RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3995
(67 letters)
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila
melanogaster [TaxId: 7227]}
Length = 106
Score = 97.3 bits (242), Expect = 4e-29
Identities = 44/63 (69%), Positives = 55/63 (87%)
Query: 5 GTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIR 64
G+ V AFL KLWR+V+D +TN LI W+++GQSF+I+NQ++FAKELLP YKHNNMASFIR
Sbjct: 1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60
Query: 65 QLN 67
QLN
Sbjct: 61 QLN 63
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast
(Kluyveromyces lactis) [TaxId: 28985]}
Length = 92
Score = 91.1 bits (226), Expect = 8e-27
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASFIRQLN 67
AF+ KLW MV D I WS +G+S ++ N+ +F +E+LP+Y+KH+N ASF+RQLN
Sbjct: 4 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 61
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues
331-440 {Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 26.0 bits (57), Expect = 0.31
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 15 LW----RMVEDPETNDLISWSENGQSFLIRNQSKFAK 47
LW ++ D ISW+ +G F + + + A+
Sbjct: 42 LWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVAR 78
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 110
Score = 25.2 bits (55), Expect = 0.43
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 15 LW----RMVEDPETNDLISWSENGQSFLIRNQSKFAK 47
LW ++ D + D ISW + F + A+
Sbjct: 3 LWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQ 39
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 24.8 bits (54), Expect = 0.66
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 15 LW----RMVEDPETNDLISWSENGQSFLIRNQSKFAK 47
LW ++ D I+W F + + + A+
Sbjct: 8 LWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVAR 44
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 24.9 bits (54), Expect = 0.67
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 15 LW----RMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHN 57
LW ++++ P+ +I W+ N F + + A+ L K+
Sbjct: 6 LWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVAR--LWGIRKNK 50
>d1qk1a1 a.83.1.1 (A:1-102) Creatine kinase, N-domain {Human (Homo
sapiens), mitochondria [TaxId: 9606]}
Length = 102
Score = 24.4 bits (53), Expect = 1.0
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 40 RNQSKF-AKELLPRYYKHNN-MASF 62
+ + P KHNN MAS
Sbjct: 4 ERRRLYPPSAEYPDLRKHNNCMASH 28
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 23.8 bits (51), Expect = 2.2
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 4 VGTNVAAFLGKLWRMVEDPETNDLISWSENGQSFLIRNQSKFAKELLPRYYKHNNMASF 62
+ L +W+M+ T L S S G++ + +A + + K + + SF
Sbjct: 367 TDGSRTLTLALVWQMMRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSF 425
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 78
Score = 22.7 bits (49), Expect = 3.1
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 27 LISWSENGQSFLIRNQSKFAKELL 50
+I + Q + +S+ ELL
Sbjct: 53 VILFDPESQQCQLMLRSEVPAELL 76
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite
reductase subunit beta, DsrB {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 177
Score = 23.1 bits (49), Expect = 3.1
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 17 RMVEDPETNDLISWSENGQ 35
+++D +W ++ Q
Sbjct: 156 HLIDDFRDPAYYTWRQSTQ 174
>d1mdca_ b.60.1.2 (A:) Fatty acid-binding protein {Tobacco
hornworm (Manduca sexta) [TaxId: 7130]}
Length = 131
Score = 22.9 bits (49), Expect = 3.7
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 10/29 (34%)
Query: 10 AFLGKLWRMVEDPETNDLISWSENGQSFL 38
++LGK++ +V+ EN FL
Sbjct: 1 SYLGKVYSLVK----------QENFDGFL 19
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Length = 85
Score = 22.4 bits (48), Expect = 4.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 17 RMVEDPETNDLISWSENGQ 35
+ E P +DLI + E
Sbjct: 41 SVTEHPSGSDLIYYPEGNN 59
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli
[TaxId: 562]}
Length = 86
Score = 21.6 bits (46), Expect = 8.2
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 17 RMVEDPETNDLISWSENGQ 35
++ E P+ DLI + + +
Sbjct: 43 KITEHPDGTDLIYYPSDNR 61
>d1ftpa_ b.60.1.2 (A:) Fatty acid-binding protein {Desert locust
(Schistocerca gregaria) [TaxId: 7010]}
Length = 133
Score = 21.7 bits (46), Expect = 10.0
Identities = 4/31 (12%), Positives = 10/31 (32%), Gaps = 10/31 (32%)
Query: 8 VAAFLGKLWRMVEDPETNDLISWSENGQSFL 38
V F G +++ N + ++
Sbjct: 1 VKEFAGIKYKLDS----------QTNFEEYM 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.394
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 249,923
Number of extensions: 8697
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 17
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)