Query psy3995
Match_columns 67
No_of_seqs 106 out of 883
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:40:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 8.1E-32 2.8E-36 161.2 1.1 63 5-67 1-63 (106)
2 2ldu_A Heat shock factor prote 100.0 4E-31 1.4E-35 162.3 3.6 66 2-67 11-76 (125)
3 3hts_B Heat shock transcriptio 100.0 1.7E-31 5.9E-36 159.5 1.5 65 3-67 7-71 (102)
4 1fli_A FLI-1; transcription/DN 97.1 0.00049 1.7E-08 40.3 3.7 41 8-48 5-45 (98)
5 1awc_A Protein (GA binding pro 97.0 0.00065 2.2E-08 40.6 3.5 37 13-49 5-41 (110)
6 1wwx_A E74-like factor 5 ESE-2 97.0 0.0012 4E-08 39.3 4.5 47 2-48 2-50 (107)
7 2ypr_A Protein FEV; transcript 97.0 0.00096 3.3E-08 39.3 3.9 42 7-48 6-47 (102)
8 1bc8_C SAP-1, protein (SAP-1 E 96.9 0.00048 1.6E-08 40.0 2.4 41 9-49 5-45 (93)
9 4avp_A ETS translocation varia 96.8 0.0015 5.2E-08 38.7 3.9 39 10-48 13-51 (106)
10 1gvj_A C-ETS-1 protein, P54; t 96.8 0.0011 3.6E-08 41.4 3.3 44 6-49 37-80 (146)
11 2dao_A Transcription factor ET 96.7 0.0016 5.5E-08 39.3 3.6 46 4-49 4-50 (118)
12 2nny_A C-ETS-1 protein, P54; p 96.6 0.0015 5.1E-08 41.6 3.2 44 6-49 62-105 (171)
13 1yo5_C SAM pointed domain cont 96.6 0.0015 5E-08 38.2 2.8 46 3-48 5-52 (97)
14 1hbx_G ETS-domain protein ELK- 95.9 0.0025 8.7E-08 40.0 1.3 42 9-50 6-47 (157)
15 3jtg_A ETS-related transcripti 95.9 0.0078 2.7E-07 35.4 3.3 39 10-48 6-46 (103)
16 1pue_E Protein (transcription 95.5 0.011 3.6E-07 34.0 2.8 36 13-48 6-44 (89)
17 2lf8_A Transcription factor ET 93.7 0.0058 2E-07 37.3 0.0 36 13-48 9-45 (128)
18 3ctr_A Poly(A)-specific ribonu 74.6 1.4 4.9E-05 25.6 1.6 28 25-52 31-58 (101)
19 1whv_A Poly(A)-specific ribonu 73.6 1 3.5E-05 26.2 0.8 28 25-52 41-68 (100)
20 1sz7_A BET3 homolog, trafficki 65.0 6.9 0.00024 25.0 3.4 49 14-63 90-140 (200)
21 3cue_D Transport protein parti 63.1 2.7 9.4E-05 26.7 1.2 53 10-63 88-144 (193)
22 1pp7_U 39 kDa initiator bindin 52.8 12 0.00043 22.5 2.8 44 5-51 28-77 (131)
23 3eat_X Pyoverdine biosynthesis 31.6 29 0.001 22.5 2.3 33 7-41 223-255 (293)
24 3qu3_A IRF-7, interferon regul 29.9 49 0.0017 20.0 2.9 38 1-39 4-43 (137)
25 2kkc_A Sequestosome-1; P62, PB 29.1 59 0.002 18.5 3.1 24 26-49 63-87 (102)
26 2gop_A Trilobed protease; beta 28.7 32 0.0011 21.3 2.0 16 26-41 107-122 (347)
27 1nx8_A CARC, carbapenem syntha 25.5 45 0.0015 21.0 2.3 31 10-41 216-246 (273)
28 3ho6_A Toxin A; inositol phosp 25.3 31 0.0011 23.1 1.5 33 10-42 220-252 (267)
29 2z3z_A Dipeptidyl aminopeptida 25.0 57 0.002 22.6 2.9 16 26-41 184-199 (706)
30 3pvj_A Alpha-ketoglutarate-dep 24.3 31 0.0011 22.3 1.4 32 9-42 217-248 (277)
31 1y6u_A XIS, excisionase from t 23.8 55 0.0019 17.1 2.1 31 13-47 31-62 (70)
32 2ktr_A Sequestosome-1; autopha 23.2 86 0.0029 18.3 3.1 39 11-49 62-102 (117)
33 3r1j_A Alpha-ketoglutarate-dep 23.0 34 0.0012 22.5 1.4 32 9-42 221-252 (301)
34 4gq1_A NUP37; propeller, trans 23.0 45 0.0016 21.5 2.0 15 27-41 364-378 (393)
35 1y0n_A Hypothetical UPF0270 pr 22.9 76 0.0026 17.3 2.6 34 12-47 40-73 (78)
36 1z68_A Fibroblast activation p 22.7 44 0.0015 23.3 2.0 15 26-40 172-186 (719)
37 3rmh_A Yeast CDC13 OB4; OB fol 22.6 24 0.00081 21.0 0.5 14 23-36 110-123 (149)
38 2l9b_B MRNA 3'-END-processing 22.1 34 0.0012 17.5 1.0 10 49-58 17-28 (53)
39 2xdw_A Prolyl endopeptidase; a 21.8 47 0.0016 23.4 2.0 15 26-40 174-188 (710)
40 1jya_A YOPE regulator; specifi 21.5 71 0.0024 19.2 2.5 22 23-44 73-94 (130)
41 4a5s_A Dipeptidyl peptidase 4 21.3 44 0.0015 23.8 1.8 14 27-40 175-188 (740)
42 3sre_A PON1, serum paraoxonase 20.4 56 0.0019 22.0 2.1 20 24-43 222-241 (355)
43 4hjh_A Phosphomannomutase; str 20.4 1.1E+02 0.0038 21.2 3.7 34 10-43 225-258 (481)
44 1xfd_A DIP, dipeptidyl aminope 20.2 54 0.0018 22.7 2.0 16 26-41 176-191 (723)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=99.96 E-value=8.1e-32 Score=161.24 Aligned_cols=63 Identities=70% Similarity=1.188 Sum_probs=60.8
Q ss_pred CCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995 5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67 (67)
Q Consensus 5 ~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN 67 (67)
+.++|+|+.|||+||+||+++++|+|+++|++|+|+|+++|+++|||+||+|+||+||+||||
T Consensus 1 g~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN 63 (106)
T 1hks_A 1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN 63 (106)
T ss_dssp CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhh
Confidence 467889999999999999999999999999999999999999999999999999999999998
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.96 E-value=4e-31 Score=162.35 Aligned_cols=66 Identities=59% Similarity=1.035 Sum_probs=63.2
Q ss_pred CCCCCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995 2 AEVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67 (67)
Q Consensus 2 ~~~~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN 67 (67)
+.+....++|+.|||+||+||+++++|+|+++|++|+|.|+++|+++|||+||+|+||+||+||||
T Consensus 11 ~~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN 76 (125)
T 2ldu_A 11 MAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLN 76 (125)
T ss_dssp CCSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred cccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhc
Confidence 356788999999999999999999999999999999999999999999999999999999999998
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.96 E-value=1.7e-31 Score=159.45 Aligned_cols=65 Identities=45% Similarity=0.889 Sum_probs=60.8
Q ss_pred CCCCCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhcccccCCCCcccceeccC
Q psy3995 3 EVGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67 (67)
Q Consensus 3 ~~~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RqLN 67 (67)
.|+..+|+|+.|||+||+|++++++|+|+++|++|+|+|+++|+++|||+||+|++|+||+||||
T Consensus 7 ~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN 71 (102)
T 3hts_B 7 VGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 71 (102)
T ss_dssp ---CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999999999998
No 4
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=97.12 E-value=0.00049 Score=40.33 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=33.4
Q ss_pred cchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995 8 VAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE 48 (67)
Q Consensus 8 ~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~ 48 (67)
....-+=|.++|+|++..++|+|...+.-|.+.|+++.++.
T Consensus 5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArl 45 (98)
T 1fli_A 5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARR 45 (98)
T ss_dssp SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHH
T ss_pred ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHH
Confidence 33445556777899999999999998889999999888774
No 5
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=97.01 E-value=0.00065 Score=40.58 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=31.7
Q ss_pred HHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995 13 GKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL 49 (67)
Q Consensus 13 ~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v 49 (67)
+=|.++|+|+++.++|+|...+.-|.+.|+++.++.-
T Consensus 5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlW 41 (110)
T 1awc_A 5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKW 41 (110)
T ss_dssp HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHH
T ss_pred HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHH
Confidence 4477889999999999999998899999998887643
No 6
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=97.00 E-value=0.0012 Score=39.29 Aligned_cols=47 Identities=13% Similarity=0.290 Sum_probs=38.0
Q ss_pred CCCCCCcchHHHHHHHhhcCCC-CCCceEEcCC-CCeEEEechhhHHHh
Q psy3995 2 AEVGTNVAAFLGKLWRMVEDPE-TNDLISWSEN-GQSFLIRNQSKFAKE 48 (67)
Q Consensus 2 ~~~~~~~~~F~~kL~~~l~~~~-~~~~I~W~~~-G~~f~I~d~~~f~~~ 48 (67)
++|+.+....-+=|.++|.|++ ..++|+|... ..-|.+.|+++.++.
T Consensus 2 ~sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArl 50 (107)
T 1wwx_A 2 SSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKM 50 (107)
T ss_dssp CCCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHH
T ss_pred CCCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHH
Confidence 4577778888888999999886 5689999874 567888999888774
No 7
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=96.96 E-value=0.00096 Score=39.32 Aligned_cols=42 Identities=14% Similarity=0.315 Sum_probs=34.1
Q ss_pred CcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995 7 NVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE 48 (67)
Q Consensus 7 ~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~ 48 (67)
+.-..-+=|.++|+|+++.++|+|...+.-|.+.|+++.++.
T Consensus 6 g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArl 47 (102)
T 2ypr_A 6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARR 47 (102)
T ss_dssp SSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHH
T ss_pred CcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHH
Confidence 334455667888999998999999988889999999888764
No 8
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=96.93 E-value=0.00048 Score=40.02 Aligned_cols=41 Identities=17% Similarity=0.443 Sum_probs=33.6
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995 9 AAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL 49 (67)
Q Consensus 9 ~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v 49 (67)
...-+=|.++|+|++..++|+|...+.-|.+.|+++.++.-
T Consensus 5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlW 45 (93)
T 1bc8_C 5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLW 45 (93)
T ss_dssp CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHH
T ss_pred ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHH
Confidence 34455678899999999999998888889999998887743
No 9
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=96.80 E-value=0.0015 Score=38.69 Aligned_cols=39 Identities=21% Similarity=0.516 Sum_probs=33.2
Q ss_pred hHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHh
Q psy3995 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE 48 (67)
Q Consensus 10 ~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~ 48 (67)
...+=|.++|+|+++.++|+|...+..|.+.|+++.++.
T Consensus 13 ~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~l 51 (106)
T 4avp_A 13 QLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARR 51 (106)
T ss_dssp CHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHH
T ss_pred eHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHH
Confidence 455667888999999999999999889999999887764
No 10
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=96.80 E-value=0.0011 Score=41.36 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=37.0
Q ss_pred CCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995 6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL 49 (67)
Q Consensus 6 ~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v 49 (67)
++....-+=|.++|+|++..++|+|...+..|.+.|+++.++.-
T Consensus 37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlW 80 (146)
T 1gvj_A 37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRW 80 (146)
T ss_dssp CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHH
T ss_pred CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHH
Confidence 44556677788899999999999999999999999999888743
No 11
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.71 E-value=0.0016 Score=39.26 Aligned_cols=46 Identities=13% Similarity=0.375 Sum_probs=36.0
Q ss_pred CCCCcchHHHHHHHhhcCCCCCCceEEcC-CCCeEEEechhhHHHhh
Q psy3995 4 VGTNVAAFLGKLWRMVEDPETNDLISWSE-NGQSFLIRNQSKFAKEL 49 (67)
Q Consensus 4 ~~~~~~~F~~kL~~~l~~~~~~~~I~W~~-~G~~f~I~d~~~f~~~v 49 (67)
+.......-+=|.++|+|+++.++|+|.. ++.-|.+.|+++.++.-
T Consensus 4 ~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlW 50 (118)
T 2dao_A 4 GSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLW 50 (118)
T ss_dssp CCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHH
T ss_pred ccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHH
Confidence 34445556677889999999999999987 45689999998877643
No 12
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=96.64 E-value=0.0015 Score=41.61 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=36.6
Q ss_pred CCcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhh
Q psy3995 6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL 49 (67)
Q Consensus 6 ~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~v 49 (67)
++....-+=|.++|+|+...++|+|...+..|.+.|+++.++.-
T Consensus 62 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlW 105 (171)
T 2nny_A 62 SGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRW 105 (171)
T ss_dssp CSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHH
T ss_pred CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHH
Confidence 34455667788899999999999999999999999999888753
No 13
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=96.59 E-value=0.0015 Score=38.22 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=34.5
Q ss_pred CCCCCcchHHHHHHHhhcCCC-CCCceEEcC-CCCeEEEechhhHHHh
Q psy3995 3 EVGTNVAAFLGKLWRMVEDPE-TNDLISWSE-NGQSFLIRNQSKFAKE 48 (67)
Q Consensus 3 ~~~~~~~~F~~kL~~~l~~~~-~~~~I~W~~-~G~~f~I~d~~~f~~~ 48 (67)
.++++....-+=|.++|+||+ +.++|+|.+ ++.-|.+.|+++.++.
T Consensus 5 ~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArl 52 (97)
T 1yo5_C 5 ALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARL 52 (97)
T ss_dssp ----CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHH
T ss_pred CCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHH
Confidence 456667777888899999985 579999985 5678999999888775
No 14
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=95.91 E-value=0.0025 Score=40.05 Aligned_cols=42 Identities=17% Similarity=0.398 Sum_probs=34.2
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHHhhc
Q psy3995 9 AAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELL 50 (67)
Q Consensus 9 ~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~~vL 50 (67)
...-+=|.++|.|++..++|+|...+.-|.+.|+++.++.--
T Consensus 6 i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG 47 (157)
T 1hbx_G 6 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWG 47 (157)
T ss_dssp CCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHH
T ss_pred ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHH
Confidence 344566788999999999999988888999999988877533
No 15
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=95.88 E-value=0.0078 Score=35.42 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=29.7
Q ss_pred hHHHHHHHhhcCCC-CCCceEEcCC-CCeEEEechhhHHHh
Q psy3995 10 AFLGKLWRMVEDPE-TNDLISWSEN-GQSFLIRNQSKFAKE 48 (67)
Q Consensus 10 ~F~~kL~~~l~~~~-~~~~I~W~~~-G~~f~I~d~~~f~~~ 48 (67)
...+=|.++|.|++ .+++|+|... ...|.+.|++..++.
T Consensus 6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArl 46 (103)
T 3jtg_A 6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQL 46 (103)
T ss_dssp SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHH
T ss_pred cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHH
Confidence 44555778889987 5689999985 457888898877764
No 16
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=95.53 E-value=0.011 Score=34.03 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCCCCceEEcCCC-CeEEEe--chhhHHHh
Q psy3995 13 GKLWRMVEDPETNDLISWSENG-QSFLIR--NQSKFAKE 48 (67)
Q Consensus 13 ~kL~~~l~~~~~~~~I~W~~~G-~~f~I~--d~~~f~~~ 48 (67)
+=|.++|+|+++.++|+|...+ ..|-+. |+++.++.
T Consensus 6 qFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArl 44 (89)
T 1pue_E 6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHR 44 (89)
T ss_dssp HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHH
T ss_pred HHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHH
Confidence 4577889999999999998754 456554 67777664
No 17
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=93.66 E-value=0.0058 Score=37.29 Aligned_cols=36 Identities=17% Similarity=0.486 Sum_probs=28.7
Q ss_pred HHHHHhhcCCCCCCceEEcCCC-CeEEEechhhHHHh
Q psy3995 13 GKLWRMVEDPETNDLISWSENG-QSFLIRNQSKFAKE 48 (67)
Q Consensus 13 ~kL~~~l~~~~~~~~I~W~~~G-~~f~I~d~~~f~~~ 48 (67)
+=|.++|+|+++.++|+|...+ .-|.+.|+++.++.
T Consensus 9 qFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArl 45 (128)
T 2lf8_A 9 DYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARL 45 (128)
Confidence 4467788999999999998854 47888899877664
No 18
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=74.64 E-value=1.4 Score=25.62 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCceEEcCCCCeEEEechhhHHHhhccc
Q psy3995 25 NDLISWSENGQSFLIRNQSKFAKELLPR 52 (67)
Q Consensus 25 ~~~I~W~~~G~~f~I~d~~~f~~~vLp~ 52 (67)
.=.|+|-+|..+|++.....-++++|..
T Consensus 31 gv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 31 NIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred CEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 3579999999999998877778888774
No 19
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=73.61 E-value=1 Score=26.21 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.2
Q ss_pred CCceEEcCCCCeEEEechhhHHHhhccc
Q psy3995 25 NDLISWSENGQSFLIRNQSKFAKELLPR 52 (67)
Q Consensus 25 ~~~I~W~~~G~~f~I~d~~~f~~~vLp~ 52 (67)
.=.|+|-+|..++++.....-++++|..
T Consensus 41 gv~I~WidDTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 41 NIQISWIDDTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SCCCEEEETTEEEEECSCHHHHHHHHHH
T ss_pred CEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 4689999999999999888888888874
No 20
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=64.98 E-value=6.9 Score=25.01 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=31.9
Q ss_pred HHHHhhcCCCCCCceEEcCCCCeEEE-echhhHHHhh-cccccCCCCcccce
Q psy3995 14 KLWRMVEDPETNDLISWSENGQSFLI-RNQSKFAKEL-LPRYYKHNNMASFI 63 (67)
Q Consensus 14 kL~~~l~~~~~~~~I~W~~~G~~f~I-~d~~~f~~~v-Lp~~F~~~~~~SF~ 63 (67)
.+|.++=... .+...|++++..++| .|...+..-| +|+-.+.-+|..|+
T Consensus 90 ~~Wk~lFgk~-ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~ 140 (200)
T 1sz7_A 90 VAFKMYLGIT-PSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 140 (200)
T ss_dssp THHHHHHSCC-CEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHH
T ss_pred HHHHHHhCCC-CccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhH
Confidence 3555554443 478999999999999 6765544433 56544556777664
No 21
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=63.07 E-value=2.7 Score=26.68 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=35.1
Q ss_pred hHH-HHHHHhhcCCCCCCceEEcCCCCeEEE-echhhHHHhh-ccccc-CCCCcccce
Q psy3995 10 AFL-GKLWRMVEDPETNDLISWSENGQSFLI-RNQSKFAKEL-LPRYY-KHNNMASFI 63 (67)
Q Consensus 10 ~F~-~kL~~~l~~~~~~~~I~W~~~G~~f~I-~d~~~f~~~v-Lp~~F-~~~~~~SF~ 63 (67)
.|+ ..+|.++=... .+...|++++..++| .|...+..-| +|+-. ..-+|..|.
T Consensus 88 ~fI~k~~Wk~lfgk~-~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~ 144 (193)
T 3cue_D 88 EVLSKCAFKIFLNIT-PNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNIL 144 (193)
T ss_dssp HHHHHHHHHHHSSCC-CCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHH
T ss_pred HHHHHHHHHHHhCCC-CccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhH
Confidence 466 34777776654 478899999999999 6766554443 56544 445666664
No 22
>1pp7_U 39 kDa initiator binding protein; core promoter, transcription initation, IBP39, T. vaginalis, transcription/DNA complex; 2.45A {Trichomonas vaginalis} SCOP: a.4.5.44 PDB: 1pp8_U
Probab=52.78 E-value=12 Score=22.49 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCcchHHHHHHHhhcCCCCC------CceEEcCCCCeEEEechhhHHHhhcc
Q psy3995 5 GTNVAAFLGKLWRMVEDPETN------DLISWSENGQSFLIRNQSKFAKELLP 51 (67)
Q Consensus 5 ~~~~~~F~~kL~~~l~~~~~~------~~I~W~~~G~~f~I~d~~~f~~~vLp 51 (67)
+.+-+.|+.||+-+|.=-+++ --.+|..|. -|-+ ++...++ ||.
T Consensus 28 r~~~srFp~KL~~LL~~v~~dp~r~n~~G~~WisD~-eF~m-~Kkr~~e-vm~ 77 (131)
T 1pp7_U 28 RDPNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDT-EFKM-KKKNVAL-VMG 77 (131)
T ss_dssp SSGGGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSS-CEEE-CHHHHHH-HHT
T ss_pred CCcccchhHHHHHHHHHhccChhHHHhcCCcccccc-hhee-chHHHHH-HHh
Confidence 445567999999998432221 247898886 5666 7777777 554
No 23
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa}
Probab=31.63 E-value=29 Score=22.53 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=24.1
Q ss_pred CcchHHHHHHHhhcCCCCCCceEEcCCCCeEEEec
Q psy3995 7 NVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRN 41 (67)
Q Consensus 7 ~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d 41 (67)
....++..|++.+.+|++.-..+|.+ |+ ++|+|
T Consensus 223 es~~ll~~L~~~~~~p~~~~~~~w~~-GD-lviwD 255 (293)
T 3eat_X 223 QRGELLASLRRCLYHPQAHYAHRWRS-DD-LVIAD 255 (293)
T ss_dssp THHHHHHHHHHHHTSTTTEEEECCCT-TC-EEEEE
T ss_pred HHHHHHHHHHHHHhCcccEEEEEcCC-CC-EEEEe
Confidence 34578999999999998766677865 44 45555
No 24
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=29.93 E-value=49 Score=19.95 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCCC-CCCcchHHHHHHHhhcCCCCCCceEEcCCCCe-EEE
Q psy3995 1 MAEV-GTNVAAFLGKLWRMVEDPETNDLISWSENGQS-FLI 39 (67)
Q Consensus 1 m~~~-~~~~~~F~~kL~~~l~~~~~~~~I~W~~~G~~-f~I 39 (67)
||++ +.+.+.|..=|.+.|+...+ +-+.|.+..+. |.|
T Consensus 4 ~~~~~~~~r~rlrpWL~~qidSg~y-pGL~W~d~~kt~FrI 43 (137)
T 3qu3_A 4 MAEVRGVQRVLFGDWLLGEVSSGQY-EGLQWLNEARTVFRV 43 (137)
T ss_dssp --------CCCHHHHHHHHHHHTCS-TTCEESSTTCCEEEE
T ss_pred ccCCCCCCcccHHHHHHHHhccCCc-CCceEecCCCCEEEe
Confidence 5555 34456788899999999998 56778777765 444
No 25
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=29.11 E-value=59 Score=18.46 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=18.7
Q ss_pred CceEEcC-CCCeEEEechhhHHHhh
Q psy3995 26 DLISWSE-NGQSFLIRNQSKFAKEL 49 (67)
Q Consensus 26 ~~I~W~~-~G~~f~I~d~~~f~~~v 49 (67)
=.|.|.+ ||+-+.|.+.+++..-+
T Consensus 63 f~l~Y~DedGDlItiSsDeEL~~Al 87 (102)
T 2kkc_A 63 FQAHYRAERGDLVAFSSDEELTMAM 87 (102)
T ss_dssp EEEEEECTTCCEEEECSHHHHHHHH
T ss_pred EEEEEECCCCCEEEecCHHHHHHHH
Confidence 3688955 89999999888887643
No 26
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=28.71 E-value=32 Score=21.28 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=12.9
Q ss_pred CceEEcCCCCeEEEec
Q psy3995 26 DLISWSENGQSFLIRN 41 (67)
Q Consensus 26 ~~I~W~~~G~~f~I~d 41 (67)
..+.|+|||+.++...
T Consensus 107 ~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 107 RSLEWNEDSRKLLIVG 122 (347)
T ss_dssp EEEEECTTSSEEEEEE
T ss_pred cceeECCCCCEEEEEE
Confidence 4678999999887753
No 27
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*
Probab=25.50 E-value=45 Score=20.99 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=23.2
Q ss_pred hHHHHHHHhhcCCCCCCceEEcCCCCeEEEec
Q psy3995 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRN 41 (67)
Q Consensus 10 ~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d 41 (67)
.++..|.+++.++++.-.++|. .|+.+++.|
T Consensus 216 ~~l~~l~~~~~~~~~~~~~~w~-~GD~~i~DN 246 (273)
T 1nx8_A 216 AFFQELGAFLKQPRYYYKHFWE-DGDLLIMDN 246 (273)
T ss_dssp HHHHHHHHHHTSTTTEEEECCC-TTCEEEEET
T ss_pred HHHHHHHHHhcCCceEEEeEec-CCCEEEEEC
Confidence 5889999999988877778885 466555544
No 28
>3ho6_A Toxin A; inositol phosphate, enterotoxin; HET: IHP; 1.60A {Clostridium difficile}
Probab=25.26 E-value=31 Score=23.13 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=27.0
Q ss_pred hHHHHHHHhhcCCCCCCceEEcCCCCeEEEech
Q psy3995 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQ 42 (67)
Q Consensus 10 ~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~ 42 (67)
.++.|.-.+++|-.+.-+++|++.|..++...+
T Consensus 220 ~W~~K~~a~i~~~~~K~vl~wn~~~n~l~~~~~ 252 (267)
T 3ho6_A 220 KWINKEEAIMSDLSSKEYIFFDSIDNKLKAKSK 252 (267)
T ss_dssp CEECHHHHHHTTCCCCEEEEEETTTTEEEEEES
T ss_pred ceeeccccccccCCceEEEEecCcCCEEEEecc
Confidence 456777778888888899999999999887653
No 29
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=25.04 E-value=57 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.2
Q ss_pred CceEEcCCCCeEEEec
Q psy3995 26 DLISWSENGQSFLIRN 41 (67)
Q Consensus 26 ~~I~W~~~G~~f~I~d 41 (67)
..+.|+|||+.++...
T Consensus 184 ~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 184 KGTFWSPKGSCLAFYR 199 (706)
T ss_dssp CSEEECTTSSEEEEEE
T ss_pred ceEEECCCCCEEEEEE
Confidence 5788999999887753
No 30
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*
Probab=24.28 E-value=31 Score=22.29 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=23.1
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCCCCeEEEech
Q psy3995 9 AAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQ 42 (67)
Q Consensus 9 ~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~ 42 (67)
..++..|++.+.+|++.-..+|.++ .++|+|-
T Consensus 217 ~~ll~~L~~~~~~pe~~~r~~W~~G--DlviwDN 248 (277)
T 3pvj_A 217 DALLRLLFAHATRPEFSIRWRWQEN--DVAFWDN 248 (277)
T ss_dssp HHHHHHHHHHHTSGGGEEEECCCTT--CEEEEET
T ss_pred HHHHHHHHHHHhCCCcEEEEeeCCC--CEEEEeC
Confidence 4689999999999886556667553 4566664
No 31
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=23.82 E-value=55 Score=17.11 Aligned_cols=31 Identities=39% Similarity=0.576 Sum_probs=21.0
Q ss_pred HHHHHhhcCC-CCCCceEEcCCCCeEEEechhhHHH
Q psy3995 13 GKLWRMVEDP-ETNDLISWSENGQSFLIRNQSKFAK 47 (67)
Q Consensus 13 ~kL~~~l~~~-~~~~~I~W~~~G~~f~I~d~~~f~~ 47 (67)
.++|+|+.+. .....+ ..|+.+.| +.++|.+
T Consensus 31 ~~l~~L~~~~~~~~~~~---~iG~~~lI-~r~~fe~ 62 (70)
T 1y6u_A 31 NKLRRLAEENKNANWLI---MNGNRIQI-KRKQFEK 62 (70)
T ss_dssp HHHHHHHHHCTTCSSEE---EETTEEEE-ESHHHHH
T ss_pred HHHHHHHHcCCCCCcEE---EeCCEEEE-EHHHHHH
Confidence 5789999774 333344 45888888 5677776
No 32
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=23.17 E-value=86 Score=18.31 Aligned_cols=39 Identities=5% Similarity=0.123 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCC-CCCceEEcC-CCCeEEEechhhHHHhh
Q psy3995 11 FLGKLWRMVEDPE-TNDLISWSE-NGQSFLIRNQSKFAKEL 49 (67)
Q Consensus 11 F~~kL~~~l~~~~-~~~~I~W~~-~G~~f~I~d~~~f~~~v 49 (67)
+..++-++...-. ..=.|.|.+ +|+-+.|.+.+++..-+
T Consensus 62 L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeEL~~Al 102 (117)
T 2ktr_A 62 LLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAM 102 (117)
T ss_dssp HHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHH
T ss_pred HHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHH
Confidence 4444444443222 123688955 89999999888887643
No 33
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A
Probab=23.02 E-value=34 Score=22.49 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=23.1
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCCCCeEEEech
Q psy3995 9 AAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQ 42 (67)
Q Consensus 9 ~~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~ 42 (67)
..++..|++.+.+|++.-..+|.++ .++|+|-
T Consensus 221 ~~lL~~L~~~~~~pe~~~r~~W~~G--DlviwDN 252 (301)
T 3r1j_A 221 SVLLELLQRRITMPENTVRWSWAPG--DVAMWDN 252 (301)
T ss_dssp HHHHHHHHHHHTCGGGEEEECCCTT--CEEEEET
T ss_pred HHHHHHHHHHhcCCCeEEEeeeCCC--CEEEEEc
Confidence 4689999999999986555677543 4566664
No 34
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=23.00 E-value=45 Score=21.55 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.1
Q ss_pred ceEEcCCCCeEEEec
Q psy3995 27 LISWSENGQSFLIRN 41 (67)
Q Consensus 27 ~I~W~~~G~~f~I~d 41 (67)
.++|+|||+.+.+..
T Consensus 364 svafspdG~~LA~as 378 (393)
T 4gq1_A 364 DFCWHQDGSHLAIAT 378 (393)
T ss_dssp EEEECTTSSEEEEEE
T ss_pred EEEEcCCCCEEEEEe
Confidence 478999999887754
No 35
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=22.86 E-value=76 Score=17.33 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCCCCCceEEcCCCCeEEEechhhHHH
Q psy3995 12 LGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAK 47 (67)
Q Consensus 12 ~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~~f~~ 47 (67)
+..+...|...+ -+|.|++.-.++-|..++.|..
T Consensus 40 v~qv~~qL~~Ge--avIvfse~~Esv~I~~k~~~~~ 73 (78)
T 1y0n_A 40 VERARHALRRGE--AVILFDPESQQCQLMLRSEVPA 73 (78)
T ss_dssp HHHHHHHHHTTS--EEEEECTTTCCEEEEEGGGSCG
T ss_pred HHHHHHHHHcCC--EEEEECCCCCeEeeeEHHHhCc
Confidence 345566666554 6899999999999988877764
No 36
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=22.72 E-value=44 Score=23.26 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=12.5
Q ss_pred CceEEcCCCCeEEEe
Q psy3995 26 DLISWSENGQSFLIR 40 (67)
Q Consensus 26 ~~I~W~~~G~~f~I~ 40 (67)
..++|+|||+.+...
T Consensus 172 ~~~~wSPDG~~la~~ 186 (719)
T 1z68_A 172 YALWWSPNGKFLAYA 186 (719)
T ss_dssp CCEEECTTSSEEEEE
T ss_pred ccEEECCCCCEEEEE
Confidence 368999999988764
No 37
>3rmh_A Yeast CDC13 OB4; OB fold, dimer, dimeric complex, protein binding; 1.90A {Candida glabrata}
Probab=22.56 E-value=24 Score=20.95 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=9.8
Q ss_pred CCCCceEEcCCCCe
Q psy3995 23 ETNDLISWSENGQS 36 (67)
Q Consensus 23 ~~~~~I~W~~~G~~ 36 (67)
+.+.+|+|+|-...
T Consensus 110 ktdriirwspiect 123 (149)
T 3rmh_A 110 KTDRIIRWSPIECT 123 (149)
T ss_dssp --CCBCEEEESSCC
T ss_pred ccCceEEeccceeE
Confidence 46789999997654
No 38
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.08 E-value=34 Score=17.50 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=7.7
Q ss_pred hccc--ccCCCC
Q psy3995 49 LLPR--YYKHNN 58 (67)
Q Consensus 49 vLp~--~F~~~~ 58 (67)
|||+ ||++.-
T Consensus 17 vLPKRQYFK~~~ 28 (53)
T 2l9b_B 17 VIPKRQYFNTNL 28 (53)
T ss_dssp HSBCGGGGCSSC
T ss_pred HcchHhhhcccc
Confidence 8885 898863
No 39
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=21.84 E-value=47 Score=23.44 Aligned_cols=15 Identities=13% Similarity=0.724 Sum_probs=12.3
Q ss_pred CceEEcCCCCeEEEe
Q psy3995 26 DLISWSENGQSFLIR 40 (67)
Q Consensus 26 ~~I~W~~~G~~f~I~ 40 (67)
..+.|++||+.|...
T Consensus 174 ~~~~wspDg~~l~~~ 188 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYN 188 (710)
T ss_dssp CCEEECTTSSEEEEE
T ss_pred ceEEEEeCCCEEEEE
Confidence 458899999988764
No 40
>1jya_A YOPE regulator; specific chaperone, type III secretion; 1.74A {Yersinia pseudotuberculosis} SCOP: d.198.1.1 PDB: 1k6z_A 1n5b_A 1l2w_A
Probab=21.53 E-value=71 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.5
Q ss_pred CCCCceEEcCCCCeEEEechhh
Q psy3995 23 ETNDLISWSENGQSFLIRNQSK 44 (67)
Q Consensus 23 ~~~~~I~W~~~G~~f~I~d~~~ 44 (67)
...++..|++++..+|++++..
T Consensus 73 ~~kPVl~~d~~~~~~iLWnRq~ 94 (130)
T 1jya_A 73 ILKPILSWDEVGGHPVLWNRQP 94 (130)
T ss_dssp TTCCEEEEETTTTEEEEEEEEE
T ss_pred cCCcccccCCCCCCeeEEecCc
Confidence 3568999999999999998653
No 41
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=21.28 E-value=44 Score=23.77 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=11.3
Q ss_pred ceEEcCCCCeEEEe
Q psy3995 27 LISWSENGQSFLIR 40 (67)
Q Consensus 27 ~I~W~~~G~~f~I~ 40 (67)
.++|+|||+.+...
T Consensus 175 ~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 175 ALWWSPNGTFLAYA 188 (740)
T ss_dssp CEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEE
Confidence 47899999987654
No 42
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=20.38 E-value=56 Score=22.04 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=15.8
Q ss_pred CCCceEEcCCCCeEEEechh
Q psy3995 24 TNDLISWSENGQSFLIRNQS 43 (67)
Q Consensus 24 ~~~~I~W~~~G~~f~I~d~~ 43 (67)
..+-|.|++||+.+.+.|..
T Consensus 222 ~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGG
T ss_pred ccCcceECCCCCEEEEEeCC
Confidence 44569999999999887753
No 43
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=20.36 E-value=1.1e+02 Score=21.24 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=27.5
Q ss_pred hHHHHHHHhhcCCCCCCceEEcCCCCeEEEechh
Q psy3995 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQS 43 (67)
Q Consensus 10 ~F~~kL~~~l~~~~~~~~I~W~~~G~~f~I~d~~ 43 (67)
.-+..|.+++.....+=.|.+++||+.+.|.|..
T Consensus 225 e~l~~l~~~v~~~~aDlgia~DgDaDR~~vvd~~ 258 (481)
T 4hjh_A 225 EDIALLAQWGKSDRLDAIVSTDGDADRPLIADEH 258 (481)
T ss_dssp HHHHHHHHHHTSTTCSEEEEECTTSSSEEEECTT
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCceEEEcCC
Confidence 4577888888877777789999999999888753
No 44
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=20.20 E-value=54 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=12.9
Q ss_pred CceEEcCCCCeEEEec
Q psy3995 26 DLISWSENGQSFLIRN 41 (67)
Q Consensus 26 ~~I~W~~~G~~f~I~d 41 (67)
..+.|+|||+.+....
T Consensus 176 ~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAA 191 (723)
T ss_dssp EEEEECTTSSEEEEEE
T ss_pred ceEEECCCCCEEEEEE
Confidence 3589999999887753
Done!