RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3995
(67 letters)
>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding.
Length = 96
Score = 103 bits (259), Expect = 4e-31
Identities = 33/58 (56%), Positives = 48/58 (82%)
Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
FL KL+ ++EDP +D+ISWSE+G SF+I + +FAK++LP+Y+KHNN +SF+RQLN
Sbjct: 1 PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLN 58
>gnl|CDD|214654 smart00415, HSF, heat shock factor.
Length = 105
Score = 102 bits (257), Expect = 9e-31
Identities = 35/61 (57%), Positives = 47/61 (77%)
Query: 7 NVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQL 66
FL KL+ +VEDP T+ +ISWS +G+SF+I + +FAK LLPRY+KHNN +SF+RQL
Sbjct: 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60
Query: 67 N 67
N
Sbjct: 61 N 61
>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription].
Length = 282
Score = 84.8 bits (210), Expect = 5e-22
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 8 VAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
F+ KL++++E+PE LI WS +G+SF+I + +F K +LPRY+KH N ASF+RQLN
Sbjct: 10 PKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLN 69
>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha;
Provisional.
Length = 753
Score = 28.9 bits (65), Expect = 0.12
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKE 48
TN A +L K + ED + + E Q +LI+ +K AKE
Sbjct: 512 TNYAHYLAKNFASYEDANADLVHELFERLQYYLIKASNKLAKE 554
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 27.0 bits (60), Expect = 0.65
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 17 RMVEDPETNDLISWSENGQSF----LIRNQSKFAK--------ELLPRYYKHNNMASFIR 64
+ ++P I WSE + F L ++ ++ + + K NMA F+
Sbjct: 227 ELKDEPGNG--IKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQMKKKVNMAKFVA 284
Query: 65 QL 66
Q+
Sbjct: 285 QV 286
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain
(NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). HscA's partner
J-domain protein is HscB; it does not appear to require
a NEF, and has been shown to be induced by cold-shock.
The HscA-HscB chaperone/co-chaperone pair is involved
in [Fe-S] cluster assembly.
Length = 355
Score = 26.4 bits (59), Expect = 1.1
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 24 TNDLISWSENGQSFLIRNQSKFAKELLPR--YYKHN 57
TN L++ +G+ ++ +++ + LLP +Y
Sbjct: 10 TNSLVASVLSGKVKILPDENG--RVLLPSVVHYGDG 43
>gnl|CDD|238270 cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It
catalyzes the reversible decarboxylation and
phosphorylation of oxaloacetate to yield
phosphoenolpyruvate and carbon dioxide, using a
nucleotide molecule (ATP) for the phosphoryl transfer,
and has a strict requirement for divalent metal ions
for activity. PEPCK's separate into two phylogenetic
groups based on their nucleotide substrate specificity,
this model describes the ATP-dependent groups.
Length = 508
Score = 26.0 bits (58), Expect = 1.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 17 RMVEDPETNDLISWSENGQSF 37
+V++P + D I W + Q
Sbjct: 46 FIVDEPSSEDDIWWGKVNQPI 66
>gnl|CDD|177642 PHA03414, PHA03414, virion protein; Provisional.
Length = 1337
Score = 25.5 bits (55), Expect = 2.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 15 LWRMVEDPETNDLISWSENGQSFLIRNQSKF 45
L R+++DP D S ++N S+L R +++F
Sbjct: 621 LSRLIDDPVRRDGFSTNDNAASYLRRYRNEF 651
>gnl|CDD|220619 pfam10182, Flo11, Flo11 domain. This presumed domain is found at
the N-terminus of the S. cerevisiae Flo11 protein.
Flo11 is required for diploid pseudohyphal formation
and haploid invasive growth. It belongs to a family of
proteins involved in invasive growth, cell-cell
adhesion, and mating, many of which can substitute for
each other under abnormal conditions.
Length = 152
Score = 24.7 bits (54), Expect = 3.5
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 4 VGTNVAAFLGKLWRM-VEDPETND--LISWSENGQSFLIRNQSKFAKELLPRYYKHNNM 59
T V+ L L + + + D ++ + N + LI N + F L KH +
Sbjct: 41 FQTQVSIPLKSLKSLKIIGLGSPDSTVVLYGYNENTNLIDNPTDFTATFLVYASKHGGL 99
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 24.7 bits (55), Expect = 3.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 11 FLGKLWRMVEDPETND 26
FL ++WR+V D +
Sbjct: 620 FLQRVWRLVVDAKGEA 635
>gnl|CDD|213700 TIGR02310, HpaB-2, 4-hydroxyphenylacetate 3-monooxygenase,
oxygenase component. This gene for this monooxygenase
is found within apparent operons for the degradation of
4-hydroxyphenylacetic acid in Shigella, Photorhabdus
and Pasteurella. The family modelled by This model is
narrowly limited to gammaproteobacteria to exclude
other aromatic hydroxylases involved in various
secondary metabolic pathways. Generally, this enzyme
acts with the assistance of a small flavin reductase
domain protein (HpaC) to provide the cycle the flavin
reductant for the reaction. This family of sequences is
a member of a larger subfamily of monooxygenases
(pfam03241).
Length = 519
Score = 24.5 bits (53), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 7 NVAAFLGKLWRMVEDPETNDLISW 30
N AA + KL+ + DP T D + W
Sbjct: 46 NAAASVAKLYDALHDPATKDELCW 69
>gnl|CDD|236471 PRK09344, PRK09344, phosphoenolpyruvate carboxykinase;
Provisional.
Length = 526
Score = 24.4 bits (54), Expect = 4.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 19 VEDPETNDLISWSENGQSF 37
V DP T D I W ++ +
Sbjct: 64 VRDPSTEDTIWWGDDNKPI 82
>gnl|CDD|176537 cd08595, PI-PLCc_zeta, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-zeta. This
family corresponds to the catalytic domain presenting in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PI-PLC-zeta represents a
class of sperm-specific PI-PLC that has an N-terminal
EF-hand domain, a PLC catalytic core domain, and a
C-terminal C2 domain. The PLC catalytic core domain is a
TIM barrel with two highly conserved regions (X and Y)
split by a highly degenerate linker sequence. There is
one PLC-zeta isozyme (1). PLC-zeta plays a fundamental
role in vertebrate fertilization by initiating
intracellular calcium oscillations that trigger the
embryo development. However, the mechanism of its
activation still remains unclear. Aside from PI-PLC-zeta
identified in mammals, its eukaryotic homologs have been
classified with this family.
Length = 257
Score = 24.1 bits (52), Expect = 6.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 7 NVAAFLGK--LWRMVEDPETNDLISWSENGQSFLIRNQSKFAKEL--LPRYYKHNNMASF 62
+ + LG+ L ++DP T +L S L++N+ K AK L L Y K SF
Sbjct: 110 YLVSILGEKLLRAPIDDPATGELPSPEALKFKILVKNKKKIAKALSDLVIYTKSEKFCSF 169
>gnl|CDD|176880 cd08871, START_STARD10-like, Lipid-binding START domain of
mammalian STARD10 and related proteins. This subfamily
includes the steroidogenic acute regulatory protein
(StAR)-related lipid transfer (START) domains of
mammalian STARD10 (also known as CGI-52, PTCP-like, and
SDCCAG28). The START domain family belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket. STARD10 binds phophatidylcholine and
phosphatidylethanolamine. This protein is widely
expressed and is synthesized constitutively in many
organs. It may function in the liver in the export of
phospholipids into bile. It is concentrated in the sperm
flagellum, and may play a role in energy metabolism. In
the mammary gland it may participate in the enrichment
of lipids in milk, and be a potential marker of
differentiation. Its expression is induced in this gland
during gestation and lactation. It is overexpressed in
mammary tumors from Neu/ErbB2 transgenic mice, in
several breast carcinoma cell lines, and in 35% of
primary human breast cancers, and may cooperate with
c-erbB receptor signaling in breast oncogenesis. It is a
potential marker of disease outcome in breast cancer;
loss of STARD10 expression in breast cancer strongly
predicts an aggressive disease course. The lipid
transfer activity of STRAD10 is downregulated by
phosphorylation of its Ser284 by CK2 (casein kinase 2).
Length = 222
Score = 24.1 bits (53), Expect = 6.9
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 29 SWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
SW E G ++I N S K+ PR F+R
Sbjct: 116 SWLEFGGEYIIFNHSVKHKKYPPRK-------GFVR 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.394
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,438,118
Number of extensions: 244992
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 15
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)