Query psy3994
Match_columns 282
No_of_seqs 312 out of 2668
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 22:39:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9j_A RNA-binding protein 16; 100.0 1.7E-31 5.9E-36 208.8 10.3 134 1-134 1-135 (145)
2 3clj_A Protein NRD1; CTD-inter 100.0 8.2E-31 2.8E-35 204.3 10.3 133 1-134 1-145 (157)
3 1sz9_A PCF11 protein; RNA poly 99.9 1.6E-25 5.4E-30 174.5 5.5 122 3-134 8-135 (144)
4 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-20 5.3E-25 138.3 9.7 82 155-236 13-96 (105)
5 4fxv_A ELAV-like protein 1; RN 99.8 1.3E-20 4.5E-25 138.1 9.4 75 157-231 18-98 (99)
6 2wbr_A GW182, gawky, LD47780P; 99.8 3.3E-20 1.1E-24 130.8 9.6 75 156-230 5-79 (89)
7 3r27_A HnRNP L, heterogeneous 99.8 4.9E-20 1.7E-24 134.3 10.2 79 155-233 18-98 (100)
8 4fu3_A Regulation of nuclear P 99.8 5.4E-21 1.9E-25 148.2 5.4 123 4-134 6-129 (135)
9 4f25_A Polyadenylate-binding p 99.8 8.3E-20 2.8E-24 137.6 9.7 79 157-235 4-86 (115)
10 2cq1_A PTB-like protein L; RRM 99.8 3.8E-19 1.3E-23 130.6 12.7 82 155-236 12-95 (101)
11 1x4d_A Matrin 3; structural ge 99.8 1.2E-19 4E-24 133.4 9.3 78 156-233 13-93 (102)
12 2ad9_A Polypyrimidine tract-bi 99.8 2.1E-19 7.2E-24 135.4 10.0 82 155-236 28-111 (119)
13 2lxi_A RNA-binding protein 10; 99.8 5.5E-20 1.9E-24 132.7 6.3 79 158-236 1-87 (91)
14 1wex_A Hypothetical protein (r 99.8 3.3E-19 1.1E-23 131.7 10.3 81 155-235 12-94 (104)
15 1why_A Hypothetical protein ri 99.8 4.3E-19 1.5E-23 129.4 10.8 79 156-234 15-95 (97)
16 4flb_A Regulation of nuclear P 99.8 1.8E-20 6.2E-25 144.6 2.7 119 5-132 8-126 (132)
17 3s8s_A Histone-lysine N-methyl 99.8 5.7E-19 1.9E-23 131.9 10.3 78 156-233 4-87 (110)
18 2ytc_A PRE-mRNA-splicing facto 99.8 5.2E-19 1.8E-23 125.6 9.5 76 155-230 9-85 (85)
19 2la4_A Nuclear and cytoplasmic 99.8 4.1E-19 1.4E-23 130.5 9.1 78 155-232 24-101 (101)
20 1x4f_A Matrin 3; structural ge 99.8 3.4E-19 1.2E-23 132.8 8.6 79 155-233 22-103 (112)
21 2cpj_A Non-POU domain-containi 99.8 8.2E-19 2.8E-23 128.4 10.3 80 155-234 12-91 (99)
22 2dnq_A RNA-binding protein 4B; 99.8 1.7E-18 5.9E-23 124.4 11.2 79 155-235 5-83 (90)
23 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-18 4.1E-23 126.9 10.4 79 157-235 8-93 (96)
24 3md1_A Nuclear and cytoplasmic 99.8 1.3E-18 4.6E-23 122.9 10.4 76 158-233 1-82 (83)
25 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.4E-18 8.2E-23 126.8 11.9 81 155-235 12-96 (103)
26 2cq3_A RNA-binding protein 9; 99.8 3.6E-18 1.2E-22 125.8 12.8 83 154-236 11-97 (103)
27 4a8x_A RNA-binding protein wit 99.8 1.5E-18 5E-23 124.0 10.3 77 157-233 3-86 (88)
28 1x4g_A Nucleolysin TIAR; struc 99.8 1.5E-18 5.2E-23 129.3 10.6 80 156-235 23-102 (109)
29 2jvo_A Nucleolar protein 3; nu 99.8 1.5E-18 5.1E-23 129.2 10.5 81 153-235 26-106 (108)
30 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-18 4.2E-23 124.2 9.6 76 157-232 5-86 (87)
31 2dnz_A Probable RNA-binding pr 99.8 2.7E-18 9.3E-23 124.5 11.4 79 157-235 4-88 (95)
32 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.3E-18 4.4E-23 123.5 9.4 75 156-230 5-85 (85)
33 2cq0_A Eukaryotic translation 99.8 2.5E-18 8.4E-23 126.7 11.1 81 155-235 12-98 (103)
34 2d9p_A Polyadenylate-binding p 99.8 2.4E-18 8.3E-23 126.8 10.7 82 155-236 12-97 (103)
35 1x5t_A Splicing factor 3B subu 99.8 1.7E-18 5.8E-23 125.9 9.7 80 157-236 4-90 (96)
36 2dgs_A DAZ-associated protein 99.8 4.2E-18 1.4E-22 124.6 11.8 81 154-235 6-92 (99)
37 2do4_A Squamous cell carcinoma 99.8 3.4E-18 1.1E-22 125.3 11.3 80 155-234 14-98 (100)
38 1x4a_A Splicing factor, argini 99.8 3.5E-18 1.2E-22 127.2 11.6 81 155-235 19-102 (109)
39 2x1f_A MRNA 3'-END-processing 99.8 2.4E-18 8.3E-23 125.1 10.3 78 157-234 1-84 (96)
40 2cpf_A RNA binding motif prote 99.8 2.2E-18 7.5E-23 125.8 10.0 80 156-235 3-91 (98)
41 1whw_A Hypothetical protein ri 99.8 4.1E-18 1.4E-22 124.6 11.3 81 155-235 5-91 (99)
42 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-18 6.6E-23 124.5 9.4 80 155-234 5-88 (92)
43 1whx_A Hypothetical protein ri 99.8 7.6E-19 2.6E-23 131.4 7.3 77 157-233 9-85 (111)
44 2cph_A RNA binding motif prote 99.8 4.4E-18 1.5E-22 126.2 11.3 82 154-235 11-100 (107)
45 2dgt_A RNA-binding protein 30; 99.8 4.8E-18 1.6E-22 122.6 11.2 79 155-235 7-85 (92)
46 2dgo_A Cytotoxic granule-assoc 99.8 6.6E-18 2.3E-22 127.0 12.4 82 155-236 12-99 (115)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.1E-18 1.1E-22 125.9 10.1 81 156-236 10-96 (102)
48 2xnq_A Nuclear polyadenylated 99.8 5E-18 1.7E-22 123.8 11.1 78 154-233 18-96 (97)
49 2cpi_A CCR4-NOT transcription 99.8 4.3E-18 1.5E-22 127.3 10.9 79 155-233 12-102 (111)
50 2e5h_A Zinc finger CCHC-type a 99.8 4.2E-18 1.4E-22 123.3 10.6 76 155-230 13-94 (94)
51 2dnh_A Bruno-like 5, RNA bindi 99.8 4.6E-18 1.6E-22 125.7 11.0 80 156-235 13-100 (105)
52 2dnm_A SRP46 splicing factor; 99.8 2.4E-18 8.4E-23 126.8 9.4 81 155-235 10-96 (103)
53 2dnp_A RNA-binding protein 14; 99.8 4.3E-18 1.5E-22 122.3 10.3 79 155-235 6-84 (90)
54 1x4c_A Splicing factor, argini 99.8 7.6E-18 2.6E-22 125.3 11.9 79 156-235 13-96 (108)
55 2lkz_A RNA-binding protein 5; 99.8 2.1E-18 7.2E-23 125.2 8.4 74 158-231 9-94 (95)
56 1oo0_B CG8781-PA, drosophila Y 99.8 2.8E-18 9.7E-23 127.9 9.3 81 154-234 22-108 (110)
57 2cqh_A IGF-II mRNA-binding pro 99.8 1.5E-18 5.2E-23 125.4 7.5 80 156-236 6-87 (93)
58 2err_A Ataxin-2-binding protei 99.8 3.9E-18 1.3E-22 127.1 9.9 81 153-233 24-108 (109)
59 1x5p_A Negative elongation fac 99.8 1.4E-17 4.8E-22 121.3 12.5 79 155-235 12-90 (97)
60 1x5u_A Splicing factor 3B subu 99.8 4.5E-18 1.6E-22 125.7 10.0 81 154-234 11-97 (105)
61 2dgu_A Heterogeneous nuclear r 99.8 8.4E-18 2.9E-22 123.9 11.3 79 156-236 9-87 (103)
62 1p27_B RNA-binding protein 8A; 99.8 2.9E-18 9.8E-23 127.0 8.8 80 154-233 19-104 (106)
63 2jvr_A Nucleolar protein 3; RN 99.7 2.1E-18 7.3E-23 128.7 8.0 77 157-233 27-106 (111)
64 1x5s_A Cold-inducible RNA-bind 99.7 4.2E-18 1.4E-22 125.2 9.4 81 155-235 9-95 (102)
65 1x4h_A RNA-binding protein 28; 99.7 7.8E-18 2.7E-22 125.6 10.9 81 155-235 12-104 (111)
66 2jrs_A RNA-binding protein 39; 99.7 4.6E-18 1.6E-22 126.5 9.5 79 155-233 23-107 (108)
67 2fy1_A RNA-binding motif prote 99.7 8.8E-18 3E-22 126.6 11.1 79 157-235 6-89 (116)
68 2a3j_A U1 small nuclear ribonu 99.7 4E-18 1.4E-22 130.3 9.3 78 156-233 27-111 (127)
69 2cqc_A Arginine/serine-rich sp 99.7 5.6E-18 1.9E-22 122.8 9.3 77 155-231 12-94 (95)
70 2kvi_A Nuclear polyadenylated 99.7 4.3E-18 1.5E-22 123.9 8.6 78 156-235 8-86 (96)
71 2div_A TRNA selenocysteine ass 99.7 6.7E-18 2.3E-22 123.4 9.6 80 155-234 6-96 (99)
72 2do0_A HnRNP M, heterogeneous 99.7 2.3E-17 7.8E-22 123.7 12.7 81 155-235 12-97 (114)
73 2cpz_A CUG triplet repeat RNA- 99.7 9.2E-18 3.1E-22 126.2 10.5 81 155-235 22-108 (115)
74 2cq2_A Hypothetical protein LO 99.7 4.6E-18 1.6E-22 126.8 8.6 77 156-232 23-106 (114)
75 2cpd_A Apobec-1 stimulating pr 99.7 2E-17 6.8E-22 121.0 11.9 78 155-234 12-91 (99)
76 1nu4_A U1A RNA binding domain; 99.7 5.5E-18 1.9E-22 123.4 8.8 78 156-233 6-90 (97)
77 2dgp_A Bruno-like 4, RNA bindi 99.7 6.1E-18 2.1E-22 125.2 9.2 82 154-235 9-99 (106)
78 2ywk_A Putative RNA-binding pr 99.7 6.6E-18 2.3E-22 122.5 9.1 76 156-231 14-94 (95)
79 3ulh_A THO complex subunit 4; 99.7 1.3E-17 4.6E-22 123.6 10.6 78 154-231 25-107 (107)
80 2la6_A RNA-binding protein FUS 99.7 1.1E-17 3.6E-22 122.4 9.7 77 154-230 9-99 (99)
81 2dis_A Unnamed protein product 99.7 6.9E-18 2.3E-22 125.6 8.8 80 156-235 6-95 (109)
82 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-17 4.5E-22 121.5 10.1 78 155-233 16-95 (97)
83 3ns6_A Eukaryotic translation 99.7 2.4E-18 8.4E-23 126.2 6.2 76 157-232 5-93 (100)
84 1wi8_A EIF-4B, eukaryotic tran 99.7 1.6E-17 5.4E-22 122.6 10.6 80 155-236 12-98 (104)
85 1wg1_A KIAA1579 protein, homol 99.7 7.6E-18 2.6E-22 120.6 8.5 76 157-233 4-79 (88)
86 2hvz_A Splicing factor, argini 99.7 4.2E-18 1.4E-22 125.0 7.1 76 159-234 1-77 (101)
87 1wf1_A RNA-binding protein RAL 99.7 1.4E-17 4.7E-22 124.3 9.9 75 157-233 26-101 (110)
88 1s79_A Lupus LA protein; RRM, 99.7 5.4E-18 1.9E-22 125.0 7.6 74 157-231 10-88 (103)
89 2kxn_B Transformer-2 protein h 99.7 9.6E-18 3.3E-22 128.8 9.1 80 154-233 42-127 (129)
90 2cpe_A RNA-binding protein EWS 99.7 1.9E-17 6.5E-22 124.0 10.3 81 155-235 12-106 (113)
91 2khc_A Testis-specific RNP-typ 99.7 1.4E-17 4.7E-22 125.8 9.6 77 154-230 36-118 (118)
92 3tyt_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 135.1 13.3 77 157-233 3-81 (205)
93 2cqd_A RNA-binding region cont 99.7 3.7E-17 1.3E-21 123.1 11.8 80 154-234 13-98 (116)
94 2dhg_A TRNA selenocysteine ass 99.7 9.9E-18 3.4E-22 123.6 8.5 81 156-236 7-94 (104)
95 3p5t_L Cleavage and polyadenyl 99.7 1.7E-18 5.7E-23 124.5 4.2 76 159-234 2-85 (90)
96 2dng_A Eukaryotic translation 99.7 2.4E-17 8.3E-22 121.4 10.5 79 155-235 12-96 (103)
97 2nlw_A Eukaryotic translation 99.7 1.2E-17 4.2E-22 123.5 8.8 78 155-232 12-100 (105)
98 3ex7_B RNA-binding protein 8A; 99.7 1.3E-17 4.5E-22 127.4 9.1 82 154-235 18-105 (126)
99 2i2y_A Fusion protein consists 99.7 1.3E-17 4.4E-22 131.4 9.0 80 154-233 69-149 (150)
100 1u6f_A Tcubp1, RNA-binding pro 99.7 2.6E-17 8.8E-22 127.9 10.5 83 154-236 38-126 (139)
101 3lqv_A PRE-mRNA branch site pr 99.7 2E-17 6.9E-22 124.3 9.6 78 156-233 6-86 (115)
102 1x4e_A RNA binding motif, sing 99.7 4.9E-18 1.7E-22 120.6 5.9 76 156-231 3-84 (85)
103 3ucg_A Polyadenylate-binding p 99.7 2.7E-17 9.1E-22 117.7 9.4 74 158-232 6-85 (89)
104 2rs2_A Musashi-1, RNA-binding 99.7 3.1E-17 1E-21 122.2 10.0 79 156-235 23-107 (109)
105 2kt5_A RNA and export factor-b 99.7 4.9E-17 1.7E-21 123.9 11.3 82 154-235 31-117 (124)
106 2cpx_A Hypothetical protein FL 99.7 3.8E-17 1.3E-21 122.7 10.3 81 156-236 23-109 (115)
107 2dgw_A Probable RNA-binding pr 99.7 6.9E-17 2.4E-21 116.2 10.9 77 155-233 7-88 (91)
108 3zzy_A Polypyrimidine tract-bi 99.7 6.8E-17 2.3E-21 123.2 11.3 77 159-235 29-109 (130)
109 2dh8_A DAZ-associated protein 99.7 1.8E-17 6E-22 122.6 7.9 81 155-236 13-99 (105)
110 3s7r_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 116.5 9.4 74 155-229 8-87 (87)
111 1b7f_A Protein (SXL-lethal pro 99.7 4.3E-17 1.5E-21 130.0 10.5 111 157-275 2-119 (168)
112 2lea_A Serine/arginine-rich sp 99.7 1E-17 3.6E-22 129.6 6.7 80 157-236 46-131 (135)
113 2cqp_A RNA-binding protein 12; 99.7 1.5E-17 5.1E-22 121.3 7.1 78 156-233 13-96 (98)
114 2km4_A Regulator of TY1 transp 99.7 2.4E-18 8.3E-23 133.9 3.1 125 1-132 1-129 (142)
115 2kn4_A Immunoglobulin G-bindin 99.7 4.3E-17 1.5E-21 129.4 10.3 81 156-236 68-154 (158)
116 2fc9_A NCL protein; structure 99.7 7.6E-17 2.6E-21 118.3 10.6 80 155-234 12-93 (101)
117 1p1t_A Cleavage stimulation fa 99.7 1.8E-17 6.1E-22 122.2 7.2 78 157-234 7-90 (104)
118 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.6E-17 2.3E-21 128.1 11.0 79 156-234 37-121 (156)
119 1fjc_A Nucleolin RBD2, protein 99.7 3.4E-17 1.1E-21 119.0 8.3 80 156-235 14-94 (96)
120 1fxl_A Paraneoplastic encephal 99.7 6.7E-17 2.3E-21 128.5 10.8 110 158-275 2-118 (167)
121 2krb_A Eukaryotic translation 99.7 1.5E-17 5.1E-22 117.1 6.0 69 158-226 1-80 (81)
122 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.3E-17 1.8E-21 129.9 9.9 83 153-235 67-155 (165)
123 2fc8_A NCL protein; structure 99.7 7.3E-17 2.5E-21 118.5 9.9 82 154-235 11-95 (102)
124 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.3E-17 8E-22 120.9 7.2 77 155-233 16-99 (100)
125 1x5o_A RNA binding motif, sing 99.7 8.5E-17 2.9E-21 120.6 10.4 78 156-233 23-113 (114)
126 3d2w_A TAR DNA-binding protein 99.7 6.9E-17 2.4E-21 115.8 9.4 74 156-233 9-85 (89)
127 2bz2_A Negative elongation fac 99.7 6.5E-17 2.2E-21 122.7 9.5 77 156-234 37-113 (121)
128 2mss_A Protein (musashi1); RNA 99.7 1.9E-17 6.6E-22 114.6 5.6 69 160-229 1-75 (75)
129 3n9u_C Cleavage and polyadenyl 99.7 5.1E-17 1.8E-21 128.7 8.7 76 157-232 54-137 (156)
130 2ek1_A RNA-binding protein 12; 99.7 2.3E-17 7.7E-22 119.6 6.1 75 157-231 14-94 (95)
131 3u1l_A PRE-mRNA-splicing facto 99.7 4.5E-17 1.5E-21 137.0 8.7 80 155-234 131-231 (240)
132 1x4b_A Heterogeneous nuclear r 99.7 9.4E-17 3.2E-21 120.8 9.7 78 157-235 26-109 (116)
133 2ki2_A SS-DNA binding protein 99.7 1.1E-17 3.8E-22 120.1 4.3 75 159-234 2-82 (90)
134 2m2b_A RNA-binding protein 10; 99.7 1.5E-17 5.2E-22 128.0 5.3 79 154-233 19-109 (131)
135 2cqg_A TDP-43, TAR DNA-binding 99.7 1.6E-16 5.6E-21 116.9 10.5 79 155-235 12-96 (103)
136 4f02_A Polyadenylate-binding p 99.7 7.1E-17 2.4E-21 134.5 9.6 114 156-275 13-133 (213)
137 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.5E-17 8.6E-22 114.6 5.8 70 159-229 1-76 (77)
138 2e5i_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 121.1 10.1 76 160-235 27-105 (124)
139 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-16 3.5E-21 124.4 9.8 77 153-229 58-140 (140)
140 2hzc_A Splicing factor U2AF 65 99.7 6.9E-17 2.4E-21 115.0 7.9 71 157-228 5-86 (87)
141 2e5g_A U6 snRNA-specific termi 99.7 1.6E-16 5.4E-21 115.0 9.9 78 157-235 7-85 (94)
142 2cq4_A RNA binding motif prote 99.7 4.6E-17 1.6E-21 122.1 7.3 76 157-233 24-105 (114)
143 2diu_A KIAA0430 protein; struc 99.7 1.3E-16 4.5E-21 113.4 9.0 72 159-234 10-86 (96)
144 1sjr_A Polypyrimidine tract-bi 99.7 1.2E-16 4.1E-21 126.4 9.3 77 158-234 46-126 (164)
145 3egn_A RNA-binding protein 40; 99.7 9.8E-17 3.3E-21 125.3 8.5 80 156-235 43-133 (143)
146 2jwn_A Embryonic polyadenylate 99.7 1.2E-16 4.1E-21 121.7 8.7 75 158-233 36-116 (124)
147 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-16 5E-21 116.7 8.2 79 156-235 15-98 (101)
148 4f02_A Polyadenylate-binding p 99.7 5.2E-17 1.8E-21 135.3 6.2 76 158-233 103-182 (213)
149 3md3_A Nuclear and cytoplasmic 99.7 4E-16 1.4E-20 123.9 10.9 113 159-277 1-119 (166)
150 3md3_A Nuclear and cytoplasmic 99.7 5.9E-16 2E-20 122.9 11.8 115 97-231 45-166 (166)
151 1wg5_A Heterogeneous nuclear r 99.7 3.2E-16 1.1E-20 115.7 9.5 77 156-233 13-95 (104)
152 3beg_B Splicing factor, argini 99.7 1.7E-16 5.9E-21 119.3 8.0 76 157-233 15-95 (115)
153 2cpy_A RNA-binding protein 12; 99.7 2.1E-16 7.1E-21 118.6 8.2 77 156-233 13-95 (114)
154 2e44_A Insulin-like growth fac 99.7 3E-16 1E-20 113.9 8.7 77 157-233 14-93 (96)
155 1wez_A HnRNP H', FTP-3, hetero 99.6 4E-16 1.4E-20 114.7 8.6 77 156-234 13-94 (102)
156 1wf0_A TDP-43, TAR DNA-binding 99.6 2.2E-16 7.4E-21 112.9 7.0 75 157-235 4-81 (88)
157 2g4b_A Splicing factor U2AF 65 99.6 4.2E-16 1.4E-20 124.8 9.4 111 157-276 3-125 (172)
158 2db1_A Heterogeneous nuclear r 99.6 2.5E-16 8.6E-21 118.9 7.5 75 157-232 16-98 (118)
159 1l3k_A Heterogeneous nuclear r 99.6 2.9E-16 9.8E-21 128.4 8.4 119 156-277 11-136 (196)
160 2lcw_A RNA-binding protein FUS 99.4 1.4E-17 4.9E-22 125.4 0.0 79 157-235 6-98 (116)
161 3sde_A Paraspeckle component 1 99.6 8.8E-16 3E-20 131.8 10.9 108 156-277 20-128 (261)
162 1wel_A RNA-binding protein 12; 99.6 1.2E-16 4.2E-21 121.7 4.9 77 155-232 22-104 (124)
163 1iqt_A AUF1, heterogeneous nuc 99.6 1E-16 3.5E-21 110.9 4.0 69 160-229 1-75 (75)
164 2hgl_A HNRPF protein, heteroge 99.6 2.6E-16 9E-21 121.6 6.6 75 157-232 43-125 (136)
165 2f3j_A RNA and export factor b 99.6 8.6E-16 3E-20 124.2 9.0 80 154-233 84-168 (177)
166 2xs2_A Deleted in azoospermia- 99.6 2.1E-16 7E-21 116.1 4.7 75 157-233 8-87 (102)
167 2adc_A Polypyrimidine tract-bi 99.6 1.8E-15 6.3E-20 127.3 11.0 78 155-232 31-110 (229)
168 2lmi_A GRSF-1, G-rich sequence 99.6 3.4E-16 1.2E-20 116.1 5.7 76 156-232 9-92 (107)
169 2dnn_A RNA-binding protein 12; 99.6 9.6E-16 3.3E-20 113.9 8.1 73 158-232 16-93 (109)
170 3q2s_C Cleavage and polyadenyl 99.6 5E-16 1.7E-20 130.7 6.8 75 157-231 67-149 (229)
171 1qm9_A Polypyrimidine tract-bi 99.6 2.2E-15 7.5E-20 123.6 10.4 76 157-232 2-79 (198)
172 3nmr_A Cugbp ELAV-like family 99.6 2E-15 6.8E-20 121.0 9.3 114 157-277 2-127 (175)
173 2cjk_A Nuclear polyadenylated 99.6 8.7E-16 3E-20 122.3 6.4 111 157-277 2-119 (167)
174 2yh0_A Splicing factor U2AF 65 99.6 3.8E-15 1.3E-19 121.9 10.2 79 156-234 112-196 (198)
175 2adc_A Polypyrimidine tract-bi 99.6 4.7E-15 1.6E-19 124.8 10.9 78 155-232 148-228 (229)
176 3nmr_A Cugbp ELAV-like family 99.6 6.7E-15 2.3E-19 117.9 11.4 74 157-230 94-175 (175)
177 2yh0_A Splicing factor U2AF 65 99.6 4.8E-15 1.7E-19 121.3 10.7 75 157-232 3-88 (198)
178 1fje_B Nucleolin RBD12, protei 99.6 4.1E-15 1.4E-19 119.4 10.0 75 157-232 98-174 (175)
179 1b7f_A Protein (SXL-lethal pro 99.6 8.2E-15 2.8E-19 116.7 11.6 110 98-229 50-168 (168)
180 1qm9_A Polypyrimidine tract-bi 99.6 4.2E-15 1.4E-19 121.9 10.1 77 156-232 118-197 (198)
181 2hgn_A Heterogeneous nuclear r 99.6 6.5E-16 2.2E-20 119.8 4.7 78 156-235 44-126 (139)
182 3smz_A Protein raver-1, ribonu 99.6 5.7E-15 1.9E-19 128.0 11.0 151 95-277 59-217 (284)
183 1l3k_A Heterogeneous nuclear r 99.6 2E-15 6.9E-20 123.3 7.6 79 156-235 102-186 (196)
184 3pgw_S U1-70K; protein-RNA com 99.6 5.3E-15 1.8E-19 135.7 11.0 77 157-233 101-183 (437)
185 2g4b_A Splicing factor U2AF 65 99.6 5.2E-15 1.8E-19 118.3 9.6 74 157-230 93-172 (172)
186 2qfj_A FBP-interacting repress 99.6 6.3E-15 2.1E-19 122.2 10.2 79 157-235 124-208 (216)
187 2qfj_A FBP-interacting repress 99.6 4.6E-15 1.6E-19 123.0 8.6 118 158-277 28-157 (216)
188 1fxl_A Paraneoplastic encephal 99.6 1.3E-14 4.3E-19 115.3 10.6 110 98-229 49-167 (167)
189 2cjk_A Nuclear polyadenylated 99.6 3.3E-15 1.1E-19 118.9 7.0 74 158-232 87-166 (167)
190 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-14 4E-19 125.8 10.9 77 154-230 203-281 (282)
191 2pe8_A Splicing factor 45; RRM 99.6 1.9E-14 6.5E-19 106.2 10.3 77 156-232 6-94 (105)
192 2ghp_A U4/U6 snRNA-associated 99.6 1E-14 3.5E-19 126.8 10.2 120 158-278 117-244 (292)
193 2dit_A HIV TAT specific factor 99.6 2.9E-14 9.9E-19 106.5 11.0 79 155-233 12-103 (112)
194 2hgm_A HNRPF protein, heteroge 99.6 6.2E-15 2.1E-19 112.2 7.4 75 156-232 40-121 (126)
195 3pgw_A U1-A; protein-RNA compl 99.6 1.7E-14 5.8E-19 124.8 11.0 78 156-233 7-91 (282)
196 2dha_A FLJ20171 protein; RRM d 99.6 3E-15 1E-19 113.7 5.2 75 157-232 22-105 (123)
197 2dnl_A Cytoplasmic polyadenyla 99.6 8.7E-15 3E-19 109.7 7.7 74 156-232 6-88 (114)
198 3smz_A Protein raver-1, ribonu 99.5 2.2E-14 7.6E-19 124.2 10.9 79 156-234 182-266 (284)
199 1fje_B Nucleolin RBD12, protei 99.5 2.9E-14 1E-18 114.4 10.8 106 156-268 11-121 (175)
200 2ghp_A U4/U6 snRNA-associated 99.5 2.1E-14 7.3E-19 124.8 10.2 78 154-232 206-291 (292)
201 2j8a_A Histone-lysine N-methyl 99.5 8.5E-15 2.9E-19 110.0 6.3 73 159-231 3-95 (136)
202 2voo_A Lupus LA protein; RNA-b 99.5 2.4E-14 8.1E-19 117.4 8.7 74 158-232 109-187 (193)
203 3tht_A Alkylated DNA repair pr 99.5 9.9E-14 3.4E-18 122.7 9.4 76 155-230 15-97 (345)
204 3tyt_A Heterogeneous nuclear r 99.5 6.9E-14 2.4E-18 115.7 7.2 75 155-229 120-204 (205)
205 3v4m_A Splicing factor U2AF 65 99.5 3.1E-13 1.1E-17 99.6 9.7 77 156-232 3-97 (105)
206 2d9o_A DNAJ (HSP40) homolog, s 99.4 8E-13 2.7E-17 96.4 10.6 65 168-234 27-92 (100)
207 1jmt_A Splicing factor U2AF 35 99.4 8.8E-14 3E-18 102.4 4.7 68 162-229 19-103 (104)
208 3sde_A Paraspeckle component 1 99.4 3.2E-13 1.1E-17 115.7 8.2 76 158-233 96-180 (261)
209 3s6e_A RNA-binding protein 39; 99.4 2.8E-12 9.6E-17 95.8 10.0 77 156-232 5-93 (114)
210 3ue2_A Poly(U)-binding-splicin 99.4 2.6E-12 8.7E-17 96.6 9.3 75 157-231 19-108 (118)
211 2dnr_A Synaptojanin-1; RRM dom 99.3 2.2E-11 7.5E-16 85.8 9.4 76 156-234 5-88 (91)
212 1owx_A Lupus LA protein, SS-B, 99.2 1.2E-10 4.2E-15 87.1 8.6 77 156-232 16-96 (121)
213 1ufw_A Synaptojanin 2; RNP dom 99.0 3.6E-10 1.2E-14 79.9 6.6 71 157-230 14-93 (95)
214 3dxb_A Thioredoxin N-terminall 98.8 7.2E-09 2.5E-13 86.3 7.4 61 171-231 142-212 (222)
215 2l9w_A U4/U6 snRNA-associated- 98.7 1.4E-07 4.6E-12 68.1 8.9 72 158-229 21-97 (117)
216 1wey_A Calcipressin 1; structu 98.0 1.9E-05 6.4E-10 56.7 7.9 75 158-232 5-84 (104)
217 2dhx_A Poly (ADP-ribose) polym 97.5 0.0012 4.2E-08 47.1 10.3 74 157-233 7-85 (104)
218 1wwh_A Nucleoporin 35, nucleop 97.2 0.0026 8.8E-08 46.8 9.1 71 158-230 24-95 (119)
219 1whv_A Poly(A)-specific ribonu 97.0 0.0031 1E-07 44.5 7.8 55 158-215 16-70 (100)
220 1uw4_A UPF3X; nonsense mediate 97.0 0.0061 2.1E-07 42.7 8.9 61 159-219 2-70 (91)
221 2i2y_A Fusion protein consists 96.9 0.00055 1.9E-08 52.7 3.6 39 193-232 12-51 (150)
222 3ctr_A Poly(A)-specific ribonu 96.6 0.0037 1.3E-07 44.2 5.1 54 159-215 7-60 (101)
223 2kn4_A Immunoglobulin G-bindin 96.5 0.0021 7.1E-08 49.8 3.8 25 193-217 12-36 (158)
224 3p3d_A Nucleoporin 53; structu 96.3 0.0045 1.5E-07 46.2 4.5 71 159-231 8-98 (132)
225 2l08_A Regulator of nonsense t 95.5 0.061 2.1E-06 37.9 7.3 62 158-219 9-78 (97)
226 3pq1_A Poly(A) RNA polymerase; 95.5 0.0072 2.5E-07 55.1 3.1 54 158-212 53-107 (464)
227 4f25_A Polyadenylate-binding p 91.7 0.029 9.8E-07 40.9 -0.3 66 95-174 47-113 (115)
228 1x5b_A Signal transducing adap 89.1 0.7 2.4E-05 35.9 5.6 109 6-118 15-125 (163)
229 3d45_A Poly(A)-specific ribonu 88.5 1.1 3.8E-05 41.3 7.5 56 158-216 440-495 (507)
230 3zyq_A Hepatocyte growth facto 88.2 0.67 2.3E-05 38.0 5.3 111 5-118 7-118 (226)
231 1mhq_A ADP-ribosylation factor 87.6 1.2 4E-05 34.0 5.9 111 7-118 2-116 (148)
232 1juq_A ADP-ribosylation factor 86.3 0.85 2.9E-05 35.7 4.6 111 7-118 14-128 (171)
233 3g2s_A C-terminal fragment of 84.3 1.3 4.3E-05 33.8 4.6 112 6-118 11-126 (149)
234 1elk_A Target of MYB1; superhe 84.2 2 6.9E-05 33.0 5.8 112 6-118 16-130 (157)
235 3ldz_A STAM-1, signal transduc 84.1 1 3.5E-05 33.9 4.0 108 7-118 6-114 (140)
236 1dvp_A HRS, hepatocyte growth 78.9 2.8 9.5E-05 34.0 5.1 109 7-118 6-115 (220)
237 2lea_A Serine/arginine-rich sp 77.7 0.59 2E-05 34.8 0.6 72 195-277 5-79 (135)
238 3rru_A TOM1L1 protein; structu 74.2 3.7 0.00013 31.3 4.3 113 5-118 15-130 (152)
239 2g0c_A ATP-dependent RNA helic 73.5 8.6 0.0003 25.1 5.6 68 160-230 2-75 (76)
240 4eyt_A Telomerase associated p 47.9 63 0.0022 22.0 8.1 56 157-214 11-66 (129)
241 3ts2_A Protein LIN-28 homolog 23.8 20 0.00068 27.0 0.4 28 173-202 2-29 (148)
242 3lf9_A 4E10_D0_1IS1A_001_C (T1 23.4 1.7E+02 0.0059 21.0 5.3 46 3-49 16-61 (121)
243 1vdy_A Hypothetical protein (R 23.1 32 0.0011 25.6 1.5 56 18-73 24-80 (140)
244 3fry_A Probable copper-exporti 23.0 1.4E+02 0.0047 18.3 5.6 55 158-213 6-60 (73)
245 1mof_A Moloney murine leukemia 20.3 1.5E+02 0.0052 18.1 3.8 35 1-43 1-35 (55)
No 1
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.97 E-value=1.7e-31 Score=208.78 Aligned_cols=134 Identities=75% Similarity=1.200 Sum_probs=126.4
Q ss_pred CchhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhcc-C
Q psy3994 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQ-D 79 (282)
Q Consensus 1 m~~~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~-~ 79 (282)
|+++++|++.|++|.++++|+|+++|++||.||++|++++++||+.|+++|++|+|.+||++|||+|||+|+++++.+ +
T Consensus 1 m~~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~ 80 (145)
T 3d9j_A 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQE 80 (145)
T ss_dssp -CHHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCc
Confidence 999999999999999999779999999999999999999999999999999999999999999999999999999875 4
Q ss_pred CCCchhhHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccCcccCCccccccccCC
Q psy3994 80 KDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMA 134 (282)
Q Consensus 80 ~~~~~~~f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~~ 134 (282)
.+.|++.|+..|.++|..++.+++..+.++.+++++|+++++|+++.++.+.+..
T Consensus 81 ~~~f~~~F~~~L~~~f~~~~~~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l 135 (145)
T 3d9j_A 81 KDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMA 135 (145)
T ss_dssp TCSHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 5689999999999999999998899999999999999999999999998887643
No 2
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.2e-31 Score=204.33 Aligned_cols=133 Identities=20% Similarity=0.369 Sum_probs=118.8
Q ss_pred CchhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccC-
Q psy3994 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQD- 79 (282)
Q Consensus 1 m~~~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~- 79 (282)
|+ +++|++.|++|.++++++|++||.+||.+|++|+++|+++|+.++++|++|+|+|||++|||+|||+|+++++.+.
T Consensus 1 Ms-v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~ 79 (157)
T 3clj_A 1 MD-FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSN 79 (157)
T ss_dssp CC-HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhc
Confidence 88 9999999999999995699999999999999999999999999999999999999999999999999999887621
Q ss_pred -------CCCchh---hHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccCcccCCccccccccCC
Q psy3994 80 -------KDVFGP---RFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMA 134 (282)
Q Consensus 80 -------~~~~~~---~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~~ 134 (282)
.+.|+. ++...+..+|..++. ++++++.|+.+++++|+++++|++++++++.+..
T Consensus 80 g~~~~a~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~ 145 (157)
T 3clj_A 80 SNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKC 145 (157)
T ss_dssp CC----STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHH
T ss_pred CCccCCCCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHh
Confidence 134653 555566777788787 8999999999999999999999999999987643
No 3
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.91 E-value=1.6e-25 Score=174.52 Aligned_cols=122 Identities=26% Similarity=0.442 Sum_probs=112.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCC
Q psy3994 3 VIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDV 82 (282)
Q Consensus 3 ~~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~ 82 (282)
++++|.+.|++|. .+|+++|++||.||++|++++++||++|+++|++|+|.+||+.|||+|||+||. ...
T Consensus 8 ~~~~f~~~L~~L~----~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~------g~~ 77 (144)
T 1sz9_A 8 IVKDFNSILEELT----FNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNV------GSP 77 (144)
T ss_dssp HHHHHHHHHTTCS----SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------CTT
T ss_pred HHHHHHHHHHHhc----cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhc------cch
Confidence 5889999999883 279999999999999999999999999999999999999999999999999998 456
Q ss_pred chhhHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccC-----cccCCccccccccCC
Q psy3994 83 FGPRFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKN-----EVFTPDIIHPLFDMA 134 (282)
Q Consensus 83 ~~~~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~-----~~f~~~~i~~~~~~~ 134 (282)
|.+.|++++.++|.++|. +++..+.++.+++++|..+ ++|+.+.++++..+-
T Consensus 78 y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l 135 (144)
T 1sz9_A 78 YTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFL 135 (144)
T ss_dssp HHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHH
Confidence 999999999999999998 8999999999999999999 999999888876643
No 4
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=138.30 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=75.7
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC--CeeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN--TKLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~a~~~ 232 (282)
..++++|||+|||+++|+++|+++|++||.|.++++++.||||||+|.+.++|+.|++.|++ ..+.|++|+|.||+++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 34579999999999999999999999999999999999999999999999999999998864 7899999999999988
Q ss_pred CCCC
Q psy3994 233 GMKD 236 (282)
Q Consensus 233 ~~~~ 236 (282)
..+.
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6554
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=138.14 Aligned_cols=75 Identities=32% Similarity=0.458 Sum_probs=71.0
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
.+++|||+|||+++|+++|+++|++||.|.++++++ ++|||||+|.+.++|++|++.|||..+.|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 468999999999999999999999999999999874 57899999999999999999999999999999999997
Q ss_pred C
Q psy3994 231 G 231 (282)
Q Consensus 231 ~ 231 (282)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 6
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.3e-20 Score=130.75 Aligned_cols=75 Identities=24% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..+..||||||++.+||++|+++|.+||+|.++.+..+||||||+|.+.++|.+|++.|||..+.|++|+|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999993
No 7
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=134.30 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=73.9
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCe--eCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTK--LQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~--~~g~~l~v~~a~~~ 232 (282)
..++++|||+|||+.+|+++|+++|++||.|.+++++++||||||+|.+.++|.+|+..|+|.. +.|++|+|.|++++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 3467999999999999999999999999999999999999999999999999999999999885 78999999999876
Q ss_pred C
Q psy3994 233 G 233 (282)
Q Consensus 233 ~ 233 (282)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=99.82 E-value=5.4e-21 Score=148.17 Aligned_cols=123 Identities=21% Similarity=0.334 Sum_probs=111.2
Q ss_pred hHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCc
Q psy3994 4 IKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVF 83 (282)
Q Consensus 4 ~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~ 83 (282)
-..|++.|++|..++ .+|++++.||++|.++++++|++|+++++++++.+||+.|||+|+|+++++++.. .|
T Consensus 6 ~~~l~~~L~~L~~s~-----~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~---~y 77 (135)
T 4fu3_A 6 ESALEKKLSELSNSQ-----QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGP---EF 77 (135)
T ss_dssp HHHHHHHHHHCCSST-----THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCS---HH
T ss_pred HHHHHHHHHHccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCH---HH
Confidence 467999999996554 4999999999999999999999999999999999999999999999999976643 49
Q ss_pred hhhHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccCcccCCccccccccCC
Q psy3994 84 GPRFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMA 134 (282)
Q Consensus 84 ~~~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~~~ 134 (282)
...|.+.|...|.+++. ++++.+.++.+++++|..+++|+++.+..+...-
T Consensus 78 ~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l 129 (135)
T 4fu3_A 78 TREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSM 129 (135)
T ss_dssp HHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 99999999999999987 7788999999999999999999999988876643
No 9
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=8.3e-20 Score=137.59 Aligned_cols=79 Identities=22% Similarity=0.449 Sum_probs=72.8
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.+++|||||||+++|+++|+++|++||.|.+++++. +||||||+|.+.++|++|++.|||..+.|++|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 367899999999999999999999999999999985 5799999999999999999999999999999999999877
Q ss_pred CCC
Q psy3994 233 GMK 235 (282)
Q Consensus 233 ~~~ 235 (282)
..+
T Consensus 84 ~~~ 86 (115)
T 4f25_A 84 KER 86 (115)
T ss_dssp CC-
T ss_pred ccc
Confidence 544
No 10
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-19 Score=130.60 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=75.2
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh--CCCeeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL--KNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l--~g~~~~g~~l~v~~a~~~ 232 (282)
..++++|||+|||+.+++++|+++|++||.|.++.+++.||||||+|.+.++|+.|+..| ++..+.|++|+|.||+++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 346789999999999999999999999999999999999999999999999999999987 467899999999999987
Q ss_pred CCCC
Q psy3994 233 GMKD 236 (282)
Q Consensus 233 ~~~~ 236 (282)
..+.
T Consensus 92 ~~~~ 95 (101)
T 2cq1_A 92 ELKT 95 (101)
T ss_dssp SCCC
T ss_pred cCcC
Confidence 6543
No 11
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=133.36 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=72.7
Q ss_pred CCCcEEEecCCCc-cCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCC--eeCCeeEEEEeecCC
Q psy3994 156 MCSTTLWIGHLSK-LVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT--KLQGKTITLAWAPGK 232 (282)
Q Consensus 156 ~~~~~l~V~nl~~-~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v~~a~~~ 232 (282)
.++++|||+|||+ .+|+++|+++|++||.|.++.+++.+|||||+|.+.++|+.|+..||+. .+.|++|+|.||+..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3579999999999 9999999999999999999999999999999999999999999999865 599999999999865
Q ss_pred C
Q psy3994 233 G 233 (282)
Q Consensus 233 ~ 233 (282)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 12
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=135.41 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=75.7
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC--CeeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN--TKLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~a~~~ 232 (282)
..++++|||+|||+++|+++|+++|++||.|.++++++.||||||+|.+.++|++|+..|++ ..+.|++|+|.||+++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 34579999999999999999999999999999999999999999999999999999999874 6899999999999988
Q ss_pred CCCC
Q psy3994 233 GMKD 236 (282)
Q Consensus 233 ~~~~ 236 (282)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 7654
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-20 Score=132.71 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=71.2
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCC-ceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhC-CCeeCCeeEEEEee
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYG-DVVSINLIP------PRGCAFVCMNRRQDAAKALYKLK-NTKLQGKTITLAWA 229 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G-~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~-g~~~~g~~l~v~~a 229 (282)
+++|||+|||+++|+++|+++|++|| .|.++++++ +||||||+|.+.++|++|++.++ +..++|++|+|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 899998874 68999999999999999999874 56799999999999
Q ss_pred cCCCCCC
Q psy3994 230 PGKGMKD 236 (282)
Q Consensus 230 ~~~~~~~ 236 (282)
.++....
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 9876443
No 14
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=131.67 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=74.2
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCC--eeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT--KLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v~~a~~~ 232 (282)
..++++|||+|||+.+++++|+++|++||.|.++.+++.||||||+|.+.++|.+|+..|++. .+.|++|+|.|++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 345799999999999999999999999999999999999999999999999999999998765 489999999999987
Q ss_pred CCC
Q psy3994 233 GMK 235 (282)
Q Consensus 233 ~~~ 235 (282)
..+
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 544
No 15
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=129.42 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=75.0
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeC--CeeEEEEeecCCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ--GKTITLAWAPGKG 233 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~--g~~l~v~~a~~~~ 233 (282)
.++++|||+|||.++++++|+++|++||.|.++.+...+|||||+|.+.++|++|+..|||..+. |++|+|.||+++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999 9999999999875
Q ss_pred C
Q psy3994 234 M 234 (282)
Q Consensus 234 ~ 234 (282)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.8e-20 Score=144.59 Aligned_cols=119 Identities=14% Similarity=0.318 Sum_probs=102.2
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCch
Q psy3994 5 KTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFG 84 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~ 84 (282)
++|+..|+.|+ .|+.+|++++.||++|.++++++|++|+++|++++|.+||+.|||+|+|++++++++.. .|.
T Consensus 8 ~~l~~~L~~L~-----~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~--~f~ 80 (132)
T 4flb_A 8 SSLDRKFQSVT-----NTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAI--IFR 80 (132)
T ss_dssp HHHHHHHHHCC-----SSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCT--HHH
T ss_pred HHHHHHHHHCc-----ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChH--HHH
Confidence 56777777773 57779999999999999999999999999999999999999999999999999777654 477
Q ss_pred hhHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccCcccCCcccccccc
Q psy3994 85 PRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFD 132 (282)
Q Consensus 85 ~~f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~ 132 (282)
..|.+.+.++|..+. +++.+.++.+++++|..+++|+++.+..+..
T Consensus 81 ~~f~~~l~~~~~~~~--~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~ 126 (132)
T 4flb_A 81 ESFADVLPEAAALVK--DPSVSKSVERIFKIWEDRNVYPEEMIVALRE 126 (132)
T ss_dssp HHHHTTHHHHHHTTC--STTTHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhccCCCcCHHHHHHHHH
Confidence 777777777666554 5889999999999999999999998877654
No 17
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=131.87 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=72.6
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
++.++|||+|||+++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|++.|||..+.|+.|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999999999873 6799999999999999999999999999999999999
Q ss_pred cCCC
Q psy3994 230 PGKG 233 (282)
Q Consensus 230 ~~~~ 233 (282)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7553
No 18
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=125.64 Aligned_cols=76 Identities=26% Similarity=0.559 Sum_probs=72.3
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeec
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL-KNTKLQGKTITLAWAP 230 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~a~ 230 (282)
....++|||+|||.++++++|+++|++||.|.++.+.+++|||||+|.+.++|++|+..| +|..+.|++|+|+||+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345689999999999999999999999999999999999999999999999999999999 9999999999999985
No 19
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.1e-19 Score=130.49 Aligned_cols=78 Identities=24% Similarity=0.543 Sum_probs=74.1
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
...+++|||||||.++++++|+++|++||.|.++++.+++|||||+|.+.++|++|+..|||..+.|++|+|.||+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999864
No 20
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-19 Score=132.80 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=72.9
Q ss_pred CCCCcEEEecCCCcc-CcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC--CeeCCeeEEEEeecC
Q psy3994 155 NMCSTTLWIGHLSKL-VQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN--TKLQGKTITLAWAPG 231 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~-~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g--~~~~g~~l~v~~a~~ 231 (282)
..++++|||+|||++ +++++|+++|++||.|.++.++++||||||+|.+.++|+.|+..||+ ..+.|++|+|.||+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 345799999999998 99999999999999999999999999999999999999999998864 568999999999987
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
+.
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 21
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-19 Score=128.41 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=75.6
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
..+.++|||+|||+.+++++|+++|++||.|..+.+.+++|||||+|.+.++|++|+..|||..+.|++|+|.|++++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999988753
No 22
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=124.41 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=73.8
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
..+.++|||+|||.++++++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|||..+.|++|+|.|++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 3457999999999999999999999999999999998 69999999999999999999999999999999999998764
Q ss_pred C
Q psy3994 235 K 235 (282)
Q Consensus 235 ~ 235 (282)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=126.89 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=73.7
Q ss_pred CCcEEEecCCCccCcHHHHH----hhhccCCceEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 157 CSTTLWIGHLSKLVQEEELS----DTFGEYGDVVSINLIPP---RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~----~~f~~~G~i~~~~~~~~---kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
..++|||+|||.++++++|+ ++|++||.|.+++++.. +|||||+|.+.++|++|+..|||..+.|++|+|.||
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46899999999999999999 99999999999999854 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy3994 230 PGKGMK 235 (282)
Q Consensus 230 ~~~~~~ 235 (282)
+++..+
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 877543
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.3e-18 Score=122.88 Aligned_cols=76 Identities=25% Similarity=0.528 Sum_probs=71.5
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
+.+|||+|||.++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.||++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999985 389999999999999999999999999999999999987
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 25
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=126.79 Aligned_cols=81 Identities=28% Similarity=0.434 Sum_probs=75.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
....++|||+|||+.+++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34579999999999999999999999999999999986 67999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 87644
No 26
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=125.82 Aligned_cols=83 Identities=23% Similarity=0.470 Sum_probs=76.2
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.....++|||+|||.++++++|+++|++||.|..++++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 344579999999999999999999999999999999986 4899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy3994 230 PGKGMKD 236 (282)
Q Consensus 230 ~~~~~~~ 236 (282)
.++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9886543
No 27
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=124.02 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=72.3
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.+++|||+|||.++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999863 6799999999999999999999999999999999999
Q ss_pred cCCC
Q psy3994 230 PGKG 233 (282)
Q Consensus 230 ~~~~ 233 (282)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 28
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=129.28 Aligned_cols=80 Identities=20% Similarity=0.469 Sum_probs=75.7
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMK 235 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 235 (282)
...++|||+|||..+++++|+++|++||.|.++++...+|||||+|.+.++|++|+..|||..+.|++|+|.|++++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999987643
No 29
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.5e-18 Score=129.19 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=73.5
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.....+++|||||||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|||..+.|++|+|.|++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 334567999999999999999999999999999999998 799999999999999999999999999999999999987
Q ss_pred CCC
Q psy3994 233 GMK 235 (282)
Q Consensus 233 ~~~ 235 (282)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 644
No 30
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=124.23 Aligned_cols=76 Identities=22% Similarity=0.490 Sum_probs=70.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
+.++|||+|||.++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.||+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 468999999999999999999999999999999975 47999999999999999999999999999999999998
Q ss_pred CC
Q psy3994 231 GK 232 (282)
Q Consensus 231 ~~ 232 (282)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=124.52 Aligned_cols=79 Identities=23% Similarity=0.412 Sum_probs=74.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
++++|||+|||..+++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|+..|||..+.|++|+|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 568999999999999999999999999999999986 47899999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87644
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.3e-18 Score=123.54 Aligned_cols=75 Identities=31% Similarity=0.505 Sum_probs=70.6
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.+.++|||+|||+++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4579999999999999999999999999999999864 5899999999999999999999999999999999998
Q ss_pred c
Q psy3994 230 P 230 (282)
Q Consensus 230 ~ 230 (282)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=126.75 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=74.9
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||.++++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44579999999999999999999999999999999985 468999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9987644
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=126.77 Aligned_cols=82 Identities=22% Similarity=0.458 Sum_probs=75.7
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
....++|||+|||+.+++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|+..|||..+.|++|+|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 34679999999999999999999999999999999984 58999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy3994 231 GKGMKD 236 (282)
Q Consensus 231 ~~~~~~ 236 (282)
++..+.
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=125.85 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=74.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEE-EEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSI-NLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~-~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
++++|||+|||.++++++|+++|++||.|..+ +++. ++|||||+|.+.++|++|+..|||..+.|++|+|.||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 8875 4899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy3994 230 PGKGMKD 236 (282)
Q Consensus 230 ~~~~~~~ 236 (282)
.++..++
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876554
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=124.56 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=74.5
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
.....++|||+|||.++++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+. |||..+.|++|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 344679999999999999999999999999999999975 58999999999999999998 99999999999999
Q ss_pred eecCCCCC
Q psy3994 228 WAPGKGMK 235 (282)
Q Consensus 228 ~a~~~~~~ 235 (282)
|+.++..+
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99987654
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=125.32 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=74.2
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
....++|||+|||.++++++|+++|++||.|.++.+.. ++|||||+|.+.++|++|+..|||..+.|++|+|.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34578999999999999999999999999999999985 4599999999999999999999999999999999999
Q ss_pred cCCCC
Q psy3994 230 PGKGM 234 (282)
Q Consensus 230 ~~~~~ 234 (282)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98764
No 38
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=127.24 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=74.7
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
....++|||+|||.++++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++.|||..+.|+.|+|.|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 34578999999999999999999999999999999975 578999999999999999999999999999999999988
Q ss_pred CCCC
Q psy3994 232 KGMK 235 (282)
Q Consensus 232 ~~~~ 235 (282)
+...
T Consensus 99 ~~~~ 102 (109)
T 1x4a_A 99 GRGT 102 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=2.4e-18 Score=125.14 Aligned_cols=78 Identities=18% Similarity=0.372 Sum_probs=73.0
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
++++|||+|||..+++++|+++|++||.|.++++.. ++|||||+|.+.++|++|+..|||..+.|+.|+|.||.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 358999999999999999999999999999999975 47999999999999999999999999999999999999
Q ss_pred CCCC
Q psy3994 231 GKGM 234 (282)
Q Consensus 231 ~~~~ 234 (282)
+++.
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8753
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=125.82 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=73.7
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITL 226 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 226 (282)
.++++|||+|||.++++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|+..|||..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999873 4689999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy3994 227 AWAPGKGMK 235 (282)
Q Consensus 227 ~~a~~~~~~ 235 (282)
.|++++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999887543
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=124.59 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=75.0
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
..++++|||+|||.++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34579999999999999999999999999999999975 569999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
++++..+
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9987644
No 42
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=1.9e-18 Score=124.54 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=74.5
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..+.++|||+|||.++++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|+..|||..+.|+.|+|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34579999999999999999999999999999999885 57999999999999999999999999999999999999
Q ss_pred CCCC
Q psy3994 231 GKGM 234 (282)
Q Consensus 231 ~~~~ 234 (282)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
No 43
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.6e-19 Score=131.42 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=73.6
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
..++|||+|||..+++++|+++|++||.|.++.++.++|||||+|.+.++|++|+..|||..+.|++|+|.||....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999998654
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=126.16 Aligned_cols=82 Identities=24% Similarity=0.481 Sum_probs=75.5
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC-------CcEEEEEecCHHHHHHHHHHh-CCCeeCCeeEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP-------RGCAFVCMNRRQDAAKALYKL-KNTKLQGKTIT 225 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~-------kg~aFV~f~~~~~A~~Ai~~l-~g~~~~g~~l~ 225 (282)
.....++|||+|||..+++++|+++|++||.|..+.++.. +|||||+|.+.++|++|+..| ||..+.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3446799999999999999999999999999999999764 799999999999999999999 99999999999
Q ss_pred EEeecCCCCC
Q psy3994 226 LAWAPGKGMK 235 (282)
Q Consensus 226 v~~a~~~~~~ 235 (282)
|.||+++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987644
No 45
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=122.59 Aligned_cols=79 Identities=33% Similarity=0.542 Sum_probs=73.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
....++|||+|||.++++++|+++|++||.|..+.+.+ +||||+|.+.++|++|+..|||..+.|+.|+|.|++++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 44579999999999999999999999999999999975 7999999999999999999999999999999999988754
Q ss_pred C
Q psy3994 235 K 235 (282)
Q Consensus 235 ~ 235 (282)
.
T Consensus 85 ~ 85 (92)
T 2dgt_A 85 T 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 46
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=6.6e-18 Score=126.96 Aligned_cols=82 Identities=22% Similarity=0.440 Sum_probs=75.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP------RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~------kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||..+++++|+++|+.||.|..++++.. +|||||+|.+.++|++|+..|||..+.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345799999999999999999999999999999999853 68999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy3994 229 APGKGMKD 236 (282)
Q Consensus 229 a~~~~~~~ 236 (282)
++++....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876543
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=125.93 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=75.0
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.+.++|||+|||..+++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 4579999999999999999999999999999999875 5899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy3994 230 PGKGMKD 236 (282)
Q Consensus 230 ~~~~~~~ 236 (282)
+++..+.
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 48
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=5e-18 Score=123.84 Aligned_cols=78 Identities=23% Similarity=0.379 Sum_probs=72.2
Q ss_pred CCCCCcEEEecCCCc-cCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 154 ENMCSTTLWIGHLSK-LVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~-~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
...++++|||||||. ++++++|+++|++||.|.++++. +|||||+|.+.++|++|+..|||..+.|++|+|.|++++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 344679999999998 99999999999999999999984 799999999999999999999999999999999999876
Q ss_pred C
Q psy3994 233 G 233 (282)
Q Consensus 233 ~ 233 (282)
+
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 49
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=127.31 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=73.2
Q ss_pred CCCCcEEEecCCCccCcHHHHH---hhhccCCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhCCCeeCCe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELS---DTFGEYGDVVSINLIP---------PRGCAFVCMNRRQDAAKALYKLKNTKLQGK 222 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~---~~f~~~G~i~~~~~~~---------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~ 222 (282)
....++|||+|||+++++++|+ ++|++||.|..+.+++ ++|||||+|.+.++|++|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456899999999999999999 9999999999999985 347999999999999999999999999999
Q ss_pred eEEEEeecCCC
Q psy3994 223 TITLAWAPGKG 233 (282)
Q Consensus 223 ~l~v~~a~~~~ 233 (282)
+|+|.||.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999875
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=123.25 Aligned_cols=76 Identities=22% Similarity=0.449 Sum_probs=71.2
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
..+.++|||+|||..+++++|+++|++||.|.++.++. ++|||||+|.+.++|++|++.|||..+.|++|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999975 578999999999999999999999999999999999
Q ss_pred ec
Q psy3994 229 AP 230 (282)
Q Consensus 229 a~ 230 (282)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=4.6e-18 Score=125.66 Aligned_cols=80 Identities=21% Similarity=0.387 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCCeeCC---eeEEEE
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP-----RGCAFVCMNRRQDAAKALYKLKNTKLQG---KTITLA 227 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~-----kg~aFV~f~~~~~A~~Ai~~l~g~~~~g---~~l~v~ 227 (282)
..+++|||+|||.++++++|+++|++||.|.++.+... +|||||+|.+.++|++|+..|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45799999999999999999999999999999999864 7999999999999999999999999988 999999
Q ss_pred eecCCCCC
Q psy3994 228 WAPGKGMK 235 (282)
Q Consensus 228 ~a~~~~~~ 235 (282)
||+++..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99987644
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=126.75 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=74.5
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||.++++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|+..|||..+.|+.|+|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34579999999999999999999999999999999874 479999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
|++....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9976543
No 53
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=122.30 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=73.3
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
....++|||+|||.++|+++|+++|++||.|..+.+.+ +||||+|.+.++|++|+..|||..+.|++|+|.|++++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 34568999999999999999999999999999999975 7999999999999999999999999999999999998754
Q ss_pred C
Q psy3994 235 K 235 (282)
Q Consensus 235 ~ 235 (282)
+
T Consensus 84 ~ 84 (90)
T 2dnp_A 84 K 84 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.6e-18 Score=125.31 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=74.2
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCC-----eeEEEEeec
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQG-----KTITLAWAP 230 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g-----~~l~v~~a~ 230 (282)
...++|||+|||+++++++|+++|++||.|..+.++.. |||||+|.+.++|++|++.|||..+.| +.|+|.+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 35689999999999999999999999999999999887 999999999999999999999999999 999999999
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++...
T Consensus 92 ~~~~~ 96 (108)
T 1x4c_A 92 PRSPS 96 (108)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87543
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=125.19 Aligned_cols=74 Identities=28% Similarity=0.441 Sum_probs=67.7
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCc--eEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCC----eeCCeeEE
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGD--VVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNT----KLQGKTIT 225 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~--i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~----~~~g~~l~ 225 (282)
-.||||+|||+.+|+++|+++|++||. +.+|++++ +||||||+|.+.++|++|++.|||. .++|++|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 66888874 6899999999999999999999997 48999999
Q ss_pred EEeecC
Q psy3994 226 LAWAPG 231 (282)
Q Consensus 226 v~~a~~ 231 (282)
|+||++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999985
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=2.8e-18 Score=127.94 Aligned_cols=81 Identities=26% Similarity=0.461 Sum_probs=74.7
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
....+++|||+|||..+++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999974 47999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy3994 228 WAPGKGM 234 (282)
Q Consensus 228 ~a~~~~~ 234 (282)
|+.+++.
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987763
No 57
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=125.45 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=71.8
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCc-eEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC-CeeCCeeEEEEeecCCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGD-VVSINLIPPRGCAFVCMNRRQDAAKALYKLKN-TKLQGKTITLAWAPGKG 233 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~-i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g-~~~~g~~l~v~~a~~~~ 233 (282)
...++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|+..||| ..+.|++|+|.|++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 35689999999999999999999999999 555544 5789999999999999999999999 99999999999999876
Q ss_pred CCC
Q psy3994 234 MKD 236 (282)
Q Consensus 234 ~~~ 236 (282)
.++
T Consensus 85 ~~~ 87 (93)
T 2cqh_A 85 LRS 87 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 58
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=127.09 Aligned_cols=81 Identities=22% Similarity=0.442 Sum_probs=74.8
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
......++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|++|+..|||..+.|++|+|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3445679999999999999999999999999999999985 489999999999999999999999999999999999
Q ss_pred ecCCC
Q psy3994 229 APGKG 233 (282)
Q Consensus 229 a~~~~ 233 (282)
|+++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98764
No 59
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=121.33 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=73.7
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
..+.++|||+|+ ++++++|+++|++||.|.++.+..++|||||+|.+.++|++|+..|||..+.|++|+|.||+++..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 345789999996 899999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q psy3994 235 K 235 (282)
Q Consensus 235 ~ 235 (282)
.
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=125.71 Aligned_cols=81 Identities=28% Similarity=0.346 Sum_probs=74.7
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
.....++|||+|||.++++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344679999999999999999999999999999999875 56899999999999999999999999999999999
Q ss_pred eecCCCC
Q psy3994 228 WAPGKGM 234 (282)
Q Consensus 228 ~a~~~~~ 234 (282)
||.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9988754
No 61
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=8.4e-18 Score=123.93 Aligned_cols=79 Identities=24% Similarity=0.479 Sum_probs=73.4
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMK 235 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 235 (282)
.+.++|||+|||+++|+++|+++|++||.|..+.++ ++||||+|.+.++|++|+..|||..+.|++|+|.|++++..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 356899999999999999999999999999999987 489999999999999999999999999999999999987654
Q ss_pred C
Q psy3994 236 D 236 (282)
Q Consensus 236 ~ 236 (282)
.
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 62
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=127.01 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=74.0
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
....+++|||+|||..+++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 344578999999999999999999999999999999974 47999999999999999999999999999999999
Q ss_pred eecCCC
Q psy3994 228 WAPGKG 233 (282)
Q Consensus 228 ~a~~~~ 233 (282)
||.+++
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998765
No 63
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.1e-18 Score=128.69 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=71.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCC-ceEEEEEe--CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYG-DVVSINLI--PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G-~i~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
..++|||+|||+++++++|+++|++|| .|..+.+. .++|||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 358999999999999999999999999 99999986 378999999999999999999999999999999999998664
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=125.21 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=74.8
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||+++++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34569999999999999999999999999999999985 578999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9987643
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.8e-18 Score=125.65 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=74.8
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhC------CCeeCCe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLK------NTKLQGK 222 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~------g~~~~g~ 222 (282)
..+.++|||+|||+++++++|+++|++||.|..|.++. ++|||||+|.+.++|++|+..|| |..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 34578999999999999999999999999999999983 58999999999999999999999 9999999
Q ss_pred eEEEEeecCCCCC
Q psy3994 223 TITLAWAPGKGMK 235 (282)
Q Consensus 223 ~l~v~~a~~~~~~ 235 (282)
+|+|.|+.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999987644
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=126.52 Aligned_cols=79 Identities=24% Similarity=0.447 Sum_probs=73.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
...+++|||+|||..+++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999984 479999999999999999999999999999999999
Q ss_pred ecCCC
Q psy3994 229 APGKG 233 (282)
Q Consensus 229 a~~~~ 233 (282)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98774
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=126.61 Aligned_cols=79 Identities=29% Similarity=0.480 Sum_probs=73.7
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
..++|||+|||.++++++|+++|++||.|.++.+.. ++|||||+|.+.++|++|+..|||..+.|+.|+|.||++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 468999999999999999999999999999999986 469999999999999999999999999999999999987
Q ss_pred CCCC
Q psy3994 232 KGMK 235 (282)
Q Consensus 232 ~~~~ 235 (282)
+...
T Consensus 86 ~~~~ 89 (116)
T 2fy1_A 86 PSFQ 89 (116)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 7543
No 68
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=130.32 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=71.8
Q ss_pred CCCcEEEecCCCccCcHHHHH----hhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 156 MCSTTLWIGHLSKLVQEEELS----DTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~----~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
.++++|||||||+.+++++|+ ++|++||.|.+|.+.. ++|||||+|.+.++|..|+..|||..+.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 457899999999999998876 6999999999998863 789999999999999999999999999999999999
Q ss_pred ecCCC
Q psy3994 229 APGKG 233 (282)
Q Consensus 229 a~~~~ 233 (282)
|+++.
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 99775
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=122.80 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=71.7
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
..++++|||+|||..+++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999974 478999999999999999999999999999999999
Q ss_pred ecC
Q psy3994 229 APG 231 (282)
Q Consensus 229 a~~ 231 (282)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 975
No 70
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.3e-18 Score=123.91 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=71.9
Q ss_pred CCCcEEEecCCCc-cCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 156 MCSTTLWIGHLSK-LVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 156 ~~~~~l~V~nl~~-~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
.++++|||+|||+ .+++++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|||..+.|++|+|.|++++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 3579999999998 99999999999999999999996 69999999999999999999999999999999999987754
Q ss_pred C
Q psy3994 235 K 235 (282)
Q Consensus 235 ~ 235 (282)
.
T Consensus 86 ~ 86 (96)
T 2kvi_A 86 P 86 (96)
T ss_dssp -
T ss_pred C
Confidence 3
No 71
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=123.44 Aligned_cols=80 Identities=31% Similarity=0.541 Sum_probs=73.5
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceE-EEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCee----
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVV-SINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKT---- 223 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~-~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~---- 223 (282)
..++++|||+|||+++++++|+++|++||.|. +++++. ++|||||+|.+.++|++|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34579999999999999999999999999999 999885 4599999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q psy3994 224 ITLAWAPGKGM 234 (282)
Q Consensus 224 l~v~~a~~~~~ 234 (282)
|+|.||++.+.
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987753
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=123.75 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=74.0
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...+++|||+|||.++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34568999999999999999999999999999999886 3799999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy3994 230 PGKGMK 235 (282)
Q Consensus 230 ~~~~~~ 235 (282)
+....+
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 865433
No 73
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=9.2e-18 Score=126.19 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=74.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||.++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999885 458999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9987643
No 74
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.6e-18 Score=126.84 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=72.1
Q ss_pred CCCcEEEe--cCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCee-----CCeeEEEEe
Q psy3994 156 MCSTTLWI--GHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKL-----QGKTITLAW 228 (282)
Q Consensus 156 ~~~~~l~V--~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~-----~g~~l~v~~ 228 (282)
.++++||| |||+.++++++|+++|++||.|.++.++.+||||||+|.+.++|++|++.|||..+ .|++|.|.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 35689999 88999999999999999999999999998999999999999999999999999998 789999999
Q ss_pred ecCC
Q psy3994 229 APGK 232 (282)
Q Consensus 229 a~~~ 232 (282)
+...
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 9854
No 75
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=120.98 Aligned_cols=78 Identities=27% Similarity=0.381 Sum_probs=72.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccC--CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEY--GDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~--G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
....++|||+|||+++++++|+++|++| |.|.++.+. +|||||+|.+.++|++|+..|||..+.|++|+|.||+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 3457899999999999999999999999 999999875 599999999999999999999999999999999999987
Q ss_pred CC
Q psy3994 233 GM 234 (282)
Q Consensus 233 ~~ 234 (282)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 76
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=5.5e-18 Score=123.37 Aligned_cols=78 Identities=23% Similarity=0.431 Sum_probs=73.3
Q ss_pred CCCcEEEecCCCccCcHHHHH----hhhccCCceEEEEEe---CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 156 MCSTTLWIGHLSKLVQEEELS----DTFGEYGDVVSINLI---PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~----~~f~~~G~i~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
.++++|||+|||.++++++|+ ++|++||.|.++.+. .++|||||+|.+.++|++|+..|||..+.|++|+|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457999999999999999999 999999999999987 3689999999999999999999999999999999999
Q ss_pred ecCCC
Q psy3994 229 APGKG 233 (282)
Q Consensus 229 a~~~~ 233 (282)
++++.
T Consensus 86 a~~~~ 90 (97)
T 1nu4_A 86 AKTDS 90 (97)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 99875
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=6.1e-18 Score=125.21 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=75.0
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCee---CCeeE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKL---QGKTI 224 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~---~g~~l 224 (282)
.....++|||+|||.++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+..|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344579999999999999999999999999999999985 579999999999999999999999987 89999
Q ss_pred EEEeecCCCCC
Q psy3994 225 TLAWAPGKGMK 235 (282)
Q Consensus 225 ~v~~a~~~~~~ 235 (282)
+|.|+.++..+
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999987643
No 78
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=122.46 Aligned_cols=76 Identities=24% Similarity=0.469 Sum_probs=71.4
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
...++|||+|||+.+++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.||+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 3568999999999999999999999999999999985 37999999999999999999999999999999999987
Q ss_pred C
Q psy3994 231 G 231 (282)
Q Consensus 231 ~ 231 (282)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.3e-17 Score=123.57 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=72.3
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
...+.++|||+|||+.+++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 334579999999999999999999999999999999984 589999999999999999999999999999999999
Q ss_pred ecC
Q psy3994 229 APG 231 (282)
Q Consensus 229 a~~ 231 (282)
|.+
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 80
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=122.44 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=71.0
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEE--------EEEeC------CCcEEEEEecCHHHHHHHHHHhCCCee
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVS--------INLIP------PRGCAFVCMNRRQDAAKALYKLKNTKL 219 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~--------~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~ 219 (282)
.....++|||+|||.++++++|+++|++||.|.. ++++. ++|||||+|.+.++|++|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445799999999999999999999999999999 88874 478999999999999999999999999
Q ss_pred CCeeEEEEeec
Q psy3994 220 QGKTITLAWAP 230 (282)
Q Consensus 220 ~g~~l~v~~a~ 230 (282)
.|++|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999985
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.9e-18 Score=125.59 Aligned_cols=80 Identities=28% Similarity=0.396 Sum_probs=73.6
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCc-eEEEEEe-------CCCcEEEEEecCHHHHHHHHHHhC--CCeeCCeeEE
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGD-VVSINLI-------PPRGCAFVCMNRRQDAAKALYKLK--NTKLQGKTIT 225 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~-i~~~~~~-------~~kg~aFV~f~~~~~A~~Ai~~l~--g~~~~g~~l~ 225 (282)
.+.++|||+|||.++++++|+++|++||. |.++.++ .++|||||+|.+.++|++|+..|| +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 478999999999999999999996 5899999999
Q ss_pred EEeecCCCCC
Q psy3994 226 LAWAPGKGMK 235 (282)
Q Consensus 226 v~~a~~~~~~ 235 (282)
|.||+++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987643
No 82
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=121.50 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=71.0
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe--CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI--PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
...+++|||+|||+++++++|+++|++||.|. +.++ .++|||||+|.+.++|++|+..|||..+.|++|+|.|++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34578999999999999999999999999986 4444 57899999999999999999999999999999999999887
Q ss_pred C
Q psy3994 233 G 233 (282)
Q Consensus 233 ~ 233 (282)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 83
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=2.4e-18 Score=126.20 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=71.2
Q ss_pred CCcEEEecCCCc------cCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCC-ee
Q psy3994 157 CSTTLWIGHLSK------LVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQG-KT 223 (282)
Q Consensus 157 ~~~~l~V~nl~~------~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g-~~ 223 (282)
.+++|||+|||. ++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+..|||..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 358999999999 999999999999999999999873 67999999999999999999999999999 99
Q ss_pred EEEEeecCC
Q psy3994 224 ITLAWAPGK 232 (282)
Q Consensus 224 l~v~~a~~~ 232 (282)
|+|.+|.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 84
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=122.62 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=72.9
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
..+.++|||+|||.++++++|+++|+.|| |.++.++. ++|||||+|.+.++|++|+ .|||..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34569999999999999999999999999 99999874 3789999999999999999 999999999999999
Q ss_pred eecCCCCCC
Q psy3994 228 WAPGKGMKD 236 (282)
Q Consensus 228 ~a~~~~~~~ 236 (282)
++.++..+.
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 999876543
No 85
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=7.6e-18 Score=120.56 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=72.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
.+++|||+|||+++++++|+++|++| .|.++++..++|||||+|.+.++|++|+..|||..+.|++|+|.||....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46899999999999999999999999 99999998899999999999999999999999999999999999997654
No 86
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=125.03 Aligned_cols=76 Identities=22% Similarity=0.383 Sum_probs=72.4
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP-RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~-kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
++|||+|||+++|+++|+++|++||.|.++.++.. +|||||+|.+.++|++|+..|||..+.|++|+|.|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 58999999999999999999999999999999985 99999999999999999999999999999999999988753
No 87
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=1.4e-17 Score=124.26 Aligned_cols=75 Identities=24% Similarity=0.446 Sum_probs=70.9
Q ss_pred CCcEEEecCCCcc-CcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 157 CSTTLWIGHLSKL-VQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 157 ~~~~l~V~nl~~~-~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
.+++|||+|||++ +++++|+++|++||.|..+.+ ++|||||+|.+.++|++|+..|||..+.|++|+|.|++++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 4689999999999 999999999999999999998 67999999999999999999999999999999999998654
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.4e-18 Score=124.97 Aligned_cols=74 Identities=14% Similarity=0.265 Sum_probs=70.0
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
..++|||||||+++|+++|+++|++||.|.+|+++. ++|||||+|.+.++|++|+. ++|..+.|+.|.|.|+..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 458999999999999999999999999999999985 68999999999999999999 899999999999999875
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=9.6e-18 Score=128.77 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=74.3
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
...++++|||+|||.++++++|+++|++||.|..++++. ++|||||+|.+.++|++|+..|||..+.|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344678999999999999999999999999999999984 68999999999999999999999999999999999
Q ss_pred eecCCC
Q psy3994 228 WAPGKG 233 (282)
Q Consensus 228 ~a~~~~ 233 (282)
|+.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998765
No 90
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=124.01 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=74.0
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceE--------EEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVV--------SINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQ 220 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~--------~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~ 220 (282)
....++|||+|||..+++++|+++|++||.|. .+++.. ++|||||+|.+.++|++|+..|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44579999999999999999999999999998 588774 4789999999999999999999999999
Q ss_pred CeeEEEEeecCCCCC
Q psy3994 221 GKTITLAWAPGKGMK 235 (282)
Q Consensus 221 g~~l~v~~a~~~~~~ 235 (282)
|++|+|.|++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987644
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.4e-17 Score=125.79 Aligned_cols=77 Identities=21% Similarity=0.356 Sum_probs=71.3
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
.....++|||+|||+++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|++.|||..+.|++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999975 47999999999999999999999999999999999
Q ss_pred eec
Q psy3994 228 WAP 230 (282)
Q Consensus 228 ~a~ 230 (282)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 92
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=4.2e-17 Score=135.14 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=72.4
Q ss_pred CCcEEEecCCC-ccCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 157 CSTTLWIGHLS-KLVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 157 ~~~~l~V~nl~-~~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
++++|||+||| ..+++++|+++|++||.|.++++++ ++|||||+|.+.++|++|++.|||..+.|++|+|.+++.+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 46899999999 8999999999999999999999987 58999999999999999999999999999999999997543
No 93
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-17 Score=123.05 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=72.9
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
.....++|||+|||..+++++|+++|++||.|..++++. ++|||||+|.+.++|++|+..+++ .+.|++|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344579999999999999999999999999999999985 578999999999999999999998 8999999999
Q ss_pred eecCCCC
Q psy3994 228 WAPGKGM 234 (282)
Q Consensus 228 ~a~~~~~ 234 (282)
||.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9986543
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=123.64 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=74.7
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhcc-CCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCe-eCCeeEEEEe
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGE-YGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTK-LQGKTITLAW 228 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~-~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~-~~g~~l~v~~ 228 (282)
.+.++|||+|||+++|+++|+++|++ ||.|.++.++. ++|||||+|.+.++|++|+..|||.. +.|++|+|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 35689999999999999999999999 99999999985 48999999999999999999999999 9999999999
Q ss_pred ecCCCCCC
Q psy3994 229 APGKGMKD 236 (282)
Q Consensus 229 a~~~~~~~ 236 (282)
+.++..+.
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98776443
No 95
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=1.7e-18 Score=124.54 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=65.4
Q ss_pred cEEEecCCCccCcHHHHHhhhccCC--ceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYG--DVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G--~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
.+|||||||.++|+++|+++|++|| .|.+++++. ++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999874 57999999999999999999999999999999999998
Q ss_pred CCCC
Q psy3994 231 GKGM 234 (282)
Q Consensus 231 ~~~~ 234 (282)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7753
No 96
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.4e-17 Score=121.39 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=72.2
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
..+.++|||+|||..+++++|+++|++|| |.+++++. ++|||||+|.+.++|++|+ .|||..+.|++|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34579999999999999999999999997 99999984 4789999999999999999 8999999999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9987644
No 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=123.54 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCCCcEEEecCCCccC------cHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCe-e
Q psy3994 155 NMCSTTLWIGHLSKLV------QEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGK-T 223 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~------te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~-~ 223 (282)
...+++|||||||..+ ++++|+++|++||.|.++.+++ ++|||||+|.+.++|++|+..|||..+.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3456899999999999 7899999999999999999884 689999999999999999999999999998 9
Q ss_pred EEEEeecCC
Q psy3994 224 ITLAWAPGK 232 (282)
Q Consensus 224 l~v~~a~~~ 232 (282)
|+|.||...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.3e-17 Score=127.38 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=75.0
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
....+++|||+|||..+|+++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 344578999999999999999999999999999999975 38999999999999999999999999999999999
Q ss_pred eecCCCCC
Q psy3994 228 WAPGKGMK 235 (282)
Q Consensus 228 ~a~~~~~~ 235 (282)
||.++..+
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876543
No 99
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.3e-17 Score=131.39 Aligned_cols=80 Identities=26% Similarity=0.407 Sum_probs=74.8
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP-RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~-kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.....++|||||||+++|+++|+++|++||.|.+++++.. +|||||+|.+.++|.+|+..|||..+.|++|+|.|++++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 3445799999999999999999999999999999999874 999999999999999999999999999999999999876
Q ss_pred C
Q psy3994 233 G 233 (282)
Q Consensus 233 ~ 233 (282)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=127.90 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=75.9
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
.....++|||+|||.++++++|+++|+.||.|.+++++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999974 47999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy3994 228 WAPGKGMKD 236 (282)
Q Consensus 228 ~a~~~~~~~ 236 (282)
||+++..++
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876553
No 101
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=2e-17 Score=124.26 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=73.0
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.++++|||+|||.++++++|+++|++||.|.++.++. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3568999999999999999999999999999999975 6799999999999999999999999999999999999865
Q ss_pred C
Q psy3994 233 G 233 (282)
Q Consensus 233 ~ 233 (282)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-18 Score=120.61 Aligned_cols=76 Identities=25% Similarity=0.316 Sum_probs=70.4
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.++++|||+|||+++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3568999999999999999999999999999999885 4799999999999999999999999999999998886
Q ss_pred cC
Q psy3994 230 PG 231 (282)
Q Consensus 230 ~~ 231 (282)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 103
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=2.7e-17 Score=117.71 Aligned_cols=74 Identities=19% Similarity=0.436 Sum_probs=70.0
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.++|||+|||+++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+ .|||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 48999999999999999999999999999999874 4899999999999999999 8999999999999999986
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 104
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=3.1e-17 Score=122.23 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=70.6
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||.++++++|+++|+.||.|.+++++. ++|||||+|.+.++|++|+..+ |..+.|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 3568999999999999999999999999999999975 4799999999999999999976 58999999999999
Q ss_pred cCCCCC
Q psy3994 230 PGKGMK 235 (282)
Q Consensus 230 ~~~~~~ 235 (282)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987654
No 105
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=4.9e-17 Score=123.89 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=75.6
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....+++|||+|||..+++++|+++|++||.|.++++.. ++|||||+|.+.++|++|+..|||..+.|++|+|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445679999999999999999999999999999999986 679999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
|.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 106
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=122.70 Aligned_cols=81 Identities=23% Similarity=0.403 Sum_probs=72.9
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCce----EEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDV----VSINLIP--PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i----~~~~~~~--~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.++++|||+|||.++|+++|+++|++||.| ..+++.. ++|||||+|.+.++|++|+..|||..+.|++|+|.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 357999999999999999999999999998 5666553 6899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy3994 230 PGKGMKD 236 (282)
Q Consensus 230 ~~~~~~~ 236 (282)
+++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 9876543
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-17 Score=116.17 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=71.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
....++|||+|||.++++++|+++|+.| .|.+++++. ++|||||+|.+.++|++|+. |||..+.|+.|+|.+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3457899999999999999999999999 999999885 47899999999999999999 9999999999999999
Q ss_pred cCCC
Q psy3994 230 PGKG 233 (282)
Q Consensus 230 ~~~~ 233 (282)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8774
No 108
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=6.8e-17 Score=123.20 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=70.7
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-CCcE-EEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecCCCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-PRGC-AFVCMNRRQDAAKALYKLKNTKLQG--KTITLAWAPGKGM 234 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-~kg~-aFV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~a~~~~~ 234 (282)
-.|||+||+..+|+++|+++|++||.|.+|.+.. ++|| |||+|.+.++|+.|++.|||..+.| ++|+|+||+++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 5688999999999999999999999999998875 6788 9999999999999999999999988 8999999998754
Q ss_pred C
Q psy3994 235 K 235 (282)
Q Consensus 235 ~ 235 (282)
.
T Consensus 109 ~ 109 (130)
T 3zzy_A 109 N 109 (130)
T ss_dssp C
T ss_pred e
Confidence 3
No 109
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=122.56 Aligned_cols=81 Identities=25% Similarity=0.391 Sum_probs=74.0
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||+.+++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+.. ||..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34579999999999999999999999999999999985 468999999999999999998 99999999999999
Q ss_pred ecCCCCCC
Q psy3994 229 APGKGMKD 236 (282)
Q Consensus 229 a~~~~~~~ 236 (282)
+.++...+
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99876543
No 110
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=3.8e-17 Score=116.47 Aligned_cols=74 Identities=26% Similarity=0.423 Sum_probs=67.8
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||+++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+. +++..+.|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999974 47899999999999999996 588899999999998
Q ss_pred e
Q psy3994 229 A 229 (282)
Q Consensus 229 a 229 (282)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 111
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=4.3e-17 Score=130.00 Aligned_cols=111 Identities=21% Similarity=0.308 Sum_probs=88.7
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
++++|||+|||+++++++|+++|++||.|.++++.. ++|||||+|.+.++|++|+..|+|..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 368999999999999999999999999999999874 46899999999999999999999999999999999998
Q ss_pred CCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccC
Q psy3994 231 GKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDED 275 (282)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~ 275 (282)
+.........-+ +..+|.+ .++++|..+++ .|.+...
T Consensus 82 ~~~~~~~~~~l~------v~nl~~~--~t~~~l~~~f~~~G~i~~~ 119 (168)
T 1b7f_A 82 PGGESIKDTNLY------VTNLPRT--ITDDQLDTIFGKYGSIVQK 119 (168)
T ss_dssp CCSSTTTTCEEE------EESCCTT--CCHHHHHHHHTSSSCEEEE
T ss_pred CCcccCCCCCEE------EeCCCCC--CCHHHHHHhhhcCCcEEEE
Confidence 776433222111 3445543 35788887665 4544433
No 112
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1e-17 Score=129.61 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=74.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||.++|+++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.|++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 568999999999999999999999999999999874 57899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy3994 231 GKGMKD 236 (282)
Q Consensus 231 ~~~~~~ 236 (282)
++..+.
T Consensus 126 ~~~~~~ 131 (135)
T 2lea_A 126 YGRPPD 131 (135)
T ss_dssp CCCCCT
T ss_pred CCCCCc
Confidence 876443
No 113
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=121.33 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=70.5
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||.++++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3468999999999999999999999999997665552 5799999999999999999999999999999999999
Q ss_pred cCCC
Q psy3994 230 PGKG 233 (282)
Q Consensus 230 ~~~~ 233 (282)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8654
No 114
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=99.71 E-value=2.4e-18 Score=133.92 Aligned_cols=125 Identities=19% Similarity=0.356 Sum_probs=111.5
Q ss_pred Cc-hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhc--CCCCccceeehhhHHHHHhhhhc
Q psy3994 1 MD-VIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKC--KPEYKVPALYVIDSLVRQSRHQF 77 (282)
Q Consensus 1 m~-~~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~--~p~~kl~~lYv~Dsi~r~~~~~~ 77 (282)
|+ ..++|++.|++|.+ |+.+|++++.|++.|.++++.+|+.|.+++++. ++.+||+.|||+|+|+++++++.
T Consensus 1 m~fs~~~l~~kL~~L~~-----sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~ 75 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLED-----SQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQK 75 (142)
T ss_dssp -CCCHHHHHHHHHTCCS-----CHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHhccc-----cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcC
Confidence 44 36789999999954 666999999999999999999999999999997 77999999999999999998876
Q ss_pred cCCCCchhhHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccCcccCCcccccccc
Q psy3994 78 QDKDVFGPRFARNLKATFQHLYQ-CPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFD 132 (282)
Q Consensus 78 ~~~~~~~~~f~~~l~~~f~~v~~-~~~~~~~k~~~~l~~w~~~~~f~~~~i~~~~~ 132 (282)
+. .|+..|.+.|.+.|..++. ++++.+.++.+++++|+++++|+.+.+..+..
T Consensus 76 ~~--~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~ 129 (142)
T 2km4_A 76 II--QFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVNDIER 129 (142)
T ss_dssp CC--HHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred ch--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCcCHHHHHHHHH
Confidence 53 6999999999999999998 88999999999999999999999988776543
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=4.3e-17 Score=129.37 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=74.8
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||+++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+..|||..+.|++|+|.||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy3994 230 PGKGMKD 236 (282)
Q Consensus 230 ~~~~~~~ 236 (282)
+++..++
T Consensus 148 ~~~~~~~ 154 (158)
T 2kn4_A 148 RYGRPPD 154 (158)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 9875443
No 116
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.6e-17 Score=118.26 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=69.8
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe--CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI--PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
....++|||+|||.++++++|+++|++||.|.-+... .++|||||+|.+.++|++|+..|||..+.|+.|+|.|++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 3457999999999999999999999999988322211 26899999999999999999999999999999999999987
Q ss_pred CC
Q psy3994 233 GM 234 (282)
Q Consensus 233 ~~ 234 (282)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 117
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=122.23 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=72.8
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||..+++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.||.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 358999999999999999999999999999999885 37999999999999999999999999999999999999
Q ss_pred CCCC
Q psy3994 231 GKGM 234 (282)
Q Consensus 231 ~~~~ 234 (282)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 8753
No 118
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=6.6e-17 Score=128.10 Aligned_cols=79 Identities=30% Similarity=0.450 Sum_probs=73.3
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||..+|+++|+++|++||.|..|.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3579999999999999999999999999999999974 4689999999999999999999999999999999999
Q ss_pred cCCCC
Q psy3994 230 PGKGM 234 (282)
Q Consensus 230 ~~~~~ 234 (282)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87643
No 119
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=118.98 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=71.3
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe-CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI-PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
.+.++|||+|||..+++++|+++|++||.|..+... .++|||||+|.+.++|++|+..|||..+.|++|+|.|+.+++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 356899999999999999999999999998877211 2689999999999999999999999999999999999988764
Q ss_pred C
Q psy3994 235 K 235 (282)
Q Consensus 235 ~ 235 (282)
.
T Consensus 94 ~ 94 (96)
T 1fjc_A 94 T 94 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=6.7e-17 Score=128.53 Aligned_cols=110 Identities=27% Similarity=0.331 Sum_probs=87.3
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP------RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~------kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
+++|||+|||+++++++|+++|+.||.|.++.+... +|||||+|.+.++|++|+..|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 589999999999999999999999999999999863 49999999999999999999999999999999999987
Q ss_pred CCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccC
Q psy3994 232 KGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDED 275 (282)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~ 275 (282)
.........- -+..+|.+ .++++|..+++ .|.+...
T Consensus 82 ~~~~~~~~~l------~v~nl~~~--~t~~~l~~~f~~~G~i~~~ 118 (167)
T 1fxl_A 82 SSASIRDANL------YVSGLPKT--MTQKELEQLFSQYGRIITS 118 (167)
T ss_dssp CCGGGTTCEE------EEESCCTT--CCHHHHHHHHGGGSCEEEE
T ss_pred CcccCCCCcE------EECCCCCc--CCHHHHHHHHHhcCCEeEE
Confidence 6532211111 13444443 35788887665 3544433
No 121
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=117.08 Aligned_cols=69 Identities=13% Similarity=0.265 Sum_probs=64.5
Q ss_pred CcEEEecCCCccC------cHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCe-eEEE
Q psy3994 158 STTLWIGHLSKLV------QEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGK-TITL 226 (282)
Q Consensus 158 ~~~l~V~nl~~~~------te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~-~l~v 226 (282)
+++|||||||..+ ++++|+++|++||.|.++.+++ ++|||||+|.+.++|++|+..|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3789999999999 7799999999999999999884 689999999999999999999999999999 8876
No 122
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=5.3e-17 Score=129.94 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=74.4
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITL 226 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 226 (282)
....++++|||+|||+.+++++|+.+|++||.|..|.++. ++|||||+|.+.++|++|+..|||..+.|++|+|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455678999999999999999999999999999999985 3799999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy3994 227 AWAPGKGMK 235 (282)
Q Consensus 227 ~~a~~~~~~ 235 (282)
.||.+++.+
T Consensus 147 ~~a~~~~~~ 155 (165)
T 1rk8_A 147 DWCFVKGPK 155 (165)
T ss_dssp EESEECC--
T ss_pred EEecCCCCC
Confidence 999877644
No 123
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=118.53 Aligned_cols=82 Identities=28% Similarity=0.404 Sum_probs=70.1
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe---CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI---PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~---~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
...+.++|||+|||.++++++|+++|+.|+.+.-+... .++|||||+|.+.++|++|+..|||..+.|+.|+|.||+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 34467999999999999999999999998654433322 146999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 124
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=120.89 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
....++|||||||.++++++|+++|+.|| |.+++++. ++|||||+|.+.++|++|+ .|||..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34579999999999999999999999999 99999875 4789999999999999999 899999999999999
Q ss_pred eecCCC
Q psy3994 228 WAPGKG 233 (282)
Q Consensus 228 ~a~~~~ 233 (282)
+|+++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998763
No 125
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-17 Score=120.64 Aligned_cols=78 Identities=18% Similarity=0.362 Sum_probs=71.8
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCee--------CCe
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKL--------QGK 222 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~--------~g~ 222 (282)
...++|||+|||+++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4568999999999999999999999999999999985 479999999999999999999999999 578
Q ss_pred eEEEEeecCCC
Q psy3994 223 TITLAWAPGKG 233 (282)
Q Consensus 223 ~l~v~~a~~~~ 233 (282)
+|+|.||.+++
T Consensus 103 ~l~v~~a~p~~ 113 (114)
T 1x5o_A 103 PLLCKFSGPSS 113 (114)
T ss_dssp CBEEEECCCSC
T ss_pred ceeEEccCCCC
Confidence 89999998664
No 126
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=6.9e-17 Score=115.82 Aligned_cols=74 Identities=26% Similarity=0.397 Sum_probs=63.1
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCee--CCeeEEEEeecCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKL--QGKTITLAWAPGK 232 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~--~g~~l~v~~a~~~ 232 (282)
.+.++|||||||+++|+++|+++|++||.|.+++++. +||||||+|.+.++|++ ++|..+ .|++|.|.+|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3568999999999999999999999999999999986 79999999999999883 566654 6999999999877
Q ss_pred C
Q psy3994 233 G 233 (282)
Q Consensus 233 ~ 233 (282)
.
T Consensus 85 ~ 85 (89)
T 3d2w_A 85 H 85 (89)
T ss_dssp -
T ss_pred C
Confidence 5
No 127
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=6.5e-17 Score=122.72 Aligned_cols=77 Identities=23% Similarity=0.452 Sum_probs=72.5
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
..+++|||||+ ++++++|+++|++||.|.++.+..++|||||+|.+.++|++|+..|||..+.|++|+|.||+++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 45799999996 699999999999999999999999999999999999999999999999999999999999998754
No 128
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=1.9e-17 Score=114.65 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=65.1
Q ss_pred EEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 160 ~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
+|||+|||+++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|++ +||..+.|++|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999874 47999999999999999998 9999999999999986
No 129
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=5.1e-17 Score=128.74 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=70.5
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCC--ceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYG--DVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G--~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
..++|||||||+++|+++|+++|+.|| .|.+++++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999974 579999999999999999999999999999999999
Q ss_pred ecCC
Q psy3994 229 APGK 232 (282)
Q Consensus 229 a~~~ 232 (282)
|.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9865
No 130
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.3e-17 Score=119.63 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=68.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||+++++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+..|||..+.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 458999999999999999999999999998766653 57999999999999999999999999999999999986
Q ss_pred C
Q psy3994 231 G 231 (282)
Q Consensus 231 ~ 231 (282)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 131
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=4.5e-17 Score=137.04 Aligned_cols=80 Identities=23% Similarity=0.420 Sum_probs=72.7
Q ss_pred CCCCcEEEecCCCccC---------cHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCee------
Q psy3994 155 NMCSTTLWIGHLSKLV---------QEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKL------ 219 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~---------te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~------ 219 (282)
...+++||||||+..+ ++++|+.+|++||+|.+|+++.+||||||+|.++++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4467999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CCeeEEEEeecCCCC
Q psy3994 220 ------QGKTITLAWAPGKGM 234 (282)
Q Consensus 220 ------~g~~l~v~~a~~~~~ 234 (282)
.|+.|.|+||+....
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 132
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.4e-17 Score=120.80 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=72.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||.++++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+.. +|..+.|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999986 478999999999999999997 9999999999999999
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 88644
No 133
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.1e-17 Score=120.06 Aligned_cols=75 Identities=31% Similarity=0.558 Sum_probs=67.2
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
++|||+|||.++++++|+++|++||.|.++.+.. ++|||||+|.+.+ |.+|+..|||..+.|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999999974 5899999999999 99999999999999999999999876
Q ss_pred CC
Q psy3994 233 GM 234 (282)
Q Consensus 233 ~~ 234 (282)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 134
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=127.99 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=72.3
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEE--EEEeC------CCcEEEEEecCHHHHHHHHHHhCCC----eeCC
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVS--INLIP------PRGCAFVCMNRRQDAAKALYKLKNT----KLQG 221 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~--~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~----~~~g 221 (282)
....+++|||||||+++|+++|+++|++||.|.. |+++. +||||||+|.+. +|.+|+..|||. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 88874 579999999999 999999999999 9999
Q ss_pred eeEEEEeecCCC
Q psy3994 222 KTITLAWAPGKG 233 (282)
Q Consensus 222 ~~l~v~~a~~~~ 233 (282)
++|+|.||+++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998764
No 135
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=116.89 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||..+++++|+++|++||.|..+.++. ++|||||+|.+.++|++|+. +++.+.|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 34568999999999999999999999999999999875 46899999999999999998 57899999999999
Q ss_pred ecCCCCC
Q psy3994 229 APGKGMK 235 (282)
Q Consensus 229 a~~~~~~ 235 (282)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9987543
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=7.1e-17 Score=134.46 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=87.4
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.+.++|||||||+++|+++|+++|++||.|.+|++++ ++|||||+|.+.++|++|+..+||..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3568999999999999999999999999999999974 5799999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccC
Q psy3994 230 PGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDED 275 (282)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~ 275 (282)
........ .. ....-+..+|. -.++++|+.+++ .|.+..+
T Consensus 93 ~~~~~~~~--~~--~~~l~v~nl~~--~~t~~~l~~~F~~~G~i~~~ 133 (213)
T 4f02_A 93 QRDPSLRK--SG--VGNIFIKNLDK--SIDNKALYDTFSAFGNILSC 133 (213)
T ss_dssp CCCTHHHH--HC--TTEEEEESCCT--TCCHHHHHHHHGGGSCEEEE
T ss_pred cccccccc--cc--cccceECCccc--ccHHHHHHHHHhhcCCeEEE
Confidence 76542210 00 00111334444 346888887665 4555444
No 137
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-17 Score=114.57 Aligned_cols=70 Identities=30% Similarity=0.468 Sum_probs=66.3
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
++|||+|||+++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+..++ ..+.|++|+|+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999985 47899999999999999999999 9999999999997
No 138
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=121.09 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=69.4
Q ss_pred EEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcE-EEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecCCCCC
Q psy3994 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC-AFVCMNRRQDAAKALYKLKNTKLQG--KTITLAWAPGKGMK 235 (282)
Q Consensus 160 ~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~-aFV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~a~~~~~~ 235 (282)
.|||+||++.+++++|+++|++||.|.+|.+....|| |||+|.+.++|..|++.|||..+.| ++|+|.+|+++...
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 4689999999999999999999999999998765696 9999999999999999999999977 68999999987543
No 139
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=124.41 Aligned_cols=77 Identities=30% Similarity=0.480 Sum_probs=70.9
Q ss_pred CCCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q psy3994 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITL 226 (282)
Q Consensus 153 ~~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 226 (282)
......++|||+|||..+++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+..|||..+.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445679999999999999999999999999999999975 5899999999999999999999999999999999
Q ss_pred Eee
Q psy3994 227 AWA 229 (282)
Q Consensus 227 ~~a 229 (282)
+||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 140
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=6.9e-17 Score=115.04 Aligned_cols=71 Identities=18% Similarity=0.422 Sum_probs=67.9
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccC----C-------ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEY----G-------DVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~----G-------~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
..++|||+|||+++++++|+++|++| | .|.++.+..++|||||+|.+.++|++|+ .|||..+.|++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 46899999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred EEe
Q psy3994 226 LAW 228 (282)
Q Consensus 226 v~~ 228 (282)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 141
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=115.04 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=68.8
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCc-EEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRG-CAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMK 235 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg-~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 235 (282)
..++|||+|||+++++++|+++|++||.|.+|.+.+..+ ||||+|.+.++|++|+. |||..+.|+.|+|.++.++...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 457999999999999999999999999999983333222 99999999999999999 9999999999999999876544
No 142
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-17 Score=122.14 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=70.9
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||.++++++|+++|+.||.|..+.++. ++|||||+|.+.++|++|+ .|||..+.|+.|+|.|++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 358999999999999999999999999999999974 6799999999999999999 999999999999999998
Q ss_pred CCC
Q psy3994 231 GKG 233 (282)
Q Consensus 231 ~~~ 233 (282)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 143
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=113.45 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=65.4
Q ss_pred cEEEecCCCccCcHHH----HHhhhccC-CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 159 TTLWIGHLSKLVQEEE----LSDTFGEY-GDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~----l~~~f~~~-G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
+.|||+|||..+++++ |+++|++| |+|.+|. .|+|||.|.+.++|++|++.|||..+.||+|+|.+|+.+.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 4499999999999987 56899999 5999982 3999999999999999999999999999999999999875
Q ss_pred C
Q psy3994 234 M 234 (282)
Q Consensus 234 ~ 234 (282)
.
T Consensus 86 d 86 (96)
T 2diu_A 86 E 86 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 144
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.2e-16 Score=126.39 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=70.7
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecCCC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP--PRGCAFVCMNRRQDAAKALYKLKNTKLQG--KTITLAWAPGKG 233 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~--~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~a~~~~ 233 (282)
..+|||+||++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|+.|++.|||..+.| ++|+|.||+++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 46799999999999999999999999999999863 57899999999999999999999999955 999999999875
Q ss_pred C
Q psy3994 234 M 234 (282)
Q Consensus 234 ~ 234 (282)
.
T Consensus 126 l 126 (164)
T 1sjr_A 126 L 126 (164)
T ss_dssp C
T ss_pred c
Confidence 3
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=125.27 Aligned_cols=80 Identities=33% Similarity=0.456 Sum_probs=70.9
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEE--------EEEe---CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVS--------INLI---PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTI 224 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~--------~~~~---~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l 224 (282)
.++++|||+|||+.+|+++|+.+|++||.|.. +.+. .++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 35689999999999999999999999998865 3333 478999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q psy3994 225 TLAWAPGKGMK 235 (282)
Q Consensus 225 ~v~~a~~~~~~ 235 (282)
+|.||++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876544
No 146
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.2e-16 Score=121.65 Aligned_cols=75 Identities=19% Similarity=0.413 Sum_probs=70.5
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.++|||+|||.++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+ .|||..+.|+.|+|.|+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 58999999999999999999999999999999874 4899999999999999999 7999999999999999986
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 147
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=116.73 Aligned_cols=79 Identities=24% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEE-----EEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVS-----INLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~-----~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
...++|||+|||.++++++|+++|++||.|.. .....++|||||+|.+.++|++|++ |||..+.|+.|+|.+|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 35689999999999999999999999997765 1222478999999999999999998 99999999999999999
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87644
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=5.2e-17 Score=135.28 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=71.8
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
.++|||+|||+.+|+++|+++|++||.|.+++++. ++|||||+|.+.++|++|++.|||..++|++|+|.||+++.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 47899999999999999999999999999999875 68999999999999999999999999999999999998764
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4e-16 Score=123.89 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=87.8
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
++|||+|||+++|+++|+++|++||.|.++++.. ++|||||+|.+.++|.+|+..|||..+.|++|+|.|+.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999974 56999999999999999999999999999999999998765
Q ss_pred CCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCCC
Q psy3994 234 MKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDTV 277 (282)
Q Consensus 234 ~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (282)
..... ....+.+-+++.-.++++|..+++ .|.+....+
T Consensus 81 ~~~~~------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 119 (166)
T 3md3_A 81 QSSSD------DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV 119 (166)
T ss_dssp CCCCT------TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred CCCCC------CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE
Confidence 43211 011122223333346788887655 455554433
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.9e-16 Score=122.91 Aligned_cols=115 Identities=22% Similarity=0.373 Sum_probs=89.2
Q ss_pred HhhcCChhhHHHHHHHHHhhc-cCcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHHHH
Q psy3994 97 HLYQCPPEDKSKIIRVLNLWQ-KNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEEL 175 (282)
Q Consensus 97 ~v~~~~~~~~~k~~~~l~~w~-~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~~l 175 (282)
++.....+++.+++..++... .+..+.... +.+. ........++|||+|||..+++++|
T Consensus 45 fV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~-------~~~~-------------~~~~~~~~~~l~v~nl~~~~t~~~l 104 (166)
T 3md3_A 45 FVEYHQSHDANIALQTLNGKQIENNIVKINW-------AFQS-------------QQSSSDDTFNLFVGDLNVNVDDETL 104 (166)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEE-------CCCC-------------CCCCCTTCEEEEEESCCTTCCHHHH
T ss_pred EEEeCCHHHHHHHHHHcCCCccCCCeeEEEE-------cCCC-------------CCCCCCCCceEEECCCCCCCCHHHH
Confidence 333356888889998887332 222222221 2111 0122335689999999999999999
Q ss_pred HhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 176 SDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 176 ~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
+++|++||.|.++.+.. ++|||||+|.+.++|.+|+..|||..++|++|+|.||++
T Consensus 105 ~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 105 RNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999999999999974 478999999999999999999999999999999999863
No 151
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=115.67 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=70.2
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEE-EEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVS-INLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~-~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||+++|+++|+++|++||.|.. +.++. ++|||||+|.+.++|++|+.. ||..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35689999999999999999999999999987 77763 689999999999999999997 999999999999999
Q ss_pred cCCC
Q psy3994 230 PGKG 233 (282)
Q Consensus 230 ~~~~ 233 (282)
..+.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7664
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=1.7e-16 Score=119.29 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=68.0
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCee-----EEEEeecC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKT-----ITLAWAPG 231 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~-----l~v~~a~~ 231 (282)
..++|||+|||.++++++|+++|++||.|..+.++.. |||||+|.+.++|++|++.|||..+.|+. ++|..+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4689999999999999999999999999999999877 99999999999999999999999999998 88888776
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
+.
T Consensus 94 ~~ 95 (115)
T 3beg_B 94 RS 95 (115)
T ss_dssp --
T ss_pred CC
Confidence 54
No 153
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=118.64 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=70.8
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCce-EEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDV-VSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i-~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||+++|+++|+++|+.||.| ..++++. ++|||||+|.+.++|++|+.. ||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356899999999999999999999999999 7888874 789999999999999999987 999999999999999
Q ss_pred cCCC
Q psy3994 230 PGKG 233 (282)
Q Consensus 230 ~~~~ 233 (282)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8653
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=113.87 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=70.6
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEE-EeC--CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSIN-LIP--PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKG 233 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~-~~~--~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 233 (282)
.+++|||+|||+++++++|+++|++||.|.+++ ++. ..+.|||+|.+.++|++|+..|||..+.|++|+|.+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 468999999999999999999999999999995 665 34569999999999999999999999999999999999873
No 155
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=114.74 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=69.2
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
...++|||+|||+++|+++|+++|++||. .+++++. ++|||||+|.+.++|++|+. +|+..+.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 35689999999999999999999999995 4888874 57999999999999999995 79999999999999998
Q ss_pred CCCC
Q psy3994 231 GKGM 234 (282)
Q Consensus 231 ~~~~ 234 (282)
....
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 156
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=112.86 Aligned_cols=75 Identities=25% Similarity=0.369 Sum_probs=66.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCC--eeCCeeEEEEeecCCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNT--KLQGKTITLAWAPGKG 233 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~--~~~g~~l~v~~a~~~~ 233 (282)
.+++|||+|||.++++++|+++|++||.|.+++++. ++|||||+|.+.++|++| ++. .+.|++|+|.++.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCC
Confidence 469999999999999999999999999999999986 699999999999999754 444 4599999999998875
Q ss_pred CC
Q psy3994 234 MK 235 (282)
Q Consensus 234 ~~ 235 (282)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=4.2e-16 Score=124.79 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=88.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccC----C-------ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEY----G-------DVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~----G-------~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
++++|||+|||+++|+++|+++|++| | .|.++.+.+++|||||+|.+.++|++|+ .+||..+.|++|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 35899999999999999999999999 7 8899999999999999999999999999 8999999999999
Q ss_pred EEeecCCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCC
Q psy3994 226 LAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDT 276 (282)
Q Consensus 226 v~~a~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~ 276 (282)
|.++...........- -+..+|.+ .++++|..+++ .|.+....
T Consensus 82 v~~~~~~~~~~~~~~l------~v~nlp~~--~t~~~l~~~f~~~G~v~~v~ 125 (172)
T 2g4b_A 82 IRRPHDYQPLPGAHKL------FIGGLPNY--LNDDQVKELLTSFGPLKAFN 125 (172)
T ss_dssp EECCSSCCCCTTTTCE------EEECCCTT--CCHHHHHHHHHTTSCEEEEE
T ss_pred ecCCcccCCCCCCCEE------EEEcCCCc--CCHHHHHHHHHhcCCceEEE
Confidence 9998766433221111 14445553 35788887555 45554443
No 158
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.5e-16 Score=118.94 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=69.6
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCc---eEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGD---VVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~---i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
..++|||+|||+++|+++|+++|+.||. |..++++. ++|||||+|.+.++|++|+. +||..+.|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4689999999999999999999999999 88898874 58999999999999999999 999999999999999
Q ss_pred ecCC
Q psy3994 229 APGK 232 (282)
Q Consensus 229 a~~~ 232 (282)
+..+
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9754
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=2.9e-16 Score=128.42 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=86.0
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||+++|+++|+++|+.||.|.++.++. ++|||||+|.+.++|++|+.. +|..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3568999999999999999999999999999999884 478999999999999999986 999999999999999
Q ss_pred cCCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCCC
Q psy3994 230 PGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDTV 277 (282)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (282)
.++...............-+..+|.+ .++++|..+++ .|.+..+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i 136 (196)
T 1l3k_A 90 VSREDSQRPGAHLTVKKIFVGGIKED--TEEHHLRDYFEQYGKIEVIEI 136 (196)
T ss_dssp CC-----------CCSEEEEECCTTT--CCHHHHHHHHTTTSCEEEEEE
T ss_pred cCcccccccccCCCcceEEEeCCCCC--CCHHHHHHHHhcCCCeEEEEE
Confidence 87643321111100011113444544 36888887665 455554433
No 160
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-17 Score=125.35 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=72.5
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEE--------EEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVS--------INLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGK 222 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~--------~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~ 222 (282)
+.++|||+|||.++++++|+++|++||.|.. ++++. ++|||||+|.+.++|++|+..|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4689999999999999999999999999998 77764 579999999999999999999999999999
Q ss_pred eEEEEeecCCCCC
Q psy3994 223 TITLAWAPGKGMK 235 (282)
Q Consensus 223 ~l~v~~a~~~~~~ 235 (282)
+|+|.||+++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999887543
No 161
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.64 E-value=8.8e-16 Score=131.79 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=88.6
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMK 235 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 235 (282)
..+++|||||||+++|+++|+++|+.||.|.++.+.+++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~-- 97 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA-- 97 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS--
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC--
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999987531
Q ss_pred CCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCCC
Q psy3994 236 DKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDTV 277 (282)
Q Consensus 236 ~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (282)
.-+ +..+|.. .++++|+.++. .|.+..+.+
T Consensus 98 ----~l~------v~nl~~~--~t~~~l~~~F~~~G~i~~v~i 128 (261)
T 3sde_A 98 ----ALT------VKNLSPV--VSNELLEQAFSQFGPVEKAVV 128 (261)
T ss_dssp ----EEE------EESCCTT--CCHHHHHHHHGGGSCEEEEEE
T ss_pred ----ccc------ccCCCCC--CCHHHHHHHHHhcCCeEEEEe
Confidence 111 3344433 35788887555 455544433
No 162
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=121.72 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=68.6
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe------CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....++|||+|||+++|+++|+++|+.||.|..+.++ .++|||||+|.+.++|++|+. |||..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999998763333 258999999999999999999 999999999999999
Q ss_pred ecCC
Q psy3994 229 APGK 232 (282)
Q Consensus 229 a~~~ 232 (282)
|.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9764
No 163
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1e-16 Score=110.87 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=64.6
Q ss_pred EEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 160 ~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
+|||+|||+++++++|+++|++||.|.++.++. ++|||||+|.+.++|++|+.. +|..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999874 589999999999999999984 899999999999986
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=2.6e-16 Score=121.60 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCc---eEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGD---VVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~---i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
..++|||+|||+++|+++|+++|++||. |.+++++. ++|||||+|.+.++|++|++ +||..++|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4689999999999999999999999999 78888874 58999999999999999999 999999999999999
Q ss_pred ecCC
Q psy3994 229 APGK 232 (282)
Q Consensus 229 a~~~ 232 (282)
+.++
T Consensus 122 a~~~ 125 (136)
T 2hgl_A 122 SHRT 125 (136)
T ss_dssp CCHH
T ss_pred CChH
Confidence 8644
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=8.6e-16 Score=124.22 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=74.2
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
....+++|||+|||..+++++|+++|++||.|..|.+.. ++|||||+|.+.++|++|+..|||..+.|+.|+|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445679999999999999999999999999999999975 579999999999999999999999999999999999
Q ss_pred ecCCC
Q psy3994 229 APGKG 233 (282)
Q Consensus 229 a~~~~ 233 (282)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98654
No 166
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=2.1e-16 Score=116.12 Aligned_cols=75 Identities=25% Similarity=0.464 Sum_probs=70.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.+++|||+|||.++++++|+++|++||.|.+++++. ++|||||+|.+.++|++|+. +|..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 468999999999999999999999999999999985 57999999999999999998 99999999999999986
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=1.8e-15 Score=127.27 Aligned_cols=78 Identities=27% Similarity=0.397 Sum_probs=73.1
Q ss_pred CCCCcEEEecCCCc-cCcHHHHHhhhccCCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 155 NMCSTTLWIGHLSK-LVQEEELSDTFGEYGDVVSINLIPP-RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 155 ~~~~~~l~V~nl~~-~~te~~l~~~f~~~G~i~~~~~~~~-kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
..++++|||+|||+ ++++++|+++|++||.|.++++... +|||||+|.+.++|++|++.|||..+.|+.|+|.|++.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 34579999999999 9999999999999999999999874 699999999999999999999999999999999999865
No 168
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-16 Score=116.11 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=70.1
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCc---eEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGD---VVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~---i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
...++|||+|||+++|+++|+++|+.||. |..++++. ++|||||+|.+.++|++|+. +||..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35689999999999999999999999988 88998874 68999999999999999999 99999999999999
Q ss_pred eecCC
Q psy3994 228 WAPGK 232 (282)
Q Consensus 228 ~a~~~ 232 (282)
++.++
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98754
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.6e-16 Score=113.93 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=67.5
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.++|||+|||+++|+++|+++|+.| .|.++.++. ++|||||+|.+.++|++|+ .+||..++||.|.|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4799999999999999999999999 899999874 6899999999999999999 69999999999999888643
No 170
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=5e-16 Score=130.73 Aligned_cols=75 Identities=21% Similarity=0.394 Sum_probs=69.5
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCC--ceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYG--DVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G--~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
..++|||+|||+++|+++|+++|++|| .|.+|+|+. +||||||+|.+.++|++||..|||..+.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 468999999999999999999999999 999999874 579999999999999999999999999999999999
Q ss_pred ecC
Q psy3994 229 APG 231 (282)
Q Consensus 229 a~~ 231 (282)
|++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 171
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=123.64 Aligned_cols=76 Identities=28% Similarity=0.408 Sum_probs=71.7
Q ss_pred CCcEEEecCCCc-cCcHHHHHhhhccCCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 157 CSTTLWIGHLSK-LVQEEELSDTFGEYGDVVSINLIPP-RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 157 ~~~~l~V~nl~~-~~te~~l~~~f~~~G~i~~~~~~~~-kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.+++|||+|||+ .+++++|+++|++||.|.++++... +|||||+|.+.++|++|+..|||..+.|++|+|.|+..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 368999999999 9999999999999999999999874 699999999999999999999999999999999999865
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=2e-15 Score=120.98 Aligned_cols=114 Identities=23% Similarity=0.362 Sum_probs=87.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe--------CCCcEEEEEecCHHHHHHHHHHhCCCeeC---CeeEE
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI--------PPRGCAFVCMNRRQDAAKALYKLKNTKLQ---GKTIT 225 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~--------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 225 (282)
.+++|||+|||+++|+++|+++|++||.|.+++++ .++|||||+|.+.++|++|+..|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36899999999999999999999999999999987 35789999999999999999999998875 67889
Q ss_pred EEeecCCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCCC
Q psy3994 226 LAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDTV 277 (282)
Q Consensus 226 v~~a~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (282)
+.++.+......... ..-+..+|.+ .++++|+.+++ .|.+....+
T Consensus 82 ~~~~~~~~~~~~~~~-----~l~v~nl~~~--~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 82 MKPADSEKNNAVEDR-----KLFIGMISKK--CTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEECGGGCCSCGGGS-----EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEE
T ss_pred EccccccccccCCCC-----eEEEcCCCCc--CCHHHHHHHHHhCCCEEEEEE
Confidence 998876654321111 1113444544 36788887655 455554433
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=8.7e-16 Score=122.31 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=85.8
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
++++|||+|||+++|+++|+++|++||.|.+++++. ++|||||+|.+.++|++|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 368999999999999999999999999999999875 579999999999999999984 678999999999987
Q ss_pred CCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCCC
Q psy3994 231 GKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDTV 277 (282)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (282)
++...... ...-+..+|.+- ++++|..+++ .|.+....+
T Consensus 80 ~~~~~~~~------~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i 119 (167)
T 2cjk_A 80 PRDEQDKT------GKIFVGGIGPDV--RPKEFEEFFSQWGTIIDAQL 119 (167)
T ss_dssp CHHHHHHC------EEEEEEEECTTC--CHHHHHHHHHTTSCCSEEEC
T ss_pred chhhccCC------CeEEECCCCCCC--CHHHHHHHHHhCccEEEEEE
Confidence 65321111 112245566543 5788887555 455554444
No 174
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=3.8e-15 Score=121.86 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=74.1
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP------RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~------kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||..+++++|+++|++||.|.++.+... +|||||+|.+.++|.+|+..|||..+.|++|+|.||
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999998853 799999999999999999999999999999999999
Q ss_pred cCCCC
Q psy3994 230 PGKGM 234 (282)
Q Consensus 230 ~~~~~ 234 (282)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=4.7e-15 Score=124.76 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=73.1
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCC-ceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeecC
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYG-DVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQ-GKTITLAWAPG 231 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G-~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~a~~ 231 (282)
..++++|||+|||..+++++|+++|++|| .|..+++.+ ++|||||+|.+.++|.+|+..|||..+. |++|+|.|+++
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 34579999999999999999999999999 999999954 8999999999999999999999999999 99999999986
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=6.7e-15 Score=117.88 Aligned_cols=74 Identities=24% Similarity=0.495 Sum_probs=68.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeC---CeeEEEEe
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQ---GKTITLAW 228 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~---g~~l~v~~ 228 (282)
..++|||+|||..+|+++|+++|++||.|.++.++. ++|||||+|.+.++|.+|+..|||..+. |++|+|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 468999999999999999999999999999999986 3899999999999999999999998775 49999999
Q ss_pred ec
Q psy3994 229 AP 230 (282)
Q Consensus 229 a~ 230 (282)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=4.8e-15 Score=121.27 Aligned_cols=75 Identities=17% Similarity=0.383 Sum_probs=70.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccC----C-------ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEY----G-------DVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~----G-------~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
.+++|||+|||+++|+++|+++|++| | .|.++.+..++|||||+|.+.++|++|+ .|||..+.|++|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 6 7888999899999999999999999999 8999999999999
Q ss_pred EEeecCC
Q psy3994 226 LAWAPGK 232 (282)
Q Consensus 226 v~~a~~~ 232 (282)
|.++...
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9999865
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=4.1e-15 Score=119.43 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=69.5
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEe--CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI--PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~--~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
..++|||+|||..+++++|+++|++||.|..+ .. .++|||||+|.+.++|.+|+..|||..+.|++|+|.||.++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 46899999999999999999999999999887 22 37899999999999999999999999999999999999876
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=8.2e-15 Score=116.66 Aligned_cols=110 Identities=30% Similarity=0.545 Sum_probs=86.1
Q ss_pred hhcCChhhHHHHHHHHHhhc-cCcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHHHHH
Q psy3994 98 LYQCPPEDKSKIIRVLNLWQ-KNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELS 176 (282)
Q Consensus 98 v~~~~~~~~~k~~~~l~~w~-~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~~l~ 176 (282)
+...+++++.+++..++... .+..+.. .++.+. ......++|||+|||..+++++|+
T Consensus 50 V~f~~~~~A~~a~~~l~~~~~~g~~l~v-------~~~~~~---------------~~~~~~~~l~v~nl~~~~t~~~l~ 107 (168)
T 1b7f_A 50 VDFTSEMDSQRAIKVLNGITVRNKRLKV-------SYARPG---------------GESIKDTNLYVTNLPRTITDDQLD 107 (168)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEE-------EECCCC---------------SSTTTTCEEEEESCCTTCCHHHHH
T ss_pred EEECCHHHHHHHHHhcCCCEeCCcEEEE-------EecCCC---------------cccCCCCCEEEeCCCCCCCHHHHH
Confidence 33356888888988877332 2222222 122222 122346899999999999999999
Q ss_pred hhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEee
Q psy3994 177 DTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQG--KTITLAWA 229 (282)
Q Consensus 177 ~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g--~~l~v~~a 229 (282)
++|++||.|..+.+.. ++|||||+|.+.++|.+|+..|||..+.| ++|+|.||
T Consensus 108 ~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 108 TIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999875 35999999999999999999999999987 99999986
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=4.2e-15 Score=121.94 Aligned_cols=77 Identities=25% Similarity=0.367 Sum_probs=72.7
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCC-ceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeecCC
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYG-DVVSINLIP-PRGCAFVCMNRRQDAAKALYKLKNTKLQ-GKTITLAWAPGK 232 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G-~i~~~~~~~-~kg~aFV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~a~~~ 232 (282)
.++++|||+|||..+++++|+++|++|| .|.++++.+ ++|||||+|.+.++|.+|+..|||..++ |++|+|.|++++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4589999999999999999999999999 999999954 8999999999999999999999999999 999999999864
No 181
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=6.5e-16 Score=119.78 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
...++|||+|||+++|+++|+++|++|| +.+|.++. ++|||||+|.+.++|++|+ .+|+..+.|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3468999999999999999999999999 67998874 6899999999999999999 789999999999999998
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++...
T Consensus 122 ~~~~~ 126 (139)
T 2hgn_A 122 TTGAS 126 (139)
T ss_dssp CSCC-
T ss_pred CCCCC
Confidence 77543
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=5.7e-15 Score=127.97 Aligned_cols=151 Identities=11% Similarity=0.101 Sum_probs=107.4
Q ss_pred HHHhhcCChhhHHHHHHHHHhhc-cCcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHH
Q psy3994 95 FQHLYQCPPEDKSKIIRVLNLWQ-KNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEE 173 (282)
Q Consensus 95 f~~v~~~~~~~~~k~~~~l~~w~-~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~ 173 (282)
+.++...+++++.+++..++... .+..+... +.. ..++|||+|||+.++++
T Consensus 59 ~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~-------~~~---------------------~~~~l~v~nlp~~~t~~ 110 (284)
T 3smz_A 59 TAFVTLLNGEQAEAAINAFHQSRLRERELSVQ-------LQP---------------------TDALLCVANLPPSLTQQ 110 (284)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEE-------ECC---------------------CSCEEEEESCCTTCCHH
T ss_pred EEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE-------ecC---------------------CCCEEEEcCCCCcCCHH
Confidence 33444467888888988887322 22221111 111 24899999999999999
Q ss_pred HHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCCCCccccccccCC
Q psy3994 174 ELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQD 247 (282)
Q Consensus 174 ~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~ 247 (282)
+|+++|++||.|.++.++. ++|||||+|.+.++|.+|+..|||..+.|++|+|.|+.++........ ....
T Consensus 111 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~---~~~l 187 (284)
T 3smz_A 111 QFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLH---SRCL 187 (284)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTS---CSEE
T ss_pred HHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCC---ccEE
Confidence 9999999999999998874 478999999999999999999999999999999999987654322111 0111
Q ss_pred CeeeecCCCCCcchhhhhhhc-CcccccCCC
Q psy3994 248 GVSYIPYDRLSKEIDYDYLED-GGVFDEDTV 277 (282)
Q Consensus 248 g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (282)
-+..+|.+-. ++++|+.+++ .|.+..+.+
T Consensus 188 ~v~nlp~~~~-~~~~l~~~f~~~G~i~~v~i 217 (284)
T 3smz_A 188 CVDRLPPGFN-DVDALCRALSAVHSPTFCQL 217 (284)
T ss_dssp EEECCCTTCC-CHHHHHHHTCSSSCCSEEEE
T ss_pred EEecCCcccC-CHHHHHHHhhCCCCeEEEEE
Confidence 2445555533 5788888665 455544433
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=2e-15 Score=123.35 Aligned_cols=79 Identities=23% Similarity=0.433 Sum_probs=68.9
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||..+|+++|+++|++||.|..+.+.. ++|||||+|.+.++|.+|+.. +|..+.|+.|.|.||
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999884 479999999999999999986 899999999999999
Q ss_pred cCCCCC
Q psy3994 230 PGKGMK 235 (282)
Q Consensus 230 ~~~~~~ 235 (282)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 987543
No 184
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=5.3e-15 Score=135.68 Aligned_cols=77 Identities=23% Similarity=0.449 Sum_probs=72.4
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
+.++|||+|||..+|+++|..+|++||.|..|.|+. ++|||||+|.+.++|.+||..|||..|.|+.|.|.||.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 468999999999999999999999999999999974 58999999999999999999999999999999999998
Q ss_pred CCC
Q psy3994 231 GKG 233 (282)
Q Consensus 231 ~~~ 233 (282)
++.
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 754
No 185
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=5.2e-15 Score=118.34 Aligned_cols=74 Identities=20% Similarity=0.389 Sum_probs=69.7
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP------RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~------kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||..+++++|+++|++||.|.++.+... +|||||+|.+.++|.+|+..|||..++|++|+|.||.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 3689999999999999999999999999999999753 7999999999999999999999999999999999983
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=6.3e-15 Score=122.24 Aligned_cols=79 Identities=15% Similarity=0.343 Sum_probs=73.5
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP------RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~------kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
..++|||+|||..+++++|+++|++||.|..+++... +|||||+|.+.++|.+|+..|||..++|+.|+|.||.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 4589999999999999999999999999999999853 7999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy3994 231 GKGMK 235 (282)
Q Consensus 231 ~~~~~ 235 (282)
++...
T Consensus 204 ~~~~~ 208 (216)
T 2qfj_A 204 TPPMP 208 (216)
T ss_dssp SCSST
T ss_pred CCCCC
Confidence 87543
No 187
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=4.6e-15 Score=123.03 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=87.6
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
+++|||+|||.++|+++|+++|+.||.|.+++++. ++|||||+|.+.++|++|+..|||..+.|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 58999999999999999999999999999999974 589999999999999999999999999999999999876
Q ss_pred CCCCCCccc---cccccCCC--eeeecCCCCCcchhhhhhhc-CcccccCCC
Q psy3994 232 KGMKDKDWK---DFWEVQDG--VSYIPYDRLSKEIDYDYLED-GGVFDEDTV 277 (282)
Q Consensus 232 ~~~~~~~~~---~~~~~~~g--~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~ 277 (282)
......... ........ +..+|.+ .++++|..+++ .|.+..+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i 157 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQD--LSDDDIKSVFEAFGKIKSATL 157 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTT--CCHHHHHHHHTTSSCEEEEEE
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCc--CCHHHHHHHHhccCCeeEEEE
Confidence 642210000 00001111 3444544 46888887665 455554433
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=1.3e-14 Score=115.26 Aligned_cols=110 Identities=26% Similarity=0.491 Sum_probs=85.1
Q ss_pred hhcCChhhHHHHHHHHHhhcc-CcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHHHHH
Q psy3994 98 LYQCPPEDKSKIIRVLNLWQK-NEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELS 176 (282)
Q Consensus 98 v~~~~~~~~~k~~~~l~~w~~-~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~~l~ 176 (282)
+....++++.++++.++...- +..+.. .++.+.. .....++|||+|||..+++++|+
T Consensus 49 V~f~~~~~A~~a~~~l~~~~~~g~~l~v-------~~~~~~~---------------~~~~~~~l~v~nl~~~~t~~~l~ 106 (167)
T 1fxl_A 49 VNYIDPKDAEKAINTLNGLRLQTKTIKV-------SYARPSS---------------ASIRDANLYVSGLPKTMTQKELE 106 (167)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEE-------EECCCCC---------------GGGTTCEEEEESCCTTCCHHHHH
T ss_pred EEECCHHHHHHHHHHcCCCccCCceEEE-------EecCCCc---------------ccCCCCcEEECCCCCcCCHHHHH
Confidence 333568888999988874322 222111 2223221 11245899999999999999999
Q ss_pred hhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCee--EEEEee
Q psy3994 177 DTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKT--ITLAWA 229 (282)
Q Consensus 177 ~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~--l~v~~a 229 (282)
++|++||.|..+++.. ++|||||+|.+.++|.+|+..|||..+.|+. |+|.||
T Consensus 107 ~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 107 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999874 3799999999999999999999999999975 899886
No 189
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=3.3e-15 Score=118.90 Aligned_cols=74 Identities=18% Similarity=0.406 Sum_probs=69.8
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.++|||+|||..+++++|+++|++||.|.++.+.. ++|||||+|.+.++|.+|++ ++|..++|++|+|.||.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 57999999999999999999999999999999875 57899999999999999998 899999999999999987
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.2e-14 Score=125.83 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=72.3
Q ss_pred CCCCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCC-cEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeec
Q psy3994 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR-GCAFVCMNRRQDAAKALYKLKNTKLQ-GKTITLAWAP 230 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~k-g~aFV~f~~~~~A~~Ai~~l~g~~~~-g~~l~v~~a~ 230 (282)
...++++|||+|||..+++++|+++|++||.|.++++...+ |||||+|.+.++|.+|+..|||..+. |+.|+|.||+
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 34467899999999999999999999999999999999855 99999999999999999999999998 9999999986
No 191
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.9e-14 Score=106.17 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCCcEEEecCCCc-----cCcHHHHHhhhccCCceEEEEEeC-------CCcEEEEEecCHHHHHHHHHHhCCCeeCCee
Q psy3994 156 MCSTTLWIGHLSK-----LVQEEELSDTFGEYGDVVSINLIP-------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKT 223 (282)
Q Consensus 156 ~~~~~l~V~nl~~-----~~te~~l~~~f~~~G~i~~~~~~~-------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~ 223 (282)
.++++|++.|+.. +-++++|++.|++||.|.++.++. ++|||||+|.+.++|.+|+..|||..+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999973 236899999999999999999873 4899999999999999999999999999999
Q ss_pred EEEEeecCC
Q psy3994 224 ITLAWAPGK 232 (282)
Q Consensus 224 l~v~~a~~~ 232 (282)
|+|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999753
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=1e-14 Score=126.85 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=89.2
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCC-ceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYG-DVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G-~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.++|||+|||+.+++++|+++|+.|| .|.++.++. ++|||||+|.+.++|.+|+..|||..+.|++|.|.|+.+
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 58999999999999999999999999 999999875 689999999999999999999999999999999999987
Q ss_pred CCCCCCc-cccccccCCCeeeecCCCCCcchhhhhhhc-CcccccCCCC
Q psy3994 232 KGMKDKD-WKDFWEVQDGVSYIPYDRLSKEIDYDYLED-GGVFDEDTVP 278 (282)
Q Consensus 232 ~~~~~~~-~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~p 278 (282)
.....+. .........-+..+|.+.+ ++++|..+++ .|.+....++
T Consensus 197 ~~~~~~~~~~~~~~~~l~v~nlp~~~~-t~~~l~~~F~~~G~v~~v~i~ 244 (292)
T 2ghp_A 197 LEKSKRTDSATLEGREIMIRNLSTELL-DENLLRESFEGFGSIEKINIP 244 (292)
T ss_dssp C---------CCTTTEEEEEEECTTTC-CHHHHHHHHGGGSCEEEEECC
T ss_pred CcccccccccCCCCceEEEECCCcccC-CHHHHHHHHhccCCeeEEEEE
Confidence 7543322 0111011112456666634 6788887665 4555555443
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.9e-14 Score=106.51 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=69.1
Q ss_pred CCCCcEEEecCCCccC-----------cHHHHHhhhccCCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3994 155 NMCSTTLWIGHLSKLV-----------QEEELSDTFGEYGDVVSINLIP--PRGCAFVCMNRRQDAAKALYKLKNTKLQG 221 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~-----------te~~l~~~f~~~G~i~~~~~~~--~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g 221 (282)
..++++|+|.||.... ++++|+++|++||.|.++.+.. ++|||||+|.+.++|++|+..|||..+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3457999999995432 2579999999999999997753 68999999999999999999999999999
Q ss_pred eeEEEEeecCCC
Q psy3994 222 KTITLAWAPGKG 233 (282)
Q Consensus 222 ~~l~v~~a~~~~ 233 (282)
++|+|.|+.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998764
No 194
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=6.2e-15 Score=112.20 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=67.1
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceE--EEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVV--SINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~--~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
...++|||+|||+++|+++|+++|++| .|. +|+++. ++|||||+|.+.++|++|+. +++..++||.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346899999999999999999999999 576 888874 68999999999999999998 478999999999999
Q ss_pred ecCC
Q psy3994 229 APGK 232 (282)
Q Consensus 229 a~~~ 232 (282)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=1.7e-14 Score=124.84 Aligned_cols=78 Identities=23% Similarity=0.436 Sum_probs=72.5
Q ss_pred CCCcEEEecCCCccCcHHHHH----hhhccCCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q psy3994 156 MCSTTLWIGHLSKLVQEEELS----DTFGEYGDVVSINLIP---PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~----~~f~~~G~i~~~~~~~---~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 228 (282)
.++++|||+|||.++++++|+ ++|++||.|.+|++.+ ++|||||+|.+.++|++|+..|||..+.|+.|+|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 357999999999999999977 8999999999999875 789999999999999999999999999999999999
Q ss_pred ecCCC
Q psy3994 229 APGKG 233 (282)
Q Consensus 229 a~~~~ 233 (282)
++.+.
T Consensus 87 a~~~~ 91 (282)
T 3pgw_A 87 AKTDS 91 (282)
T ss_pred eccCc
Confidence 98654
No 196
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=113.65 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=67.2
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCce----EEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDV----VSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i----~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
..++|||+|||+++|+++|+++|++||.| ..|.++. ++|||||+|.+.++|++|+.. |+..+.||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45899999999999999999999999875 5777763 689999999999999999986 9999999999999
Q ss_pred eecCC
Q psy3994 228 WAPGK 232 (282)
Q Consensus 228 ~a~~~ 232 (282)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88644
No 197
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.7e-15 Score=109.70 Aligned_cols=74 Identities=20% Similarity=0.388 Sum_probs=63.8
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP---------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITL 226 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~---------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v 226 (282)
..+++|||||||+++++++|+++|++||.|. +.++. ++|||||+|.+.++|++|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3468999999999999999999999999999 76653 48999999999999999999984 478888888
Q ss_pred EeecCC
Q psy3994 227 AWAPGK 232 (282)
Q Consensus 227 ~~a~~~ 232 (282)
..+...
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 765543
No 198
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=2.2e-14 Score=124.22 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=73.5
Q ss_pred CCCcEEEecCCCccC-cHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 156 MCSTTLWIGHLSKLV-QEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~-te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
...++|||+|||..+ ++++|+++|+.||.|.++++.. ++|||||+|.+.++|.+|+..|||..++|++|+|.|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 456899999999995 9999999999999999999886 4899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy3994 230 PGKGM 234 (282)
Q Consensus 230 ~~~~~ 234 (282)
.++..
T Consensus 262 ~~~~~ 266 (284)
T 3smz_A 262 APGPP 266 (284)
T ss_dssp CSSSC
T ss_pred cCCCc
Confidence 88764
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=2.9e-14 Score=114.40 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=81.3
Q ss_pred CCCcEEEecCCCccCcHHHHHhhhccCCceE-----EEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVV-----SINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~te~~l~~~f~~~G~i~-----~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
...++|||+|||.++|+++|+++|..||.+. ......++|||||+|.+.++|++|+ .|||..+.|++|+|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 3579999999999999999999999998543 3444458999999999999999999 599999999999999998
Q ss_pred CCCCCCCccccccccCCCeeeecCCCCCcchhhhhhhc
Q psy3994 231 GKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLED 268 (282)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~ 268 (282)
++........ ...-+..+|.+ .++++|+.+++
T Consensus 90 ~~~~~~~~~~----~~l~v~nlp~~--~t~~~l~~~F~ 121 (175)
T 1fje_B 90 GRDSKKVRAA----RTLLAKNLSFN--ITEDELKEVFE 121 (175)
T ss_dssp CSSCSTTGGG----GEEEEESCCSS--CCHHHHHHHCT
T ss_pred CccccccccC----CEEEEeCCCCC--CCHHHHHHHHH
Confidence 7654322110 11123444543 35788887665
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=2.1e-14 Score=124.84 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=72.0
Q ss_pred CCCCCcEEEecCCCcc-CcHHHHHhhhccCCceEEEEEeC-------CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q psy3994 154 ENMCSTTLWIGHLSKL-VQEEELSDTFGEYGDVVSINLIP-------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTIT 225 (282)
Q Consensus 154 ~~~~~~~l~V~nl~~~-~te~~l~~~f~~~G~i~~~~~~~-------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 225 (282)
.....++|||+|||.. +++++|+++|++||.|..++++. ++|||||+|.+.++|.+|+ .|||..+.|++|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3446789999999999 99999999999999999999864 4799999999999999999 9999999999999
Q ss_pred EEeecCC
Q psy3994 226 LAWAPGK 232 (282)
Q Consensus 226 v~~a~~~ 232 (282)
|.||.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999876
No 201
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.5e-15 Score=110.03 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=65.1
Q ss_pred cEEEecCC----CccCcHHHHHhhhccCCceEEEEEeC------CCcEEEEEecC----HHH----HHHHHH--HhCCCe
Q psy3994 159 TTLWIGHL----SKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNR----RQD----AAKALY--KLKNTK 218 (282)
Q Consensus 159 ~~l~V~nl----~~~~te~~l~~~f~~~G~i~~~~~~~------~kg~aFV~f~~----~~~----A~~Ai~--~l~g~~ 218 (282)
+.|||||| |+.+++.+|+.+|++||+|.++.++. ++|||||+|.+ .++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999984 78999999996 323 889988 789999
Q ss_pred eCCeeEEEEeecC
Q psy3994 219 LQGKTITLAWAPG 231 (282)
Q Consensus 219 ~~g~~l~v~~a~~ 231 (282)
++|++|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 202
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=2.4e-14 Score=117.36 Aligned_cols=74 Identities=14% Similarity=0.267 Sum_probs=67.8
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.++|||+|||+++|+++|+++|++||.|.++++++ ++|||||+|.+.++|++|+..+ +..+.|++|+|.|+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 48999999999999999999999999999999884 6899999999999999999865 46999999999998754
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=9.9e-14 Score=122.66 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=68.2
Q ss_pred CCCCcEEEecC--CCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCee---CCe--eEEEE
Q psy3994 155 NMCSTTLWIGH--LSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKL---QGK--TITLA 227 (282)
Q Consensus 155 ~~~~~~l~V~n--l~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~---~g~--~l~v~ 227 (282)
+.++.+||||| |+..+||++|+++|++||+|.++.+..+||||||+|.+.++|++|++.|||..+ .|+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 34578999999 578999999999999999999999999999999999999999999999999988 345 67888
Q ss_pred eec
Q psy3994 228 WAP 230 (282)
Q Consensus 228 ~a~ 230 (282)
++.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 875
No 204
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=6.9e-14 Score=115.68 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=67.4
Q ss_pred CCCCcEEEecCCCccCcHHHHHhhhccCCce--EEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCCeeCCe----eE
Q psy3994 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDV--VSINLIPP----RGCAFVCMNRRQDAAKALYKLKNTKLQGK----TI 224 (282)
Q Consensus 155 ~~~~~~l~V~nl~~~~te~~l~~~f~~~G~i--~~~~~~~~----kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~----~l 224 (282)
..++++|||+|||+.+|+++|+++|++||.| .++++... +|||||+|.+.++|.+|+..|||..+.|+ ++
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 3567899999999999999999999999999 89988753 58999999999999999999999999876 67
Q ss_pred EEEee
Q psy3994 225 TLAWA 229 (282)
Q Consensus 225 ~v~~a 229 (282)
.|+||
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77775
No 205
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=3.1e-13 Score=99.62 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=67.1
Q ss_pred CCCcEEEecCCC--ccCc--------HHHHHhhhccCCceEEEEEeC--------CCcEEEEEecCHHHHHHHHHHhCCC
Q psy3994 156 MCSTTLWIGHLS--KLVQ--------EEELSDTFGEYGDVVSINLIP--------PRGCAFVCMNRRQDAAKALYKLKNT 217 (282)
Q Consensus 156 ~~~~~l~V~nl~--~~~t--------e~~l~~~f~~~G~i~~~~~~~--------~kg~aFV~f~~~~~A~~Ai~~l~g~ 217 (282)
.+++.|.+.|+- .... +++|++.|++||.|.++.+++ ++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 357899999983 3332 368999999999999999984 4799999999999999999999999
Q ss_pred eeCCeeEEEEeecCC
Q psy3994 218 KLQGKTITLAWAPGK 232 (282)
Q Consensus 218 ~~~g~~l~v~~a~~~ 232 (282)
.++||+|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998754
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8e-13 Score=96.37 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=58.4
Q ss_pred ccCcHHHHHhhhccCCceEEEEEe-CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCC
Q psy3994 168 KLVQEEELSDTFGEYGDVVSINLI-PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234 (282)
Q Consensus 168 ~~~te~~l~~~f~~~G~i~~~~~~-~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 234 (282)
..+++++|+++|++||.|.++.++ .++|||||+|.+.++|+.|+..+++ +.|++|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999998 4899999999999999999998554 6899999999987753
No 207
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=8.8e-14 Score=102.45 Aligned_cols=68 Identities=26% Similarity=0.439 Sum_probs=61.0
Q ss_pred EecCCCccCcHHHHHhhh------------ccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q psy3994 162 WIGHLSKLVQEEELSDTF------------GEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTI 224 (282)
Q Consensus 162 ~V~nl~~~~te~~l~~~f------------~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l 224 (282)
.++|||..+++++|++.| ++||.|.++.+++ ++|||||+|.+.++|++|+..|||..+.||+|
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 367888888888887777 9999999999985 48999999999999999999999999999999
Q ss_pred EEEee
Q psy3994 225 TLAWA 229 (282)
Q Consensus 225 ~v~~a 229 (282)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 208
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=3.2e-13 Score=115.72 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=68.4
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhC-CCeeC---CeeEEEEe
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAAKALYKLK-NTKLQ---GKTITLAW 228 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~-----~kg~aFV~f~~~~~A~~Ai~~l~-g~~~~---g~~l~v~~ 228 (282)
+++|||+|||..+|+++|+++|+.||.|.++.++. ++|||||+|.+.++|.+|+..|| |..+. |++|.|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 47999999999999999999999999999999885 48999999999999999999995 44554 99999999
Q ss_pred ecCCC
Q psy3994 229 APGKG 233 (282)
Q Consensus 229 a~~~~ 233 (282)
+.+..
T Consensus 176 ~~~~~ 180 (261)
T 3sde_A 176 MEQFD 180 (261)
T ss_dssp CCCEE
T ss_pred ccccC
Confidence 98653
No 209
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=2.8e-12 Score=95.77 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCCcEEEecCCCccC----------cHHHHHhhhccCCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCCeeCCee
Q psy3994 156 MCSTTLWIGHLSKLV----------QEEELSDTFGEYGDVVSINLIP--PRGCAFVCMNRRQDAAKALYKLKNTKLQGKT 223 (282)
Q Consensus 156 ~~~~~l~V~nl~~~~----------te~~l~~~f~~~G~i~~~~~~~--~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~ 223 (282)
.+++.|.+.|+-..- -+++|++.|++||.|.++.+.+ ++|||||+|.+.++|.+|++.|||..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356788888875321 1357999999999999999986 4799999999999999999999999999999
Q ss_pred EEEEeecCC
Q psy3994 224 ITLAWAPGK 232 (282)
Q Consensus 224 l~v~~a~~~ 232 (282)
|+|.|+...
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998643
No 210
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=2.6e-12 Score=96.62 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCcEEEecCCCc--cC---cHHHHHhhhccCCceEEEEEeC----------CCcEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy3994 157 CSTTLWIGHLSK--LV---QEEELSDTFGEYGDVVSINLIP----------PRGCAFVCMNRRQDAAKALYKLKNTKLQG 221 (282)
Q Consensus 157 ~~~~l~V~nl~~--~~---te~~l~~~f~~~G~i~~~~~~~----------~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g 221 (282)
++++|++.|+-. .+ -+++|++.|++||.|.++.++. ++||+||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468999999852 22 3588999999999999999875 24899999999999999999999999999
Q ss_pred eeEEEEeecC
Q psy3994 222 KTITLAWAPG 231 (282)
Q Consensus 222 ~~l~v~~a~~ 231 (282)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 211
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-11 Score=85.76 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=64.5
Q ss_pred CCCcEEEecCCCc----cCcH----HHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 156 MCSTTLWIGHLSK----LVQE----EELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 156 ~~~~~l~V~nl~~----~~te----~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
++..||+|...+. ++-. .+|.+.|.+||+|..+++...+ +||+|.+.++|.+|+. |||..+.||.|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 3458898987662 2323 6799999999999999999855 8999999999999998 99999999999999
Q ss_pred eecCCCC
Q psy3994 228 WAPGKGM 234 (282)
Q Consensus 228 ~a~~~~~ 234 (282)
++++...
T Consensus 82 lkt~dW~ 88 (91)
T 2dnr_A 82 LKSPSGP 88 (91)
T ss_dssp ECCCSSC
T ss_pred eCCCCcc
Confidence 9987653
No 212
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.2e-10 Score=87.13 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=69.2
Q ss_pred CCCcEEEecCCCcc-CcHHHHHhhhccCCceEEEEEeCCCcEEEEEecC-HHHHHHHHHHhC--CCeeCCeeEEEEeecC
Q psy3994 156 MCSTTLWIGHLSKL-VQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNR-RQDAAKALYKLK--NTKLQGKTITLAWAPG 231 (282)
Q Consensus 156 ~~~~~l~V~nl~~~-~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~-~~~A~~Ai~~l~--g~~~~g~~l~v~~a~~ 231 (282)
+.++.|||+||++. +++++|+++|++||+|..|.+......|||.|.+ .++|..|+..+| |..+.|..++++...+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 45799999999999 9999999999999999999999988899999999 899999999995 6678898888877664
Q ss_pred C
Q psy3994 232 K 232 (282)
Q Consensus 232 ~ 232 (282)
.
T Consensus 96 e 96 (121)
T 1owx_A 96 E 96 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 213
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=3.6e-10 Score=79.94 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=61.5
Q ss_pred CCcEEEecCCCcc-----C-cH---HHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q psy3994 157 CSTTLWIGHLSKL-----V-QE---EELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLA 227 (282)
Q Consensus 157 ~~~~l~V~nl~~~-----~-te---~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~ 227 (282)
+..||+|..+++. + ++ .+|.+.|.+||+|..+++...+ +||+|.+.++|.+|+. |||..+.||.|+|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKIS 90 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEEe
Confidence 4489999988742 2 32 5699999999999999999866 9999999999999998 99999999999999
Q ss_pred eec
Q psy3994 228 WAP 230 (282)
Q Consensus 228 ~a~ 230 (282)
+-.
T Consensus 91 ~k~ 93 (95)
T 1ufw_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 854
No 214
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=7.2e-09 Score=86.27 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=56.3
Q ss_pred cHHHHHhhhccCCceEEEEEe----------CCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 171 QEEELSDTFGEYGDVVSINLI----------PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 171 te~~l~~~f~~~G~i~~~~~~----------~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
.+++|++.|++||.|.++.++ +++|++||+|.+.++|.+|+..|||..++||.|+|.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 457899999999999999997 4679999999999999999999999999999999999763
No 215
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.4e-07 Score=68.12 Aligned_cols=72 Identities=25% Similarity=0.231 Sum_probs=67.5
Q ss_pred CcEEEecCCCccCcHHHHHhhhccC-----CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEY-----GDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~-----G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 229 (282)
.++|-+-|||+.+++..++.+.+++ |.+..+.+.+..+-|+|+|.+...|-+|.-.|+|.++.|++|+|.-.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 4789999999999999999999999 99999999998899999999999999999999999999999998643
No 216
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=1.9e-05 Score=56.74 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=65.7
Q ss_pred CcEEEecCCCccC-cH----HHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q psy3994 158 STTLWIGHLSKLV-QE----EELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 158 ~~~l~V~nl~~~~-te----~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 232 (282)
.++|+|.||+..+ .. +.++.+|..|+++......++-.-.-|.|.+.++|.+|-..||+..+.|+.++|-+|.+-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 3689999999865 32 467899999999999888887667799999999999999999999999999999999854
No 217
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.0012 Score=47.10 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=62.7
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccC-----CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEY-----GDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPG 231 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~-----G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 231 (282)
...+|.|.|||+.++++.|.-+|+.- |+|.++.... +-|+|+|.+.+.|++.++. ..+.+.|.+|.|.-..+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 46899999999999999999999872 6899998877 7899999999999999863 36788899999977655
Q ss_pred CC
Q psy3994 232 KG 233 (282)
Q Consensus 232 ~~ 233 (282)
+.
T Consensus 84 ~~ 85 (104)
T 2dhx_A 84 RA 85 (104)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0026 Score=46.85 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=60.0
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCC-eeEEEEeec
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQG-KTITLAWAP 230 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g-~~l~v~~a~ 230 (282)
.+.|-|-+.|+.. -..+.+.|++||+|.+........+-.|.|.++.+|++|+. .||..++| -.|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 5788898999885 46677899999999999886677899999999999999998 59999975 667777754
No 219
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.05 E-value=0.0031 Score=44.52 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=44.3
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLK 215 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~ 215 (282)
.+.+++ +.|+.+...||.++|+.||.|. |+.+ +-.-|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEE-ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 356666 9999999999999999998543 3333 23679999999999999998763
No 220
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.98 E-value=0.0061 Score=42.75 Aligned_cols=61 Identities=10% Similarity=0.156 Sum_probs=52.6
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeC--------CCcEEEEEecCHHHHHHHHHHhCCCee
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP--------PRGCAFVCMNRRQDAAKALYKLKNTKL 219 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~--------~kg~aFV~f~~~~~A~~Ai~~l~g~~~ 219 (282)
++|-|.+||+++||+++.+.++..+.+....... .-.-|+|.|.+.+++..-.+.++|+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 5788999999999999999999998877666553 225789999999999999999999977
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.94 E-value=0.00055 Score=52.75 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=36.2
Q ss_pred CCcEEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeecCC
Q psy3994 193 PRGCAFVCMNRRQDAAKALYKL-KNTKLQGKTITLAWAPGK 232 (282)
Q Consensus 193 ~kg~aFV~f~~~~~A~~Ai~~l-~g~~~~g~~l~v~~a~~~ 232 (282)
-+|+++|+|.+.++|++|+..+ ||..+.| .+++.++.++
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 5799999999999999999999 9999999 9999998763
No 222
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.56 E-value=0.0037 Score=44.24 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=43.9
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhC
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLK 215 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~ 215 (282)
+.+++ +.|+.+...+|.++|+.||. ..|+.+. -.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994 3344332 3679999999999999999775
No 223
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.46 E-value=0.0021 Score=49.80 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=22.8
Q ss_pred CCcEEEEEecCHHHHHHHHHHhCCC
Q psy3994 193 PRGCAFVCMNRRQDAAKALYKLKNT 217 (282)
Q Consensus 193 ~kg~aFV~f~~~~~A~~Ai~~l~g~ 217 (282)
.+|||||+|.+.++|++|+..+++.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhccc
Confidence 7899999999999999999888754
No 224
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.29 E-value=0.0045 Score=46.23 Aligned_cols=71 Identities=11% Similarity=0.226 Sum_probs=55.4
Q ss_pred cEEEecCCCccCcHHHHHhhhccCCceEE-EEEe----------------C---CCcEEEEEecCHHHHHHHHHHhCCCe
Q psy3994 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVS-INLI----------------P---PRGCAFVCMNRRQDAAKALYKLKNTK 218 (282)
Q Consensus 159 ~~l~V~nl~~~~te~~l~~~f~~~G~i~~-~~~~----------------~---~kg~aFV~f~~~~~A~~Ai~~l~g~~ 218 (282)
+.|.|-+.|+..+ ..+-+.|++||.|.+ .... + ..++--|+|.++.+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 5677878887765 456778999999876 2111 1 35677999999999999998 59999
Q ss_pred eCCeeEEEEeecC
Q psy3994 219 LQGKTITLAWAPG 231 (282)
Q Consensus 219 ~~g~~l~v~~a~~ 231 (282)
++|..|-|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887754
No 225
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.47 E-value=0.061 Score=37.95 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=49.0
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeC--------CCcEEEEEecCHHHHHHHHHHhCCCee
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP--------PRGCAFVCMNRRQDAAKALYKLKNTKL 219 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~--------~kg~aFV~f~~~~~A~~Ai~~l~g~~~ 219 (282)
+-+|.|..||+.+||+++.+.++..-++....... .-.-|+|.|.+.++...-.+.++|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 45799999999999999999888765543333222 124689999999999999999999987
No 226
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.46 E-value=0.0072 Score=55.13 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=42.0
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCC-cEEEEEecCHHHHHHHHH
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR-GCAFVCMNRRQDAAKALY 212 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~k-g~aFV~f~~~~~A~~Ai~ 212 (282)
.++|+|. .|..+++.+|.++|++||.|.++.+-..+ .||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 3789997 79999999999999999999999888755 489999999999887754
No 227
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=91.71 E-value=0.029 Score=40.88 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=19.8
Q ss_pred HHHhhcCChhhHHHHHHHHHh-hccCcccCCccccccccCCCCCCCChhhhHHhhhcCCCCCCCCcEEEecCCCccCcHH
Q psy3994 95 FQHLYQCPPEDKSKIIRVLNL-WQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEE 173 (282)
Q Consensus 95 f~~v~~~~~~~~~k~~~~l~~-w~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te~ 173 (282)
|.++.....++++++++.++. ...++.+.+.. +.+..+.. ..........++|||+|||+++|++
T Consensus 47 ~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~-------a~~~~~~~-------~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 47 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR-------FKSRKERE-------AELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECEEEE-------SSCCCC----------------------------------
T ss_pred eEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE-------CCCccccc-------cccccccCCCCceEeCCCCCCcccc
Confidence 444444678999999998873 22333333332 22110000 0011223345789999999999876
Q ss_pred H
Q psy3994 174 E 174 (282)
Q Consensus 174 ~ 174 (282)
.
T Consensus 113 a 113 (115)
T 4f25_A 113 A 113 (115)
T ss_dssp -
T ss_pred c
Confidence 3
No 228
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.12 E-value=0.7 Score=35.87 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=73.2
Q ss_pred HHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCch
Q psy3994 6 TFNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFG 84 (282)
Q Consensus 6 ~f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~ 84 (282)
.|+..+...+....+ ..-.-|.+++...-..-...+..+..|.+.|+...|...+-.|-|+|..++|--..+.. .++
T Consensus 15 p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~--eva 92 (163)
T 1x5b_A 15 PFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHL--EVC 92 (163)
T ss_dssp TTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHH--HHT
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH--HHh
Confidence 355566555553333 45566777776655544567888888999998888888899999999999996333220 011
Q ss_pred -hhHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Q psy3994 85 -PRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 85 -~~f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~ 118 (282)
..|..++.+.+.. ..++..+.+++.++..|..
T Consensus 93 s~~Fl~el~~l~~~--~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 93 SRDFATEVRAVIKN--KAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp SHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHH
Confidence 2355555544431 1567899999999999985
No 229
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.47 E-value=1.1 Score=41.34 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=45.1
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g 216 (282)
...++|+ +|..+...+|.++|+.||.+ +|+.+ +...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHHh
Confidence 3566666 88888999999999999954 44333 557899999999999999998853
No 230
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=88.22 E-value=0.67 Score=37.99 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=76.8
Q ss_pred HHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCc
Q psy3994 5 KTFNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVF 83 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~ 83 (282)
..|++.+...++...+ ..-.-|.+++...-..-...+..+.+|.+.|+.-+|.-.|-.|-|+|..++|--..+... +-
T Consensus 7 ~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e-ia 85 (226)
T 3zyq_A 7 GTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE-VA 85 (226)
T ss_dssp CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH-HS
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh-hc
Confidence 4677777777665544 556678888877654445678888999999998888889999999999999974433200 00
Q ss_pred hhhHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Q psy3994 84 GPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 84 ~~~f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~ 118 (282)
-..|...|.+.+.. ..++..+.+++.++..|..
T Consensus 86 s~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 86 NKQTMEELKDLLKR--QVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp SHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHH
Confidence 11344444444321 2567899999999999974
No 231
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=87.62 E-value=1.2 Score=34.01 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred HHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchh
Q psy3994 7 FNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGP 85 (282)
Q Consensus 7 f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~ 85 (282)
|++.+...++...+ ..=.-|..++...-..-...+..+..|.+.|+..+|...+-.|-|+|..++|--..+... +-..
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e-vas~ 80 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSE-VAKF 80 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH-HTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH-HhhH
Confidence 45555555554433 444567777776655446678888899999999999999999999999999963332100 0011
Q ss_pred hHHHHHHHHHHHhh--c-CChhhHHHHHHHHHhhcc
Q psy3994 86 RFARNLKATFQHLY--Q-CPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 86 ~f~~~l~~~f~~v~--~-~~~~~~~k~~~~l~~w~~ 118 (282)
.|..++.+.+..-+ . .+...+.++..++..|..
T Consensus 81 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 81 RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34445444443222 1 467889999999999974
No 232
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.28 E-value=0.85 Score=35.68 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=74.5
Q ss_pred HHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchh
Q psy3994 7 FNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGP 85 (282)
Q Consensus 7 f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~ 85 (282)
|++.+...++...+ ..=.-|..++...-..-...+..+..|.+.|+..+|...+-.|-|+|..++|--..+... +--.
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~e-vas~ 92 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNE-VGKF 92 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH-HTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH-HhhH
Confidence 66666666554433 445567777776655445677788889999988888889999999999999953333210 0111
Q ss_pred hHHHHHHHHHHHhh--c-CChhhHHHHHHHHHhhcc
Q psy3994 86 RFARNLKATFQHLY--Q-CPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 86 ~f~~~l~~~f~~v~--~-~~~~~~~k~~~~l~~w~~ 118 (282)
.|..++.+.+...+ . .+...+.|++.++..|..
T Consensus 93 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 93 RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 35555555554322 1 457889999999999984
No 233
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=84.31 E-value=1.3 Score=33.85 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCch
Q psy3994 6 TFNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFG 84 (282)
Q Consensus 6 ~f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~ 84 (282)
.|+..+...++...+ ..=.-|..++...-..-...+..+..|.+.|+..+|.-.+-.|-|+|..++|--..|-. .+--
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~-eias 89 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD-EVGK 89 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH-HHTS
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH-HHhh
Confidence 455666666554333 44455666666544333457788889999999888888999999999999997433320 0011
Q ss_pred hhHHHHHHHHHHHhh---cCChhhHHHHHHHHHhhcc
Q psy3994 85 PRFARNLKATFQHLY---QCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 85 ~~f~~~l~~~f~~v~---~~~~~~~~k~~~~l~~w~~ 118 (282)
..|..++.+.+..-| ..++..+.+++.++..|..
T Consensus 90 ~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 90 FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 245556555554332 2568899999999999974
No 234
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=84.21 E-value=2 Score=32.96 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=69.4
Q ss_pred HHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh-cCCCCccceeehhhHHHHHhhhhccCCCCc
Q psy3994 6 TFNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIK-CKPEYKVPALYVIDSLVRQSRHQFQDKDVF 83 (282)
Q Consensus 6 ~f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~-~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~ 83 (282)
.++..++..++...+ ..-.-|.+++...-..-...+..+..|.+.|+. .+|.-.+-.|-|+|..++|--..+... +-
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e-va 94 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL-VA 94 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH-HT
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH-Hh
Confidence 456666666554443 455667777775554445778888888999974 556667899999999999963222100 00
Q ss_pred hhhHHHH-HHHHHHHhhcCChhhHHHHHHHHHhhcc
Q psy3994 84 GPRFARN-LKATFQHLYQCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 84 ~~~f~~~-l~~~f~~v~~~~~~~~~k~~~~l~~w~~ 118 (282)
...|..+ +.+.+..-...+...++|++.++..|..
T Consensus 95 ~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 95 SQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 0123333 2333221122335788999999999975
No 235
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.07 E-value=1 Score=33.92 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=71.4
Q ss_pred HHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchh
Q psy3994 7 FNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGP 85 (282)
Q Consensus 7 f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~ 85 (282)
|+..+...++...+ ..=.-|.+++...-..-...+..+..|.+.++.-.|...+-.|-|+|..++|--..+.. .+--.
T Consensus 6 ~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~-evas~ 84 (140)
T 3ldz_A 6 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHL-EVCSR 84 (140)
T ss_dssp THHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH-HHSSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHH-HHhhH
Confidence 45555555443333 44556777777655444567888889999998888888888899999999996333220 00012
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Q psy3994 86 RFARNLKATFQHLYQCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 86 ~f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~ 118 (282)
.|...+.+.+. ..++..+.++..++..|..
T Consensus 85 ~Fl~el~~l~~---~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 85 DFASEVSNVLN---KGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHH---HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cCCHHHHHHHHHHHHHHHH
Confidence 35555544442 2568899999999999974
No 236
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.91 E-value=2.8 Score=34.02 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=73.0
Q ss_pred HHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHhhhhccCCCCchh
Q psy3994 7 FNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQSRHQFQDKDVFGP 85 (282)
Q Consensus 7 f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~~~~~~~~~~~~~ 85 (282)
|++.++..++...+ ..=..|.+++...-..-...+..+..|.+.|+.-+|.-.+-.|.|+|..++|--..+... +-..
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~e-va~~ 84 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEE-VFTK 84 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH-HSSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHH-HHhH
Confidence 66677666664444 555667777776654445678888888999988888888999999999999953333110 0001
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Q psy3994 86 RFARNLKATFQHLYQCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 86 ~f~~~l~~~f~~v~~~~~~~~~k~~~~l~~w~~ 118 (282)
.|...+...+.. ..+.+.++++..++..|..
T Consensus 85 ~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 85 ENCEMFSSFLES--TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHH
Confidence 244444443332 2467889999999999984
No 237
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=77.67 E-value=0.59 Score=34.84 Aligned_cols=72 Identities=7% Similarity=0.036 Sum_probs=19.3
Q ss_pred cEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCCCCCccccccccCCC--eeeecCCCCCcchhhhhhhc-Ccc
Q psy3994 195 GCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDG--VSYIPYDRLSKEIDYDYLED-GGV 271 (282)
Q Consensus 195 g~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~g--~~~~p~~~~~~~~~~~~~~~-~~~ 271 (282)
.++|++|.+...+..|+..++|....|+. ...++.+.... ..... +..+|.+ .++++|+.+++ .|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~--------~~~~~l~V~nLp~~--~te~~L~~~F~~~G~ 73 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDV--------EGMTSLKVDNLTYR--TSPDTLRRVFEKYGR 73 (135)
T ss_dssp -------------------------------CCSCCSCSSG--------GGCCCEEEECCCSS--CHHHHHHHHHGGGSC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCC--------CCCCEEEEeCCCCC--CCHHHHHHHHHhcCC
Confidence 46789999999999999999988766654 22333322211 11222 3445554 36888887555 455
Q ss_pred cccCCC
Q psy3994 272 FDEDTV 277 (282)
Q Consensus 272 ~~~~~~ 277 (282)
+..+.+
T Consensus 74 i~~v~i 79 (135)
T 2lea_A 74 VGDVYI 79 (135)
T ss_dssp CSEEEC
T ss_pred EEEEEE
Confidence 554444
No 238
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=74.20 E-value=3.7 Score=31.34 Aligned_cols=113 Identities=16% Similarity=0.188 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhc-CCCCccceeehhhHHHHHhhhhccCCCC
Q psy3994 5 KTFNQELSSLYDTKPP-ISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKC-KPEYKVPALYVIDSLVRQSRHQFQDKDV 82 (282)
Q Consensus 5 ~~f~~~L~~l~~~~~p-~s~~~I~~lt~~a~~~~~~~~~~v~~~~~~~~~~-~p~~kl~~lYv~Dsi~r~~~~~~~~~~~ 82 (282)
..|+..+...++...+ -.=.-|.+++...-..-...+..+..|.+.|+.. ++.-.+-.|-|+|..++|--..+... +
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e-i 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL-I 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH-H
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH-H
Confidence 3566666666554443 4555677787776655567788888888888742 33345668889999999973222100 0
Q ss_pred chhhHHHH-HHHHHHHhhcCChhhHHHHHHHHHhhcc
Q psy3994 83 FGPRFARN-LKATFQHLYQCPPEDKSKIIRVLNLWQK 118 (282)
Q Consensus 83 ~~~~f~~~-l~~~f~~v~~~~~~~~~k~~~~l~~w~~ 118 (282)
--..|..+ +.+.+..-+..+...+.++..++..|..
T Consensus 94 ask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 94 VKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp SSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 00012221 2222222222445789999999999975
No 239
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.46 E-value=8.6 Score=25.07 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=42.9
Q ss_pred EEEec-CCCccCcHHHHHhhhccCCc-----eEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q psy3994 160 TLWIG-HLSKLVQEEELSDTFGEYGD-----VVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAP 230 (282)
Q Consensus 160 ~l~V~-nl~~~~te~~l~~~f~~~G~-----i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 230 (282)
++|+. +=...++..+|..++..-+. |-.+.+.. .|.||+-.. +.|..++..|++..+.|+.++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45663 22345666677777765443 45566644 789999875 56888999999999999999988764
No 240
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.92 E-value=63 Score=22.00 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=46.1
Q ss_pred CCcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q psy3994 157 CSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL 214 (282)
Q Consensus 157 ~~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~l 214 (282)
.++-+-+-|+|..+-..++--.....|---.|..+. |-|.+.|.+.++...|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--CeeEEEecCChHHHHHHHHH
Confidence 457888899999988888777777777666666655 88999999999999999877
No 241
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.80 E-value=20 Score=27.02 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHhhhccCCceEEEEEeCCCcEEEEEec
Q psy3994 173 EELSDTFGEYGDVVSINLIPPRGCAFVCMN 202 (282)
Q Consensus 173 ~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~ 202 (282)
+++.++|...|.|.... ..+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeC
Confidence 45667788788776554 47799999976
No 242
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=23.37 E-value=1.7e+02 Score=20.99 Aligned_cols=46 Identities=7% Similarity=0.097 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy3994 3 VIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEK 49 (282)
Q Consensus 3 ~~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~v~~~~~ 49 (282)
.+++|...|..+-+.. |++..+-..|.+.|-.....++..|.-+.+
T Consensus 16 ~~~~~~~~~~~~~~~~-plTEERRKeLVK~akk~aEeaKVAIRNIRR 61 (121)
T 3lf9_A 16 SVEALKNNLSKVRTGG-GGTEERRKDLVKIVRGEAEGGRVAVRNIAR 61 (121)
T ss_dssp HHHHHHHHHHHCCCSS-BCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHhhcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4788999998886655 599999999999998887777777666654
No 243
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.07 E-value=32 Score=25.62 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHhcCCCCccceeehhhHHHHHh
Q psy3994 18 KPPISKAKITAITRSAIRA-IKFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLVRQS 73 (282)
Q Consensus 18 ~~p~s~~~I~~lt~~a~~~-~~~~~~~v~~~~~~~~~~~p~~kl~~lYv~Dsi~r~~ 73 (282)
.-|-++.-..+++.+.... ......++..+.+.+++-+|.+|+-.|=+++-++++.
T Consensus 24 ~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 24 DKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp SSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 3358888999999988775 3567899999999999988888999998999888655
No 244
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=23.03 E-value=1.4e+02 Score=18.32 Aligned_cols=55 Identities=11% Similarity=-0.065 Sum_probs=42.3
Q ss_pred CcEEEecCCCccCcHHHHHhhhccCCceEEEEEeCCCcEEEEEecCHHHHHHHHHH
Q psy3994 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYK 213 (282)
Q Consensus 158 ~~~l~V~nl~~~~te~~l~~~f~~~G~i~~~~~~~~kg~aFV~f~~~~~A~~Ai~~ 213 (282)
..++.|.++.-.--...++..+.. ..|..+.+....+-+-|.|.+.+....+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 357888888766667788899988 8888888887778888888855556666664
No 245
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=20.31 E-value=1.5e+02 Score=18.12 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=23.8
Q ss_pred CchhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q psy3994 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHV 43 (282)
Q Consensus 1 m~~~~~f~~~L~~l~~~~~p~s~~~I~~lt~~a~~~~~~~~~~ 43 (282)
|..+.+..+.|..|.. .+.+++..++.|+.--+-+
T Consensus 1 ~~dl~~~~~si~~l~~--------ql~sla~vvlQNRraLD~L 35 (55)
T 1mof_A 1 MDDLREVEKSISNLEK--------SLTSLSEVVLQNRRGLDLL 35 (55)
T ss_dssp --CHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 5567777777777744 6888888888887654433
Done!