RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3995
(67 letters)
>1hks_A Heat-shock transcription factor; transcription regulation; NMR
{Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Length = 106
Score = 112 bits (282), Expect = 1e-34
Identities = 44/63 (69%), Positives = 55/63 (87%)
Query: 5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
G+ V AFL KLWR+V+D +TN LI W+++GQSF+I+NQ++FAKELLP YKHNNMASFIR
Sbjct: 1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60
Query: 65 QLN 67
QLN
Sbjct: 61 QLN 63
>2ldu_A Heat shock factor protein 1; structural genomics, northeast
structural genomics consortiu DNA-binding, PSI-biology,
protein structure initiative; NMR {Homo sapiens}
Length = 125
Score = 108 bits (271), Expect = 7e-33
Identities = 39/62 (62%), Positives = 51/62 (82%)
Query: 6 TNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQ 65
+NV AFL KLW +V DP+T+ LI WS +G SF + +Q +FAKE+LP+Y+KHNNMASF+RQ
Sbjct: 15 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQ 74
Query: 66 LN 67
LN
Sbjct: 75 LN 76
>3hts_B Heat shock transcription factor; transcription regulation,
DNA-binding protein, complex (WING helix_TURN_
helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22
PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A
1fbq_A
Length = 102
Score = 106 bits (266), Expect = 2e-32
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
AF+ KLW MV D I WS +G+S ++ N+ +F +E+LP+Y+KH+N ASF+R
Sbjct: 9 SMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVR 68
Query: 65 QLN 67
QLN
Sbjct: 69 QLN 71
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 28.3 bits (62), Expect = 0.11
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 14 KLWRMV----EDPETNDLISWSENGQSFLIRNQSKFAKEL 49
+LW+ + D + ISW+ +G F + + + A+
Sbjct: 66 QLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRW 105
>1awc_A Protein (GA binding protein alpha); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: a.4.5.21
Length = 110
Score = 28.2 bits (62), Expect = 0.12
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 14 KLW----RMVEDPETNDLISWSENGQSFLIRNQSKFAKEL 49
+LW ++ D + D ISW + F + A++
Sbjct: 2 QLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKW 41
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 28.1 bits (63), Expect = 0.13
Identities = 3/42 (7%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 27 LISWSENGQSFLIRNQSKFA--KELLPRYYKHNNMASFIRQL 66
++ ++G + + L+ +++ + L
Sbjct: 65 MVKLLDDGTFMIPGEKVAHTSLDALV-TFHQQKPIEPRRELL 105
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain;
1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A
1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Length = 146
Score = 27.5 bits (60), Expect = 0.21
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 14 KLWRMV----EDPETNDLISWSENGQSFLIRNQSKFAKEL 49
+LW+ + D ISW+ +G F + + + A+
Sbjct: 41 QLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRW 80
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 27.4 bits (60), Expect = 0.21
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 14 KLW----RMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPR 52
LW ++++ P+ +I W+ N F + + A+ R
Sbjct: 7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIR 49
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Length = 98
Score = 26.9 bits (59), Expect = 0.30
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 14 KLW----RMVEDPETNDLISWSENGQSFLIRNQSKFAKEL 49
+LW ++ D I+W F + + + A+
Sbjct: 7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRW 46
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged
helix-turn-helix, DNA-binding specificity,
transcription/DNA complex; HET: DNA; 1.93A {Homo
sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Length = 93
Score = 26.1 bits (57), Expect = 0.47
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 14 KLW----RMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPR 52
LW ++++ P+ +I W+ N F + + A+ R
Sbjct: 6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIR 48
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 26.0 bits (57), Expect = 0.85
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 44 KFAKELLPRYYKHNNMASFIRQL 66
A +LP ++ + SFI+ L
Sbjct: 102 NIANMVLPPEKIYSPLHSFIKML 124
>4avp_A ETS translocation variant 1; transcription, transcriptional
activation and repression, DN binding protein, E
twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens}
Length = 106
Score = 25.5 bits (55), Expect = 1.0
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 14 KLWRMV----EDPETNDLISWSENGQSFLIRNQSKFAKEL 49
+LW+ + +DP + I+W+ G F + + A+
Sbjct: 13 QLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRW 52
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, T thermophilus; 2.00A {Thermus
thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A*
2pc9_A*
Length = 529
Score = 25.0 bits (55), Expect = 1.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 17 RMVEDPETNDLISWSENGQSF 37
+V +PE I W E Q F
Sbjct: 58 FVVREPEVEGEIWWGEVNQPF 78
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase;
2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Length = 524
Score = 24.6 bits (54), Expect = 2.3
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 17 RMVEDPETNDLISWSENGQSF 37
R+V+ + + + W +
Sbjct: 48 RIVDTDDVRENVDWGKVNMKL 68
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 23.7 bits (52), Expect = 5.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 1 MAEVGTNVAAFLGKLWR 17
MA+ VA FL +L +
Sbjct: 269 MAKTSQTVATFLDELAQ 285
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex
(transcription regulating/DNA), oncogene, transforming
protein, DNA- binding, activator; HET: DNA; 2.10A {Mus
musculus} SCOP: a.4.5.21
Length = 89
Score = 23.5 bits (50), Expect = 5.8
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 14 KLW----RMVEDPETNDLISWSENGQ---SFLIRNQSKFAKELLPRYYKHNNMA 60
+L+ ++ + D I W + + F +++ A + M
Sbjct: 3 RLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMT 56
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 23.3 bits (51), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 1 MAEVGTNVAAFLGKLWR 17
A+ + VAAFL L +
Sbjct: 285 TAKSTSRVAAFLDDLSQ 301
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 23.3 bits (51), Expect = 7.6
Identities = 4/11 (36%), Positives = 9/11 (81%)
Query: 11 FLGKLWRMVED 21
FL ++W++V +
Sbjct: 689 FLKRVWKLVYE 699
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 23.1 bits (49), Expect = 9.5
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 31 SENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQL 66
+ G L+R + K+ Y K ++ + F Q+
Sbjct: 88 TSTGVQMLLRKLIEEHKQEFKVYQKASDKSGFTAQV 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.394
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,028,935
Number of extensions: 44887
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 19
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)