Your job contains 1 sequence.
>psy3994
MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKV
PALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNE
VFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFG
EYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGMKDKDWK
DFWEVQDGVSYIPYDRLSKEIDYDYLEDGGVFDEDTVPLWLK
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3994
(282 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034598 - symbol:CG4266 species:7227 "Drosophila m... 504 8.7e-96 2
ZFIN|ZDB-GENE-030131-4817 - symbol:wu:fd99c08 "wu:fd99c08... 462 2.2e-73 2
UNIPROTKB|F1LPT8 - symbol:Rbm16 "Protein Rbm16" species:1... 467 4.3e-73 2
MGI|MGI:1925212 - symbol:Scaf8 "SR-related CTD-associated... 467 4.3e-73 2
UNIPROTKB|Q9UPN6 - symbol:SCAF8 "Protein SCAF8" species:9... 467 5.5e-73 2
UNIPROTKB|F1SB23 - symbol:SCAF8 "Uncharacterized protein"... 467 6.9e-73 2
UNIPROTKB|O95104 - symbol:SCAF4 "Splicing factor, arginin... 464 2.0e-72 2
UNIPROTKB|F1LSM7 - symbol:Sfrs15 "Protein Sfrs15" species... 464 2.1e-72 2
UNIPROTKB|I3LPZ9 - symbol:SCAF4 "Uncharacterized protein"... 464 2.4e-72 2
UNIPROTKB|F1P0Y4 - symbol:SCAF4 "Uncharacterized protein"... 456 9.1e-72 2
RGD|708362 - symbol:Scaf8 "SR-related CTD-associated fact... 452 1.7e-71 2
UNIPROTKB|F1NW30 - symbol:Gga.54017 "Uncharacterized prot... 446 6.4e-71 2
ZFIN|ZDB-GENE-030131-9003 - symbol:scaf4a "SR-related CTD... 443 1.2e-70 2
ZFIN|ZDB-GENE-050506-42 - symbol:scaf4b "SR-related CTD-a... 419 3.4e-70 2
UNIPROTKB|B7Z888 - symbol:SCAF8 "Protein SCAF8" species:9... 430 3.5e-70 3
UNIPROTKB|F1MYK6 - symbol:LOC540182 "Uncharacterized prot... 440 4.3e-70 2
UNIPROTKB|F1MTX3 - symbol:SCAF4 "Uncharacterized protein"... 435 2.1e-69 2
UNIPROTKB|F1LTF2 - symbol:Sfrs15 "Protein Sfrs15" species... 435 2.6e-69 2
UNIPROTKB|F1PC86 - symbol:SCAF8 "Uncharacterized protein"... 430 5.0e-69 2
UNIPROTKB|F1Q448 - symbol:SCAF4 "Uncharacterized protein"... 430 1.1e-68 2
UNIPROTKB|F1M994 - symbol:Sfrs15 "Protein Sfrs15" species... 428 1.1e-68 2
UNIPROTKB|F1P0Y5 - symbol:SCAF4 "Uncharacterized protein"... 427 1.2e-68 2
UNIPROTKB|C9JLZ0 - symbol:SCAF4 "Splicing factor, arginin... 385 5.8e-64 2
WB|WBGene00017004 - symbol:nrd-1 species:6239 "Caenorhabd... 292 1.8e-39 2
RGD|727896 - symbol:Scaf4 "SR-related CTD-associated fact... 310 4.7e-29 2
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 154 1.2e-08 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 144 2.0e-07 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 143 2.7e-07 1
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 120 4.4e-07 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 138 9.3e-07 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 137 1.1e-06 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 115 1.6e-06 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 115 1.6e-06 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 135 2.4e-06 1
FB|FBgn0037220 - symbol:CG14641 species:7227 "Drosophila ... 134 2.8e-06 1
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 112 3.4e-06 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 112 3.4e-06 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 133 4.4e-06 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 132 4.9e-06 1
UNIPROTKB|H9L1A3 - symbol:LOC100859076 "Uncharacterized p... 129 5.6e-06 1
WB|WBGene00011722 - symbol:T11G6.8 species:6239 "Caenorha... 130 7.6e-06 1
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 122 1.9e-05 1
TAIR|locus:2025077 - symbol:MAC5A "MOS4-associated comple... 127 2.2e-05 1
TAIR|locus:2146668 - symbol:AT5G04210 species:3702 "Arabi... 118 2.4e-05 1
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 110 2.8e-05 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 124 2.9e-05 1
TAIR|locus:2043157 - symbol:MAC5B "MOS4-associated comple... 126 2.9e-05 1
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein... 124 2.9e-05 1
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"... 124 2.9e-05 1
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ... 124 2.9e-05 1
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 124 3.0e-05 1
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 124 3.0e-05 1
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ... 124 3.0e-05 1
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 124 3.0e-05 1
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp... 124 3.0e-05 1
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 124 3.0e-05 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 123 4.8e-05 1
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 107 4.9e-05 1
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 122 5.1e-05 1
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 122 5.2e-05 1
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 122 5.2e-05 1
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 122 5.2e-05 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 99 9.4e-05 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 120 0.00012 1
ASPGD|ASPL0000013024 - symbol:AN8276 species:162425 "Emer... 103 0.00015 2
TAIR|locus:2058203 - symbol:FPA species:3702 "Arabidopsis... 123 0.00015 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 120 0.00016 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 96 0.00020 1
POMBASE|SPBC29A3.07c - symbol:sab14 "U2 snRNP-associated ... 96 0.00020 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 118 0.00022 2
WB|WBGene00009141 - symbol:ncbp-2 species:6239 "Caenorhab... 105 0.00030 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 116 0.00031 1
UNIPROTKB|Q7ZXB5 - symbol:rbm22 "Pre-mRNA-splicing factor... 116 0.00032 1
ZFIN|ZDB-GENE-030131-3902 - symbol:rbm4.1 "RNA binding mo... 116 0.00032 1
ZFIN|ZDB-GENE-040426-2298 - symbol:rbm22 "RNA binding mot... 116 0.00033 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 117 0.00033 1
UNIPROTKB|F8WE16 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 93 0.00043 1
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 112 0.00043 1
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 112 0.00052 1
SGD|S000006099 - symbol:CBC2 "Small subunit of the hetero... 108 0.00058 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 91 0.00071 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 91 0.00071 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 112 0.00082 1
UNIPROTKB|Q6P616 - symbol:rbm22 "Pre-mRNA-splicing factor... 112 0.00090 1
GENEDB_PFALCIPARUM|PFL1200c - symbol:PFL1200c "hypothetic... 90 0.00092 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 90 0.00092 1
UNIPROTKB|Q8I5G8 - symbol:PFL1200c "Splicing factor 3b su... 90 0.00092 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 90 0.00092 1
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 116 0.00097 1
>FB|FBgn0034598 [details] [associations]
symbol:CG4266 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
KO:K13191 GeneTree:ENSGT00530000063946 RefSeq:NP_001097394.1
UniGene:Dm.4151 ProteinModelPortal:A8DYK5 SMR:A8DYK5 STRING:A8DYK5
EnsemblMetazoa:FBtr0113100 GeneID:37411 KEGG:dme:Dmel_CG4266
UCSC:CG4266-RB FlyBase:FBgn0034598 OMA:RAITISW OrthoDB:EOG4NK99F
PhylomeDB:A8DYK5 GenomeRNAi:37411 NextBio:803495 Bgee:A8DYK5
Uniprot:A8DYK5
Length = 1306
Score = 504 (182.5 bits), Expect = 8.7e-96, Sum P(2) = 8.7e-96
Identities = 91/153 (59%), Positives = 111/153 (72%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ + FN ELS LYD++PPIS YKHVVQSVEKFI+KCKPEYKV
Sbjct: 1 METVVAFNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKFILKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQ+ DKD+F PRF RNL TF +L++C PEDKS+IIRVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLFRCAPEDKSRIIRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMADPNHPIHRELAEIQARNG 152
VF ++I P+FD+ADPNHPI+ ++ + G
Sbjct: 121 NVFKSEVIQPIFDLADPNHPIYHQMPPVGGSGG 153
Score = 492 (178.3 bits), Expect = 8.7e-96, Sum P(2) = 8.7e-96
Identities = 84/128 (65%), Positives = 111/128 (86%)
Query: 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL 214
++CSTTLW+GHLSKLV +EELSDTFGEYGD+VSI+ I PRGCAF+ MNRRQDA KA+ L
Sbjct: 488 SVCSTTLWVGHLSKLVYQEELSDTFGEYGDIVSIDQIVPRGCAFIVMNRRQDAHKAMQAL 547
Query: 215 KNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLEDGGVFDE 274
KN KLQG+ IT++WA GKG+K K+WKD+W+++ GV+YIP+ +LS + D+D LE+GG+FDE
Sbjct: 548 KNHKLQGRAITISWAAGKGVKSKEWKDYWDLELGVTYIPWSKLSSDTDFDALEEGGMFDE 607
Query: 275 DTVPLWLK 282
DT+P+ +K
Sbjct: 608 DTMPIQMK 615
>ZFIN|ZDB-GENE-030131-4817 [details] [associations]
symbol:wu:fd99c08 "wu:fd99c08" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046660 "female sex differentiation"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4817 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0046660 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:CABZ01087003 EMBL:CABZ01087004
EMBL:CABZ01087005 EMBL:CABZ01088109 EMBL:CU499333 IPI:IPI00900531
Ensembl:ENSDART00000112675 Bgee:E7FF46 Uniprot:E7FF46
Length = 1286
Score = 462 (167.7 bits), Expect = 2.2e-73, Sum P(2) = 2.2e-73
Identities = 89/135 (65%), Positives = 101/135 (74%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ +K FN EL SL + KPPIS FYKHVVQSVEKFI KCKPEYKV
Sbjct: 1 MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF Q+KDVF PRF++N+ TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIIGTFQNLYRCPTDDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF DII PL DMA
Sbjct: 121 NVFKSDIIQPLLDMA 135
Score = 322 (118.4 bits), Expect = 2.2e-73, Sum P(2) = 2.2e-73
Identities = 59/130 (45%), Positives = 93/130 (71%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ V ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA++CM RQDA +
Sbjct: 468 RSRVLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYR 527
Query: 210 ALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K +++K FW+V GV+YIP++++ + D D
Sbjct: 528 ALQKLSTGSYKIGSKVIKIAWALNKGVK-QEYKQFWDVDLGVTYIPWEKVKLD-DLDDFA 585
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 586 EGGMIDQETV 595
>UNIPROTKB|F1LPT8 [details] [associations]
symbol:Rbm16 "Protein Rbm16" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00530000063946 IPI:IPI00211007
Ensembl:ENSRNOT00000065733 ArrayExpress:F1LPT8 Uniprot:F1LPT8
Length = 1267
Score = 467 (169.5 bits), Expect = 4.3e-73, Sum P(2) = 4.3e-73
Identities = 90/135 (66%), Positives = 102/135 (75%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ +KTFN EL SL D KPPIS FYKHVVQSVEKFI KCKPEYKV
Sbjct: 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 NVFKSEIIQPLLDMA 135
Score = 314 (115.6 bits), Expect = 4.3e-73, Sum P(2) = 4.3e-73
Identities = 58/130 (44%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQD+ +
Sbjct: 467 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFR 526
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ + D D
Sbjct: 527 ALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVDLGVTYIPWEKVKVD-DLDGFA 584
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 585 EGGMIDQETV 594
>MGI|MGI:1925212 [details] [associations]
symbol:Scaf8 "SR-related CTD-associated factor 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0043175 "RNA polymerase core enzyme binding"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1925212 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006366 GO:GO:0016363 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 eggNOG:NOG306894 CTD:22828
HOVERGEN:HBG055796 KO:K13191 OrthoDB:EOG45MN4V ChiTaRS:SCAF8
EMBL:AK122451 EMBL:BC038363 EMBL:BC075621 EMBL:AK032418
EMBL:AK161113 IPI:IPI00938443 RefSeq:NP_598884.2 UniGene:Mm.124373
UniGene:Mm.486401 ProteinModelPortal:Q6DID3 SMR:Q6DID3
PhosphoSite:Q6DID3 PaxDb:Q6DID3 PRIDE:Q6DID3
Ensembl:ENSMUST00000076734 GeneID:106583 KEGG:mmu:106583
UCSC:uc008aei.2 GeneTree:ENSGT00530000063946 InParanoid:Q6DID3
OMA:YRFPPIE NextBio:358280 Bgee:Q6DID3 Genevestigator:Q6DID3
Uniprot:Q6DID3
Length = 1268
Score = 467 (169.5 bits), Expect = 4.3e-73, Sum P(2) = 4.3e-73
Identities = 90/135 (66%), Positives = 102/135 (75%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ +KTFN EL SL D KPPIS FYKHVVQSVEKFI KCKPEYKV
Sbjct: 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 NVFKSEIIQPLLDMA 135
Score = 314 (115.6 bits), Expect = 4.3e-73, Sum P(2) = 4.3e-73
Identities = 58/130 (44%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQD+ +
Sbjct: 468 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFR 527
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ + D D
Sbjct: 528 ALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVDLGVTYIPWEKVKVD-DLDGFA 585
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 586 EGGMIDQETV 595
Score = 44 (20.5 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 118 KNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSD 177
K E+ TP + H + N+ I ++AE + +E + L K+ ++
Sbjct: 280 KKEMPTPQLSHVSESV---NNSIFHQIAEQLQQQNLEQLRQQLLEQQQPQKVTPQDSQEG 336
Query: 178 TFG 180
TFG
Sbjct: 337 TFG 339
>UNIPROTKB|Q9UPN6 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006366 GO:GO:0016363
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 EMBL:AB029039 EMBL:AL121952
EMBL:AL136976 EMBL:AL591499 EMBL:BC070071 IPI:IPI01012434
RefSeq:NP_055707.3 UniGene:Hs.591329 PDB:2DIW PDB:3D9I PDB:3D9J
PDB:3D9K PDB:3D9L PDB:3D9M PDB:3D9N PDB:3D9O PDB:3D9P PDBsum:2DIW
PDBsum:3D9I PDBsum:3D9J PDBsum:3D9K PDBsum:3D9L PDBsum:3D9M
PDBsum:3D9N PDBsum:3D9O PDBsum:3D9P ProteinModelPortal:Q9UPN6
SMR:Q9UPN6 STRING:Q9UPN6 PhosphoSite:Q9UPN6 DMDM:30580495
PaxDb:Q9UPN6 PRIDE:Q9UPN6 Ensembl:ENST00000367178
Ensembl:ENST00000417268 GeneID:22828 KEGG:hsa:22828 UCSC:uc003qpz.3
CTD:22828 GeneCards:GC06P155055 HGNC:HGNC:20959 HPA:HPA035602
neXtProt:NX_Q9UPN6 PharmGKB:PA128394587 HOVERGEN:HBG055796
InParanoid:Q9UPN6 KO:K13191 OrthoDB:EOG45MN4V PhylomeDB:Q9UPN6
ChiTaRS:SCAF8 EvolutionaryTrace:Q9UPN6 GenomeRNAi:22828
NextBio:43242 ArrayExpress:Q9UPN6 Bgee:Q9UPN6 CleanEx:HS_RBM16
Genevestigator:Q9UPN6 GermOnline:ENSG00000146426 Uniprot:Q9UPN6
Length = 1271
Score = 467 (169.5 bits), Expect = 5.5e-73, Sum P(2) = 5.5e-73
Identities = 90/135 (66%), Positives = 102/135 (75%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ +KTFN EL SL D KPPIS FYKHVVQSVEKFI KCKPEYKV
Sbjct: 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 NVFKSEIIQPLLDMA 135
Score = 313 (115.2 bits), Expect = 5.5e-73, Sum P(2) = 5.5e-73
Identities = 58/130 (44%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQDA +
Sbjct: 468 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFR 527
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ + D +
Sbjct: 528 ALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVDLGVTYIPWEKVKVD-DLEGFA 585
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 586 EGGMIDQETV 595
>UNIPROTKB|F1SB23 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:CU633674
EMBL:FP565558 Ensembl:ENSSSCT00000004499 Uniprot:F1SB23
Length = 1347
Score = 467 (169.5 bits), Expect = 6.9e-73, Sum P(2) = 6.9e-73
Identities = 90/135 (66%), Positives = 102/135 (75%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ +KTFN EL SL D KPPIS FYKHVVQSVEKFI KCKPEYKV
Sbjct: 79 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 138
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 139 PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 198
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 199 NVFKSEIIQPLLDMA 213
Score = 313 (115.2 bits), Expect = 6.9e-73, Sum P(2) = 6.9e-73
Identities = 58/130 (44%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQDA +
Sbjct: 546 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFR 605
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ + D +
Sbjct: 606 ALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVDLGVTYIPWEKVKVD-DLEGFA 663
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 664 EGGMIDQETV 673
Score = 37 (18.1 bits), Expect = 7.8e-44, Sum P(2) = 7.8e-44
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 118 KNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSD 177
K E+ T + H + N+ I ++AE + +E++ L K ++
Sbjct: 358 KKEIPTSQLSHVSESV---NNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEG 414
Query: 178 TFG 180
TFG
Sbjct: 415 TFG 417
>UNIPROTKB|O95104 [details] [associations]
symbol:SCAF4 "Splicing factor, arginine/serine-rich 15"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AF023142 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG306894 EMBL:AL834304 EMBL:AL117417 EMBL:AP001711
EMBL:BC014921 EMBL:BC052286 EMBL:BC064990 EMBL:AB032998
IPI:IPI00181702 IPI:IPI00397794 RefSeq:NP_001138916.1
RefSeq:NP_001138917.1 RefSeq:NP_065757.1 UniGene:Hs.17255
ProteinModelPortal:O95104 SMR:O95104 IntAct:O95104
MINT:MINT-1692995 STRING:O95104 PhosphoSite:O95104 PaxDb:O95104
PRIDE:O95104 Ensembl:ENST00000286835 Ensembl:ENST00000399804
GeneID:57466 KEGG:hsa:57466 UCSC:uc002ypd.2 UCSC:uc002ype.2
CTD:57466 GeneCards:GC21M033044 HGNC:HGNC:19304 HPA:HPA018319
HPA:HPA018668 HPA:HPA021504 HPA:HPA028807 neXtProt:NX_O95104
PharmGKB:PA134903281 HOGENOM:HOG000143432 HOVERGEN:HBG055644
InParanoid:O95104 KO:K13167 OMA:QDPVHHQ OrthoDB:EOG498V17
GenomeRNAi:57466 NextBio:63678 ArrayExpress:O95104 Bgee:O95104
CleanEx:HS_SFRS15 Genevestigator:O95104 GermOnline:ENSG00000156304
Uniprot:O95104
Length = 1147
Score = 464 (168.4 bits), Expect = 2.0e-72, Sum P(2) = 2.0e-72
Identities = 91/135 (67%), Positives = 99/135 (73%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
MD + FNQEL SL D KPPIS YKHVVQ VEKFI KCKPEYKV
Sbjct: 1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 GVFKIEIIQPLLDMA 135
Score = 309 (113.8 bits), Expect = 2.0e-72, Sum P(2) = 2.0e-72
Identities = 59/136 (43%), Positives = 91/136 (66%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q + ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 497 QVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 556
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 557 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADYKQYWDVELGVTYIPWDKVKPE-ELES 614
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 615 FCEGGMLDSDTLNPDW 630
Score = 42 (19.8 bits), Expect = 9.0e-28, Sum P(2) = 9.0e-28
Identities = 22/97 (22%), Positives = 36/97 (37%)
Query: 56 PEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNL 115
P + P + D + + + Q Q+ D F PR + H PP + +L
Sbjct: 314 PPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPGFGLL-- 371
Query: 116 WQKNEVFTPDIIHPLFDMADPNHPIHREL-AEIQARN 151
F P + P+ P P+ + A QA+N
Sbjct: 372 --PTPPFPP-MAQPVIP---PTPPVQQPFQASFQAQN 402
>UNIPROTKB|F1LSM7 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00530000063946 IPI:IPI00211011
Ensembl:ENSRNOT00000047741 ArrayExpress:F1LSM7 Uniprot:F1LSM7
Length = 1226
Score = 464 (168.4 bits), Expect = 2.1e-72, Sum P(2) = 2.1e-72
Identities = 91/135 (67%), Positives = 99/135 (73%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
MD + FNQEL SL D KPPIS YKHVVQ VEKFI KCKPEYKV
Sbjct: 1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 GVFKIEIIQPLLDMA 135
Score = 310 (114.2 bits), Expect = 2.1e-72, Sum P(2) = 2.1e-72
Identities = 59/136 (43%), Positives = 92/136 (67%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q ++ ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 567 QIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 626
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 627 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADFKQYWDVELGVTYIPWDKVKAE-ELES 684
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 685 FCEGGMLDSDTLNPDW 700
Score = 52 (23.4 bits), Expect = 7.8e-29, Sum P(2) = 7.8e-29
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 56 PEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPP 103
P + P Y D + + + Q Q+ D F PR + + QH PP
Sbjct: 308 PPPQAPFGYPGDGMQQPAYTQHQNVDQFQPRMMALQQDSMQHQVPLPP 355
>UNIPROTKB|I3LPZ9 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:FP325217
EMBL:FP325269 Ensembl:ENSSSCT00000030551 Uniprot:I3LPZ9
Length = 1132
Score = 464 (168.4 bits), Expect = 2.4e-72, Sum P(2) = 2.4e-72
Identities = 91/135 (67%), Positives = 99/135 (73%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
MD + FNQEL SL D KPPIS YKHVVQ VEKFI KCKPEYKV
Sbjct: 1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 GVFKIEIIQPLLDMA 135
Score = 308 (113.5 bits), Expect = 2.4e-72, Sum P(2) = 2.4e-72
Identities = 59/136 (43%), Positives = 91/136 (66%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q + ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 504 QIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 563
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 564 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADYKQYWDVELGVTYIPWDKVKPE-ELES 621
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 622 FCEGGMLDSDTLNPDW 637
Score = 39 (18.8 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 67 DSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPP 103
D + + + Q Q+ D F PR + H PP
Sbjct: 333 DGMQQPAYTQHQNMDQFQPRMMTIQQDPVHHQVPLPP 369
>UNIPROTKB|F1P0Y4 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:AADN02010755 IPI:IPI00596341
Ensembl:ENSGALT00000025555 ArrayExpress:F1P0Y4 Uniprot:F1P0Y4
Length = 1092
Score = 456 (165.6 bits), Expect = 9.1e-72, Sum P(2) = 9.1e-72
Identities = 89/135 (65%), Positives = 99/135 (73%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ + FNQEL SL + KPPIS YKHVVQ VEKFI KCKPEYKV
Sbjct: 1 MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 GVFKIEIIQPLLDMA 135
Score = 310 (114.2 bits), Expect = 9.1e-72, Sum P(2) = 9.1e-72
Identities = 59/136 (43%), Positives = 91/136 (66%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q ++ ++CSTTLW+G L K ++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 485 QIKSETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVHRQDA 544
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E D +
Sbjct: 545 YRALQKLSRGNFKVNQKSIKIAWALNKGIKP-DYKQYWDVELGVTYIPWDKVKPE-DLES 602
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D +T+ P W
Sbjct: 603 FCEGGMLDNETLSPEW 618
>RGD|708362 [details] [associations]
symbol:Scaf8 "SR-related CTD-associated factor 8" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IMP] [GO:0043175 "RNA polymerase core enzyme binding"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:708362 GO:GO:0019904 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006366
GO:GO:0016363 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 CTD:22828 HOVERGEN:HBG055796
KO:K13191 OrthoDB:EOG45MN4V EMBL:U49055 IPI:IPI00211007 PIR:T31420
RefSeq:NP_620794.1 UniGene:Rn.10529 ProteinModelPortal:Q63623
SMR:Q63623 PhosphoSite:Q63623 GeneID:245926 KEGG:rno:245926
UCSC:RGD:708362 HOGENOM:HOG000154078 InParanoid:Q63623
NextBio:623189 ArrayExpress:Q63623 Genevestigator:Q63623
Uniprot:Q63623
Length = 1268
Score = 452 (164.2 bits), Expect = 1.7e-71, Sum P(2) = 1.7e-71
Identities = 88/135 (65%), Positives = 100/135 (74%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ +KTFN EL SL D KPPIS FYKHVVQSVEKFI KCKPEYKV
Sbjct: 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQ Q+KDV PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN
Sbjct: 61 PGLYVIDSIVRQSRHQVGQEKDVCAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 121 NVFKSEIIQPLLDMA 135
Score = 314 (115.6 bits), Expect = 1.7e-71, Sum P(2) = 1.7e-71
Identities = 58/130 (44%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQD+ +
Sbjct: 468 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFR 527
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ + D D
Sbjct: 528 ALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVDLGVTYIPWEKVKVD-DLDGFA 585
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 586 EGGMIDQETV 595
>UNIPROTKB|F1NW30 [details] [associations]
symbol:Gga.54017 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043175 "RNA polymerase core enzyme
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:AADN02025403
EMBL:AADN02025404 IPI:IPI00579015 Ensembl:ENSGALT00000022182
Uniprot:F1NW30
Length = 1288
Score = 446 (162.1 bits), Expect = 6.4e-71, Sum P(2) = 6.4e-71
Identities = 87/132 (65%), Positives = 98/132 (74%)
Query: 4 IKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPAL 63
I T+ EL SL D KPPIS FYKHVVQSVEKFI KCKPEYKVP L
Sbjct: 4 ITTYQSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGL 63
Query: 64 YVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVF 122
YVIDS+VRQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN VF
Sbjct: 64 YVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVF 123
Query: 123 TPDIIHPLFDMA 134
+II PL DMA
Sbjct: 124 KSEIIQPLLDMA 135
Score = 315 (115.9 bits), Expect = 6.4e-71, Sum P(2) = 6.4e-71
Identities = 59/130 (45%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQDA +
Sbjct: 469 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYR 528
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GVSYIP++++ + D +
Sbjct: 529 ALQKLSSGSYKIGSKIIKIAWALNKGVKT-EYKQFWDVDLGVSYIPWEKVKLD-DLEGFA 586
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 587 EGGMIDQETV 596
>ZFIN|ZDB-GENE-030131-9003 [details] [associations]
symbol:scaf4a "SR-related CTD-associated factor
4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9003 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:AL837524 EMBL:AL935277
IPI:IPI00993297 Ensembl:ENSDART00000108981 Uniprot:E7F172
Length = 1104
Score = 443 (161.0 bits), Expect = 1.2e-70, Sum P(2) = 1.2e-70
Identities = 85/135 (62%), Positives = 96/135 (71%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
MD + FN EL SL DTKPPIS YKHVVQ VEKFI KCKPEYKV
Sbjct: 1 MDAVNAFNHELFSLMDTKPPISRAKMISITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYV+DS+VRQSRHQF DKDVFGPRF +N+ TF++L CP ED+SKI+RVLNLWQKN
Sbjct: 61 PGLYVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPTEDRSKIVRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMA 134
VF ++I PL DMA
Sbjct: 121 GVFKIEVIQPLLDMA 135
Score = 313 (115.2 bits), Expect = 1.2e-70, Sum P(2) = 1.2e-70
Identities = 58/134 (43%), Positives = 89/134 (66%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
+N ++CSTTLW+G L K Q+++++ E+G + SIN+IPPRGCA++ M RQDA +
Sbjct: 514 KNNTLSVCSTTLWVGQLDKRTQQQDVASILEEFGQIDSINMIPPRGCAYIVMIHRQDAYR 573
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL K+ K I +AWA KG+K ++K +W+V+ GV+Y+P+ ++ E D D
Sbjct: 574 ALQKLSRGPYKVNQKAIKIAWALNKGIK-AEFKQYWDVELGVTYVPWSKVKME-DLDVFR 631
Query: 268 DGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 632 EGGMLDSDTLAPEW 645
>ZFIN|ZDB-GENE-050506-42 [details] [associations]
symbol:scaf4b "SR-related CTD-associated factor 4b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050506-42 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 HOVERGEN:HBG055644 EMBL:BC065329 IPI:IPI00619155
UniGene:Dr.81696 ProteinModelPortal:Q6P118 Uniprot:Q6P118
Length = 745
Score = 419 (152.6 bits), Expect = 3.4e-70, Sum P(2) = 3.4e-70
Identities = 80/142 (56%), Positives = 98/142 (69%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
M+ + FN E+SS+ D PPIS YKHVVQ VEKFI +CKP+ KV
Sbjct: 1 MEAVNAFNGEMSSMMDMTPPISRAKMMSVTKAGIKAIRLYKHVVQIVEKFIKRCKPDLKV 60
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYV+DS++RQSRHQF DKD+FGPRF +N TFQ+L++CP +DK KI+RVLNLWQKN
Sbjct: 61 PGLYVVDSIIRQSRHQFGADKDLFGPRFLKNFTVTFQNLFECPEDDKGKILRVLNLWQKN 120
Query: 120 EVFTPDIIHPLFDMAD-PNHPI 140
EVF +II PL DMA P P+
Sbjct: 121 EVFGLEIIQPLVDMATAPVLPV 142
Score = 324 (119.1 bits), Expect = 3.4e-70, Sum P(2) = 3.4e-70
Identities = 63/142 (44%), Positives = 94/142 (66%)
Query: 142 RELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCM 201
R+ AE + ++C+TTLWIG L K Q ++++ E+G + SIN+IPPRGCA+V M
Sbjct: 481 RQKAEPSVKKETLSVCTTTLWIGQLDKKTQRQDITSLMEEFGQIESINMIPPRGCAYVAM 540
Query: 202 NRRQDAAKALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSK 259
RQDA AL KL T K+ KTI +AWA KG+K ++K FW+V+ G+++IP+ ++ K
Sbjct: 541 VHRQDAQTALNKLSKTSVKVNQKTIKIAWAMNKGIKS-EYKKFWDVERGITFIPWGKV-K 598
Query: 260 EIDYDYLEDGGVFDEDTV-PLW 280
D L++GG+FD +T+ P W
Sbjct: 599 PNDIQSLQEGGLFDPETLKPEW 620
>UNIPROTKB|B7Z888 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:AL121952 EMBL:AL136976 EMBL:AL591499
UniGene:Hs.591329 HGNC:HGNC:20959 HOVERGEN:HBG055796 ChiTaRS:SCAF8
OMA:YRFPPIE HOGENOM:HOG000154078 EMBL:AK303001 IPI:IPI00871240
SMR:B7Z888 STRING:B7Z888 Ensembl:ENST00000367186 UCSC:uc010kji.3
Uniprot:B7Z888
Length = 1337
Score = 430 (156.4 bits), Expect = 3.5e-70, Sum P(3) = 3.5e-70
Identities = 84/125 (67%), Positives = 94/125 (75%)
Query: 11 LSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLV 70
L SL D KPPIS FYKHVVQSVEKFI KCKPEYKVP LYVIDS+V
Sbjct: 77 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIV 136
Query: 71 RQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDIIHP 129
RQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN VF +II P
Sbjct: 137 RQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQP 196
Query: 130 LFDMA 134
L DMA
Sbjct: 197 LLDMA 201
Score = 313 (115.2 bits), Expect = 3.5e-70, Sum P(3) = 3.5e-70
Identities = 58/130 (44%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQDA +
Sbjct: 534 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFR 593
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ + D +
Sbjct: 594 ALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVDLGVTYIPWEKVKVD-DLEGFA 651
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 652 EGGMIDQETV 661
Score = 37 (18.1 bits), Expect = 3.5e-70, Sum P(3) = 3.5e-70
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 1 MDVIKTFNQE 10
M+ +KTFN E
Sbjct: 46 MEAVKTFNSE 55
>UNIPROTKB|F1MYK6 [details] [associations]
symbol:LOC540182 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:DAAA02027254
EMBL:DAAA02027255 EMBL:DAAA02027256 IPI:IPI00699704
Ensembl:ENSBTAT00000045257 ArrayExpress:F1MYK6 Uniprot:F1MYK6
Length = 1268
Score = 440 (159.9 bits), Expect = 4.3e-70, Sum P(2) = 4.3e-70
Identities = 85/129 (65%), Positives = 97/129 (75%)
Query: 7 FNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPALYVI 66
F ++L SL D KPPIS FYKHVVQSVEKFI KCKPEYKVP LYVI
Sbjct: 7 FTEDLYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
Query: 67 DSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPD 125
DS+VRQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN VF +
Sbjct: 67 DSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSE 126
Query: 126 IIHPLFDMA 134
II PL DMA
Sbjct: 127 IIQPLLDMA 135
Score = 313 (115.2 bits), Expect = 4.3e-70, Sum P(2) = 4.3e-70
Identities = 58/130 (44%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQDA +
Sbjct: 468 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFR 527
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ + D +
Sbjct: 528 ALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVDLGVTYIPWEKVKVD-DLEGFA 585
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 586 EGGMIDQETV 595
>UNIPROTKB|F1MTX3 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:DAAA02000059
IPI:IPI00711648 Ensembl:ENSBTAT00000025104 Uniprot:F1MTX3
Length = 1148
Score = 435 (158.2 bits), Expect = 2.1e-69, Sum P(2) = 2.1e-69
Identities = 88/129 (68%), Positives = 95/129 (73%)
Query: 8 NQE-LSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPALYVI 66
NQE L SL D KPPIS YKHVVQ VEKFI KCKPEYKVP LYVI
Sbjct: 8 NQEILFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVI 67
Query: 67 DSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPD 125
DS+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN VF +
Sbjct: 68 DSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIE 127
Query: 126 IIHPLFDMA 134
II PL DMA
Sbjct: 128 IIQPLLDMA 136
Score = 310 (114.2 bits), Expect = 2.1e-69, Sum P(2) = 2.1e-69
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 144 LAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNR 203
L +I+A ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M
Sbjct: 499 LPQIKAETA--SVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVH 556
Query: 204 RQDAAKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEI 261
RQDA +AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E
Sbjct: 557 RQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADYKQYWDVELGVTYIPWDKVKPE- 614
Query: 262 DYDYLEDGGVFDEDTV-PLW 280
+ + +GG+ D DT+ P W
Sbjct: 615 ELESFCEGGMLDSDTLNPDW 634
>UNIPROTKB|F1LTF2 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
IPI:IPI00950875 PRIDE:F1LTF2 Ensembl:ENSRNOT00000042311
ArrayExpress:F1LTF2 Uniprot:F1LTF2
Length = 1214
Score = 435 (158.2 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 86/128 (67%), Positives = 94/128 (73%)
Query: 8 NQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPALYVID 67
N+ L SL D KPPIS YKHVVQ VEKFI KCKPEYKVP LYVID
Sbjct: 8 NRHLFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVID 67
Query: 68 SLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDI 126
S+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN VF +I
Sbjct: 68 SIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEI 127
Query: 127 IHPLFDMA 134
I PL DMA
Sbjct: 128 IQPLLDMA 135
Score = 310 (114.2 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 59/136 (43%), Positives = 92/136 (67%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q ++ ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 562 QIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 621
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 622 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADFKQYWDVELGVTYIPWDKVKAE-ELES 679
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 680 FCEGGMLDSDTLNPDW 695
Score = 52 (23.4 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 56 PEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPP 103
P + P Y D + + + Q Q+ D F PR + + QH PP
Sbjct: 308 PPPQAPFGYPGDGMQQPAYTQHQNVDQFQPRMMALQQDSMQHQVPLPP 355
>UNIPROTKB|F1PC86 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
CTD:22828 KO:K13191 GeneTree:ENSGT00530000063946 OMA:YRFPPIE
EMBL:AAEX03000284 RefSeq:XP_533458.3 Ensembl:ENSCAFT00000000878
GeneID:476252 KEGG:cfa:476252 Uniprot:F1PC86
Length = 1267
Score = 430 (156.4 bits), Expect = 5.0e-69, Sum P(2) = 5.0e-69
Identities = 84/125 (67%), Positives = 94/125 (75%)
Query: 11 LSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLV 70
L SL D KPPIS FYKHVVQSVEKFI KCKPEYKVP LYVIDS+V
Sbjct: 7 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIV 66
Query: 71 RQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDIIHP 129
RQSRHQF Q+KDVF PRF+ N+ +TFQ+LY+CP +DKSKI+RVLNLWQKN VF +II P
Sbjct: 67 RQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQP 126
Query: 130 LFDMA 134
L DMA
Sbjct: 127 LLDMA 131
Score = 313 (115.2 bits), Expect = 5.0e-69, Sum P(2) = 5.0e-69
Identities = 58/130 (44%), Positives = 91/130 (70%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R+ ++CSTTLW+G + K +++L++ F E+G + SIN+IPPRGCA+VCM RQDA +
Sbjct: 464 RSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFR 523
Query: 210 ALYKLKNT--KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL KL + K+ K I +AWA KG+K ++K FW+V GV+YIP++++ + D +
Sbjct: 524 ALQKLSSGSYKIGSKVIKIAWALNKGVKT-EYKQFWDVDLGVTYIPWEKVKVD-DLEGFA 581
Query: 268 DGGVFDEDTV 277
+GG+ D++TV
Sbjct: 582 EGGMIDQETV 591
>UNIPROTKB|F1Q448 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:AAEX03016485
Ensembl:ENSCAFT00000014079 Uniprot:F1Q448
Length = 1126
Score = 430 (156.4 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 85/126 (67%), Positives = 93/126 (73%)
Query: 10 ELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPALYVIDSL 69
+L SL D KPPIS YKHVVQ VEKFI KCKPEYKVP LYVIDS+
Sbjct: 2 QLFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSI 61
Query: 70 VRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDIIH 128
VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN VF +II
Sbjct: 62 VRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQ 121
Query: 129 PLFDMA 134
PL DMA
Sbjct: 122 PLLDMA 127
Score = 308 (113.5 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 59/136 (43%), Positives = 91/136 (66%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q + ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 484 QIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 543
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 544 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADYKQYWDVELGVTYIPWDKVKPE-ELES 601
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 602 FCEGGMLDSDTLNPDW 617
Score = 39 (18.8 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 67 DSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPP 103
D + + + Q Q+ D F PR + H PP
Sbjct: 313 DGMQQPAYTQHQNMDQFQPRIMAIQQDPVHHQVPLPP 349
>UNIPROTKB|F1M994 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 IPI:IPI00454233
Ensembl:ENSRNOT00000002881 ArrayExpress:F1M994 Uniprot:F1M994
Length = 917
Score = 428 (155.7 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 85/125 (68%), Positives = 92/125 (73%)
Query: 11 LSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPALYVIDSLV 70
L SL D KPPIS YKHVVQ VEKFI KCKPEYKVP LYVIDS+V
Sbjct: 47 LFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV 106
Query: 71 RQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDIIHP 129
RQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN VF +II P
Sbjct: 107 RQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQP 166
Query: 130 LFDMA 134
L DMA
Sbjct: 167 LLDMA 171
Score = 306 (112.8 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 58/129 (44%), Positives = 89/129 (68%)
Query: 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL 214
++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA +AL KL
Sbjct: 551 SVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKL 610
Query: 215 K--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLEDGGVF 272
N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + + +GG+
Sbjct: 611 SRGNYKVNQKSIKIAWALNKGIK-ADFKQYWDVELGVTYIPWDKVKAE-ELESFCEGGML 668
Query: 273 DEDTV-PLW 280
D DT+ P W
Sbjct: 669 DSDTLNPDW 677
Score = 43 (20.2 bits), Expect = 7.0e-28, Sum P(2) = 7.0e-28
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 56 PEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQH 97
P + P Y D + + + Q Q+ D F PR + + QH
Sbjct: 407 PPPQAPFGYPGDGMQQPAYTQHQNVDQFQPRMMALQQDSMQH 448
>UNIPROTKB|F1P0Y5 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:AADN02010755
IPI:IPI00681248 Ensembl:ENSGALT00000025554 ArrayExpress:F1P0Y5
Uniprot:F1P0Y5
Length = 1092
Score = 427 (155.4 bits), Expect = 1.2e-68, Sum P(2) = 1.2e-68
Identities = 85/128 (66%), Positives = 93/128 (72%)
Query: 8 NQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVPALYVID 67
N L SL + KPPIS YKHVVQ VEKFI KCKPEYKVP LYVID
Sbjct: 8 NYMLFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVID 67
Query: 68 SLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEVFTPDI 126
S+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN VF +I
Sbjct: 68 SIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEI 127
Query: 127 IHPLFDMA 134
I PL DMA
Sbjct: 128 IQPLLDMA 135
Score = 310 (114.2 bits), Expect = 1.2e-68, Sum P(2) = 1.2e-68
Identities = 59/136 (43%), Positives = 91/136 (66%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q ++ ++CSTTLW+G L K ++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 485 QIKSETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVHRQDA 544
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E D +
Sbjct: 545 YRALQKLSRGNFKVNQKSIKIAWALNKGIKP-DYKQYWDVELGVTYIPWDKVKPE-DLES 602
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D +T+ P W
Sbjct: 603 FCEGGMLDNETLSPEW 618
>UNIPROTKB|C9JLZ0 [details] [associations]
symbol:SCAF4 "Splicing factor, arginine/serine-rich 15"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
RefSeq:NP_001138916.1 UniGene:Hs.17255 GeneID:57466 KEGG:hsa:57466
CTD:57466 HGNC:HGNC:19304 HOGENOM:HOG000143432 KO:K13167
GenomeRNAi:57466 NextBio:63678 EMBL:AP000254 EMBL:AP000255
IPI:IPI00923625 SMR:C9JLZ0 STRING:C9JLZ0 Ensembl:ENST00000434667
UCSC:uc010glu.2 Uniprot:C9JLZ0
Length = 1132
Score = 385 (140.6 bits), Expect = 5.8e-64, Sum P(2) = 5.8e-64
Identities = 82/135 (60%), Positives = 93/135 (68%)
Query: 1 MDVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKV 60
MD + FNQEL SL D KPPIS K +++ IKCKPEYKV
Sbjct: 1 MDAVNAFNQELFSLMDMKPPISRAKMILIT----------KAAIKA-----IKCKPEYKV 45
Query: 61 PALYVIDSLVRQSRHQF-QDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKN 119
P LYVIDS+VRQSRHQF DKDVFGPRF++N+ ATFQ+LY CP EDKSKI+RVLNLWQKN
Sbjct: 46 PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN 105
Query: 120 EVFTPDIIHPLFDMA 134
VF +II PL DMA
Sbjct: 106 GVFKIEIIQPLLDMA 120
Score = 309 (113.8 bits), Expect = 5.8e-64, Sum P(2) = 5.8e-64
Identities = 59/136 (43%), Positives = 91/136 (66%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q + ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 482 QVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 541
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 542 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADYKQYWDVELGVTYIPWDKVKPE-ELES 599
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 600 FCEGGMLDSDTLNPDW 615
Score = 42 (19.8 bits), Expect = 8.6e-28, Sum P(2) = 8.6e-28
Identities = 22/97 (22%), Positives = 36/97 (37%)
Query: 56 PEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNL 115
P + P + D + + + Q Q+ D F PR + H PP + +L
Sbjct: 299 PPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPGFGLL-- 356
Query: 116 WQKNEVFTPDIIHPLFDMADPNHPIHREL-AEIQARN 151
F P + P+ P P+ + A QA+N
Sbjct: 357 --PTPPFPP-MAQPVIP---PTPPVQQPFQASFQAQN 387
>WB|WBGene00017004 [details] [associations]
symbol:nrd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0040027 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
EMBL:FO080863 GeneTree:ENSGT00530000063946 KO:K13167
eggNOG:NOG326061 OMA:RAITISW RefSeq:NP_491403.1
ProteinModelPortal:O01864 SMR:O01864 STRING:O01864 PaxDb:O01864
EnsemblMetazoa:D1007.7 GeneID:172064 KEGG:cel:CELE_D1007.7
UCSC:D1007.7 CTD:172064 WormBase:D1007.7 HOGENOM:HOG000022265
InParanoid:O01864 NextBio:873863 Uniprot:O01864
Length = 988
Score = 292 (107.8 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 59/132 (44%), Positives = 80/132 (60%)
Query: 2 DVIKTFNQELSSLYDTKPPISXXXXXXXXXXXXXXXXFYKHVVQSVEKFIIKCKPEYKVP 61
+V+K+FN ELSSL+D+K +S YKHVV SVEK I KCKP+ ++
Sbjct: 4 EVMKSFNNELSSLFDSKN-MSKNKIQDITKAAIKAKSQYKHVVFSVEKLINKCKPDQRLN 62
Query: 62 ALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPPEDKSKIIRVLNLWQKNEV 121
LYVIDS+VR S+HQ ++KD FGPRF + L +C ++K + +R LNLW N+V
Sbjct: 63 VLYVIDSIVRASKHQLKEKDTFGPRFMKQFDKFLMPLLKCGQKEKMRTVRTLNLWMSNKV 122
Query: 122 FTPDIIHPLFDM 133
F I PL +M
Sbjct: 123 FKESEIQPLREM 134
Score = 169 (64.5 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 35/130 (26%), Positives = 63/130 (48%)
Query: 150 RNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAK 209
R G + S TLW+ + + E +L G+ + +I R CA++ M R+ A
Sbjct: 516 RIGFTIIASRTLWLKKIPTNIVENDLKQAVESCGEASRVKVIGNRACAYITMENRRSAND 575
Query: 210 ALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLEDG 269
+ K++ + K + + WA GM + D W+ GV IPY++L +D L +G
Sbjct: 576 VVSKMREVSVAKKMVKVYWARSPGMDSDQFSDLWDSNRGVLEIPYEKLP--LDLVALCEG 633
Query: 270 GVFDEDTVPL 279
+ D +++P+
Sbjct: 634 AMLDIESLPI 643
>RGD|727896 [details] [associations]
symbol:Scaf4 "SR-related CTD-associated factor 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:727896 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000143432 OrthoDB:EOG498V17 EMBL:U49058 IPI:IPI00211011
PIR:T31425 UniGene:Rn.101886 ProteinModelPortal:Q63627
STRING:Q63627 UCSC:RGD:727896 eggNOG:NOG326061 InParanoid:Q63627
ArrayExpress:Q63627 Genevestigator:Q63627
GermOnline:ENSRNOG00000002104 Uniprot:Q63627
Length = 1048
Score = 310 (114.2 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 59/136 (43%), Positives = 92/136 (67%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q ++ ++CSTTLW+G L K +++++ E+G + SIN+IPPRGCA++ M RQDA
Sbjct: 411 QIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDA 470
Query: 208 AKALYKLK--NTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL KL N K+ K+I +AWA KG+K D+K +W+V+ GV+YIP+D++ E + +
Sbjct: 471 YRALQKLSRGNYKVNQKSIKIAWALNKGIK-ADFKQYWDVELGVTYIPWDKVKAE-ELES 528
Query: 266 LEDGGVFDEDTV-PLW 280
+GG+ D DT+ P W
Sbjct: 529 FCEGGMLDSDTLNPDW 544
Score = 52 (23.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 56 PEYKVPALYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPP 103
P + P Y D + + + Q Q+ D F PR + + QH PP
Sbjct: 156 PPPQAPFGYPGDGMQQPAYTQHQNVDQFQPRMMALQQDSMQHQVPLPP 203
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 154 (59.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/104 (32%), Positives = 50/104 (48%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
QA G + +TT+++G L V EE L F YG++V + ++ + C FV R A
Sbjct: 271 QATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASA 330
Query: 208 AKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSY 251
+AL L T+L G++I L+W K D W G Y
Sbjct: 331 EQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQ-WGGSGGAYY 373
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 144 (55.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/87 (33%), Positives = 52/87 (59%)
Query: 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL 214
++ +TT+++G L V +E+L F E+G++VS+ + +GC FV R +A +AL KL
Sbjct: 300 DIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKL 359
Query: 215 KNTKLQGKTITLAWAPGKGMKDKDWKD 241
T + +T+ L+W G+ +K +D
Sbjct: 360 NGTVIGKQTVRLSW--GRNPANKQPRD 384
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 143 (55.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+TT+++G L V +E+L F E+G++VS+ + +GC FV R +A +AL KL T
Sbjct: 305 NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT 364
Query: 218 KLQGKTITLAWAPGKGMKDKDWKD 241
+ +T+ L+W G+ +K +D
Sbjct: 365 VIGKQTVRLSW--GRNPANKQPRD 386
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 120 (47.3 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGKTI 224
AFV M R +DA +A+ L NT+ QG+ I
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGRII 141
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 138 (53.6 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 35/119 (29%), Positives = 61/119 (51%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q +G + +TT+++G + + V E++L FG++G++V + + + C FV R A
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACA 326
Query: 208 AKALYKLKNTKLQGKTITLAWAPGKGMKDKDWK-DFWEVQDGVSYIPYDRLSKEIDYDY 265
+AL L T+L G++I L+W G+ +K + D + G Y Y E Y Y
Sbjct: 327 EQALSVLNGTQLGGQSIRLSW--GRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEA-YGY 382
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/93 (31%), Positives = 50/93 (53%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAA 208
A G + +TT+++G L V ++EL FG++G+++ + + P + C FV + A
Sbjct: 250 ANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAE 309
Query: 209 KALYKLKNTKLQGKTITLAW--APGKGMKDKDW 239
AL L T+L G++I L+W +P K W
Sbjct: 310 HALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 342
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 115 (45.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQG 221
AFV M R +DA +A+ L NT+ QG
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQG 138
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 115 (45.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQG 221
AFV M R +DA +A+ L NT+ QG
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQG 138
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 135 (52.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
++T+++G L V EE+L F ++G+VVS+ + +GC FV RQ A +A+ L T
Sbjct: 326 NSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGT 385
Query: 218 KLQGKTITLAWAPGKGMKDKDWK 240
+ T+ L+W G+ +K W+
Sbjct: 386 VIGKNTVRLSW--GRS-PNKQWR 405
>FB|FBgn0037220 [details] [associations]
symbol:CG14641 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:NOG277760
KO:K12872 GO:GO:0000381 HSSP:P33240 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AY061516 RefSeq:NP_649440.3 UniGene:Dm.3575
SMR:Q95RB1 IntAct:Q95RB1 MINT:MINT-289131 STRING:Q95RB1
EnsemblMetazoa:FBtr0078985 GeneID:40529 KEGG:dme:Dmel_CG14641
UCSC:CG14641-RA FlyBase:FBgn0037220 InParanoid:Q95RB1
OrthoDB:EOG4N5TC7 GenomeRNAi:40529 NextBio:819204 Uniprot:Q95RB1
Length = 418
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 135 DP-NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP 193
DP I + A + E+ TTL++G+L + + E EL D F ++G++ SI L+P
Sbjct: 207 DPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPR 266
Query: 194 RGCAFVCMNRRQDAAKALYKLKNTK-LQGKTITLAWA 229
+ CAFV +R A A + N +QG+ +++ WA
Sbjct: 267 QQCAFVQYTKRNAAELAAERTFNKLVIQGRKVSIKWA 303
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 112 (44.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDV----VSINLIPP--RGCAFVCMNRRQDA 207
+N + L++G + + + E+ L D F +GD+ V +N+ RG AFV DA
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDA 62
Query: 208 AKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFW 243
ALY + N +L GK I + ++ K K +K W
Sbjct: 63 KHALYNMNNFELNGKRIHVNYSKTK--KADHYKPIW 96
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 112 (44.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDV----VSINLIPP--RGCAFVCMNRRQDA 207
+N + L++G + + + E+ L D F +GD+ V +N+ RG AFV DA
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDA 62
Query: 208 AKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFW 243
ALY + N +L GK I + ++ K K +K W
Sbjct: 63 KHALYNMNNFELNGKRIHVNYSKTK--KADHYKPIW 96
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 133 (51.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
++T+++G LSK V EEEL F +G++V + + P +GC FV RQ A A+ +L+
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGY 361
Query: 218 KLQGKTITLAW 228
L I L+W
Sbjct: 362 PLGNSRIRLSW 372
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 132 (51.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+TT+++G L V +EEL +F ++G+VVS+ + +GC FV + R A +A+ KL
Sbjct: 294 NTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGA 353
Query: 218 KLQGKTITLAWAPGKGMKDKDWK 240
+ + + L+W G+ +K +
Sbjct: 354 IIGKQAVRLSW--GRSPANKQMR 374
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 129 (50.5 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 36/106 (33%), Positives = 54/106 (50%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
+H +H ++A ++ ST L +G++S EL F EYG V+ +++ +
Sbjct: 57 HHKLHGVCINVEASKN-KSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKGMK 235
AFV M R +DA +A+ L NT+ QGK T L APG G K
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMGDK 159
>WB|WBGene00011722 [details] [associations]
symbol:T11G6.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GeneTree:ENSGT00390000002792 EMBL:Z69384 PIR:T24851
RefSeq:NP_502014.2 ProteinModelPortal:Q22412 SMR:Q22412
STRING:Q22412 PaxDb:Q22412 EnsemblMetazoa:T11G6.8.1
EnsemblMetazoa:T11G6.8.2 GeneID:177979 KEGG:cel:CELE_T11G6.8
UCSC:T11G6.8.1 CTD:177979 WormBase:T11G6.8 InParanoid:Q22412
OMA:CAFVQYT NextBio:899214 Uniprot:Q22412
Length = 408
Score = 130 (50.8 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 159 TTLWIGHL----SKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL 214
TTL+IG+L ++ V E++L+D F +YGD+ + ++ +GCAF+ R+ A +A +
Sbjct: 235 TTLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERS 294
Query: 215 KN-TKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIP 253
N T ++GK +T+ W + + D ++ V +P
Sbjct: 295 FNKTFIKGKRLTIRWGEPQAKRAADNSNYVTPVPSVPILP 334
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 122 (48.0 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>TAIR|locus:2025077 [details] [associations]
symbol:MAC5A "MOS4-associated complex subunit 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0042742 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
ProtClustDB:CLSN2913258 EMBL:AC022464 EMBL:AY054519 EMBL:AY114632
IPI:IPI00518267 PIR:F86208 RefSeq:NP_563788.1 UniGene:At.25418
HSSP:P18615 ProteinModelPortal:Q9LNV5 SMR:Q9LNV5 IntAct:Q9LNV5
STRING:Q9LNV5 PaxDb:Q9LNV5 PRIDE:Q9LNV5 EnsemblPlants:AT1G07360.1
GeneID:837248 KEGG:ath:AT1G07360 TAIR:At1g07360 InParanoid:Q9LNV5
OMA:ILADKAC PhylomeDB:Q9LNV5 Genevestigator:Q9LNV5 Uniprot:Q9LNV5
Length = 481
Score = 127 (49.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTK- 218
TL++G L+ + E+++ D F +G++ SI ++ + CAFV R+ A KA +L N
Sbjct: 229 TLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 219 LQGKTITLAWAPGKGMKDKD 238
+ G+ + L W G+ D+D
Sbjct: 289 INGQRLKLTW--GRPKPDQD 306
>TAIR|locus:2146668 [details] [associations]
symbol:AT5G04210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL391716
eggNOG:NOG277760 KO:K12872 UniGene:At.27184 IPI:IPI00523206
RefSeq:NP_196041.1 UniGene:At.50700 ProteinModelPortal:Q9FYE0
SMR:Q9FYE0 EnsemblPlants:AT5G04210.1 GeneID:830300
KEGG:ath:AT5G04210 TAIR:At5g04210 InParanoid:Q9FYE0
PhylomeDB:Q9FYE0 Genevestigator:Q9FYE0 Uniprot:Q9FYE0
Length = 193
Score = 118 (46.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 154 ENMCSTTLWIGHL-SKLVQEEELSDTFGEYGDVVSINLIPPRG---CAFVCMNRRQDAAK 209
E+ TL+I L + V E+++ D F YG++ SI + P RG CAF+ R A K
Sbjct: 72 EDQSIKTLYIRRLINSSVLEQDIRDHFCPYGEIESIVIFPHRGGGTCAFLTYTTRLAAEK 131
Query: 210 ALYKLKN-TKLQGKTITLAWAPGKGMKDK 237
A+ +L + T ++G+ + L W P + + K
Sbjct: 132 AMLELSSWTDIKGQRVKLLWGPTEKWQHK 160
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 110 (43.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGKT 223
AFV M R +DA +A+ L NT+ Q +T
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQVET 140
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 28/87 (32%), Positives = 50/87 (57%)
Query: 141 HRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PR 194
++ L AR G E++ T L++ +L + + +++L FG+YG +V N++ PR
Sbjct: 193 NKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR 252
Query: 195 GCAFVCMNRRQDAAKALYKLKNTKLQG 221
G AFV N+R++A +A+ L N +G
Sbjct: 253 GVAFVRYNKREEAQEAISALNNVIPEG 279
>TAIR|locus:2043157 [details] [associations]
symbol:MAC5B "MOS4-associated complex subunit 5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004561 EMBL:AF428354
EMBL:BT002621 IPI:IPI00535091 PIR:A84698 RefSeq:NP_180518.1
UniGene:At.12692 ProteinModelPortal:Q9ZW36 SMR:Q9ZW36 PRIDE:Q9ZW36
EnsemblPlants:AT2G29580.1 GeneID:817507 KEGG:ath:AT2G29580
TAIR:At2g29580 eggNOG:NOG277760 HOGENOM:HOG000171086
InParanoid:Q9ZW36 KO:K12872 OMA:RNRAHIC PhylomeDB:Q9ZW36
ProtClustDB:CLSN2913258 Genevestigator:Q9ZW36 Uniprot:Q9ZW36
Length = 483
Score = 126 (49.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 32/108 (29%), Positives = 54/108 (50%)
Query: 137 NHPIHREL----AEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP 192
N P+ +L E+ E+ TL++G L+ V E+++ D F +G++ SI ++
Sbjct: 202 NDPVALKLLGKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILA 261
Query: 193 PRGCAFVCMNRRQDAAKALYKLKNTKL-QGKTITLAWA-PGKGMKDKD 238
+ CAFV R+ A KA +L N + G+ + L W P D+D
Sbjct: 262 EKACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGRPQVPKPDQD 309
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 123 (48.4 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+TT+++G L V ++ L + F +YG++V + + + C FV + + A +AL L
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGV 319
Query: 218 KLQGKTITLAWAPGKGMKDKDWKD 241
+L G T+ L+W G+ +K D
Sbjct: 320 QLGGTTVRLSW--GRSPSNKQSGD 341
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQ 220
AFV M R +DA +A+ L NT+ Q
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 122 (48.0 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 137 NHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC 196
++ +H ++A ++ ST L +G++S +EL F EYG V+ +++ +
Sbjct: 57 HYKLHGVNINVEASKN-KSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV--KDY 113
Query: 197 AFVCMNRRQDAAKALYKLKNTKLQGK-------TITLAWAPGKG 233
AFV M R +DA +A+ L NT+ QGK T L APG G
Sbjct: 114 AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMG 157
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 99 (39.9 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
S+TL++ +S EE L+ F +YG V+ +++I P+G A+V + +++A KAL
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 212 YKLKNTKLQGKTITL 226
+L + G+ + L
Sbjct: 80 LELNAQLVDGRVVIL 94
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+ T+++G + V +E+L F ++G+VVS+ + +GC FV R+ A A+ L T
Sbjct: 320 NATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGT 379
Query: 218 KLQGKTITLAWAPGKGMKDKDWK 240
+ T+ L+W G+ +K W+
Sbjct: 380 VIGKNTVRLSW--GRS-PNKQWR 399
>ASPGD|ASPL0000013024 [details] [associations]
symbol:AN8276 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0035649 "Nrd1 complex" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0001068 "transcription regulatory region RNA binding"
evidence=IEA] [GO:0042780 "tRNA 3'-end processing" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0071028
"nuclear mRNA surveillance" evidence=IEA] [GO:0031124 "mRNA 3'-end
processing" evidence=IEA] [GO:0071041 "antisense RNA transcript
catabolic process" evidence=IEA] [GO:0031126 "snoRNA 3'-end
processing" evidence=IEA] [GO:0034472 "snRNA 3'-end processing"
evidence=IEA] [GO:0030847 "termination of RNA polymerase II
transcription, exosome-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 PROSITE:PS51391 EMBL:AACD01000145
eggNOG:NOG306894 KO:K15560 OMA:MPTNSAR OrthoDB:EOG44F9K0
HOGENOM:HOG000159472 RefSeq:XP_681545.1 ProteinModelPortal:Q5ATV4
EnsemblFungi:CADANIAT00004336 GeneID:2869163 KEGG:ani:AN8276.2
Uniprot:Q5ATV4
Length = 720
Score = 103 (41.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 36/116 (31%), Positives = 56/116 (48%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
S TL++G ++ E L F +YG V + + + AF+ M RQDA A +++
Sbjct: 501 SRTLFVGGVTS--SEAHLRSLFSKYGVVQTCIVNVDKRHAFIKMISRQDAINAREGMESY 558
Query: 218 KLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYL---EDGG 270
K + W G G +D D+ Q G+S IP +RL+ E D ++ E GG
Sbjct: 559 KTGDMQLRTRW--GVGFGPRDCSDY---QTGISVIPIERLT-EADRKWMLTAEYGG 608
Score = 62 (26.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 24/94 (25%), Positives = 40/94 (42%)
Query: 43 VVQSVEKFIIKCKPEYKVPALYVIDSLVRQ----SRHQFQDKDVFGP--RFARN------ 90
++Q + K +K+ LYV+DS+ RQ +R Q P FA
Sbjct: 45 LIQKIYTHFKKAPGTHKLGVLYVVDSVTRQWLDAARKAGQPSGSAAPDGTFAAGVNRVTE 104
Query: 91 -LKATFQHLYQCPPED-KSKIIRVLNLWQKNEVF 122
L + PED K KI +++++W++ F
Sbjct: 105 LLPVLMTDIINNAPEDQKEKIKKLVDIWERGYTF 138
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
S LW+G L+ E +L++ FG YGD+ I + RG AF+ ++A A L+
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 218 KLQGKTITLAWA-PGKGMK 235
L G I + +A P K K
Sbjct: 77 NLNGSQIKIEYARPAKPCK 95
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 38/147 (25%), Positives = 68/147 (46%)
Query: 100 QCPPEDKSKIIRVLNLWQKNEVFTPDIIHPLFDMADPNHPIHRELAEIQARNGVENMCST 159
Q PP+ K V +K+ + + +H + + +HPI + A+ + N VE+
Sbjct: 91 QNPPQSKGCCF-VTYYTRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDR--- 146
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLI--PP---RGCAFVCMNRRQDAAKALYKL 214
L++G +SK E ++ F YG + ++ P RGCAFV RQ A A+ +
Sbjct: 147 KLFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSM 206
Query: 215 KNTK-LQGKTITLAWAPGKGMKDKDWK 240
++ ++G + + KDK+ K
Sbjct: 207 HQSQTMEGCSSPIVVKFADTQKDKEQK 233
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 96 (38.9 bits), Expect = 0.00020, P = 0.00020
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 172 EEELSDTFGEYGDVVSINLIPP-----RGCAFVCMNRRQDAAKALYKLKNTKLQGKTITL 226
+E L D FG++G +S+ ++ +G FV R +DA KA+ ++ +L GK I +
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 227 AWAPGKGMKDKDWKDFWEV--QDGVS-YIPYDRLSKEIDYDYLED 268
A K + + K +E QD ++ Y + K +D D ++D
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD-DGIDD 105
>POMBASE|SPBC29A3.07c [details] [associations]
symbol:sab14 "U2 snRNP-associated protein SF3B14
ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000384 "first spliceosomal transesterification activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
Uniprot:O59670
Length = 115
Score = 96 (38.9 bits), Expect = 0.00020, P = 0.00020
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSI---NLIPPRGCAFVCMNRRQDAAK 209
V ++ L+I +LS + EE+ D FG YG V I N + RG AFV QDA +
Sbjct: 6 VNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARR 65
Query: 210 ALYKL 214
A KL
Sbjct: 66 ACEKL 70
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 118 (46.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 24/97 (24%), Positives = 51/97 (52%)
Query: 132 DMADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI 191
D P+H + EI + +N T++++G+++ L E+E+ F +G + + +
Sbjct: 217 DQEKPSHYNEKSYDEIYNQTSGDN---TSVYVGNIASLT-EDEIRQGFASFGRITEVRIF 272
Query: 192 PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAW 228
+G AFV + + AAKA+ ++ N + G+ + +W
Sbjct: 273 KMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 309
Score = 37 (18.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 237 KDWKDFWEVQDG 248
+ W ++W+ Q G
Sbjct: 386 QQWSNYWQQQGG 397
>WB|WBGene00009141 [details] [associations]
symbol:ncbp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0040022 "feminization of
hermaphroditic germ-line" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0005635
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
GO:GO:0040022 eggNOG:COG0724 GO:GO:0006370 HOGENOM:HOG000217589
PANTHER:PTHR18847 HSSP:P52298 GeneTree:ENSGT00390000003197
EMBL:Z78419 PIR:T21382 RefSeq:NP_001250552.1 RefSeq:NP_001250553.1
RefSeq:NP_001250554.1 ProteinModelPortal:Q93594 STRING:Q93594
PaxDb:Q93594 GeneID:184953 KEGG:cel:CELE_F26A3.2 UCSC:F26A3.2
CTD:184953 WormBase:F26A3.2a WormBase:F26A3.2b WormBase:F26A3.2c
InParanoid:Q93594 OMA:YRTDYDV NextBio:926534 Uniprot:Q93594
Length = 158
Score = 105 (42.0 bits), Expect = 0.00030, P = 0.00030
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDV--VSINLI----PPRGCAFVCMNRRQDAAKAL 211
S TL++G+LS +E+++ + FG GDV V + L P G FV R+DA AL
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELAL 95
Query: 212 YKLKNTKLQGKTITLAWAPG 231
+ NT++ + I W G
Sbjct: 96 QNISNTRMDDRVIRADWDAG 115
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 147 IQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQD 206
+Q N + +TT+++G LS V E+EL F +GD+ + + P +GC FV R
Sbjct: 272 MQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHA 331
Query: 207 AAKALYKLKNTKLQGKTITLAW 228
A A+ +++ + + L+W
Sbjct: 332 AEMAINQMQGYPIGNSRVRLSW 353
>UNIPROTKB|Q7ZXB5 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0017069
KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:BC045067 RefSeq:NP_001080776.1
UniGene:Xl.4959 ProteinModelPortal:Q7ZXB5 SMR:Q7ZXB5 GeneID:380469
KEGG:xla:380469 Xenbase:XB-GENE-971204 Uniprot:Q7ZXB5
Length = 417
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 26/101 (25%), Positives = 50/101 (49%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYK 213
E+ TTL++G L + E EL + F ++G++ +I ++ + CAF+ RQ A A K
Sbjct: 227 EDKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEK 286
Query: 214 LKNTKL-QGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIP 253
N + G+ + + W + + K+ + G+ + P
Sbjct: 287 SFNKLIVNGRRLNVKWGRSQAARGKEREHDGSGDPGMKFEP 327
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 33/83 (39%), Positives = 44/83 (53%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
ST L +G++S +EL F EYG VV +++ + AFV M R +DA +A+ L NT
Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIV--KDYAFVHMERVEDAMEAISGLDNT 134
Query: 218 KLQGK-------TITLAWAPGKG 233
QGK T L APG G
Sbjct: 135 AFQGKLMSVKLSTSRLRTAPGMG 157
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 137 NHPIHREL---AEIQARNGV-ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP 192
N P+ +L A R V ++ TTL+IG L + V + EL + F ++G++ +I ++
Sbjct: 206 NDPVANKLLMRASTMPRLDVPDDKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQ 265
Query: 193 PRGCAFVCMNRRQDAAKALYKLKNTKL-QGKTITLAW-----APGKGMKD 236
+ CAF+ RQ A A K N + G+ + + W A GKG KD
Sbjct: 266 RQQCAFIQFATRQAAETAAEKSFNKLIINGRRLNVKWGRSQAARGKGEKD 315
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTK 218
TT+++G+++ Q++EL +G +V P RGCAFV + + AA A+ +L
Sbjct: 412 TTVYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFN 471
Query: 219 LQGKTITLAW 228
L G+ + W
Sbjct: 472 LNGRPLKCGW 481
>UNIPROTKB|F8WE16 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926546
ProteinModelPortal:F8WE16 SMR:F8WE16 Ensembl:ENST00000454815
ArrayExpress:F8WE16 Bgee:F8WE16 Uniprot:F8WE16
Length = 114
Score = 93 (37.8 bits), Expect = 0.00043, P = 0.00043
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 175 LSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWAPGKGM 234
+ TF +G ++ I + P +G +FV N + AA A+ + T ++G + W GK
Sbjct: 1 MRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW--GKET 58
Query: 235 KD 236
D
Sbjct: 59 LD 60
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 112 (44.5 bits), Expect = 0.00043, P = 0.00043
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINL-IPPR--GCAFVCMNRRQDAAKALYKL 214
S T+++G+L ++E E+ D F +YG VV I+L IPPR G AFV +DA A+Y
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 215 KNTKLQGKTITLAWAPG 231
G + + A G
Sbjct: 66 DGYDFDGHHLRVELAHG 82
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 112 (44.5 bits), Expect = 0.00052, P = 0.00052
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINL-IPPR--GCAFVCMNRRQDAAKALYKL 214
S T+++G+L ++E E+ D F +YG VV I+L +PPR G AFV + +DA A++
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 215 KNTKLQGKTITLAWAPGKGMKDKD 238
G + + A G G + D
Sbjct: 66 DGYDFDGHRLRVELAHG-GRRSSD 88
>SGD|S000006099 [details] [associations]
symbol:CBC2 "Small subunit of the heterodimeric cap binding
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0000339 "RNA cap
binding" evidence=IEA;ISS;IDA] [GO:0000243 "commitment complex"
evidence=IDA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000006099 GO:GO:0048471 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006949 GO:GO:0051028
GO:GO:0000398 GO:GO:0000243 eggNOG:COG0724 GO:GO:0000339
HOGENOM:HOG000217589 PANTHER:PTHR18847 GO:GO:0005846 KO:K12883
GeneTree:ENSGT00390000003197 OrthoDB:EOG4W11PG EMBL:U39665
EMBL:Z73534 EMBL:AY692949 PIR:S65190 RefSeq:NP_015147.1
ProteinModelPortal:Q08920 SMR:Q08920 DIP:DIP-1117N IntAct:Q08920
MINT:MINT-552911 STRING:Q08920 PaxDb:Q08920 EnsemblFungi:YPL178W
GeneID:855925 KEGG:sce:YPL178W CYGD:YPL178w OMA:CGFCFII
NextBio:980654 Genevestigator:Q08920 GermOnline:YPL178W
Uniprot:Q08920
Length = 208
Score = 108 (43.1 bits), Expect = 0.00058, P = 0.00058
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINL------IPPRGCAFVCMNRRQDA 207
E+M S+T+++G+LS EE++ + F + G + I + P G F+ + +A
Sbjct: 41 ESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEA 100
Query: 208 AKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLE 267
AL L +TKL KTIT+ PG +D + F + G ++S E+ +D+
Sbjct: 101 LNALKYLSDTKLDEKTITIDLDPGF----EDGRQFGRGKSG------GQVSDELRFDFDA 150
Query: 268 DGGVF 272
G F
Sbjct: 151 SRGGF 155
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 91 (37.1 bits), Expect = 0.00071, P = 0.00071
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-P-----RGCAFVCMNRRQDAAKALYKL 214
L++GH+S E++L F G V S+++I P +GC +V M ++A +A+ L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 215 KNTKLQGKTITLAWA-PGK 232
L+ + IT++ A P K
Sbjct: 65 DGALLRNRVITVSVARPQK 83
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 91 (37.1 bits), Expect = 0.00071, P = 0.00071
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-P-----RGCAFVCMNRRQDAAKALYKL 214
L++GH+S E++L F G V S+++I P +GC +V M ++A +A+ L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 215 KNTKLQGKTITLAWA-PGK 232
L+ + IT++ A P K
Sbjct: 65 DGALLRNRVITVSVARPQK 83
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 112 (44.5 bits), Expect = 0.00082, P = 0.00082
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDA 207
Q N + +TT+++G LS V E+EL F +G++ + + P +GC FV +R A
Sbjct: 275 QPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAA 334
Query: 208 AKALYKLKNTKLQGKTITLAW 228
A+ +++ + + L+W
Sbjct: 335 EMAINQMQGYPIGNSRVRLSW 355
>UNIPROTKB|Q6P616 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:RNRAHIC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:CR761977 EMBL:BC062518
RefSeq:NP_989108.1 UniGene:Str.5987 ProteinModelPortal:Q6P616
SMR:Q6P616 STRING:Q6P616 Ensembl:ENSXETT00000044114 GeneID:394713
KEGG:xtr:394713 Xenbase:XB-GENE-971198 InParanoid:Q6P616
Bgee:Q6P616 Uniprot:Q6P616
Length = 417
Score = 112 (44.5 bits), Expect = 0.00090, P = 0.00090
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYK 213
E+ TTL++G L + E EL + F ++G++ +I ++ + CAF+ RQ A A K
Sbjct: 227 EDKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEK 286
Query: 214 LKNTKL-QGKTITLAWAPGKGMKDKD 238
N + G+ + + W + + K+
Sbjct: 287 SFNKLIVNGRRLNVKWGRSQAARGKE 312
>GENEDB_PFALCIPARUM|PFL1200c [details] [associations]
symbol:PFL1200c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 90 (36.7 bits), Expect = 0.00092, P = 0.00092
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSI---NLIPPRGCAFVCMNRRQDAAKALYKL 214
S L++ +L + +EL D FG+YG V I N +G +FV + DA AL L
Sbjct: 13 SRILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHL 72
Query: 215 KNTKLQGK-TITLAWAPGKGMKDKD 238
+ G+ + L + P K K K+
Sbjct: 73 SGFNVAGRYLVVLYYDPVKAQKKKE 97
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 90 (36.7 bits), Expect = 0.00092, P = 0.00092
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAK 209
M +++G LS V +EL FG+YG++ LI R G AF+ + A +
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 210 ALYKLKNTKLQGKTI 224
A+ K LQG+ I
Sbjct: 75 AVSKANGIDLQGRKI 89
>UNIPROTKB|Q8I5G8 [details] [associations]
symbol:PFL1200c "Splicing factor 3b subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 90 (36.7 bits), Expect = 0.00092, P = 0.00092
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSI---NLIPPRGCAFVCMNRRQDAAKALYKL 214
S L++ +L + +EL D FG+YG V I N +G +FV + DA AL L
Sbjct: 13 SRILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHL 72
Query: 215 KNTKLQGK-TITLAWAPGKGMKDKD 238
+ G+ + L + P K K K+
Sbjct: 73 SGFNVAGRYLVVLYYDPVKAQKKKE 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 90 (36.7 bits), Expect = 0.00092, P = 0.00092
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 156 MCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAK 209
M +++G LS V +EL FG+YG++ LI R G AF+ + A +
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 210 ALYKLKNTKLQGKTI 224
A+ K LQG+ I
Sbjct: 75 AVSKANGIDLQGRKI 89
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 116 (45.9 bits), Expect = 0.00098, P = 0.00097
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRG---------CAFVCMNRRQDAA 208
+T L++G+L+ + E++L + FG YG + SI ++ PR C FV R+DA
Sbjct: 215 TTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSRKDAE 274
Query: 209 KALYKLKNTKLQGKTITLAW 228
+AL L + G + L W
Sbjct: 275 RALKTLNGRYIMGYEMRLGW 294
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 282 266 0.00094 114 3 11 22 0.47 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 89
No. of states in DFA: 618 (66 KB)
Total size of DFA: 229 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.97u 0.12s 23.09t Elapsed: 00:00:01
Total cpu time: 22.98u 0.12s 23.10t Elapsed: 00:00:01
Start: Thu Aug 15 13:17:16 2013 End: Thu Aug 15 13:17:17 2013