Sum_probs=55.1
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCc--eEEEEEe------CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGD--VVSINLI------PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITL 226 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~--i~~~~~~------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 226 (282)
.-.+|||||-|++|+++|.+.+...|- +..+++. .+||||.|...+..+.++.++.|-...+.|..=.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 357899999999999999999887763 3333333 28999999999999999999998888888865433
No 128
>KOG2202|consensus
Probab=95.99 E-value=0.003 Score=53.19 Aligned_cols=58 Identities=24% Similarity=0.417 Sum_probs=48.3
Q ss_pred HHHhhhc-cCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 174 ELSDTFG-EYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 174 ~l~~~f~-~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
++...|+ +||+|+++.+-. -+|-.+|.|...++|++|+..|||..+.|++|...+..-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3444444 899999986653 467899999999999999999999999999999888753
No 129
>KOG4307|consensus
Probab=95.86 E-value=0.028 Score=53.72 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=58.9
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceE-EEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVV-SINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~-~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
+.|-+.|.|.+++-+|+-++|..|-.+- +|.+-. ..|-|.|.|++.++|.+|..-|+++.|..+.+.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788899999999999999999995433 333322 568899999999999999999999999999988764
No 130
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.61 E-value=0.041 Score=44.96 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=48.8
Q ss_pred HHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhC--CCeeCCeeEEEEeecCC
Q psy3994 172 EEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLK--NTKLQGKTITLAWAPGK 232 (282)
Q Consensus 172 e~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~--g~~~~g~~l~v~~a~~~ 232 (282)
.+.|+++|..|+.+..+...++-+-..|.|.+.++|.+|...|+ +..+.|..++|.++...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 47899999999999999888877888999999999999999999 99999999999999644
No 131
>KOG2135|consensus
Probab=95.24 E-value=0.013 Score=53.50 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=62.8
Q ss_pred CCCcEEEecCCCccC-cHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 156 MCSTTLWIGHLSKLV-QEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~-te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
...+.+-+.-.|... +-++|...|.+||+|..|.+--+.-.|.|+|.++.+|-.|-. .++..+++|.|+|.|-.+.+
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 344556666566655 558899999999999999887666789999999999977764 68999999999999998754
No 132
>KOG1996|consensus
Probab=95.10 E-value=0.059 Score=46.41 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=48.5
Q ss_pred HHHHHhhhccCCceEEEEEeC------C-CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 172 EEELSDTFGEYGDVVSINLIP------P-RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 172 e~~l~~~f~~~G~i~~~~~~~------~-kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
++++++-.++||.|..|.+.. + ----||+|+..++|.+|+--|||..++||.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 356788889999999987663 2 2346999999999999999999999999998766643
No 133
>KOG4368|consensus
Probab=94.80 E-value=0.072 Score=49.95 Aligned_cols=125 Identities=19% Similarity=0.320 Sum_probs=78.6
Q ss_pred hHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHhc--CCCCccceeehhhHHHHHhhhhcc
Q psy3994 4 IKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHV---VQSVEKFIIKC--KPEYKVPALYVIDSLVRQSRHQFQ 78 (282)
Q Consensus 4 ~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~---v~~~~~~~~~~--~p~~kl~~lYv~Dsi~r~~~~~~~ 78 (282)
|.+|+..|+.+.+ + -|+.-|..-.+|...|.+.-.+. +..+.+.|+.- .-..+|-++|+|+++.---+++..
T Consensus 103 ~~~~~~~l~~~~~-~--c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcqrk~~ 179 (757)
T KOG4368|consen 103 MNEFDNLLQPIID-T--CTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQA 179 (757)
T ss_pred HHHHHHHHHHHHH-H--HhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 7899999999976 2 46667777778888887654332 22233333332 346789999999998655444333
Q ss_pred CCCCchhhHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccCcccCCccccccccC
Q psy3994 79 DKDVFGPRFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDM 133 (282)
Q Consensus 79 ~~~~~~~~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~ 133 (282)
.. -...+++-+.-.++.-+. +.+...+++.++|-.|++++.|..++++.+..-
T Consensus 180 ~~--~~~~l~~~v~~~yc~~~~~~~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~ 233 (757)
T KOG4368|consen 180 RE--LLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSP 233 (757)
T ss_pred HH--HHHHHHHHhHHHHHhhhhhhHhHHHHHHHHHHHHHhhcCchhHHHHHHhhhh
Confidence 21 111233333333333333 334455668889999999999999988776653
No 134
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.76 E-value=0.16 Score=35.60 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=40.7
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLK 215 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~ 215 (282)
+..+|+ .|..+...||.++|+.||.|.---+. -.-|||...+++.|..++..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhc
Confidence 556666 99999999999999999986544333 3669999999999999998876
No 135
>KOG0128|consensus
Probab=94.58 E-value=0.019 Score=55.90 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=66.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
....++|.|.|+..|.++++.++..+|.+.+++++. ++|.|||.|.+..+|.+++....+..+..+.+.|..+.+
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 356899999999999999999999999999988774 789999999999999999988888777777777777655
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 136
>KOG4285|consensus
Probab=94.49 E-value=0.15 Score=44.24 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCee-EEEEeecCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKT-ITLAWAPGK 232 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~-l~v~~a~~~ 232 (282)
...-|-|-+.|+.-. ..+..+|++||+|++........+-.|.|.++.+|++|+. .||..|+|.. |-|.-...+
T Consensus 196 ~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ccceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 345566667777544 5677899999999998777677899999999999999998 4999998764 456654444
No 137
>KOG4574|consensus
Probab=94.34 E-value=0.057 Score=52.72 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=81.4
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCee--CCeeEEEEeecCCCCCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKL--QGKTITLAWAPGKGMKD 236 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~--~g~~l~v~~a~~~~~~~ 236 (282)
.+.++.|.+-+.+-..|..++..||.+.+.+..++-..|.|.|.+.+.|..|..+++|..+ .|-+.+|.+|+.-.+-.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 4455666666777788999999999999999988888999999999999999999999976 68889999998654321
Q ss_pred CccccccccCCCeeeecCCCCCcchhhhh----hhcCcccccCCCC
Q psy3994 237 KDWKDFWEVQDGVSYIPYDRLSKEIDYDY----LEDGGVFDEDTVP 278 (282)
Q Consensus 237 ~~~~~~~~~~~g~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~p 278 (282)
..+ .-.|+..++-+++ --++|.. +..+|-+..-+++
T Consensus 379 p~l-----n~~g~nn~~~~~~-l~e~ln~g~~n~q~~gsl~~p~f~ 418 (1007)
T KOG4574|consen 379 PPL-----NLTGYNNFNHQPL-LQEQLNTGLFNTQSQGSLKSPVFE 418 (1007)
T ss_pred CCc-----CcccccCCCCCcc-hhhhhccccceeccCCcccccccc
Confidence 111 2344555555555 3334432 3345555544443
No 138
>KOG0115|consensus
Probab=93.83 E-value=0.1 Score=44.18 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=49.5
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLK 215 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~ 215 (282)
..|||.||+..++.+.+...|+.||.|....+.. ..+=++|.|...-.|.+|...++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 6799999999999999999999999998765542 55678999999999999998774
No 139
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.80 E-value=0.14 Score=39.95 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=75.0
Q ss_pred HHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCc
Q psy3994 5 KTFNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVF 83 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~ 83 (282)
.+|+..+...+....+ ..-..|..++...-..-...+..+..+.+.|++.+|...+..|.|+|..++|--..+... +-
T Consensus 4 ~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~e-v~ 82 (140)
T PF00790_consen 4 SSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHRE-VA 82 (140)
T ss_dssp SHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHH-HT
T ss_pred ChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH-Hh
Confidence 3567777777665554 445667777776666656778999999999999999999999999999999974333210 00
Q ss_pred hhhHHHHHHHHHHHhhcCChh--hHHHHHHHHHhhccC
Q psy3994 84 GPRFARNLKATFQHLYQCPPE--DKSKIIRVLNLWQKN 119 (282)
Q Consensus 84 ~~~f~~~l~~~f~~v~~~~~~--~~~k~~~~l~~w~~~ 119 (282)
...|...+.+.+..-.. ++. .+.+++.++..|...
T Consensus 83 ~~~fl~~l~~l~~~~~~-~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 83 SKEFLDELVKLIKSKKT-DPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp SHHHHHHHHHHHHHTTT-HHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCC-CchhHHHHHHHHHHHHHHHH
Confidence 11344444444433332 122 789999999999743
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.39 E-value=0.53 Score=32.27 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=40.3
Q ss_pred EEEec-CCCccCcHHHHHhhhccCCc-----eEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 160 TLWIG-HLSKLVQEEELSDTFGEYGD-----VVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 160 ~l~V~-nl~~~~te~~l~~~f~~~G~-----i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
++|+. +=-..++..+|..++..-+. |-.+.+.. .|+||+-.. +.|..++..|++..+.|++++|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45553 33356788888888877654 45666655 899999875 4789999999999999999999875
No 141
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.29 E-value=0.4 Score=31.69 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=41.2
Q ss_pred cEEEecCCCccCcHHHHHhhhccC---CceEEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEY---GDVVSINLIPPRGCAFVCMNRRQDAAKALYKL 214 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~---G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l 214 (282)
..|+|.|+. +++.++++.+|..| ....++..+.. .-|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 579999985 47778899999998 12456666544 33678999999999999764
No 142
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.14 E-value=0.31 Score=37.58 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchh-hHHHHHHHHHHHhh
Q psy3994 21 ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGP-RFARNLKATFQHLY 99 (282)
Q Consensus 21 ~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~-~f~~~l~~~f~~v~ 99 (282)
..-.-|.+++...-..-...+..+..+.+.|+..+|...+..|.|+|..++|.-..+.. .++. .|...+.+.+..-.
T Consensus 16 ~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~--~i~s~~fl~~l~~l~~~~~ 93 (133)
T cd03561 16 PDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHL--QVADKEFLLELVKIAKNSP 93 (133)
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHH--HHhhHHHHHHHHHHhCCCC
Confidence 44556777777665444577888999999999999999999999999999997332221 0111 22223333332211
Q ss_pred cCChhhHHHHHHHHHhhcc
Q psy3994 100 QCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 100 ~~~~~~~~k~~~~l~~w~~ 118 (282)
..++..+.+++.++..|..
T Consensus 94 ~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 94 KYDPKVREKALELILAWSE 112 (133)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 2467899999999999975
No 143
>KOG1365|consensus
Probab=93.11 E-value=0.078 Score=47.31 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=59.5
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEE---EEEe-----CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVS---INLI-----PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~---~~~~-----~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...|-+.+||...+-++|-++|..|..-.. +.++ ++.|-|||+|.+.+.|..|....+.+...+|-|.|--+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 456888999999999999999998864322 3333 26789999999999999999999988888898888665
Q ss_pred c
Q psy3994 230 P 230 (282)
Q Consensus 230 ~ 230 (282)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 144
>KOG0128|consensus
Probab=93.00 E-value=0.013 Score=57.11 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=53.8
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe------CCCcEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~ 220 (282)
...++||.||+..+.+.+|...|..+|.+..+++. .-||+|++.|...+.+.+|+....+..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 34688999999999999999999999988877665 26899999999999999999865554444
No 145
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.62 E-value=0.39 Score=38.95 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=50.9
Q ss_pred CCcEEEecCCCccCcHHHHHhhhcc-CCce---EEEEEe--C------CCcEEEEEecCHHHHHHHHHHhCCCeeC---C
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGE-YGDV---VSINLI--P------PRGCAFVCMNRRQDAAKALYKLKNTKLQ---G 221 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~-~G~i---~~~~~~--~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~---g 221 (282)
....|.|.+||+++||+++.+.+.. +|.- ..+.-. . .-.-|||.|.+.++...-...++|+.+. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3578999999999999999998887 6655 333311 1 2346899999999999999999998762 2
Q ss_pred --eeEEEEeecCCC
Q psy3994 222 --KTITLAWAPGKG 233 (282)
Q Consensus 222 --~~l~v~~a~~~~ 233 (282)
.+-.|.+|.-+.
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 245778876543
No 146
>KOG2253|consensus
Probab=92.47 E-value=0.13 Score=49.05 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.++.-++||||+...+..+-++.+...+|-|.++.... |||..|..+..+.+|+..++-..++|..+.+.-.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 34557999999999999999999999999998887654 9999999999999999998888888887766553
No 147
>KOG2068|consensus
Probab=92.43 E-value=0.058 Score=47.39 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=59.0
Q ss_pred CcEEEecCCCccCc-HHHHH--hhhccCCceEEEEEeCC---------CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 158 STTLWIGHLSKLVQ-EEELS--DTFGEYGDVVSINLIPP---------RGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 158 ~~~l~V~nl~~~~t-e~~l~--~~f~~~G~i~~~~~~~~---------kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
..-+||-+|+.... +..|+ ..|.+||.|.++.+... ..-++|+|...++|..||...+|..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 46688989987664 44443 46899999999887651 12379999999999999999999999999988
Q ss_pred EEeecCC
Q psy3994 226 LAWAPGK 232 (282)
Q Consensus 226 v~~a~~~ 232 (282)
..++..+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7777643
No 148
>KOG4210|consensus
Probab=92.10 E-value=0.22 Score=43.72 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=78.6
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++.|+|++..++.+.+...++..+|......+.. ++|++.+.|...+.+..|+.........++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3568999999999999998888899998766655442 7899999999999999999854445666666666555
Q ss_pred cCCCCCC---CccccccccCCCeeeecCCCCCcchhhhh-hhcCcccccCCCC
Q psy3994 230 PGKGMKD---KDWKDFWEVQDGVSYIPYDRLSKEIDYDY-LEDGGVFDEDTVP 278 (282)
Q Consensus 230 ~~~~~~~---~~~~~~~~~~~g~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~p 278 (282)
...+.+. ...........++..+.++--.+.++|+. +...|.+-..-+|
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~ 218 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLP 218 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccC
Confidence 5444221 11112222333344444444445667663 3333444333333
No 149
>KOG4307|consensus
Probab=89.86 E-value=0.25 Score=47.46 Aligned_cols=81 Identities=16% Similarity=0.077 Sum_probs=63.7
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEE-EEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVS-INLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~-~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
.......|||..||..+++.++-+.|..-..|++ |.+.. -++-|||.|...+++..|...-+.+.++-+.|+|.
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 3456789999999999999999999988777776 55443 46899999999999988887666666677888997
Q ss_pred eecCCCC
Q psy3994 228 WAPGKGM 234 (282)
Q Consensus 228 ~a~~~~~ 234 (282)
-...+++
T Consensus 510 si~~~~m 516 (944)
T KOG4307|consen 510 SIADYAM 516 (944)
T ss_pred chhhHHH
Confidence 6655443
No 150
>KOG1365|consensus
Probab=89.82 E-value=0.92 Score=40.74 Aligned_cols=64 Identities=23% Similarity=0.317 Sum_probs=46.1
Q ss_pred EEEecCCCccCcHHHHHhhhccC----CceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q psy3994 160 TLWIGHLSKLVQEEELSDTFGEY----GDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTI 224 (282)
Q Consensus 160 ~l~V~nl~~~~te~~l~~~f~~~----G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l 224 (282)
-|-..+||.++++.++.++|.+- |..+.+-+++ ..|-|||.|...+.|+.|+.. |...++-|-|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 45568999999999999999732 2344444442 568999999999999999975 4444444433
No 151
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.28 E-value=4.8 Score=29.92 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=45.1
Q ss_pred CcEEEecCCC-ccCcHHHHHhhhccC-CceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3994 158 STTLWIGHLS-KLVQEEELSDTFGEY-GDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQ 220 (282)
Q Consensus 158 ~~~l~V~nl~-~~~te~~l~~~f~~~-G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~ 220 (282)
++++.+=-.| ..++-++|..+.+.+ ..|..+++.+ ++--+.++|.+.+.|..-...+||..+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3455554444 455556676655555 4577788886 4456889999999999999999999874
No 152
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.17 E-value=2.5 Score=32.98 Aligned_cols=111 Identities=19% Similarity=0.262 Sum_probs=73.9
Q ss_pred HHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCc
Q psy3994 5 KTFNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVF 83 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~ 83 (282)
..|++.+...+..... ..=.-|..++...-..-...+..+.++.+.++.-.|...+-.|-|+|..++|--..+... +-
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e-va 81 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE-VA 81 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH-Hh
Confidence 3566666666553333 445556667776654445678888999999999889999999999999999963322210 00
Q ss_pred hhhHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Q psy3994 84 GPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 84 ~~~f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~ 118 (282)
...|...+...+.. ..++..+.+++.++..|..
T Consensus 82 s~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 82 SREFMDELKDLIKT--TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred hHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHH
Confidence 11344444443332 3567889999999999974
No 153
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.96 E-value=1.8 Score=33.32 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=68.4
Q ss_pred HHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchhh
Q psy3994 8 NQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGPR 86 (282)
Q Consensus 8 ~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~~ 86 (282)
++.+...++...+ ..-..|..++...-..-...+..+..+.+.|+.-+|...+-.|-|+|..++|--..+. ..
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~------~e 75 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFH------LE 75 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHH------HH
Confidence 3444445443333 4555677777766555456788889999999988999999999999999999733332 22
Q ss_pred HHH-HHHHHHHHhhc---CChhhHHHHHHHHHhhcc
Q psy3994 87 FAR-NLKATFQHLYQ---CPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 87 f~~-~l~~~f~~v~~---~~~~~~~k~~~~l~~w~~ 118 (282)
++. .+.+.+..+.. ..+..+.++..++..|..
T Consensus 76 v~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 76 VASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 222 22223333332 123378999999999974
No 154
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.75 E-value=1.9 Score=33.81 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=68.5
Q ss_pred HHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchhh
Q psy3994 8 NQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGPR 86 (282)
Q Consensus 8 ~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~~ 86 (282)
|+.+...+....+ ..=.-|..++-..-..-...+..+.+|.+.++.-+|.-.+-.|-|+|..++|--..+-.. +-...
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vask~ 80 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE-VASRD 80 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HhhHH
Confidence 3344444332322 344556667666555556778888899999998889999999999999999973322210 00012
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccC
Q psy3994 87 FARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119 (282)
Q Consensus 87 f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~~ 119 (282)
|...+.+.+..- .+...+.++..++..|...
T Consensus 81 Fl~eL~kl~~~~--~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 81 FTQELKKLINDR--VHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHhccc--CCHHHHHHHHHHHHHHHHH
Confidence 333333322221 5688999999999999743
No 155
>KOG4660|consensus
Probab=87.37 E-value=1 Score=42.35 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=34.7
Q ss_pred CCcEEEEEecCHHHHHHHHHHhCCCee----CCeeEEEEeecCCC
Q psy3994 193 PRGCAFVCMNRRQDAAKALYKLKNTKL----QGKTITLAWAPGKG 233 (282)
Q Consensus 193 ~kg~aFV~f~~~~~A~~Ai~~l~g~~~----~g~~l~v~~a~~~~ 233 (282)
+.|||||.|.+.+++..+.+++||+.. ..+.+.+.||+-++
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 679999999999999999999999964 34566888888665
No 156
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.69 E-value=4.5 Score=27.08 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=42.9
Q ss_pred cCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q psy3994 169 LVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITL 226 (282)
Q Consensus 169 ~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 226 (282)
.++-++++..+..|+ ...|.. ++.-=||.|.+..+|+++....+|..+.+.++..
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~--d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRD--DRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEe--cCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 456789999999995 344443 3344589999999999999999999888777654
No 157
>KOG4410|consensus
Probab=83.49 E-value=1.6 Score=37.69 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=41.3
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCce-EEEEEeCCCcEEEEEecCHHH
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDV-VSINLIPPRGCAFVCMNRRQD 206 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i-~~~~~~~~kg~aFV~f~~~~~ 206 (282)
...+-||++|||.++.-.+|+..+.+.|.+ .++....++|-||..|.++..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccC
Confidence 445789999999999999999999988764 355555588899999998643
No 158
>KOG2591|consensus
Probab=82.59 E-value=2.2 Score=40.19 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=51.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhcc--CCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCC--eeCCeeE
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGE--YGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT--KLQGKTI 224 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~--~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~--~~~g~~l 224 (282)
..|-+.+.-||.++..++++.+|.. +-.+.+|.+-.+-+ =||+|++..+|+.|.+.|... .+.|++|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 3467788999999999999999975 66788887765433 599999999999998766422 3455544
No 159
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.76 E-value=5.7 Score=30.88 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchhhHHHHHHHHHHHhh--c
Q psy3994 23 KAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLY--Q 100 (282)
Q Consensus 23 ~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~~f~~~l~~~f~~v~--~ 100 (282)
=.-|..++...-..-...+..+..+.+.++.-+|.-.|-.|.++|+.++|--..+... +--..|..++.+.+..-+ .
T Consensus 19 w~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vas~~Fl~el~kl~~~k~~~~ 97 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSE-VGKFRFLNELIKLVSPKYLGS 97 (139)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHH-HHhHHHHHHHHHHhccccCCC
Confidence 3445566665533334556777888888888888889999999999999974333210 111235555555554333 1
Q ss_pred -CChhhHHHHHHHHHhhcc
Q psy3994 101 -CPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 101 -~~~~~~~k~~~~l~~w~~ 118 (282)
.+...+.++..++..|..
T Consensus 98 ~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 98 RTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 467899999999999984
No 160
>KOG2193|consensus
Probab=80.36 E-value=0.076 Score=47.97 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=62.1
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
++.+-+.|+|+...++.|..++..||.++.|..+. ....--|+|.+.+.+..|+..++|..+....++|.|-.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 46688999999999999999999999999886653 22333578999999999999999999999999998764
No 161
>KOG4019|consensus
Probab=74.78 E-value=2.6 Score=33.97 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=56.2
Q ss_pred cEEEecCCCccC-cH----HHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCe-eEEEEeecCC
Q psy3994 159 TTLWIGHLSKLV-QE----EELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGK-TITLAWAPGK 232 (282)
Q Consensus 159 ~~l~V~nl~~~~-te----~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~-~l~v~~a~~~ 232 (282)
+++.+.+++..+ ++ .....+|.+|.+.....+.++.+.--|.|.+.+.|..|...+++..+.|. .++.-+|.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 567777887654 22 23456677777666666666667777899999999999999999999887 8898888754
No 162
>KOG0804|consensus
Probab=72.55 E-value=9.8 Score=35.14 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=54.2
Q ss_pred CcEEEecCCCccCcHHHHHhhhccC-CceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEY-GDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQ 220 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~-G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~ 220 (282)
++.|+|=.+|-.++-.||-.+...+ -.|..+++++ ++=-..|+|.+.++|..--..+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7899999999999999999988776 5678888886 3445689999999999999999999874
No 163
>KOG2891|consensus
Probab=72.44 E-value=2.4 Score=36.54 Aligned_cols=74 Identities=18% Similarity=0.356 Sum_probs=49.2
Q ss_pred cEEEecCCCcc------------CcHHHHHhhhccCCceEEEEEeC----------------CCcEEE---------EEe
Q psy3994 159 TTLWIGHLSKL------------VQEEELSDTFGEYGDVVSINLIP----------------PRGCAF---------VCM 201 (282)
Q Consensus 159 ~~l~V~nl~~~------------~te~~l~~~f~~~G~i~~~~~~~----------------~kg~aF---------V~f 201 (282)
.|||+.+||-. -+++-|+..|+.||.|..+.++. -.||+| |.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57888877732 35678999999999999998873 134433 444
Q ss_pred cCHHHHHHHHHHhCCCee----CCe----eEEEEeecCC
Q psy3994 202 NRRQDAAKALYKLKNTKL----QGK----TITLAWAPGK 232 (282)
Q Consensus 202 ~~~~~A~~Ai~~l~g~~~----~g~----~l~v~~a~~~ 232 (282)
..-..-..|+..|.|..+ .|+ .++|.|.+++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 444455567777777654 222 5677777655
No 164
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.72 E-value=12 Score=24.57 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=16.3
Q ss_pred HHHHhhhccCCceEEEEEe
Q psy3994 173 EELSDTFGEYGDVVSINLI 191 (282)
Q Consensus 173 ~~l~~~f~~~G~i~~~~~~ 191 (282)
.+||++|+..|+|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877665
No 165
>KOG2318|consensus
Probab=64.63 E-value=41 Score=32.29 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=59.6
Q ss_pred CCCCcEEEecCCCcc-CcHHHHHhhhccC----CceEEEEEeC---------------C---------------------
Q psy3994 155 NMCSTTLWIGHLSKL-VQEEELSDTFGEY----GDVVSINLIP---------------P--------------------- 193 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~-~te~~l~~~f~~~----G~i~~~~~~~---------------~--------------------- 193 (282)
...+++|-|-|+.|+ +...+|..+|..| |.|.+|.|.+ +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556789999999975 5778899888877 6899998874 1
Q ss_pred --------C---------cEEEEEecCHHHHHHHHHHhCCCeeC--CeeEEEEee
Q psy3994 194 --------R---------GCAFVCMNRRQDAAKALYKLKNTKLQ--GKTITLAWA 229 (282)
Q Consensus 194 --------k---------g~aFV~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~a 229 (282)
| -||-|+|.+.+.|...-..++|..+. |..+-++|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 27999999999999999999999985 445555554
No 166
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=60.84 E-value=24 Score=27.38 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh-cCCCCccceeehhhHHHHHhhhhccCCCCchhhHHHH-HHHHHHHh
Q psy3994 21 ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIK-CKPEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARN-LKATFQHL 98 (282)
Q Consensus 21 ~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~-~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~~f~~~-l~~~f~~v 98 (282)
..=.-|.+++...-..-...+..+..+.+.++. .+|...+-.|-|+|..++|--..+... +-...|..+ +.+.+..-
T Consensus 17 ~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~e-iask~Fl~e~L~~~i~~~ 95 (141)
T cd03565 17 EDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVL-VAKKDFIKDVLVKLINPK 95 (141)
T ss_pred cCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHH-HHHHHhhhHHHHHHHccc
Confidence 344456666665543334668888888888864 345556778999999999973222210 000123333 33333211
Q ss_pred hcCChhhHHHHHHHHHhhcc
Q psy3994 99 YQCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 99 ~~~~~~~~~k~~~~l~~w~~ 118 (282)
...+...+.++..++..|..
T Consensus 96 ~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 96 NNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 11345778999999999974
No 167
>KOG4676|consensus
Probab=57.40 E-value=1.4 Score=39.67 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=53.5
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP--PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~--~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
.++++|++|+..+...++-++|..+|++....+-. ...++-+.|........|+. ++|..+.-...++..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAI 222 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhh
Confidence 37899999999999999999999999987765542 34566699998888888887 577766543333333
No 168
>KOG4483|consensus
Probab=53.43 E-value=20 Score=32.67 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=45.3
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHH
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYK 213 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~ 213 (282)
-.+.|-|-+.|...-.++|-..|..||. ..++|.+ ...+||-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhhc
Confidence 4578999999998888899999999965 3344443 567899999999999999974
No 169
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=49.79 E-value=22 Score=31.57 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=26.8
Q ss_pred EEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 197 AFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 197 aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
|||+|.+..+|..|.+.+... .++.+++..|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcc
Confidence 799999999999999966554 34566777776553
No 170
>KOG4454|consensus
Probab=49.37 E-value=3.2 Score=34.59 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=51.3
Q ss_pred CCcEEEecC----CCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3994 157 CSTTLWIGH----LSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQ 220 (282)
Q Consensus 157 ~~~~l~V~n----l~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~ 220 (282)
...+++.|+ |....+++.+...|+.-|.+..+++.. ++.++|+.+....+.-.+.....+....
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 346778888 888899999999999999998888774 6789999998877777777776665543
No 171
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=48.67 E-value=13 Score=26.39 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.2
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhc
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFG 180 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~ 180 (282)
...+.++|-|.|||...++++|++.++
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 344578999999999999999997654
No 172
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=46.78 E-value=39 Score=25.59 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=51.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHh
Q psy3994 13 SLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQS 73 (282)
Q Consensus 13 ~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~ 73 (282)
+.++...|-++-...+++.+..++......+++.+-+.+++-+|--|+-.|=+++.+++..
T Consensus 9 ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 9 ATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 3444555688889999999999988888899999999999888777899999999999876
No 173
>KOG1087|consensus
Probab=43.77 E-value=23 Score=33.37 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchhhHHHHHHHHHHHhhcCChh
Q psy3994 25 KITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPPE 104 (282)
Q Consensus 25 ~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~~f~~~l~~~f~~v~~~~~~ 104 (282)
-+.+++.+.-.-....+.+|.+|.+.|+...|.-.+-.|+|+|-.++|--..|-. .+--.+|..++...+..-- .+..
T Consensus 21 ~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~-~Va~k~fL~emVk~~k~~~-~~~~ 98 (470)
T KOG1087|consen 21 LNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHL-QVASKEFLNEMVKRPKNKP-RDLK 98 (470)
T ss_pred HHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHhccccCC-cchh
Confidence 4566666665555666788889999999888888899999999999986222110 0000123333222222110 4567
Q ss_pred hHHHHHHHHHhhcc
Q psy3994 105 DKSKIIRVLNLWQK 118 (282)
Q Consensus 105 ~~~k~~~~l~~w~~ 118 (282)
.+.|++.++..|..
T Consensus 99 Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 99 VREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999999983
No 174
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=41.14 E-value=35 Score=29.84 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=55.0
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCC-------------cEEEEEecCHHHHHH----HHHHhCC--Ce
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR-------------GCAFVCMNRRQDAAK----ALYKLKN--TK 218 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~k-------------g~aFV~f~~~~~A~~----Ai~~l~g--~~ 218 (282)
.|.|...|+...++-..+-..|.+||.|+++.++.+. ....+.|-+++.+-. .++.|.. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999888888999999999999999744 567788988876542 3333332 34
Q ss_pred eCCeeEEEEeec
Q psy3994 219 LQGKTITLAWAP 230 (282)
Q Consensus 219 ~~g~~l~v~~a~ 230 (282)
+....|++.|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 677788887775
No 175
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=39.73 E-value=19 Score=27.10 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=48.4
Q ss_pred HHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HhcCCCCccceeehhhHHHHHh
Q psy3994 6 TFNQELSSLYDTKP-PISKAKITAITRSAIRAIKFYKHVVQSVEKFI---IKCKPEYKVPALYVIDSLVRQS 73 (282)
Q Consensus 6 ~f~~~L~~l~~~~~-p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~---~~~~p~~kl~~lYv~Dsi~r~~ 73 (282)
+.|..+.+-+.+.. +.++.-+.+++....+. +.+..|++.+.+.+ +.-...+++-.|.|++-++++.
T Consensus 3 ~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG 73 (125)
T PF01417_consen 3 ELELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNG 73 (125)
T ss_dssp HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHC
Confidence 45666666655443 36666777777766666 89999999999998 4455577888999999999887
No 176
>KOG0226|consensus
Probab=34.11 E-value=11 Score=32.15 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCCCchhhHHHHHHH-HHHHhhc-CChhhHHHHHHHHHhhccCcccCCccccccccCCCCCCCChhhhHHhhh
Q psy3994 79 DKDVFGPRFARNLKA-TFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQA 149 (282)
Q Consensus 79 ~~~~~~~~f~~~l~~-~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~ 149 (282)
++.+|||+++.++++ .+.-++. .+.-..+++++.-.+....+ +.|+.|.++. ....||+||..
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkg-------ygfVSf~~pa-d~~rAmrem~g 254 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKG-------YGFVSFRDPA-DYVRAMREMNG 254 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhcccccccccccccc-------ceeeeecCHH-HHHHHHHhhcc
Confidence 567999999987664 4555565 67777888888765544444 8899998876 44567776644
No 177
>KOG4008|consensus
Probab=32.43 E-value=28 Score=29.42 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI 191 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~ 191 (282)
......++|+-|+|...|++.|.++.++.|.+..+...
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 34456899999999999999999999999977666544
No 178
>KOG0125|consensus
Probab=30.78 E-value=27 Score=31.03 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=35.9
Q ss_pred hCCCeeCCeeEEEEeecCCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc--CcccccCCC
Q psy3994 214 LKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED--GGVFDEDTV 277 (282)
Q Consensus 214 l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~ 277 (282)
-+|....|..+.+.-......+....+-+ +|+||+.=- +.||+.-++ |.++|+|++
T Consensus 72 ~~~~~t~g~~~~~~~st~s~s~~~pkRLh------VSNIPFrFR--dpDL~aMF~kfG~VldVEII 129 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNSSSKDTPKRLH------VSNIPFRFR--DPDLRAMFEKFGKVLDVEII 129 (376)
T ss_pred cCCCCCCCCccccCCCCcCCCCCCCceeE------eecCCcccc--CccHHHHHHhhCceeeEEEE
Confidence 34555666666666555444333322333 899999877 678888554 889998854
No 179
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.36 E-value=1.8e+02 Score=19.50 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=32.8
Q ss_pred HHHHhhhccCCceEEEEEeCC--CcEEEEEecCHHHHHHHHHHhC
Q psy3994 173 EELSDTFGEYGDVVSINLIPP--RGCAFVCMNRRQDAAKALYKLK 215 (282)
Q Consensus 173 ~~l~~~f~~~G~i~~~~~~~~--kg~aFV~f~~~~~A~~Ai~~l~ 215 (282)
.++.+.+..+| +....+... .++.|+-+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45777778898 566677776 7889999989999888877653
No 180
>KOG1818|consensus
Probab=28.89 E-value=3.3e+02 Score=26.85 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchhhHHHHHHHHHHHhhc---
Q psy3994 24 AKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQ--- 100 (282)
Q Consensus 24 ~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~~f~~~l~~~f~~v~~--- 100 (282)
.-|-.++..+-.-.-..+--++.+.+.+.+++|.-++..+-++|..+++.-+ .++..-+.+...+.|.+++.
T Consensus 27 e~~~e~~d~ir~~~~~~k~slr~~~~~i~h~np~~~~~~~~~~d~cvkn~G~-----gv~~ei~tre~m~~~~~~l~~~~ 101 (634)
T KOG1818|consen 27 EAILEISDMIRSGGVPPKPSLRGIKKRIDHENPNVQLFTLKLTDHCVKNCGH-----GVHCEIATREFMDLLKSLLESQR 101 (634)
T ss_pred hhhhhHHHHHHhcCCCCchhHHHHHHHHhccCCCcccchhhhHHHHHhcCCc-----chhHHHHHHHHHHHHHhhhcccc
Confidence 3455555544433334455566788899999999999999999999998722 34444455566666666665
Q ss_pred CChhhHHHHHHHHHhhcc
Q psy3994 101 CPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 101 ~~~~~~~k~~~~l~~w~~ 118 (282)
..++.+.+++.++..|-.
T Consensus 102 ~~e~v~~~~l~~~q~wa~ 119 (634)
T KOG1818|consen 102 IHEEVKNKILELIQNWAA 119 (634)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 235666777777777763
No 181
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=27.21 E-value=80 Score=26.09 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=54.6
Q ss_pred CChhhHHHHHHHHH-hhccCcccCCccccccccCCCCCCC---ChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHHHHH
Q psy3994 101 CPPEDKSKIIRVLN-LWQKNEVFTPDIIHPLFDMADPNHP---IHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELS 176 (282)
Q Consensus 101 ~~~~~~~k~~~~l~-~w~~~~~f~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~~l~ 176 (282)
..++++..++..++ .+..+..+......+ ......... .....................+++++++..++...+.
T Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (306)
T COG0724 165 ESEESAEKAIEELNGKELEGRPLRVQKAQP-ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELA 243 (306)
T ss_pred cCHHHHHHHHHHcCCCeECCceeEeecccc-ccccccccccccchhhhccccccccccccccceeeccccccccchhHHH
Confidence 46788888888888 555555555544322 000000000 0000000011123444567899999999999999999
Q ss_pred hhhccCCceEEEEEeC
Q psy3994 177 DTFGEYGDVVSINLIP 192 (282)
Q Consensus 177 ~~f~~~G~i~~~~~~~ 192 (282)
..|..+|.+....+..
T Consensus 244 ~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 244 DLFKSRGDIVRASLPP 259 (306)
T ss_pred HhccccccceeeeccC
Confidence 9999999997776664
No 182
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=26.81 E-value=33 Score=25.95 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=18.1
Q ss_pred CcEEEecCCCccCcHHHHHhhhccC-CceEEEEEe
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEY-GDVVSINLI 191 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~-G~i~~~~~~ 191 (282)
...||||++|...........-..| |+|.++.+.
T Consensus 92 ~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~in 126 (131)
T PF00054_consen 92 DGPLYVGGLPSSSSRPRPLPISPGFKGCIRNLSIN 126 (131)
T ss_dssp CSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEET
T ss_pred ccCEEEccCCchhhcccccccCCCeeEEEEEeEEC
Confidence 4569999999322222222222233 677777653
No 183
>COG4815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.94 E-value=86 Score=23.88 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=34.4
Q ss_pred eeCCeeEEEEeecCCCCCCCccccccccCCCeeeecCCCC
Q psy3994 218 KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRL 257 (282)
Q Consensus 218 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~g~~~~p~~~~ 257 (282)
.+.+.+++++.|+.-..+++.+..+|..+.+-.+.|+++-
T Consensus 34 ~~~~et~~~R~arkTptK~G~FVafW~rde~g~n~Pfs~~ 73 (145)
T COG4815 34 QVEGETWHVRTARKTPTKPGAFVAFWQRDEGGQNQPFSDD 73 (145)
T ss_pred EecccEEEEEecccCCCCCceEEEEEEeCCCCCcCCCCcc
Confidence 3467789999999888888889999999999888898875
No 184
>KOG4365|consensus
Probab=22.46 E-value=13 Score=34.32 Aligned_cols=73 Identities=10% Similarity=-0.022 Sum_probs=56.3
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
++..|+..+|-..++.++.-.|.-||.|.-+.+.+ .+..+||+-.. ..|..+|..+.-+.+.|..++|..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 35567778888889999999999999988877654 34567887654 457778877777778888888888764
No 185
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=22.30 E-value=82 Score=23.57 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=22.2
Q ss_pred cHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCH-HHHHHHH
Q psy3994 171 QEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRR-QDAAKAL 211 (282)
Q Consensus 171 te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~-~~A~~Ai 211 (282)
+.++|++.|+.|..+.-.-+-. +.|++.|.|.+. ..-..|+
T Consensus 30 ~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 4578999999997764332221 568999999964 3333444
No 186
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.89 E-value=53 Score=22.01 Aligned_cols=19 Identities=11% Similarity=0.450 Sum_probs=14.7
Q ss_pred CCCcEEEecCCCccCcHHH
Q psy3994 156 MCSTTLWIGHLSKLVQEEE 174 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~ 174 (282)
..++++|+|++|..+-++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HcCceEEECCCChHHHHcC
Confidence 4579999999998775443
No 187
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.68 E-value=1.9e+02 Score=20.47 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=27.2
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEE---eCCCcEEEEEec
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINL---IPPRGCAFVCMN 202 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~---~~~kg~aFV~f~ 202 (282)
.-+|||+++..+.|.-...+.+..+.-.-+-+ ....||+|-+..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 45999999998887655555554432111111 126788887774
No 188
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=20.01 E-value=1e+02 Score=24.14 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=27.8
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCc-eEEEEEeCCCcEEEEE
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGD-VVSINLIPPRGCAFVC 200 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~-i~~~~~~~~kg~aFV~ 200 (282)
+.+.+++|...+ ..||..|...|. -..+..++.+||-|+.
T Consensus 64 ~~v~~~~Ltq~I--~~LRr~L~d~~~~~~~I~TvPrrGyk~~~ 104 (148)
T COG3710 64 RIVTVNTLTQAI--SALRRALRDIGDGHRLIATVPRRGYKFTA 104 (148)
T ss_pred ceEccChHHHHH--HHHHHHHhccCCcceEEEEeCCcceEEec
Confidence 345566654433 679999999986 4557777788998853
Done!