BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3997
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15645|PCH2_HUMAN Pachytene checkpoint protein 2 homolog OS=Homo sapiens GN=TRIP13
PE=1 SV=2
Length = 432
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 114/133 (85%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL S+Y+ + IEINSHSLF
Sbjct: 159 FSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLF 218
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV KMF KI++ ++ +++LV +LIDE+ESLT AR + +GTEPSD +RVVN
Sbjct: 219 SKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVN 278
Query: 123 AVLTQIDQLKKKS 135
AVLTQIDQ+K+ S
Sbjct: 279 AVLTQIDQIKRHS 291
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKI 146
EE + C +I + L RE M G ++ V+ + ++ + +KS GLSGR LRK+
Sbjct: 336 EELMKCQIIYPRQQLLTLRELEMIGFIENN----VSKLSLLLNDISRKSEGLSGRVLRKL 391
Query: 147 PFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSL 183
PFL Y+ +V++E FL AL V E K L
Sbjct: 392 PFLAHALYVQAPTVTIEGFLQALSLAVDKQFEERKKL 428
>sp|Q5XHZ9|PCH2_RAT Pachytene checkpoint protein 2 homolog OS=Rattus norvegicus
GN=Trip13 PE=2 SV=1
Length = 432
Score = 198 bits (503), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 113/133 (84%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL S+Y+ + IEINSHSLF
Sbjct: 159 FSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLF 218
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV KMF KI++ ++ +E+LV +LIDE+ESLT AR + +G EPSD +RVVN
Sbjct: 219 SKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTAARNACRAGAEPSDAIRVVN 278
Query: 123 AVLTQIDQLKKKS 135
AVLTQIDQ+K+ S
Sbjct: 279 AVLTQIDQIKRHS 291
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKI 146
EE + C +I + L RE M G + V ++ +L++I +KS GLSGR LRK+
Sbjct: 336 EELMKCQIIYPRQQLLTLRELEMIGF-IENNVSKLSLLLSEI---SRKSEGLSGRVLRKL 391
Query: 147 PFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSL 183
PFL YI SV++E FL AL V E+K L
Sbjct: 392 PFLAHALYIQAPSVTIEGFLQALSLAVDKQFEEKKKL 428
>sp|Q3UA06|PCH2_MOUSE Pachytene checkpoint protein 2 homolog OS=Mus musculus GN=Trip13
PE=2 SV=1
Length = 432
Score = 198 bits (503), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 113/133 (84%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL S+Y+ + IEINSHSLF
Sbjct: 159 FSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLF 218
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV KMF KI++ ++ +E+LV +LIDE+ESLT AR + +G EPSD +RVVN
Sbjct: 219 SKWFSESGKLVTKMFQKIQDLIDDKEALVFVLIDEVESLTAARNACRAGAEPSDAIRVVN 278
Query: 123 AVLTQIDQLKKKS 135
AVLTQIDQ+K+ S
Sbjct: 279 AVLTQIDQIKRHS 291
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKI 146
EE + C +I + L RE M G + V ++ +L++I +KS GLSGR LRK+
Sbjct: 336 EELMKCQIIYPRQQLLTLRELEMIGF-IENNVSKLSLLLSEI---SRKSEGLSGRVLRKL 391
Query: 147 PFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSL 183
PFL YI SV++E FL AL V E+K L
Sbjct: 392 PFLAHALYIQAPSVTIEGFLQALSLAVDKQFEEKKKL 428
>sp|E2R222|PCH2_CANFA Pachytene checkpoint protein 2 homolog OS=Canis familiaris
GN=TRIP13 PE=3 SV=1
Length = 432
Score = 197 bits (500), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 113/131 (86%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL S+Y+ + IEINSHSLF
Sbjct: 159 FSDKNVDSNLIAWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYQYGQLIEINSHSLF 218
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV KMF KI++ ++ +++LV +LIDE+ESLT AR + +GTEPSD +RVVN
Sbjct: 219 SKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVN 278
Query: 123 AVLTQIDQLKK 133
AVLTQIDQ+K+
Sbjct: 279 AVLTQIDQIKR 289
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKI 146
EE + C +I + L RE M G + V ++ +L++I +KS GLSGR LRK+
Sbjct: 336 EELMKCQIIYPRQQLLTLRELEMIGF-IENNVSKLSLLLSEI---SRKSEGLSGRVLRKL 391
Query: 147 PFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSL 183
PFL YI +V++E FL AL V E K L
Sbjct: 392 PFLAHALYIQAPTVTIEGFLQALSLAVDKQFEERKKL 428
>sp|Q6PH52|PCH2_DANRE Pachytene checkpoint protein 2 homolog OS=Danio rerio GN=trip13
PE=2 SV=1
Length = 424
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 89/131 (67%), Positives = 112/131 (85%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
FS V SN+I+WNRVVLLHGPPGTGKTSLCK +AQKLSIRL +Y ++F+EINSHSLF
Sbjct: 151 FSDKNVDSNLIAWNRVVLLHGPPGTGKTSLCKGLAQKLSIRLSDRYAHSQFVEINSHSLF 210
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV KMF KI+E ++ +++LV +LIDE+ESLT AR + +GTEPSD +RVVN
Sbjct: 211 SKWFSESGKLVTKMFQKIQELIDDKDALVFVLIDEVESLTAARSAAQAGTEPSDAIRVVN 270
Query: 123 AVLTQIDQLKK 133
+VLTQ+DQ+K+
Sbjct: 271 SVLTQLDQIKR 281
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 131 LKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSL 183
+ ++S GLSGR LRKIPFL Y ++++++ FL A+E V E+ SL
Sbjct: 368 ISQRSVGLSGRALRKIPFLAHALYGKTSTMTLKGFLTAMEHAVNKQRQEQASL 420
>sp|D3K5L7|PCH2_PIG Pachytene checkpoint protein 2 homolog OS=Sus scrofa GN=TRIP13 PE=2
SV=1
Length = 431
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 113/133 (84%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL S+Y+ + IEINSHSLF
Sbjct: 159 FSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLF 218
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV +MF I++ ++ +++LV +LIDE+ESLT AR + +GTEPSD +RVVN
Sbjct: 219 SKWFSESGKLVTRMFQMIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVN 278
Query: 123 AVLTQIDQLKKKS 135
AVLTQIDQ+K+ S
Sbjct: 279 AVLTQIDQIKRHS 291
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKI 146
EE + C +I + L RE M G + V ++ +L++I +KS GLSGR LRK+
Sbjct: 336 EELMKCQIIYPRQQLLTLRELEMIGF-IENNVSKLSLLLSEI---SRKSEGLSGRVLRKL 391
Query: 147 PFLTFVKYISNNSVSMENFLIALEKTV 173
PFL YI +V++E FL AL V
Sbjct: 392 PFLAHALYIQAPTVTIEGFLQALSLAV 418
>sp|E1C6Q1|PCH2_CHICK Pachytene checkpoint protein 2 homolog OS=Gallus gallus GN=TRIP13
PE=3 SV=1
Length = 432
Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 111/131 (84%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
FS V SN+ISWNRVVLLHGPPGTGKTSLCKA+AQKL+IRL +Y+ + IEINSHSLF
Sbjct: 159 FSDRNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSYRYRYGQLIEINSHSLF 218
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV KMF KI+E ++ +++LV +LIDE+ESLT AR + +GTEPSD +RVVN
Sbjct: 219 SKWFSESGKLVTKMFQKIQELIDDKDALVFVLIDEVESLTAARSAFKAGTEPSDAIRVVN 278
Query: 123 AVLTQIDQLKK 133
AVL QIDQ+K+
Sbjct: 279 AVLMQIDQIKR 289
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKI 146
EE + C +I + L RE M G + V ++ VL +I ++S GLSGR LRK+
Sbjct: 336 EELMKCQIIYPRQHLLSLRELEMIGF-VENNVSRLSLVLKEI---SRRSEGLSGRVLRKL 391
Query: 147 PFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEK 181
PFL YI + SV+M FL AL V+D EE+
Sbjct: 392 PFLAHALYIQSPSVTMTAFLQAL-SLVVDKQFEER 425
>sp|Q6P4W8|PCH2_XENTR Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis
GN=trip13 PE=2 SV=1
Length = 432
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 111/133 (83%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60
M FS V SN+ISWNRVVLLHGPPGTGKTSLCKA+AQKL+IRL +Y+ + +EINSHS
Sbjct: 157 MLFSDKNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSYRYRYGQLVEINSHS 216
Query: 61 LFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRV 120
LFSK+FSESGKLV KMF KI E + +E+LV +LIDE+ESLT AR++ +GTEPSD +RV
Sbjct: 217 LFSKWFSESGKLVTKMFQKIHELINDKEALVFVLIDEVESLTAARKASRAGTEPSDAIRV 276
Query: 121 VNAVLTQIDQLKK 133
VNAVLTQID +K+
Sbjct: 277 VNAVLTQIDHIKR 289
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 127 QIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSL 183
Q++++ +KS GLSGR LRK+PFL Y+ + +V++E FL AL V + E K+
Sbjct: 372 QLNEISRKSEGLSGRVLRKLPFLAHALYLQSPTVTIERFLWALSLAVDEQFQERKNF 428
>sp|Q7XK25|PCH2_ORYSJ Pachytene checkpoint protein 2 homolog OS=Oryza sativa subsp.
japonica GN=Os04g0479000 PE=3 SV=3
Length = 471
Score = 187 bits (474), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 110/130 (84%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
F+ V ++SWNR+VLLHGPPGTGKTSLCKA+AQKLSIR +S+Y + + IE+N+HSLF
Sbjct: 193 FTEKGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFKSRYSMCQLIEVNAHSLF 252
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV K+F KI+E VE E +LV +LIDE+ESL AR++ +SG+EPSD +RVVN
Sbjct: 253 SKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARQAAISGSEPSDSIRVVN 312
Query: 123 AVLTQIDQLK 132
A+LTQ+D+LK
Sbjct: 313 ALLTQMDKLK 322
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 137 GLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKS 182
GLSGRTLRK+PFL + + FL AL +T L E +
Sbjct: 426 GLSGRTLRKLPFLAHASVANPSCCDASAFLHALIQTAQRELSESRG 471
>sp|A2XUN8|PCH2_ORYSI Pachytene checkpoint protein 2 homolog OS=Oryza sativa subsp.
indica GN=OsI_16324 PE=3 SV=2
Length = 471
Score = 187 bits (474), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 110/130 (84%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
F+ V ++SWNR+VLLHGPPGTGKTSLCKA+AQKLSIR +S+Y + + IE+N+HSLF
Sbjct: 193 FTEKGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFKSRYSMCQLIEVNAHSLF 252
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV K+F KI+E VE E +LV +LIDE+ESL AR++ +SG+EPSD +RVVN
Sbjct: 253 SKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARQAAISGSEPSDSIRVVN 312
Query: 123 AVLTQIDQLK 132
A+LTQ+D+LK
Sbjct: 313 ALLTQMDKLK 322
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 137 GLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKS 182
GLSGRTLRK+PFL + + FL AL +T L E +
Sbjct: 426 GLSGRTLRKLPFLAHASVANPSCCDASAFLHALIQTAQRELSESRG 471
>sp|Q8H1F9|PCH2_ARATH Pachytene checkpoint protein 2 homolog OS=Arabidopsis thaliana
GN=At4g24710 PE=2 SV=1
Length = 467
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 109/130 (83%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
F+ V N++SWNR++LLHGPPGTGKTSLCKA+AQKLSIR S+Y + IE+N+HSLF
Sbjct: 189 FTQKGVNPNLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLF 248
Query: 63 SKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVN 122
SK+FSESGKLV K+F KI+E VE + +LV +LIDE+ESL AR++ +SG+EPSD +RVVN
Sbjct: 249 SKWFSESGKLVAKLFQKIQEMVEEDGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 308
Query: 123 AVLTQIDQLK 132
A+LTQ+D+LK
Sbjct: 309 ALLTQMDKLK 318
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 127 QIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTV 173
Q+ + K GLSGR+LRK+PFL S NFL + +T
Sbjct: 412 QLIEAAKGCEGLSGRSLRKLPFLAHAALADPYSHDPSNFLCTMIETA 458
>sp|Q09535|PCH2_CAEEL Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans
GN=pch-2 PE=3 SV=1
Length = 424
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 104/137 (75%)
Query: 2 KFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61
+ S V + II+ NR++LL GPPGTGKTSLCK +AQ LSIR+ KY + +EINSHSL
Sbjct: 158 RLSEKHVNTKIINVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSL 217
Query: 62 FSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVV 121
FSK+FSESGKLVQKMF++I E E E+ +V +LIDE+ESL RES S +EPSD +R V
Sbjct: 218 FSKWFSESGKLVQKMFDQIDELAEDEKCMVFVLIDEVESLGMCRESSSSRSEPSDAIRAV 277
Query: 122 NAVLTQIDQLKKKSTGL 138
NA+LTQID+++++ L
Sbjct: 278 NALLTQIDRIRRRDNVL 294
>sp|P38126|PCH2_YEAST Pachytene checkpoint protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PCH2 PE=1 SV=2
Length = 564
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 92/136 (67%), Gaps = 13/136 (9%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR---------LQSKYKITEFIEINSHS 60
+ +I+ N+++L+HGPPGTGKT+LCKA+ QKLS+R + + YK IE++
Sbjct: 301 TTLITNNKLLLVHGPPGTGKTTLCKALCQKLSVRREFSDGSDTIDTNYKGI-IIELSCAR 359
Query: 61 LFSKYFSESGKLVQKMFNKIKEAVEYEES---LVCLLIDEIESLTRARESVMSGTEPSDG 117
+FSK+F ES K + +F I+E ++ E +CLLIDE+E++ +R ++ S E +DG
Sbjct: 360 IFSKWFGESSKNISIVFKDIEELLKVNEGRGIFICLLIDEVEAIASSRTNLSSRNESTDG 419
Query: 118 VRVVNAVLTQIDQLKK 133
+RVVN +LTQ+D+LKK
Sbjct: 420 IRVVNTLLTQLDRLKK 435
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 115 SDGVRVVNA---VLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169
S GV+ N +L +I +K + +SGRT+RK+P + +Y V + F++AL
Sbjct: 496 STGVKFFNKYQDILRKI-AIKCSTVDISGRTIRKLPLMCLSEYFRTFPVDDDEFVLAL 552
>sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate
3D7) GN=PF07_0047 PE=3 SV=2
Length = 1229
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 17/123 (13%)
Query: 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLV 73
++N+ +LL+GPPG GKT L KA+A + FI + L + +F ES V
Sbjct: 966 NYNKGILLYGPPGCGKTLLAKAIANECK---------ANFISVKGPELLTMWFGESEANV 1016
Query: 74 QKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133
+ +F+K + A S + DEI+SL + R S + + SD RV+N +LT+ID + +
Sbjct: 1017 RDLFDKARAA-----SPCIIFFDEIDSLAKERNS-NTNNDASD--RVINQILTEIDGINE 1068
Query: 134 KST 136
K T
Sbjct: 1069 KKT 1071
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
IS + VL+HG PGTGKTS+ KA+A + + +I IN + SK+ ES +
Sbjct: 558 ISAPKGVLMHGIPGTGKTSIAKAIANESNAYC--------YI-INGPEIMSKHIGESEQK 608
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
++K+F K E++ + IDEI+S+ R + E RVV+ +LT +D LK
Sbjct: 609 LRKIFKKAS-----EKTPCIIFIDEIDSIANKRSKSNNELEK----RVVSQLLTLMDGLK 659
Query: 133 KKSTGL 138
K + L
Sbjct: 660 KNNNVL 665
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VLLHGPPGTGKT L KAVA + S F I + SKY+ ES + ++++F
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETS---------ASFFSIAGPEIISKYYGESEQQLREIFE 276
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
K ++S + IDE++S+ RE V E RVV +LT +D L+ +
Sbjct: 277 DAK-----DDSPSIIFIDELDSIAPKREDVTGEVE----RRVVAQLLTMMDGLEGRG 324
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 17/115 (14%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VLL+GPPGTGKT + KAVA + + FI + L SK+ ES K +++ F
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETN---------ANFISVRGPQLLSKWVGESEKAIRQTFR 549
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133
K ++ + + DE++SL R G S+ RVVN +LT++D L++
Sbjct: 550 KARQV-----APTVIFFDELDSLAPGR-GQTGGNNVSE--RVVNQLLTELDGLEE 596
>sp|Q5AWS6|CDC48_EMENI Cell division control protein 48 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=cdc48 PE=1 SV=2
Length = 823
Score = 65.1 bits (157), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 18/134 (13%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
+S +R VL +GPPGTGKT L KAVA + + FI + L S +F ES
Sbjct: 530 LSPSRGVLFYGPPGTGKTMLAKAVANECA---------ANFISVKGPELLSMWFGESESN 580
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRAR-ESVMSGTEPSDGVRVVNAVLTQIDQL 131
++ +F+K + A + +DE++S+ ++R SV SD RVVN +LT++D +
Sbjct: 581 IRDIFDKARAAAP-----CVVFLDELDSIAKSRGGSVGDAGGASD--RVVNQLLTEMDGM 633
Query: 132 -KKKSTGLSGRTLR 144
KK+ + G T R
Sbjct: 634 TSKKNVFVIGATNR 647
Score = 55.1 bits (131), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +L++GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 260 RGILMYGPPGTGKTLMARAVANETG---------AFFFLINGPEIMSKMAGESESNLRKA 310
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F + + + S + IDEI+S+ RE E RVV+ +LT +D +K +S
Sbjct: 311 FEEAE-----KNSPAIIFIDEIDSIAPKREKTNGEVER----RVVSQLLTLMDGMKARS 360
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 64.7 bits (156), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 16/133 (12%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
+S ++ VL +GPPGTGKT L KAVA ++S FI + L S ++ ES
Sbjct: 518 LSPSKGVLFYGPPGTGKTLLAKAVATEVS---------ANFISVKGPELLSMWYGESESN 568
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
++ +F+K + A + +DE++S+ +AR + G RVVN +LT++D +
Sbjct: 569 IRDIFDKARAAAP-----TVVFLDELDSIAKARGGSL-GDAGGASDRVVNQLLTEMDGMN 622
Query: 133 -KKSTGLSGRTLR 144
KK+ + G T R
Sbjct: 623 AKKNVFVIGATNR 635
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R VL++GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 249 RGVLMYGPPGTGKTLMARAVANETG---------AFFFLINGPEVMSKMAGESESNLRKA 299
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDEI+S+ R+ E RVV+ +LT +D +K +S
Sbjct: 300 F---EEAEKNAPAII--FIDEIDSIAPKRDKTNGEVER----RVVSQLLTLMDGMKARS 349
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 18/123 (14%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
I+ + V+L+GPPGTGKT + +AVA + F+ IN + SKY+ +S +
Sbjct: 221 ITPPKGVILYGPPGTGKTLIARAVANESG---------ANFLSINGPEIMSKYYGQSEQK 271
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
++++F+K +E + IDEI+S+ RE V E RVV +LT +D +K
Sbjct: 272 LREIFSKAEETAPS-----IIFIDEIDSIAPKREEVQGEVE----RRVVAQLLTLMDGMK 322
Query: 133 KKS 135
++
Sbjct: 323 ERG 325
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 21/115 (18%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79
LL+GPPG GKT L KAVA + + FI I + SK+ ES K ++++F K
Sbjct: 505 LLYGPPGVGKTLLAKAVATESN---------ANFISIKGPEVLSKWVGESEKAIREIFKK 555
Query: 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGV--RVVNAVLTQIDQLK 132
K+ + + +DEI+S+ R GT GV R+VN +LT +D ++
Sbjct: 556 AKQV-----APAIVFLDEIDSIAPRR-----GTTSDSGVTERIVNQLLTSLDGIE 600
>sp|C5CBU4|ARC_MICLC AAA ATPase forming ring-shaped complexes OS=Micrococcus luteus
(strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 /
NCIMB 9278 / NCTC 2665 / VKM Ac-2230) GN=arc PE=3 SV=1
Length = 584
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 1 MKFSHSKV-KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59
+ F H +V + + + + ++L+GPPGTGKT L KAVA LS R + + + F+ +
Sbjct: 266 IPFLHPEVYREHGLRAPKGIMLYGPPGTGKTMLAKAVANALSAR-SADGERSFFLNVKGP 324
Query: 60 SLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARES-VMSGTEPSDGV 118
L +KY E+ + ++ +F++ +E + +V + DE+ESL R R S V S E +
Sbjct: 325 ELLNKYVGETERQIRVIFDRAREKADAGFPVV-IFFDEMESLFRTRGSGVSSDVETT--- 380
Query: 119 RVVNAVLTQIDQLK 132
+V +LT+ID ++
Sbjct: 381 -IVPQLLTEIDGVE 393
>sp|Q6NH92|ARC_CORDI AAA ATPase forming ring-shaped complexes OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=arc PE=3 SV=1
Length = 509
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VLL+GPPG GKT + KAVA L+ R+ + + + FI + L +KY E+ + ++ +F
Sbjct: 229 VLLYGPPGCGKTLIAKAVANSLAQRIGAGNR-SYFINVKGPELLNKYVGETERRIRLIFE 287
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARES-VMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
+ +E E E V + DE+ES+ R R S V S E + VV +LT++D ++ S
Sbjct: 288 RARELAE-EGRPVIVFFDEMESIFRTRGSGVSSDMETT----VVPQLLTELDGVESLS 340
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VLL+GPPGTGKT + KAVA ++ FI I+ + SKY+ ES + ++++F
Sbjct: 219 VLLYGPPGTGKTLIAKAVANEVD---------AHFIPISGPEIMSKYYGESEQRLREIFE 269
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
+ K E + + IDEI+S+ RE V E RVV +L +D L+ +
Sbjct: 270 EAK-----ENAPSIIFIDEIDSIAPKREEVTGEVE----RRVVAQLLALMDGLEARG 317
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 21/123 (17%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
I R +LL GPPGTGKT L KAVA + + FI + L SK+ ES K
Sbjct: 486 IKPPRGILLFGPPGTGKTLLAKAVANESN---------ANFISVKGPELLSKWVGESEKH 536
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSG--TEPSDGVRVVNAVLTQIDQ 130
V++MF K ++ + + DEI+SL R + TE RVV+ +LT++D
Sbjct: 537 VREMFRKARQV-----APCVIFFDEIDSLAPRRGGIGDSHVTE-----RVVSQLLTELDG 586
Query: 131 LKK 133
L++
Sbjct: 587 LEE 589
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 63.9 bits (154), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 18/116 (15%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL+GPPGTGKT L +A+A ++ FI +N + SK++ ES + ++++F
Sbjct: 249 ILLYGPPGTGKTLLARALANEIG---------AYFITVNGPEIMSKFYGESEQRIREIF- 298
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK 134
KEA E S++ IDEI+++ RE V E RVV +LT +D +K +
Sbjct: 299 --KEAEENAPSII--FIDEIDAIAPKREDVTGEVEK----RVVAQLLTLMDGIKGR 346
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL GPPGTGKT L KAVA + FI + + SK+ ES K ++++F
Sbjct: 524 ILLFGPPGTGKTMLAKAVATESG---------ANFIAVRGPEILSKWVGESEKAIREIFR 574
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGV--RVVNAVLTQID 129
K ++A + DEI+S+ R G GV R+VN +L ++D
Sbjct: 575 KARQAAP-----TVIFFDEIDSIAPIR-----GLSTDSGVTERIVNQLLAEMD 617
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
I R VLL+GPPGTGKT L KAVA + FI +N KY E ++
Sbjct: 197 IDPPRGVLLYGPPGTGKTMLVKAVANSTT---------ASFIRVNGSEFVQKYLGEGPRM 247
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
V+ +F + E S + IDEI+++ R +G + + R++ +L Q+D +
Sbjct: 248 VRDVFRMAR-----ENSPAIIFIDEIDAIATKRFDAQTGAD-REVQRILLELLNQMDGFE 301
Query: 133 KKS 135
+ S
Sbjct: 302 QSS 304
>sp|Q8RY16|PEX6_ARATH Peroxisome biogenesis protein 6 OS=Arabidopsis thaliana GN=PEX6
PE=1 SV=1
Length = 941
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 20/122 (16%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VLL+GPPGTGKT L KAVA + S+ F+ + L + Y ES K V+ +F
Sbjct: 694 VLLYGPPGTGKTLLAKAVATECSL---------NFLSVKGPELINMYIGESEKNVRDIFE 744
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGV--RVVNAVLTQIDQLKKKST 136
K + A + DE++SL AR + S GV RVV+ +L +ID L S
Sbjct: 745 KARSARP-----CVIFFDELDSLAPAR----GASGDSGGVMDRVVSQMLAEIDGLSDSSQ 795
Query: 137 GL 138
L
Sbjct: 796 DL 797
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMF 77
VLLHG PG GK ++ K VA++L + + +E + HSL + ++ + + F
Sbjct: 379 AVLLHGIPGCGKRTVVKYVARRLGLHV---------VEFSCHSLLASSERKTSTALAQTF 429
Query: 78 N 78
N
Sbjct: 430 N 430
>sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2
OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2
Length = 810
Score = 62.4 bits (150), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 18/131 (13%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQK 75
+R VL +GPPG GKT L KA+A + FI I L + +F ES V+
Sbjct: 516 SRGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVRD 566
Query: 76 MFNKIKEAVEYEESLVCLLIDEIESLTRAR-ESVMSGTEPSDGVRVVNAVLTQIDQLK-K 133
+F+K + A L DE++S+ +AR SV +D RV+N VLT++D + K
Sbjct: 567 VFDKARAAAP-----CVLFFDELDSIAKARGGSVGDAGGAAD--RVINQVLTEMDGMNAK 619
Query: 134 KSTGLSGRTLR 144
K+ + G T R
Sbjct: 620 KNVFIIGATNR 630
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 244 RGILLFGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKMSGESESNLRKA 294
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F + + + S L IDEI+++ RE E R+V+ +LT +D LK ++
Sbjct: 295 FAECE-----KNSPAILFIDEIDAIAPKREKAHGEVEK----RIVSQLLTLMDGLKTRA 344
>sp|A9WSI4|ARC_RENSM Proteasome-associated ATPase OS=Renibacterium salmoninarum (strain
ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB
2235) GN=arc PE=3 SV=1
Length = 594
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE----FIEINSHSLFSKYFSESGKLVQ 74
+LL+GPPG GKT + KAVA L+ R + + E F+ I L KY E+ + ++
Sbjct: 275 ILLYGPPGCGKTLIAKAVANSLAARAAERNGLKETKSFFLNIKGPELLDKYVGETERKIR 334
Query: 75 KMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVR--VVNAVLTQIDQLK 132
+F + +E + S V + DE++SL R R GT S V +V +L++ID ++
Sbjct: 335 LIFARAREKAS-DGSAVVVFFDEMDSLFRTR-----GTGVSSDVETTIVPQLLSEIDGVE 388
Query: 133 K 133
+
Sbjct: 389 R 389
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 61.6 bits (148), Expect = 5e-09, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 17/119 (14%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
+S R +LLHGPPGTGKT L + VA + + + IN S+ SKY E+
Sbjct: 276 VSPPRGILLHGPPGTGKTMLLRVVANTSNAHV---------LTINGPSIVSKYLGETEAA 326
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131
++ +FN EA +Y+ S++ IDEI+S+ R + SG S RVV +LT +D +
Sbjct: 327 LRDIFN---EARKYQPSII--FIDEIDSIAPNRANDDSGEVES---RVVATLLTLMDGM 377
Score = 52.0 bits (123), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
IS + VLL+GPPG KT KA+A + I F+ + +F+KY ES +
Sbjct: 547 ISAPKGVLLYGPPGCSKTLTAKALATESGI---------NFLAVKGPEIFNKYVGESERA 597
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
++++F K + A + DEI++L+ R+ G+ S V+ ++L +ID ++
Sbjct: 598 IREIFRKARSAAP-----SIIFFDEIDALSPDRD----GSSTSAANHVLTSLLNEIDGVE 648
Query: 133 K 133
+
Sbjct: 649 E 649
>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6
PE=3 SV=1
Length = 1201
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 20/119 (16%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL GPPGTGKT L KA+A + S+ F+ + L + Y ES K ++++FN
Sbjct: 955 ILLFGPPGTGKTLLAKAIATECSLN---------FLSVKGPELINMYIGESEKNIREIFN 1005
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGV--RVVNAVLTQIDQLKKKS 135
K ++A + DE++SL +R S GV RVV+ +L ++D ++K S
Sbjct: 1006 KARQA-----KPCVIFFDELDSLAPSR----GNGADSGGVMDRVVSQLLAELDGMQKSS 1055
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK--YKITEFIE 55
+N +LL+GP G GK +L VA+++ I + YK+ +F+E
Sbjct: 665 DFNCTLLLNGPQGVGKRTLLNRVAKQMGIHVYEVDCYKLYDFVE 708
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 61.6 bits (148), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK-KKSTG 137
K ++A L DE++S+ +AR + + RV+N +LT++D + KK+
Sbjct: 565 KARQAAP-----CVLFFDELDSIAKARGGNIGDGGGA-ADRVINQILTEMDGMSIKKNVF 618
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 619 IIGATNR 625
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL+GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 290 F---EEAEKNAPAII--FIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRA 339
>sp|P46462|TERA_RAT Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus
GN=Vcp PE=1 SV=3
Length = 806
Score = 61.6 bits (148), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK-KKSTG 137
K ++A L DE++S+ +AR + + RV+N +LT++D + KK+
Sbjct: 565 KARQAAP-----CVLFFDELDSIAKARGGNIGDGGGA-ADRVINQILTEMDGMSTKKNVF 618
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 619 IIGATNR 625
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL+GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 290 F---EEAEKNAPAII--FIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRA 339
>sp|P03974|TERA_PIG Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1
SV=5
Length = 806
Score = 61.6 bits (148), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK-KKSTG 137
K ++A L DE++S+ +AR + + RV+N +LT++D + KK+
Sbjct: 565 KARQAAP-----CVLFFDELDSIAKARGGNIGDGGGA-ADRVINQILTEMDGMSTKKNVF 618
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 619 IIGATNR 625
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL+GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 290 F---EEAEKNAPAII--FIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRA 339
>sp|Q01853|TERA_MOUSE Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp
PE=1 SV=4
Length = 806
Score = 61.6 bits (148), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK-KKSTG 137
K ++A L DE++S+ +AR + + RV+N +LT++D + KK+
Sbjct: 565 KARQAAP-----CVLFFDELDSIAKARGGNIGDGGGA-ADRVINQILTEMDGMSTKKNVF 618
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 619 IIGATNR 625
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL+GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 290 F---EEAEKNAPAII--FIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRA 339
>sp|P55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP
PE=1 SV=4
Length = 806
Score = 61.6 bits (148), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK-KKSTG 137
K ++A L DE++S+ +AR + + RV+N +LT++D + KK+
Sbjct: 565 KARQAAP-----CVLFFDELDSIAKARGGNIGDGGGA-ADRVINQILTEMDGMSTKKNVF 618
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 619 IIGATNR 625
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL+GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 290 F---EEAEKNAPAII--FIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRA 339
>sp|Q3ZBT1|TERA_BOVIN Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=2
SV=1
Length = 806
Score = 61.6 bits (148), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK-KKSTG 137
K ++A L DE++S+ +AR + + RV+N +LT++D + KK+
Sbjct: 565 KARQAAP-----CVLFFDELDSIAKARGGNIGDGGGA-ADRVINQILTEMDGMSTKKNVF 618
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 619 IIGATNR 625
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL+GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 290 F---EEAEKNAPAII--FIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRA 339
>sp|Q7ZU99|TERA_DANRE Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp
PE=1 SV=1
Length = 806
Score = 61.2 bits (147), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL-KKKSTG 137
K ++A L DE++S+ +AR + + RV+N +LT++D + KK+
Sbjct: 565 KARQAAP-----CVLFFDELDSIAKARGGNVGDGGGA-ADRVINQILTEMDGMSSKKNVF 618
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 619 IIGATNR 625
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL+GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 290 F---EEAEKNAPAII--FIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRA 339
>sp|Q9P3A7|CDC48_SCHPO Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc48 PE=1 SV=2
Length = 815
Score = 61.2 bits (147), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 17/127 (13%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL GPPGTGKT L KA+A + S FI + L S +F ES V+ +F+
Sbjct: 534 VLFFGPPGTGKTLLAKAIANECS---------ANFISVKGPELLSMWFGESESNVRDIFD 584
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK-KKSTG 137
K + A + +DE++S+ +AR + + RVVN +LT++D + KK+
Sbjct: 585 KARAAAP-----CVVFLDELDSIAKARGASAGDSGGG--DRVVNQLLTEMDGVNSKKNVF 637
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 638 VIGATNR 644
Score = 55.1 bits (131), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +L++GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETG---------AFFFLINGPEIMSKMAGESESNLRKA 309
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F + + + S + IDEI+S+ RE E RVV+ +LT +D +K +S
Sbjct: 310 FEEAE-----KNSPAIIFIDEIDSIAPKREKTNGEVER----RVVSQLLTLMDGMKARS 359
>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis
GN=vcp PE=2 SV=1
Length = 805
Score = 61.2 bits (147), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK-KKSTG 137
K ++A L DE++S+ +AR + + RV+N +LT++D + KK+
Sbjct: 565 KARQAAP-----CVLFFDELDSIAKARGGNIGDGGGA-ADRVINQILTEMDGMSTKKNVF 618
Query: 138 LSGRTLR 144
+ G T R
Sbjct: 619 IIGATNR 625
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL+GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 289
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F +EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 290 F---EEAEKNAPAII--FIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLKQRA 339
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
I+ + VLL+GPPGTGKT L +AVA + FI ++ L KY E ++
Sbjct: 192 IAQPKGVLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKYIGEGSRM 242
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQID 129
V+++F + E + + +DEI+S+ AR SG S+ R + +L Q+D
Sbjct: 243 VRELF-----VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 294
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
I+ + VLL+GPPGTGKT L +AVA + FI ++ L KY E ++
Sbjct: 192 IAQPKGVLLYGPPGTGKTLLARAVAH---------HTDCTFIRVSGSELVQKYIGEGSRM 242
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQID 129
V+++F + E + + +DEI+S+ AR SG S+ R + +L Q+D
Sbjct: 243 VRELF-----VMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLD 294
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 60.8 bits (146), Expect = 8e-09, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 16/130 (12%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQK 75
+R VL +GPPG GKT L KA+A + FI + L + +F ES V+
Sbjct: 508 SRGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELLTMWFGESEANVRD 558
Query: 76 MFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL-KKK 134
+F+K + A L DE++S+ +AR + G RV+N +LT++D + KK
Sbjct: 559 IFDKARSAAP-----CVLFFDELDSIAKARGGNV-GDAGGAADRVINQILTEMDGMGAKK 612
Query: 135 STGLSGRTLR 144
+ + G T R
Sbjct: 613 NVFIIGATNR 622
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +L++GPPGTGKT + +AVA + F IN + SK ES ++K
Sbjct: 236 RGILMYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKA 286
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F + + + S + IDEI+++ R+ E R+V+ +LT +D +KK S
Sbjct: 287 FEEAE-----KNSPAIIFIDEIDAIAPKRDKTHGEVER----RIVSQLLTLMDGMKKSS 336
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64
H K I R VLL+GPPGTGKT L KAVA + FI + K
Sbjct: 183 HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAH---------HTTAAFIRVVGSEFVQK 233
Query: 65 YFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAV 124
Y E ++V+ +F K E + + IDE++++ AR +G + + R++ +
Sbjct: 234 YLGEGPRMVRDVFRLAK-----ENAPAIIFIDEVDAIATARFDAQTGAD-REVQRILMEL 287
Query: 125 LTQID 129
L Q+D
Sbjct: 288 LNQMD 292
>sp|A1R6Q4|ARC_ARTAT Proteasome-associated ATPase OS=Arthrobacter aurescens (strain TC1)
GN=arc PE=3 SV=1
Length = 602
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE----FIEINSHSLFSKYFSESGKLVQ 74
+LL+GPPG GKT + KAVA L+ R + T+ F+ I L KY E+ + ++
Sbjct: 283 ILLYGPPGCGKTLIAKAVANSLAARAAERAGNTDLKSYFLNIKGPELLDKYVGETERHIR 342
Query: 75 KMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVR--VVNAVLTQIDQLK 132
+F++ +E + S V + DE++SL R R GT S V +V +L++ID ++
Sbjct: 343 LIFSRAREKAS-DGSPVVVFFDEMDSLFRTR-----GTGVSSDVETTIVPQLLSEIDGVE 396
Query: 133 K 133
+
Sbjct: 397 R 397
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
I R VLL+GPPGTGKT L KAVA FI +N KY E ++
Sbjct: 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK---------AAFIRVNGSEFVHKYLGEGPRM 253
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQID 129
V+ +F + E + + IDE++S+ R +G++ + R++ +LTQ+D
Sbjct: 254 VRDVFR-----LARENAPSIIFIDEVDSIATKRFDAQTGSD-REVQRILIELLTQMD 304
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64
H K I R VLL+GPPGTGKT L KAVA + FI + K
Sbjct: 178 HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN---------HTTAAFIRVVGSEFVQK 228
Query: 65 YFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAV 124
Y E ++V+ +F K E + + IDE++++ AR +G + + R++ +
Sbjct: 229 YLGEGPRMVRDVFRLAK-----ENAPAIIFIDEVDAIATARFDAQTGAD-REVQRILMEL 282
Query: 125 LTQID 129
L Q+D
Sbjct: 283 LNQMD 287
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64
H K I R VLL+GPPGTGKT L KAVA + FI + K
Sbjct: 184 HELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVA---------NHTTAAFIRVVGSEFVQK 234
Query: 65 YFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAV 124
Y E ++V+ +F K E + + IDE++++ AR +G + + R++ +
Sbjct: 235 YLGEGPRMVRDVFRLAK-----ENAPAIIFIDEVDAIATARFDAQTGAD-REVQRILMEL 288
Query: 125 LTQID 129
L Q+D
Sbjct: 289 LNQMD 293
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64
H+ K I R VLL+GPPGTGKT L KAVA S FI + K
Sbjct: 173 HNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTS---------AAFIRVVGSEFVQK 223
Query: 65 YFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAV 124
Y E +LV+ +F + E S + IDEI+++ R +G + + R++ +
Sbjct: 224 YLGEGPRLVRDVFR-----LARENSPAIIFIDEIDAIATKRFDAQTGAD-REVQRILMEL 277
Query: 125 LTQID 129
L Q+D
Sbjct: 278 LNQMD 282
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 60.5 bits (145), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
+S ++ VL +GPPG GKT L KA+A + FI + L + +F ES
Sbjct: 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELLTMWFGESEAN 562
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
V+++F+K +++ L DE++S+ R S SG RV+N +LT++D +
Sbjct: 563 VREIFDKARQSAP-----CVLFFDELDSIATQRGS-SSGDAGGAADRVLNQLLTEMDGMN 616
Query: 133 KKST 136
K T
Sbjct: 617 AKKT 620
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL+GPPG+GKT + +AVA + F IN + SK ES ++K F
Sbjct: 245 ILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKLAGESESNLRKAF- 294
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
+EA + S++ IDEI+S+ RE E R+V+ +LT +D LK ++
Sbjct: 295 --EEAEKNAPSII--FIDEIDSIAPKREKTHGEVER----RIVSQLLTLMDGLKSRA 343
>sp|O43078|ALF1_SCHPO ATPase-like fidgetin OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=alf1 PE=1 SV=1
Length = 660
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL GPPGTGKT L +AVA ++ K T F I++ SL SKY +S KLV+ +F
Sbjct: 415 MLLFGPPGTGKTMLARAVA--------TEAKAT-FFSISASSLTSKYLGDSEKLVRALFE 465
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL----KKK 134
V ++ + +DEI+S+ AR SG E R+ L Q L K
Sbjct: 466 -----VAKRQTCSVIFVDEIDSILSARND--SGNEHESSRRLKTEFLIQWSSLTNAAPDK 518
Query: 135 STGLSGRTL 143
TG S R L
Sbjct: 519 QTGHSPRVL 527
>sp|Q8FTE3|ARC_COREF AAA ATPase forming ring-shaped complexes OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=arc PE=3 SV=1
Length = 526
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VLL+GPPG GKT + KAVA LS R+ + FI + L +KY E+ + ++ +F
Sbjct: 250 VLLYGPPGCGKTLIAKAVANSLSQRI-GDAGTSYFINVKGPELLNKYVGETERQIRVIFE 308
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMS 110
+ +E + + V + DE+ES+ R R S +S
Sbjct: 309 RARE-LAGDGRPVIIFFDEMESIFRTRGSGIS 339
>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16E9.10c PE=1 SV=1
Length = 779
Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 64/122 (52%), Gaps = 22/122 (18%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R VLLHGPPG GKT L A+A +L + FI I++ S+ S ES K
Sbjct: 209 RGVLLHGPPGCGKTMLANALANELGV---------PFISISAPSIVSGMSGESEK----- 254
Query: 77 FNKIKEAVEYEESLV-CLL-IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK 134
K++E E +SL CL+ IDEI+++T RES E R+V LT +D+L +
Sbjct: 255 --KVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMER----RIVAQFLTCMDELSFE 308
Query: 135 ST 136
T
Sbjct: 309 KT 310
Score = 57.8 bits (138), Expect = 8e-08, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 18/117 (15%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VLL GPPG GKT L KAVA +SK FI I L +KY ES + V+++F
Sbjct: 529 VLLWGPPGCGKTLLAKAVAN------ESK---ANFISIRGPELLNKYVGESERAVRQVFL 579
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
+ + + S + DE++++ R+ +S E S RVVN +LT++D L +S
Sbjct: 580 RARAS-----SPCVIFFDELDAMVPRRDDSLS--EASS--RVVNTLLTELDGLSDRS 627
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,531,823
Number of Sequences: 539616
Number of extensions: 3218543
Number of successful extensions: 21092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 928
Number of HSP's that attempted gapping in prelim test: 19176
Number of HSP's gapped (non-prelim): 2633
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)