RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3994
(282 letters)
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 144
Score = 94.0 bits (233), Expect = 2e-24
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 16/134 (11%)
Query: 3 VIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPEYKVPA 62
++K FN L L PI IT +T+ A I ++ V ++E I KC P+ K+ A
Sbjct: 8 IVKDFNSILEELTFNSRPI----ITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYA 63
Query: 63 LYVIDSLVRQSRHQFQDKDVFGPRFARNLKATFQHLYQCPPED-KSKIIRVLNLWQKN-- 119
Y +DS+ + + F+RNL ++ Y ++K+I + LW
Sbjct: 64 FYALDSICKNVGSPYTI------YFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPND 117
Query: 120 ---EVFTPDIIHPL 130
+F + +
Sbjct: 118 TGLPLFEGSALEKI 131
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 66.1 bits (161), Expect = 1e-14
Identities = 16/72 (22%), Positives = 38/72 (52%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+ T++ G ++ + ++ + TF +G ++ I + P +G +FV + + AA A+ + T
Sbjct: 18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 77
Query: 218 KLQGKTITLAWA 229
++G + W
Sbjct: 78 TIEGHVVKCYWG 89
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 62.6 bits (152), Expect = 3e-13
Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 158 STTLWIGHLS-KLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
++ ++IG+L+ +V++ ++ F +YG +V ++ +G AFV ++A A+
Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--HKGFAFVQYVNERNARAAVAGEDG 72
Query: 217 TKLQGKTITLAWAPGK 232
+ G+ + + A
Sbjct: 73 RMIAGQVLDINLAAEP 88
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 61.2 bits (148), Expect = 1e-12
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP---RGCAFVCMNRRQDAAKALYKL 214
+ L+I +L + EE+ D FG+YG + I + RG A+V DA A L
Sbjct: 7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 66
Query: 215 KNTKLQGKTITLAWAPGKGMKDK 237
+ + + + + K
Sbjct: 67 SGFNVCNRYLVVLYYNANRAFQK 89
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 59.5 bits (144), Expect = 2e-12
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYK 213
+L++G L V E L + F G ++SI + G A+V + DA +AL
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 214 LKNTKLQGKTITLAWA 229
+ ++GK + + W+
Sbjct: 62 MNFDVIKGKPVRIMWS 77
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 59.6 bits (144), Expect = 3e-12
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGC------AFVCMNRRQDAAKAL 211
S TL++G+LS EE++ + F + GD+ I + + FV R DA A+
Sbjct: 7 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 212 YKLKNTKLQGKTITLAWAPGK 232
+ T+L + I W G
Sbjct: 67 RYINGTRLDDRIIRTDWDAGF 87
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 59.2 bits (143), Expect = 4e-12
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI-------PPRGCAFVCMNRRQDAAKA 210
++ + + ++ + E+ + F +G++ ++ L RG FV +QDA KA
Sbjct: 8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 67
Query: 211 LYKLKN-TKLQGKTITLAWAPGK 232
L + T L G+ + L WA +
Sbjct: 68 FNALCHSTHLYGRRLVLEWADSE 90
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 58.4 bits (141), Expect = 5e-12
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+ L++G+L + EEE+ F +YG + + +G F+ + R A A +L N
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM 67
Query: 218 KLQGKTITLAWAPGK 232
L+GK + + +A
Sbjct: 68 PLRGKQLRVRFACHS 82
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 57.3 bits (138), Expect = 1e-11
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDA 207
E++ T L++ +L + + +++L FG+YG +V N++ PRG AFV N+R++A
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 208 AKALYKLKNTKLQG--KTITLAWA 229
+A+ L N +G + +++ A
Sbjct: 62 QEAISALNNVIPEGGSQPLSVRLA 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 57.3 bits (138), Expect = 1e-11
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
+T L + +L + + + EL F G + + ++ G AFV D+ +A+
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 212 YKLKNTKLQGKTITLAWA-PG 231
L ++ K + +++A PG
Sbjct: 62 KVLNGITVRNKRLKVSYARPG 82
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 54.3 bits (130), Expect = 2e-10
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI-PPRGCAFVCMNRRQDAAKALYKLKN 216
+ TL +LS + E+EL + F + ++ ++ +G A++ DA K L + +
Sbjct: 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 75
Query: 217 TKLQGKTITLAWAPGKG 233
++ G++++L + KG
Sbjct: 76 AEIDGRSVSLYYTGEKG 92
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 53.9 bits (129), Expect = 3e-10
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 154 ENMCST-TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALY 212
+ M S L++ +L EE + F + R AFV + R+DA +A+
Sbjct: 3 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK 62
Query: 213 KLKNTKLQGKTITLAWA 229
L L G I + A
Sbjct: 63 ALNGKVLDGSPIEVTLA 79
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 53.0 bits (127), Expect = 4e-10
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLI-----PPRGCAFVCMNRRQDAAKALYKLK 215
L + +L V + ++ + F E+G + + G A V R+ DA KA+ +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 216 NTKLQGKTITLAWAP 230
L G+ + +
Sbjct: 63 GVPLDGRPMNIQLVT 77
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.5 bits (128), Expect = 4e-10
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
T+++G L + V E L + F + G VV+ ++ +G FV +DA A+
Sbjct: 9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 68
Query: 212 YKLKNTKLQGKTITLAWA 229
+ KL GK I + A
Sbjct: 69 KIMDMIKLYGKPIRVNKA 86
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 53.5 bits (128), Expect = 5e-10
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYK 213
+ +T LW+G L L+ F +G + +I+ + A++ A A K
Sbjct: 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK 72
Query: 214 LKNTKLQG--KTITLAWA---PGKG 233
++ L G + + + +A P G
Sbjct: 73 MRGFPLGGPDRRLRVDFAKSGPSSG 97
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 52.8 bits (126), Expect = 8e-10
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI---PPRGCAFVCMNRRQDAAKALYKL 214
+++G+L ++ +++ D F +YG + I+L AFV +DA A+Y
Sbjct: 14 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 73
Query: 215 KNTKLQGKTITLAWA-PGKG 233
G + + + G+G
Sbjct: 74 DGYDYDGYRLRVEFPRSGRG 93
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 52.9 bits (126), Expect = 1e-09
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFV-CMNRRQDAAKALYKLKNT 217
+ G L E+L F +G++ I+ + + + ++A N
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNG 71
Query: 218 KLQGKTITLAWAPGKGMKDKD-WKDFWEVQ 246
LQ + + W +G +K+ K E Q
Sbjct: 72 NLQLRNKEVTWEVLEGEVEKEALKKIIEDQ 101
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 52.0 bits (124), Expect = 1e-09
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKALY 212
L++ L K + ++EL F +YG +++ ++ + G F+ ++R +A +A+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 213 KLKNTKLQGKT--ITLAWA 229
L K G T IT+ +A
Sbjct: 67 GLNGQKPSGATEPITVKFA 85
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 52.5 bits (125), Expect = 1e-09
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 158 STTLWIGHLSKLVQEE-----ELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALY 212
S+ L + V E + F Y + + + AA A
Sbjct: 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARL 64
Query: 213 KLKNTKLQGKTITLAWAPGKGMKDK 237
+L T+ GK + L +A +
Sbjct: 65 RLHKTEFLGKEMKLYFAQTLHIGSS 89
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 51.9 bits (124), Expect = 1e-09
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
TL++ + L F +G+++ +++ PPR CAFV + + A +A+ +L T
Sbjct: 5 GNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 62
Query: 218 KLQGKTITLAWA 229
+++ + + A
Sbjct: 63 QVESVQLKVNIA 74
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 52.3 bits (124), Expect = 2e-09
Identities = 20/93 (21%), Positives = 31/93 (33%)
Query: 149 ARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAA 208
+G T + +L E+ +TF +G + + L A V +A
Sbjct: 1 GSSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEAR 60
Query: 209 KALYKLKNTKLQGKTITLAWAPGKGMKDKDWKD 241
KA L +K + L WAP K
Sbjct: 61 KAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKK 93
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 51.6 bits (123), Expect = 2e-09
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRG----CAFVCMNRRQDAAKALYK 213
TL++G+LS+ V E + F + G S +I FV +DAA AL
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA 67
Query: 214 LKNTKLQGKTITLAWA 229
+ K+ GK + + WA
Sbjct: 68 MNGRKILGKEVKVNWA 83
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 51.2 bits (122), Expect = 2e-09
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLI---------PPRGCAFVCMNRRQDAAKAL 211
L+I +L+ EE L F + G + S + G FV + + A KAL
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 212 YKLKNTKLQGKTITLAWA 229
+L+ + G + + +
Sbjct: 61 KQLQGHTVDGHKLEVRIS 78
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 50.8 bits (121), Expect = 3e-09
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL-KNTK 218
L+IG+LS V ++L FG+ ++ ++ G AFV + A +A+ L +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 219 LQGKTITLAWAPGKGMK 235
L GK + + ++ K ++
Sbjct: 63 LHGKIMEVDYSVSKKLR 79
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 50.9 bits (121), Expect = 3e-09
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-------PRGCAFVCMNRRQDAAKALYK 213
++IG+L + E+ L DTF +G ++ I +G AF+ + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 214 LKNTKLQGKTITLAWAPGKGMK 235
+ L + IT+++A K K
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 51.2 bits (122), Expect = 3e-09
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSI----NLIPPRGCAFVCMNRRQDAAKALYK 213
L + ++ ++ +L FG++G ++ + N +G FV DA +A K
Sbjct: 11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 70
Query: 214 LKNTKLQGKTITLAWAPGKGMKD 236
L T ++G+ I + A + M +
Sbjct: 71 LHGTVVEGRKIEVNNATARVMTN 93
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 50.8 bits (121), Expect = 3e-09
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
L++G L++ V ++ L F +GD+ I + RG AFV +DAA A+
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 212 YKLKNTKLQGKTITLAWAPGKGMKD 236
+ ++L G+TI + A +K+
Sbjct: 65 DNMNESELFGRTIRVNLAKPMRIKE 89
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 50.1 bits (119), Expect = 5e-09
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
S+ + + +L + +E+ D +Y + + AFV + + A A+
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKY-CYVDRNKRTAFVTLLNGEQAQNAIQMFHQY 63
Query: 218 KLQGKTITLAWAPGKGM 234
+GK + + P +
Sbjct: 64 SFRGKDLIVQLQPTDAL 80
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 49.6 bits (118), Expect = 7e-09
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSI-NLIPPRGCAFVCMNRRQDAAKALYKLKN 216
S+ +++G + + E+EL + F +YGDV+ + P R AFV Q A ++
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC--GED 62
Query: 217 TKLQGKTITLAWAPGKGMKDK 237
++G ++ ++ A K +
Sbjct: 63 LIIKGISVHISNAEPKHNSNS 83
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 49.6 bits (118), Expect = 9e-09
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP----PRGCAFVCMNRRQDAAKALYK 213
++I +L K + + L DTF +G+++S ++ +G FV ++ A +A+ K
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 67
Query: 214 LKNTKLQGKTITLAWA 229
+ L + + +
Sbjct: 68 MNGMLLNDRKVFVGRF 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 49.3 bits (117), Expect = 9e-09
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
+ L + LS E +L + F +YG + ++++ RG AFV DA +A
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 68
Query: 212 YKLKNTKLQGKTIT 225
+ +L G+ I
Sbjct: 69 ERANGMELDGRRIR 82
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 48.9 bits (116), Expect = 1e-08
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKALY 212
T L + +L + + +EE FG G++ S L+ + G FV +DA KA+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 213 KLKNTKLQGKTITLAWA 229
L +LQ KTI +++A
Sbjct: 63 TLNGLRLQTKTIKVSYA 79
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 48.9 bits (116), Expect = 1e-08
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
+ L+IG L + ++++ + +G + + NL+ +G AF +A+
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
Query: 212 YKLKNTKLQGKTITLAWA 229
L +L K + + A
Sbjct: 61 AGLNGMQLGDKKLLVQRA 78
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 48.4 bits (115), Expect = 2e-08
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKALYKL 214
++IG LS +E L + FG++G+V ++ G FV + K L
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 215 KNTKLQGKTITLAWA 229
+L KTI A
Sbjct: 62 SRHELDSKTIDPKVA 76
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 48.9 bits (116), Expect = 2e-08
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKAL 211
S L++ +LS EE+L F YG + ++ G AFV + A KA
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 212 YKLKNTKLQGKTITLAWAPGK 232
++ QG+ + + + K
Sbjct: 68 AEVDGQVFQGRMLHVLPSTIK 88
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 48.5 bits (115), Expect = 2e-08
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 158 STTLWIGHLSKLVQEEEL----SDTFGEYGDVVSINL---IPPRGCAFVCMNRRQDAAKA 210
+ T++I +L++ ++++EL F +G ++ I + + RG AFV A A
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 211 LYKLKNTKLQGKTITLAWA 229
L ++ K + + +A
Sbjct: 63 LRSMQGFPFYDKPMRIQYA 81
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 48.2 bits (114), Expect = 3e-08
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNR------RQDAAKAL 211
L++ + + QE+E+ + F +YG++ +I+L R F + A A
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 212 YKLKNTKLQGKTITLAWAPGKG 233
L ++ G+TI + W KG
Sbjct: 67 EALNGAEIMGQTIQVDWCFVKG 88
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 48.5 bits (115), Expect = 3e-08
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP--------PRGCAFVCMNRRQDAAKA 210
L+IG + K+ + EE+ + + + V ++ RG AFV + AA A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 211 LYKL--KNTKLQGKTITLAWAPGKGMKDKD 238
KL +L G I + WA + D+D
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAEPEIDVDED 91
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 48.6 bits (115), Expect = 3e-08
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKAL--YKLK 215
S + + L + V E +L + ++G + + ++P + A V A + +
Sbjct: 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 74
Query: 216 NTKLQGKTITLAWAPGK 232
+ G+ ++ K
Sbjct: 75 PVYIAGQQAFFNYSTSK 91
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.7 bits (113), Expect = 4e-08
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMNRRQDAAKAL 211
+ T+ + +LS+ +E +L + F +G + I L +G AF+ +RR+DAA+A+
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 67
Query: 212 YKLKNTKLQGKTITLAWA 229
+ + + WA
Sbjct: 68 AGVSGFGYDHLILNVEWA 85
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 47.8 bits (113), Expect = 5e-08
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
S + G L V +L + G V ++ + P + +F +++ +A L
Sbjct: 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK 79
Query: 218 KL---QGKTITLAWA 229
++ G+ ITL
Sbjct: 80 EVVDDLGQKITLYLN 94
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.3 bits (112), Expect = 5e-08
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKAL 211
++ L + L E++L + F +G+V+ + + G FV + K +
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 67
Query: 212 YKLKNTKLQGKTITLAWAPGKGMKD 236
+ + G+ K +D
Sbjct: 68 SQRH--MIDGRWCDCKLPNSKQSQD 90
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 47.7 bits (113), Expect = 5e-08
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI--PPRGCAFVCMNRRQDAAKALYKLKN 216
+ + +L V + L F ++G V+ I + A + A A L
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 67
Query: 217 TKLQGKTITLAWAPGK 232
+ TL K
Sbjct: 68 QNIYNACCTLRIDFSK 83
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.4 bits (112), Expect = 8e-08
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
L+I HL + +++L F +G+VVS + + FV + A A+
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 77
Query: 212 YKLKNTKLQGKTITLAWAPGK 232
+ ++ K + + K
Sbjct: 78 QSMNGFQIGMKRLKVQLKRSK 98
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 47.4 bits (112), Expect = 9e-08
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
L+IG LS EE L + + ++G + ++ RG FV + + A+
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 212 YKLKNTKLQGKTITLAWA 229
+ + G+ + A
Sbjct: 80 -AARPHSIDGRVVEPKRA 96
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 45.3 bits (107), Expect = 4e-07
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 172 EEELSDTFGEYGDVVSINLI--PPRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229
E+L ++G + + L P G A V ++A + L G+ IT
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
Query: 230 PGK 232
G
Sbjct: 93 DGT 95
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 45.1 bits (106), Expect = 4e-07
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----------PRGCAFVCMNRRQDAA 208
L++G++ + EE + D F + + P + AF+ +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 209 KALYKLKNTKLQGKTI 224
+A+ QG+++
Sbjct: 63 QAMA-FDGIIFQGQSL 77
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.5 bits (107), Expect = 4e-07
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
T ++G+L V EE + + F +G + AL
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74
Query: 212 YKLKNTKLQGKTITLAWAPGKGMKDK 237
L L K I + A KD
Sbjct: 75 -SLNEESLGNKRIRVDVADQAQDKDS 99
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 44.7 bits (105), Expect = 5e-07
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
T + + ++ V +E+ D F Y + + P G A V R +A A+
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 68
Query: 212 YKLKNTKLQGKTITLAWA 229
L + + + + L
Sbjct: 69 IDLNDRPIGSRKVKLVLG 86
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 44.0 bits (103), Expect = 7e-07
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALY 212
TLW+ + + + D + V +P R A++ + ++DA +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 213 KLKNTKLQGKTITLAWA 229
KL K++G T+ +
Sbjct: 62 KLNGLKIEGYTLVTKVS 78
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 44.4 bits (104), Expect = 9e-07
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP--------------PRGCAFVCMNR 203
++ +++ L+ V ++L+D F + G V P+G A V
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 67
Query: 204 RQDAAKALYKLKNTKLQGKTITLAWA 229
A A+ QG + ++ A
Sbjct: 68 PPTAKAAVEWFDGKDFQGSKLKVSLA 93
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 44.0 bits (103), Expect = 1e-06
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYK 213
++++G++ EE+L D F E G VVS L+ P+G F ++ A A+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 214 LKNTKLQGKTITLAWAPGKGMKDK 237
L + G+ + + A + K++
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEE 93
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 43.6 bits (102), Expect = 2e-06
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNT 217
+ + L ++L D V + G V R++D AL KL +T
Sbjct: 15 DFRVLVSGLPPSGSWQDLKD-HMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDT 73
Query: 218 KLQGKTITLAWA 229
K + ++
Sbjct: 74 KFRSHEGETSYI 85
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 43.1 bits (101), Expect = 2e-06
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKALYK 213
L+IG LS +E L F ++G + ++ RG FV ++ A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 214 LKNTKLQGKTITLAWA 229
+ K+ G+ + A
Sbjct: 67 ARPHKVDGRVVEPKRA 82
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 43.5 bits (102), Expect = 2e-06
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSI------NLIPPRGCAFVCMNRRQDA 207
E + T++ L+ ++ +L D F G V + N +G A+V Q
Sbjct: 14 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 73
Query: 208 AKALYKLKNTKLQGKTITLAWA 229
A+ L +L G I + +
Sbjct: 74 PLAI-GLTGQRLLGVPIIVQAS 94
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 43.1 bits (101), Expect = 2e-06
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI-----PPRGCAFVCMNRRQDAAKALYK 213
+ + + EE ++ +YG+V +N+ G +V R +DA KA+
Sbjct: 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID 87
Query: 214 LKNTKLQGKTITLAWAP 230
L N G+ I +P
Sbjct: 88 LNNRWFNGQPIHAELSP 104
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 42.6 bits (99), Expect = 3e-06
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 148 QARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMN 202
G E+ L+IG+L+ EL E + ++ R +V
Sbjct: 3 HMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFE 62
Query: 203 RRQDAAKALYKLKNTKLQGKTITLAWAPGK 232
+D KAL L K+ G I L G+
Sbjct: 63 SAEDLEKALE-LTGLKVFGNEIKLEKPKGR 91
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 42.3 bits (99), Expect = 3e-06
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKALYKL 214
+++G LS EE++ + FG +G+V SI L G F+ + K + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM-EK 60
Query: 215 KNTKLQGKTITLAWA 229
K + + A
Sbjct: 61 KYHNVGLSKCEIKVA 75
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 41.9 bits (98), Expect = 3e-06
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSI------NLIPPRGCAFVCMNRRQDAAKALYKL 214
++IG LS +++L D F ++G+VV RG FV + K +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQ 60
Query: 215 KNTKLQGKTIT 225
K KL GK I
Sbjct: 61 KEHKLNGKVID 71
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 41.7 bits (97), Expect = 6e-06
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP------RGCAFVCMNRRQDAAKAL 211
L++G LS E+ L F +YG + + ++ RG FV DA A+
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 212 YKLKNTKLQGKTITLAWAPGK 232
+ + G+ I + A
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 42.0 bits (98), Expect = 6e-06
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKALY 212
T +++G L + L F +GD+ +I R G FV M R A +A
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC- 69
Query: 213 KLKNTKLQGKTITLAWAPGK 232
K N + G+ + A
Sbjct: 70 KDPNPIIDGRKANVNLAYLG 89
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 42.1 bits (98), Expect = 6e-06
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 158 STTLWIGHLS-KLVQEEELSDTFGEYGDVVSINLIPPRG-CAFVCMNRRQDAAKALYKLK 215
++ L + +L+ + V + L FG YGDV + ++ + A V M A A+ L
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN 61
Query: 216 NTKLQGKTITLAWA 229
KL GK I + +
Sbjct: 62 GHKLHGKPIRITLS 75
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 40.1 bits (93), Expect = 1e-05
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINL------IPPRGCAFVCMNRRQDAAKALYKL 214
+++G LS E++ F ++G V L RG FV K ++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EI 60
Query: 215 KNTKLQGKTITLAWA 229
++ K + A
Sbjct: 61 HFHEINNKMVECKKA 75
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 42.3 bits (98), Expect = 2e-05
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLI------PPRGCAFVCMNRRQDAAKALYK 213
L+IG LS +E L F ++G + ++ RG FV ++ A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 214 LKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYIPYDRLSKEIDYDYLEDGGVFD 273
+ K+ G+ + A + + + V I D + + + G +
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 126
Score = 42.3 bits (98), Expect = 2e-05
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 133 MADPNHPIHRELAEIQARNGVENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP 192
+ R ++ ++ ++ +++G + + +E L D F +YG + I ++
Sbjct: 72 VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT 131
Query: 193 ------PRGCAFVCMNRRQDAAKALYKLKNTKLQGKTITLAWA 229
RG AFV + K + K + G + A
Sbjct: 132 DRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCEVRKA 173
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 40.9 bits (95), Expect = 2e-05
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
+ L++ +LS V E +L F + + + RG AF+ ++ A +AL
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQAL 77
Query: 212 YKLKNTKLQGKTITLAWAPGK 232
+ + KL GK + + + K
Sbjct: 78 HLVNGYKLYGKILVIEFGKNK 98
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 39.7 bits (92), Expect = 3e-05
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 158 STTLWIGHL-SKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKAL--YKL 214
+ I +L +G + + ++ AF+ M +DA A+ Y
Sbjct: 8 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTT 67
Query: 215 KNTKLQGKTITLAWA 229
+ GK + + +
Sbjct: 68 TPALVFGKPVRVHLS 82
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.7 bits (89), Expect = 6e-05
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKAL-- 211
+ S L I L V E E+ +G V +I ++ + AF+ + + A +
Sbjct: 4 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNY 63
Query: 212 YKLKNTKLQGKTITLAWAPGKGMK 235
Y L+ + I + ++ K +K
Sbjct: 64 YSAVTPHLRNQPIYIQYSNHKELK 87
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.6 bits (89), Expect = 6e-05
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI--PPRGCAFVCMNRRQDAAKALYKLK 215
S TL + ++ V EE+L F G VV R A + M ++A +AL L
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH 69
Query: 216 NTKL-QGKTITLAWA 229
N L + + ++++
Sbjct: 70 NHDLGENHHLRVSFS 84
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 39.9 bits (92), Expect = 7e-05
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRR------QDAAKAL 211
L + ++ V E +L F YG + S+ ++ R A +A+
Sbjct: 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAI 101
Query: 212 YKLKNTKLQGKTITLAWAPGKGMKDKDWKDFWEVQDGVSYI 252
L + K + +A A + V DG Y+
Sbjct: 102 AGLNGFNILNKRLKVALAASGHQRPGIAGA---VGDGNGYL 139
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 37.9 bits (87), Expect = 1e-04
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVV-SINLIPPRGCAFVCMNRRQDAAKALYKLKN 216
+ L++ +L + E LS F ++ + AFV + A L+
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQG 67
Query: 217 TKL-QGKTITLAWA 229
K+ + + +A
Sbjct: 68 FKITPTHAMKITFA 81
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 37.5 bits (86), Expect = 2e-04
Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 152 GVENMCSTTLWIGHLSKLVQEEELSDTF---GEYGDVVSINLI---------PPRGCAFV 199
V + +++ LS+ + + E+ G++G + + + P A+V
Sbjct: 2 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYV 61
Query: 200 CMNRRQDAAKALYKLKNTKLQGKTI 224
R +DA +A+ + N + G+T+
Sbjct: 62 TYIRSEDALRAIQCVNNVVVDGRTL 86
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 37.8 bits (87), Expect = 2e-04
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGD-----VVSINLIPPRGCAFVCMNRRQDAAKALY 212
T L+I +L + E+EL + +G ++ + RG F M + +
Sbjct: 18 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIG 77
Query: 213 KLKNTKLQGKTITLAWA 229
++ A
Sbjct: 78 HFNGKFIKTPPGVSAPT 94
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.3 bits (86), Expect = 3e-04
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 153 VENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLI--------PPRGCAFVCMNRR 204
+ NM + E++ D +YG V SI + P G FV
Sbjct: 9 LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSV 68
Query: 205 QDAAKALYKLKNTKLQGKTITLAWAPGKGMKDKDWKDFW 243
D KA+ L K + + + +DFW
Sbjct: 69 FDCQKAMQGLTGRKFANRVVVTKYCD---PDSYHRRDFW 104
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 36.3 bits (83), Expect = 4e-04
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRG------CAFVCMNRRQDAAKALYKL 214
L+I L +++L YG +VS I + FV + A KA+ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 215 KNTKLQGKTI 224
K + +Q +
Sbjct: 61 KASGVQAQMA 70
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 36.1 bits (83), Expect = 5e-04
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 155 NMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKL 214
++ T + + + L F +YG+++ + + + A KAL
Sbjct: 1 HLDDTWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SK 58
Query: 215 KNTKLQGKTI 224
+
Sbjct: 59 DGRIFGESIM 68
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 35.9 bits (82), Expect = 7e-04
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 158 STTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP------PRGCAFVCMNRRQDAAKAL 211
T++I +LS +EE L + ++GD+ + ++ +GCAF ++ A K L
Sbjct: 8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
Query: 212 YKL------KNTKLQGKTITLAWAPGK 232
KL G+ + + A +
Sbjct: 68 AAASLEAEGGGLKLDGRQLKVDLAVTR 94
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 35.1 bits (80), Expect = 0.001
Identities = 10/81 (12%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 154 ENMCSTTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIP-----PRGCAFVCMNRRQDAA 208
++ + +++I +++ + + G V++I + +G FV + + A
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAK 61
Query: 209 KALYKLKNTKLQGKTITLAWA 229
K + + K + + + +
Sbjct: 62 KFV-ETPGQKYKETDLLILFK 81
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 32.1 bits (72), Expect = 0.010
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 159 TTLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPP----RGCAFVCMNRRQDAAKALYKL 214
TT+ + +L K + ++ F G ++ +++ A + R A A+
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TK 59
Query: 215 KNTKLQGKTIT 225
+ + I
Sbjct: 60 THKVVGQNEII 70
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 29.3 bits (65), Expect = 0.11
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 160 TLWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPR------GCAFVCMNRRQDAAKALYK 213
+++G + + +E L D F +YG + I ++ R G AFV + K +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-I 62
Query: 214 LKNTKLQGKTITLAWA 229
K + G + A
Sbjct: 63 QKYHTVNGHNCEVRKA 78
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 28.3 bits (62), Expect = 0.26
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 161 LWIGHLSKLVQEEELSDTFGEYGDVVSINLIPPRGCAFVCMNRRQDAAKALYKLKNTKLQ 220
+ I L V +E+ D +Y ++ + +G AFV + + A A+ ++L+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLR 59
Query: 221 GKTITLAWAP 230
+ +++ P
Sbjct: 60 ERELSVQLQP 69
>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase,
catalytic domain {Alcaligenes faecalis [TaxId: 511]}
Length = 358
Score = 28.6 bits (63), Expect = 0.74
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 246 QDGVSYIPYDRLSKEIDYDYLEDGGVFDEDTVPLWLK 282
G+S P + D L++GG F +L+
Sbjct: 34 NCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLE 70
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 24.5 bits (53), Expect = 5.0
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 1 MDVIKTFNQELSSLYDTKPPISKAKITAITRSAIRAIKFYKHVVQSVEKFIIKCKPE 57
++ ++L L P S+ ++ A IK + + I + + E
Sbjct: 13 RAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528
(TT1805) {Thermus thermophilus [TaxId: 274]}
Length = 127
Score = 25.3 bits (55), Expect = 5.9
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 69 LVRQSRHQFQDKDVFGPRFARNLKA 93
L+ + D FGP F +A
Sbjct: 49 LLHTGKKDLLVPDAFGPAFPGGEEA 73
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 23.9 bits (51), Expect = 8.9
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 109 IIRVLNLWQKNEVFTPDIIHPLFDMAD--PNHPIHRELAEIQARNGVE 154
+ W T A PN+ + +A NG+E
Sbjct: 31 ERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,125,619
Number of extensions: 53548
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 92
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)