Query psy3997
Match_columns 256
No_of_seqs 194 out of 2602
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:42:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-40 2.5E-45 285.6 8.0 183 3-248 177-361 (406)
2 KOG0739|consensus 100.0 2.3E-38 5.1E-43 265.4 10.9 177 15-250 165-341 (439)
3 KOG0738|consensus 100.0 2.3E-37 5E-42 267.1 11.4 183 10-248 239-421 (491)
4 KOG0730|consensus 100.0 8.7E-37 1.9E-41 278.5 8.6 175 13-248 465-641 (693)
5 KOG0733|consensus 100.0 7.3E-36 1.6E-40 269.7 7.3 180 12-249 541-723 (802)
6 KOG0733|consensus 100.0 1.6E-35 3.4E-40 267.6 6.7 179 9-232 216-396 (802)
7 COG1223 Predicted ATPase (AAA+ 100.0 7.9E-35 1.7E-39 240.1 9.6 173 16-248 151-323 (368)
8 KOG0734|consensus 100.0 7E-34 1.5E-38 253.6 8.1 180 3-248 329-510 (752)
9 KOG0737|consensus 100.0 4.5E-32 9.7E-37 233.8 9.0 181 10-249 121-301 (386)
10 KOG0727|consensus 100.0 4.8E-32 1E-36 223.2 7.5 177 8-230 181-359 (408)
11 KOG0728|consensus 100.0 1.2E-31 2.6E-36 220.5 8.6 178 2-230 172-351 (404)
12 KOG0735|consensus 100.0 1.5E-31 3.3E-36 245.1 7.4 180 3-248 693-874 (952)
13 KOG0736|consensus 100.0 4.3E-31 9.4E-36 244.0 9.3 177 11-231 700-878 (953)
14 KOG0740|consensus 100.0 1.4E-30 2.9E-35 231.5 10.7 184 7-248 177-360 (428)
15 KOG0652|consensus 100.0 6.7E-31 1.5E-35 217.3 7.4 183 3-248 197-381 (424)
16 KOG0744|consensus 100.0 5E-30 1.1E-34 217.3 11.6 179 1-209 162-340 (423)
17 CHL00195 ycf46 Ycf46; Provisio 100.0 4.1E-30 8.9E-35 235.8 10.9 177 11-248 254-433 (489)
18 PLN00020 ribulose bisphosphate 100.0 1.3E-29 2.8E-34 220.6 10.5 182 12-231 144-331 (413)
19 KOG0731|consensus 100.0 3.9E-30 8.4E-35 241.0 7.6 185 8-248 336-522 (774)
20 COG0464 SpoVK ATPases of the A 100.0 1.2E-29 2.7E-34 235.6 9.8 177 12-248 272-451 (494)
21 KOG0726|consensus 100.0 1.1E-30 2.3E-35 218.9 1.6 182 9-248 212-395 (440)
22 TIGR01243 CDC48 AAA family ATP 100.0 4.3E-29 9.3E-34 241.4 9.6 177 12-248 483-661 (733)
23 KOG0729|consensus 100.0 1.2E-29 2.6E-34 210.5 3.4 174 11-230 206-381 (435)
24 PTZ00454 26S protease regulato 100.0 1.2E-28 2.5E-33 221.7 9.8 182 9-248 172-355 (398)
25 COG0465 HflB ATP-dependent Zn 99.9 1.7E-28 3.8E-33 226.2 7.3 181 10-248 177-359 (596)
26 KOG0741|consensus 99.9 3.5E-28 7.6E-33 217.1 6.2 188 9-248 249-444 (744)
27 PRK03992 proteasome-activating 99.9 2.1E-27 4.6E-32 213.9 10.2 182 9-248 158-341 (389)
28 TIGR01241 FtsH_fam ATP-depende 99.9 2.5E-27 5.4E-32 220.0 9.8 179 12-248 84-264 (495)
29 KOG0651|consensus 99.9 1.3E-27 2.9E-32 201.6 5.8 177 3-230 158-336 (388)
30 PTZ00361 26 proteosome regulat 99.9 5.2E-27 1.1E-31 212.5 9.1 180 11-248 212-393 (438)
31 TIGR03689 pup_AAA proteasome A 99.9 9.9E-27 2.1E-31 213.4 9.1 173 9-215 209-384 (512)
32 CHL00176 ftsH cell division pr 99.9 4.2E-26 9.1E-31 215.3 10.3 180 11-248 211-392 (638)
33 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.4E-26 5.2E-31 229.4 7.7 174 12-248 1626-1846(2281)
34 TIGR01242 26Sp45 26S proteasom 99.9 4.5E-25 9.7E-30 197.7 9.2 181 10-248 150-332 (364)
35 PRK10733 hflB ATP-dependent me 99.9 1.2E-24 2.6E-29 207.1 11.2 179 12-248 181-361 (644)
36 KOG0730|consensus 99.9 2.9E-25 6.3E-30 203.3 5.9 174 9-232 211-386 (693)
37 KOG0732|consensus 99.9 1.4E-24 3.1E-29 208.7 6.3 180 11-233 294-475 (1080)
38 TIGR01243 CDC48 AAA family ATP 99.9 8E-24 1.7E-28 204.8 9.4 173 10-231 206-380 (733)
39 KOG0742|consensus 99.9 2.1E-22 4.5E-27 175.8 7.5 149 15-212 383-531 (630)
40 PF00004 AAA: ATPase family as 99.8 1.2E-21 2.7E-26 149.9 5.9 131 19-185 1-132 (132)
41 TIGR02881 spore_V_K stage V sp 99.8 2.8E-18 6E-23 147.1 10.7 168 16-227 42-209 (261)
42 CHL00181 cbbX CbbX; Provisiona 99.8 5.3E-18 1.2E-22 146.9 10.5 155 16-213 59-213 (287)
43 KOG0743|consensus 99.7 3.4E-18 7.4E-23 151.8 7.1 156 8-213 227-387 (457)
44 TIGR02880 cbbX_cfxQ probable R 99.7 2.8E-17 6.1E-22 142.4 11.9 169 15-226 57-225 (284)
45 TIGR02639 ClpA ATP-dependent C 99.7 4.7E-16 1E-20 150.7 11.6 171 16-232 203-385 (731)
46 KOG0736|consensus 99.7 2.8E-16 6.2E-21 146.5 9.4 172 14-248 429-602 (953)
47 COG2256 MGS1 ATPase related to 99.6 1.3E-15 2.8E-20 133.6 10.0 74 16-106 48-121 (436)
48 KOG0735|consensus 99.6 6E-15 1.3E-19 136.7 10.7 178 13-231 428-608 (952)
49 PRK00080 ruvB Holliday junctio 99.6 4.6E-15 1E-19 131.2 9.7 163 15-235 50-219 (328)
50 TIGR00635 ruvB Holliday juncti 99.6 1.1E-14 2.4E-19 127.4 9.0 167 15-235 29-198 (305)
51 PRK11034 clpA ATP-dependent Cl 99.6 2.4E-14 5.2E-19 138.0 12.0 171 16-232 207-389 (758)
52 PF05496 RuvB_N: Holliday junc 99.6 3.7E-15 8E-20 122.7 5.3 162 16-231 50-214 (233)
53 TIGR03345 VI_ClpV1 type VI sec 99.5 3.4E-14 7.4E-19 139.1 12.3 172 16-233 208-391 (852)
54 PRK00149 dnaA chromosomal repl 99.5 2.4E-14 5.2E-19 131.8 10.5 167 17-234 149-318 (450)
55 TIGR00763 lon ATP-dependent pr 99.5 8.2E-15 1.8E-19 142.8 7.7 146 16-209 347-505 (775)
56 TIGR00362 DnaA chromosomal rep 99.5 4.5E-14 9.7E-19 128.4 9.9 168 16-234 136-306 (405)
57 KOG0989|consensus 99.5 4.5E-14 9.8E-19 120.0 8.2 164 16-233 57-225 (346)
58 PRK06893 DNA replication initi 99.5 1.1E-13 2.4E-18 116.4 10.5 159 16-237 39-202 (229)
59 PRK10865 protein disaggregatio 99.5 1E-13 2.2E-18 136.0 11.3 171 16-232 199-381 (857)
60 PRK13342 recombination factor 99.5 3E-13 6.5E-18 123.2 12.2 154 16-234 36-192 (413)
61 PRK14088 dnaA chromosomal repl 99.5 2.5E-13 5.4E-18 124.4 11.6 168 17-234 131-301 (440)
62 KOG2028|consensus 99.5 2.6E-13 5.7E-18 117.8 10.6 78 16-106 162-239 (554)
63 TIGR03346 chaperone_ClpB ATP-d 99.5 2.9E-13 6.3E-18 133.2 12.2 172 16-233 194-377 (852)
64 PLN03025 replication factor C 99.5 3.3E-13 7.1E-18 119.0 11.2 171 17-245 35-207 (319)
65 PRK05342 clpX ATP-dependent pr 99.5 3.4E-13 7.4E-18 122.0 11.4 107 14-131 106-214 (412)
66 CHL00095 clpC Clp protease ATP 99.5 2.2E-13 4.7E-18 133.7 10.6 172 15-233 199-382 (821)
67 TIGR00382 clpX endopeptidase C 99.5 4.5E-13 9.8E-18 120.8 11.1 106 16-132 116-223 (413)
68 PRK04195 replication factor C 99.5 2.4E-13 5.2E-18 126.2 9.3 164 16-240 39-204 (482)
69 PRK08727 hypothetical protein; 99.4 7.1E-13 1.5E-17 111.8 11.2 159 16-235 41-201 (233)
70 PRK12422 chromosomal replicati 99.4 8E-13 1.7E-17 121.0 12.0 167 17-235 142-310 (445)
71 PRK13341 recombination factor 99.4 7.5E-13 1.6E-17 127.2 12.2 158 16-237 52-216 (725)
72 PRK14962 DNA polymerase III su 99.4 6.6E-13 1.4E-17 122.2 11.4 165 16-235 36-215 (472)
73 PRK14086 dnaA chromosomal repl 99.4 9.3E-13 2E-17 123.2 12.0 168 17-234 315-484 (617)
74 TIGR03420 DnaA_homol_Hda DnaA 99.4 7.9E-13 1.7E-17 110.6 9.9 160 14-234 36-197 (226)
75 PRK14956 DNA polymerase III su 99.4 1.2E-12 2.6E-17 119.5 11.7 164 16-234 40-218 (484)
76 PRK00411 cdc6 cell division co 99.4 8.3E-13 1.8E-17 119.5 10.4 175 15-232 54-248 (394)
77 TIGR02928 orc1/cdc6 family rep 99.4 1.5E-12 3.2E-17 116.7 11.7 181 15-234 39-242 (365)
78 PRK08084 DNA replication initi 99.4 1.8E-12 4E-17 109.4 11.3 157 16-235 45-206 (235)
79 TIGR00390 hslU ATP-dependent p 99.4 4.3E-13 9.3E-18 119.9 7.5 57 15-80 46-104 (441)
80 COG2255 RuvB Holliday junction 99.4 4.9E-13 1.1E-17 112.7 7.2 161 16-230 52-215 (332)
81 PTZ00112 origin recognition co 99.4 4.4E-12 9.5E-17 121.3 13.0 173 17-233 782-976 (1164)
82 PRK12323 DNA polymerase III su 99.4 3.8E-12 8.1E-17 119.3 12.3 164 16-234 38-221 (700)
83 PF00308 Bac_DnaA: Bacterial d 99.4 1E-12 2.2E-17 109.8 7.5 167 17-234 35-204 (219)
84 PRK07003 DNA polymerase III su 99.4 2.8E-12 6E-17 121.7 11.3 163 16-233 38-215 (830)
85 PRK12402 replication factor C 99.4 1.9E-12 4.1E-17 114.6 9.1 169 17-237 37-225 (337)
86 PRK05201 hslU ATP-dependent pr 99.4 8.5E-13 1.8E-17 118.1 6.3 56 16-80 50-107 (443)
87 PRK14087 dnaA chromosomal repl 99.4 6.5E-12 1.4E-16 115.4 12.3 173 17-237 142-318 (450)
88 PRK14961 DNA polymerase III su 99.4 7.1E-12 1.5E-16 112.4 11.7 164 15-233 37-215 (363)
89 TIGR01650 PD_CobS cobaltochela 99.3 7.9E-13 1.7E-17 115.3 5.2 152 14-208 62-232 (327)
90 KOG1969|consensus 99.3 3.3E-12 7.2E-17 119.1 9.3 166 14-234 324-506 (877)
91 PRK05642 DNA replication initi 99.3 7.9E-12 1.7E-16 105.5 10.4 160 16-236 45-206 (234)
92 COG0464 SpoVK ATPases of the A 99.3 2.7E-12 5.8E-17 119.6 8.1 172 8-230 10-183 (494)
93 PHA02544 44 clamp loader, smal 99.3 1.5E-11 3.2E-16 108.2 12.1 156 16-234 43-205 (316)
94 PRK06645 DNA polymerase III su 99.3 1.2E-11 2.5E-16 114.6 11.7 165 16-235 43-226 (507)
95 TIGR02640 gas_vesic_GvpN gas v 99.3 7.4E-12 1.6E-16 107.4 9.3 157 16-209 21-198 (262)
96 PRK14960 DNA polymerase III su 99.3 1.9E-11 4.2E-16 114.8 12.7 167 16-237 37-218 (702)
97 KOG0991|consensus 99.3 1.1E-11 2.4E-16 101.9 9.1 177 17-249 49-225 (333)
98 PRK14964 DNA polymerase III su 99.3 2.5E-11 5.4E-16 111.8 12.3 165 15-234 34-213 (491)
99 PRK14949 DNA polymerase III su 99.3 2E-11 4.4E-16 117.8 12.1 164 15-233 37-215 (944)
100 COG1474 CDC6 Cdc6-related prot 99.3 2.8E-11 6.2E-16 108.1 12.3 150 15-209 41-203 (366)
101 PRK08903 DnaA regulatory inact 99.3 1.6E-11 3.4E-16 103.1 9.7 153 15-234 41-195 (227)
102 PRK07940 DNA polymerase III su 99.3 2.4E-11 5.1E-16 109.6 11.1 159 15-232 35-207 (394)
103 COG1219 ClpX ATP-dependent pro 99.3 9.5E-12 2.1E-16 106.4 8.0 108 16-134 97-206 (408)
104 PRK07994 DNA polymerase III su 99.3 2.7E-11 5.8E-16 114.7 11.7 163 16-233 38-215 (647)
105 PRK14958 DNA polymerase III su 99.3 3.3E-11 7.2E-16 112.1 11.9 166 15-235 37-217 (509)
106 TIGR02397 dnaX_nterm DNA polym 99.3 5.2E-11 1.1E-15 106.3 11.7 166 15-235 35-215 (355)
107 PF07724 AAA_2: AAA domain (Cd 99.3 8.2E-12 1.8E-16 100.3 5.8 105 16-132 3-107 (171)
108 PRK08691 DNA polymerase III su 99.2 6.1E-11 1.3E-15 112.2 12.1 166 15-235 37-217 (709)
109 PRK14963 DNA polymerase III su 99.2 4.6E-11 9.9E-16 111.0 10.6 166 15-235 35-214 (504)
110 KOG0745|consensus 99.2 3.3E-11 7.1E-16 106.8 8.8 153 14-189 224-389 (564)
111 PRK05896 DNA polymerase III su 99.2 9.1E-11 2E-15 109.9 12.3 164 15-233 37-215 (605)
112 COG0714 MoxR-like ATPases [Gen 99.2 4.9E-12 1.1E-16 112.0 3.6 141 16-187 43-190 (329)
113 PRK14959 DNA polymerase III su 99.2 1.2E-10 2.7E-15 109.5 13.1 163 16-233 38-215 (624)
114 PRK11331 5-methylcytosine-spec 99.2 1.7E-11 3.7E-16 110.9 7.0 144 15-184 193-357 (459)
115 PRK11034 clpA ATP-dependent Cl 99.2 2.3E-11 5E-16 117.5 8.4 137 17-188 489-655 (758)
116 PRK05563 DNA polymerase III su 99.2 7.1E-11 1.5E-15 111.2 11.1 165 15-234 37-216 (559)
117 PF07726 AAA_3: ATPase family 99.2 4.2E-13 9E-18 101.2 -3.4 126 19-178 2-130 (131)
118 PRK07133 DNA polymerase III su 99.2 1.3E-10 2.8E-15 110.9 12.2 164 15-233 39-214 (725)
119 PRK10787 DNA-binding ATP-depen 99.2 1.6E-11 3.5E-16 119.3 6.4 145 16-209 349-506 (784)
120 PRK14957 DNA polymerase III su 99.2 1.5E-10 3.2E-15 108.1 12.4 163 16-233 38-215 (546)
121 PRK14952 DNA polymerase III su 99.2 1.8E-10 3.9E-15 108.4 12.4 163 16-233 35-214 (584)
122 PRK14969 DNA polymerase III su 99.2 1.4E-10 2.9E-15 108.6 11.3 163 16-233 38-215 (527)
123 TIGR02639 ClpA ATP-dependent C 99.2 9.9E-11 2.1E-15 113.8 10.4 83 18-131 486-580 (731)
124 PRK07764 DNA polymerase III su 99.2 1E-10 2.2E-15 114.0 10.4 162 16-232 37-215 (824)
125 TIGR00678 holB DNA polymerase 99.2 2.6E-10 5.6E-15 92.9 11.2 159 15-233 13-186 (188)
126 PRK00440 rfc replication facto 99.2 1.4E-10 3.1E-15 101.8 10.4 161 17-235 39-200 (319)
127 PRK14951 DNA polymerase III su 99.2 1.6E-10 3.4E-15 109.3 11.1 167 16-237 38-224 (618)
128 cd00009 AAA The AAA+ (ATPases 99.2 6.4E-11 1.4E-15 91.0 6.7 78 16-101 19-96 (151)
129 PRK14953 DNA polymerase III su 99.2 3.8E-10 8.3E-15 104.5 12.7 165 15-234 37-216 (486)
130 PRK14965 DNA polymerase III su 99.2 3.4E-10 7.3E-15 107.1 12.3 165 15-234 37-216 (576)
131 PRK14970 DNA polymerase III su 99.2 1.7E-10 3.8E-15 103.6 9.9 165 15-234 38-205 (367)
132 PF07728 AAA_5: AAA domain (dy 99.1 2.5E-12 5.5E-17 99.6 -2.9 84 18-131 1-92 (139)
133 COG0466 Lon ATP-dependent Lon 99.1 6.9E-11 1.5E-15 110.5 6.0 172 17-226 351-555 (782)
134 PRK06620 hypothetical protein; 99.1 3.1E-10 6.8E-15 94.4 9.3 142 17-237 45-188 (214)
135 KOG2004|consensus 99.1 4.3E-11 9.3E-16 111.6 4.2 175 16-228 438-645 (906)
136 PRK14948 DNA polymerase III su 99.1 6.3E-10 1.4E-14 105.8 11.9 163 16-233 38-217 (620)
137 smart00382 AAA ATPases associa 99.1 1.7E-10 3.6E-15 87.8 6.7 79 16-105 2-94 (148)
138 PRK06647 DNA polymerase III su 99.1 8E-10 1.7E-14 104.0 11.9 164 15-233 37-215 (563)
139 COG0593 DnaA ATPase involved i 99.1 6.2E-10 1.3E-14 99.8 10.4 167 16-233 113-281 (408)
140 COG0542 clpA ATP-binding subun 99.1 1.8E-10 3.8E-15 110.1 7.3 86 17-130 522-619 (786)
141 PRK09111 DNA polymerase III su 99.1 9.4E-10 2E-14 104.0 11.6 165 15-234 45-229 (598)
142 TIGR02902 spore_lonB ATP-depen 99.1 2.4E-10 5.3E-15 107.1 7.6 46 15-60 85-131 (531)
143 PRK14955 DNA polymerase III su 99.1 1.7E-09 3.7E-14 98.2 12.7 165 16-235 38-225 (397)
144 PRK06305 DNA polymerase III su 99.1 1.1E-09 2.4E-14 100.7 11.4 166 15-235 38-219 (451)
145 PRK08116 hypothetical protein; 99.1 1.8E-09 3.8E-14 92.9 12.0 72 16-100 114-189 (268)
146 PRK08451 DNA polymerase III su 99.0 2E-09 4.4E-14 100.1 11.1 166 15-235 35-215 (535)
147 PRK13531 regulatory ATPase Rav 99.0 2.3E-10 4.9E-15 104.5 4.5 140 16-188 39-182 (498)
148 PHA02244 ATPase-like protein 99.0 3.8E-10 8.2E-15 99.8 5.2 137 14-188 117-263 (383)
149 PRK09087 hypothetical protein; 99.0 8.4E-10 1.8E-14 92.6 7.0 147 16-236 44-193 (226)
150 PRK12377 putative replication 99.0 3E-09 6.6E-14 90.2 9.9 73 16-101 101-175 (248)
151 PRK14950 DNA polymerase III su 99.0 4.5E-09 9.8E-14 99.8 11.8 163 16-233 38-216 (585)
152 TIGR03345 VI_ClpV1 type VI sec 99.0 2.2E-09 4.8E-14 105.6 9.3 87 16-130 595-694 (852)
153 PRK06835 DNA replication prote 99.0 5.7E-09 1.2E-13 92.1 10.9 122 16-179 183-307 (329)
154 CHL00095 clpC Clp protease ATP 99.0 2.9E-09 6.2E-14 104.9 9.7 85 18-130 541-637 (821)
155 PRK08181 transposase; Validate 98.9 1.5E-09 3.3E-14 93.1 6.7 76 15-103 105-181 (269)
156 TIGR03346 chaperone_ClpB ATP-d 98.9 2.4E-09 5.2E-14 105.7 8.9 87 16-130 595-693 (852)
157 COG0470 HolB ATPase involved i 98.9 3.4E-09 7.3E-14 93.2 8.9 132 15-187 23-169 (325)
158 PRK04132 replication factor C 98.9 4E-09 8.7E-14 102.6 9.3 159 19-235 567-728 (846)
159 PF05673 DUF815: Protein of un 98.9 1.4E-08 3.1E-13 84.9 11.2 144 15-211 51-209 (249)
160 PRK14954 DNA polymerase III su 98.9 1.4E-08 3.1E-13 96.3 12.5 167 15-236 37-226 (620)
161 PRK07952 DNA replication prote 98.9 8.2E-09 1.8E-13 87.4 9.5 72 17-101 100-174 (244)
162 PRK09112 DNA polymerase III su 98.9 2.2E-08 4.9E-13 89.2 12.0 167 16-233 45-235 (351)
163 PRK05707 DNA polymerase III su 98.9 1.2E-08 2.7E-13 90.1 10.2 131 15-187 21-166 (328)
164 TIGR02903 spore_lon_C ATP-depe 98.9 1E-08 2.2E-13 97.8 9.9 48 14-61 173-221 (615)
165 PRK10865 protein disaggregatio 98.9 6.3E-09 1.4E-13 102.6 8.6 89 17-130 599-696 (857)
166 PRK14971 DNA polymerase III su 98.9 1.9E-08 4.2E-13 95.7 11.2 168 15-237 38-221 (614)
167 PRK13407 bchI magnesium chelat 98.9 1E-09 2.2E-14 96.9 2.2 84 91-208 130-215 (334)
168 PRK06526 transposase; Provisio 98.8 5E-09 1.1E-13 89.3 5.3 76 15-103 97-173 (254)
169 PRK06921 hypothetical protein; 98.8 1.5E-08 3.3E-13 87.0 7.5 72 16-100 117-188 (266)
170 PF01695 IstB_IS21: IstB-like 98.8 6E-09 1.3E-13 84.3 4.8 74 15-101 46-120 (178)
171 CHL00081 chlI Mg-protoporyphyr 98.8 9.2E-09 2E-13 91.1 5.9 73 90-187 145-219 (350)
172 COG1484 DnaC DNA replication p 98.8 1.6E-08 3.5E-13 86.3 7.0 75 15-102 104-180 (254)
173 PRK08939 primosomal protein Dn 98.8 1.2E-08 2.5E-13 89.3 5.9 74 15-101 155-229 (306)
174 PF00158 Sigma54_activat: Sigm 98.7 5.4E-08 1.2E-12 77.9 8.6 88 14-130 20-119 (168)
175 KOG0741|consensus 98.7 8.9E-08 1.9E-12 87.3 10.5 74 15-104 537-613 (744)
176 PRK09183 transposase/IS protei 98.7 3.2E-08 6.8E-13 84.8 7.2 78 13-102 99-177 (259)
177 TIGR03015 pepcterm_ATPase puta 98.7 5.7E-07 1.2E-11 77.1 14.9 26 16-41 43-68 (269)
178 COG0542 clpA ATP-binding subun 98.7 5.5E-08 1.2E-12 93.3 8.8 87 16-107 191-280 (786)
179 KOG0990|consensus 98.7 8.7E-09 1.9E-13 88.5 2.8 164 18-235 64-229 (360)
180 COG1224 TIP49 DNA helicase TIP 98.6 4.7E-08 1E-12 85.2 5.9 57 16-80 65-121 (450)
181 PRK07471 DNA polymerase III su 98.6 9.4E-08 2E-12 85.7 8.0 27 15-41 40-66 (365)
182 PF13401 AAA_22: AAA domain; P 98.6 1E-07 2.3E-12 72.5 7.0 85 16-102 4-100 (131)
183 PF06068 TIP49: TIP49 C-termin 98.6 5.5E-08 1.2E-12 85.7 6.0 48 16-70 50-97 (398)
184 TIGR02031 BchD-ChlD magnesium 98.6 3.6E-08 7.7E-13 93.6 5.2 152 16-209 16-174 (589)
185 TIGR01618 phage_P_loop phage n 98.6 1.7E-07 3.6E-12 78.0 8.4 104 16-133 12-131 (220)
186 TIGR02030 BchI-ChlI magnesium 98.6 4.4E-08 9.4E-13 86.7 4.9 25 16-40 25-49 (337)
187 PRK05564 DNA polymerase III su 98.6 3.2E-07 7E-12 80.7 9.4 129 15-187 25-153 (313)
188 PF13173 AAA_14: AAA domain 98.6 1.2E-07 2.6E-12 72.3 5.9 72 16-101 2-73 (128)
189 PRK07993 DNA polymerase III su 98.6 5.5E-07 1.2E-11 79.8 10.5 131 15-187 23-168 (334)
190 COG2812 DnaX DNA polymerase II 98.6 5E-08 1.1E-12 90.1 3.9 160 16-230 38-212 (515)
191 PRK06964 DNA polymerase III su 98.5 3.7E-07 8E-12 80.9 9.1 135 14-187 19-192 (342)
192 TIGR02974 phageshock_pspF psp 98.5 8.9E-07 1.9E-11 78.4 11.5 88 15-130 21-119 (329)
193 TIGR02442 Cob-chelat-sub cobal 98.5 5.7E-08 1.2E-12 93.1 3.4 144 17-188 26-202 (633)
194 cd01120 RecA-like_NTPases RecA 98.5 1.2E-06 2.6E-11 68.6 9.6 80 19-105 2-101 (165)
195 PF13177 DNA_pol3_delta2: DNA 98.5 2.2E-07 4.7E-12 74.0 5.1 100 15-133 18-131 (162)
196 PRK07399 DNA polymerase III su 98.5 1.5E-06 3.2E-11 76.5 10.5 165 15-232 25-215 (314)
197 PRK08769 DNA polymerase III su 98.5 1.9E-06 4.1E-11 75.8 11.1 134 15-187 25-173 (319)
198 PHA00729 NTP-binding motif con 98.4 8E-07 1.7E-11 74.0 8.1 26 17-42 18-43 (226)
199 TIGR02237 recomb_radB DNA repa 98.4 2.8E-06 6E-11 70.2 11.0 87 11-104 7-112 (209)
200 PF01078 Mg_chelatase: Magnesi 98.4 4.8E-08 1E-12 80.0 0.5 26 16-41 22-47 (206)
201 PRK08058 DNA polymerase III su 98.4 7.9E-07 1.7E-11 78.8 7.9 98 15-133 27-139 (329)
202 PF05621 TniB: Bacterial TniB 98.4 1.6E-05 3.4E-10 68.8 15.2 88 15-104 60-160 (302)
203 KOG1051|consensus 98.4 1.4E-06 3E-11 84.9 9.5 90 14-131 589-687 (898)
204 PRK06090 DNA polymerase III su 98.4 2.9E-06 6.2E-11 74.6 10.7 131 15-187 24-168 (319)
205 PF01637 Arch_ATPase: Archaeal 98.4 7.1E-07 1.5E-11 74.2 6.2 26 16-41 20-45 (234)
206 PF12774 AAA_6: Hydrolytic ATP 98.4 1.6E-06 3.6E-11 72.8 8.4 68 15-103 31-98 (231)
207 smart00350 MCM minichromosome 98.4 7.5E-08 1.6E-12 90.1 0.1 25 17-41 237-261 (509)
208 PF00910 RNA_helicase: RNA hel 98.4 6.4E-07 1.4E-11 66.2 4.9 25 19-43 1-25 (107)
209 COG1221 PspF Transcriptional r 98.3 1E-06 2.3E-11 79.0 6.7 92 15-132 100-201 (403)
210 PRK06871 DNA polymerase III su 98.3 2.3E-06 5E-11 75.4 8.7 130 15-187 23-167 (325)
211 TIGR00368 Mg chelatase-related 98.3 5.2E-07 1.1E-11 83.9 4.8 25 16-40 211-235 (499)
212 PRK08699 DNA polymerase III su 98.3 7.3E-06 1.6E-10 72.4 11.4 134 14-187 19-173 (325)
213 PRK11608 pspF phage shock prot 98.3 1.2E-06 2.5E-11 77.7 6.2 77 15-104 28-115 (326)
214 PRK09361 radB DNA repair and r 98.3 1.2E-05 2.5E-10 67.3 11.6 86 11-104 18-122 (225)
215 PRK10820 DNA-binding transcrip 98.3 2.8E-06 6E-11 79.8 8.6 76 16-104 227-313 (520)
216 KOG1514|consensus 98.3 1.8E-06 3.9E-11 81.2 6.9 181 17-244 423-619 (767)
217 COG3829 RocR Transcriptional r 98.3 4.6E-07 9.9E-12 83.2 2.8 139 13-193 265-424 (560)
218 KOG1942|consensus 98.3 1.2E-06 2.5E-11 74.9 4.8 57 16-80 64-120 (456)
219 PRK06067 flagellar accessory p 98.2 5.7E-06 1.2E-10 69.7 8.9 85 11-102 20-133 (234)
220 cd01121 Sms Sms (bacterial rad 98.2 5.7E-06 1.2E-10 74.4 9.1 83 11-104 77-173 (372)
221 PF05729 NACHT: NACHT domain 98.2 5.8E-06 1.2E-10 65.0 8.2 88 17-104 1-96 (166)
222 PRK09376 rho transcription ter 98.2 7.9E-06 1.7E-10 73.2 9.7 84 19-107 172-274 (416)
223 TIGR02012 tigrfam_recA protein 98.2 1E-05 2.2E-10 71.1 10.1 115 11-132 50-178 (321)
224 PRK11823 DNA repair protein Ra 98.2 7.8E-06 1.7E-10 75.3 9.8 83 11-104 75-171 (446)
225 COG2204 AtoC Response regulato 98.2 2E-06 4.4E-11 78.6 5.8 95 14-130 162-261 (464)
226 TIGR01817 nifA Nif-specific re 98.2 1.6E-06 3.6E-11 81.7 5.4 77 15-104 218-305 (534)
227 TIGR00602 rad24 checkpoint pro 98.2 3.5E-06 7.6E-11 80.3 7.5 29 16-44 110-138 (637)
228 PF13207 AAA_17: AAA domain; P 98.2 1.6E-06 3.5E-11 65.0 4.2 24 19-42 2-25 (121)
229 COG0606 Predicted ATPase with 98.2 6E-06 1.3E-10 74.9 8.0 30 162-191 355-384 (490)
230 cd01123 Rad51_DMC1_radA Rad51_ 98.2 2.4E-05 5.2E-10 65.7 11.3 93 11-103 14-129 (235)
231 PRK08118 topology modulation p 98.2 3.9E-06 8.4E-11 67.1 6.1 27 17-43 2-28 (167)
232 COG2607 Predicted ATPase (AAA+ 98.2 5.8E-06 1.3E-10 68.8 7.2 67 15-100 84-150 (287)
233 cd01124 KaiC KaiC is a circadi 98.2 1E-05 2.2E-10 65.4 8.6 35 19-59 2-36 (187)
234 PRK15429 formate hydrogenlyase 98.2 4.6E-06 1E-10 81.0 7.5 83 15-104 398-485 (686)
235 PRK00131 aroK shikimate kinase 98.1 2.6E-06 5.7E-11 67.9 4.6 29 14-42 2-30 (175)
236 smart00763 AAA_PrkA PrkA AAA d 98.1 6.1E-06 1.3E-10 73.2 7.2 42 15-58 77-118 (361)
237 cd00983 recA RecA is a bacter 98.1 1.7E-05 3.6E-10 69.8 9.9 87 11-104 50-148 (325)
238 KOG2035|consensus 98.1 1.3E-05 2.9E-10 68.0 8.8 163 17-232 35-222 (351)
239 PRK05022 anaerobic nitric oxid 98.1 5.7E-06 1.2E-10 77.6 7.3 77 15-104 209-296 (509)
240 cd01128 rho_factor Transcripti 98.1 9.8E-06 2.1E-10 68.9 8.1 88 16-107 16-121 (249)
241 PF13191 AAA_16: AAA ATPase do 98.1 6.8E-06 1.5E-10 66.0 6.8 29 15-43 23-51 (185)
242 PF14532 Sigma54_activ_2: Sigm 98.1 1.3E-06 2.9E-11 67.5 2.5 65 15-104 20-84 (138)
243 PRK15424 propionate catabolism 98.1 2.3E-06 4.9E-11 80.3 4.4 94 15-130 241-348 (538)
244 PRK08533 flagellar accessory p 98.1 2.8E-05 6.2E-10 65.4 10.5 43 11-59 19-61 (230)
245 PF13671 AAA_33: AAA domain; P 98.1 8.5E-06 1.8E-10 62.8 6.8 23 19-41 2-24 (143)
246 COG3604 FhlA Transcriptional r 98.1 3.5E-06 7.6E-11 76.7 5.1 95 14-130 244-343 (550)
247 TIGR02688 conserved hypothetic 98.1 6.3E-06 1.4E-10 74.4 6.7 83 14-130 207-290 (449)
248 COG1239 ChlI Mg-chelatase subu 98.1 7.8E-06 1.7E-10 73.2 7.2 88 89-210 144-233 (423)
249 TIGR02329 propionate_PrpR prop 98.1 3E-06 6.4E-11 79.5 4.7 88 15-130 234-333 (526)
250 PRK14532 adenylate kinase; Pro 98.1 5E-06 1.1E-10 67.6 5.0 37 18-65 2-38 (188)
251 PRK09862 putative ATP-dependen 98.1 6.2E-06 1.3E-10 76.7 6.1 26 16-41 210-235 (506)
252 PRK06762 hypothetical protein; 98.1 9.4E-06 2E-10 64.5 6.4 26 16-41 2-27 (166)
253 cd01394 radB RadB. The archaea 98.1 3.3E-05 7.3E-10 64.2 9.9 43 11-59 14-56 (218)
254 KOG2227|consensus 98.1 1.8E-05 3.8E-10 71.6 8.4 172 15-240 174-366 (529)
255 PRK11388 DNA-binding transcrip 98.1 6.6E-06 1.4E-10 79.3 6.0 76 16-104 348-431 (638)
256 cd00227 CPT Chloramphenicol (C 98.0 9.3E-06 2E-10 65.3 6.0 27 16-42 2-28 (175)
257 PRK04296 thymidine kinase; Pro 98.0 1.4E-05 2.9E-10 65.3 7.0 76 17-101 3-90 (190)
258 PF12775 AAA_7: P-loop contain 98.0 1.1E-05 2.4E-10 69.6 6.6 27 15-41 32-58 (272)
259 COG0703 AroK Shikimate kinase 98.0 5.1E-06 1.1E-10 66.2 4.0 28 16-43 2-29 (172)
260 PRK09354 recA recombinase A; P 98.0 4.7E-05 1E-09 67.5 10.3 86 11-103 55-152 (349)
261 PF06745 KaiC: KaiC; InterPro 98.0 4E-05 8.7E-10 64.1 9.4 31 10-40 13-43 (226)
262 PRK13948 shikimate kinase; Pro 98.0 8.4E-06 1.8E-10 66.1 5.1 45 13-68 7-51 (182)
263 TIGR03877 thermo_KaiC_1 KaiC d 98.0 3E-05 6.5E-10 65.5 8.5 30 10-39 15-44 (237)
264 COG1618 Predicted nucleotide k 98.0 2.3E-05 5E-10 61.4 7.0 30 14-43 3-32 (179)
265 cd01393 recA_like RecA is a b 98.0 5.6E-05 1.2E-09 63.1 10.0 50 11-60 14-63 (226)
266 PRK07261 topology modulation p 98.0 1.8E-05 3.9E-10 63.5 6.6 25 18-42 2-26 (171)
267 KOG3347|consensus 98.0 5.3E-06 1.1E-10 64.1 3.0 27 16-42 7-33 (176)
268 PRK14531 adenylate kinase; Pro 98.0 7.9E-06 1.7E-10 66.2 4.0 37 16-63 2-38 (183)
269 PHA02624 large T antigen; Prov 98.0 1.5E-05 3.3E-10 74.7 6.3 30 13-42 428-457 (647)
270 cd01131 PilT Pilus retraction 98.0 1.9E-05 4.1E-10 64.9 6.2 25 18-42 3-27 (198)
271 cd03281 ABC_MSH5_euk MutS5 hom 97.9 5.4E-05 1.2E-09 62.9 8.8 22 17-38 30-51 (213)
272 TIGR01359 UMP_CMP_kin_fam UMP- 97.9 8.2E-06 1.8E-10 65.9 3.8 36 19-65 2-37 (183)
273 TIGR00767 rho transcription te 97.9 5.7E-05 1.2E-09 68.0 9.3 88 16-107 168-273 (415)
274 PRK03839 putative kinase; Prov 97.9 1.6E-05 3.4E-10 64.2 5.3 25 18-42 2-26 (180)
275 cd00464 SK Shikimate kinase (S 97.9 1.5E-05 3.3E-10 62.2 4.8 25 18-42 1-25 (154)
276 COG1220 HslU ATP-dependent pro 97.9 1.8E-05 4E-10 68.9 5.6 60 15-83 49-110 (444)
277 PRK00625 shikimate kinase; Pro 97.9 1.6E-05 3.5E-10 63.9 4.9 25 18-42 2-26 (173)
278 PRK13949 shikimate kinase; Pro 97.9 1.4E-05 3E-10 64.1 4.4 26 17-42 2-27 (169)
279 COG1102 Cmk Cytidylate kinase 97.9 8.7E-06 1.9E-10 63.8 3.1 26 18-43 2-27 (179)
280 KOG1968|consensus 97.9 7.3E-06 1.6E-10 80.3 3.3 165 18-237 359-530 (871)
281 PRK13947 shikimate kinase; Pro 97.9 1.5E-05 3.2E-10 63.7 4.5 25 18-42 3-27 (171)
282 KOG1970|consensus 97.9 7.2E-05 1.6E-09 69.0 9.3 29 16-44 110-138 (634)
283 PF06309 Torsin: Torsin; Inte 97.9 7.3E-05 1.6E-09 56.5 7.8 25 16-40 53-77 (127)
284 PRK04040 adenylate kinase; Pro 97.9 3.2E-05 7E-10 63.0 6.4 25 16-40 2-26 (188)
285 PRK05818 DNA polymerase III su 97.9 0.00014 3.1E-09 61.8 10.4 132 12-186 3-147 (261)
286 cd03283 ABC_MutS-like MutS-lik 97.9 9.5E-05 2.1E-09 60.8 9.0 25 16-40 25-49 (199)
287 COG0563 Adk Adenylate kinase a 97.9 1.7E-05 3.7E-10 64.0 4.5 36 18-64 2-37 (178)
288 cd00046 DEXDc DEAD-like helica 97.9 3E-05 6.4E-10 58.4 5.6 26 17-42 1-26 (144)
289 TIGR03881 KaiC_arch_4 KaiC dom 97.9 7.5E-05 1.6E-09 62.6 8.5 30 11-40 15-44 (229)
290 PLN02200 adenylate kinase fami 97.9 2.5E-05 5.3E-10 65.9 5.5 39 15-64 42-80 (234)
291 PF09848 DUF2075: Uncharacteri 97.9 3.2E-05 7E-10 69.2 6.6 83 17-104 2-98 (352)
292 cd02027 APSK Adenosine 5'-phos 97.9 7.5E-05 1.6E-09 58.5 7.8 23 19-41 2-24 (149)
293 TIGR03574 selen_PSTK L-seryl-t 97.9 8.1E-05 1.7E-09 63.3 8.6 37 19-61 2-38 (249)
294 COG3854 SpoIIIAA ncharacterize 97.9 5.2E-05 1.1E-09 63.0 7.0 27 17-43 138-164 (308)
295 PRK14530 adenylate kinase; Pro 97.9 2.5E-05 5.3E-10 65.0 5.2 26 17-42 4-29 (215)
296 cd01428 ADK Adenylate kinase ( 97.8 2.6E-05 5.7E-10 63.3 5.3 35 19-64 2-36 (194)
297 PRK04328 hypothetical protein; 97.8 8.1E-05 1.8E-09 63.4 8.4 29 11-39 18-46 (249)
298 PRK13406 bchD magnesium chelat 97.8 3E-05 6.6E-10 73.5 6.2 141 17-190 26-173 (584)
299 cd02021 GntK Gluconate kinase 97.8 7.5E-05 1.6E-09 58.2 7.6 24 19-42 2-25 (150)
300 PRK12608 transcription termina 97.8 8.2E-05 1.8E-09 66.5 8.4 108 18-130 135-265 (380)
301 PF01583 APS_kinase: Adenylyls 97.8 9.9E-05 2.1E-09 58.2 7.9 72 16-96 2-80 (156)
302 TIGR00416 sms DNA repair prote 97.8 5.8E-05 1.3E-09 69.7 7.6 82 11-103 89-184 (454)
303 COG4088 Predicted nucleotide k 97.8 7.6E-05 1.6E-09 60.9 7.2 83 18-106 3-90 (261)
304 TIGR03878 thermo_KaiC_2 KaiC d 97.8 9.7E-05 2.1E-09 63.3 8.4 31 10-40 30-60 (259)
305 PF08433 KTI12: Chromatin asso 97.8 9.4E-05 2E-09 63.7 8.3 80 18-105 3-86 (270)
306 PF00931 NB-ARC: NB-ARC domain 97.8 4.3E-05 9.3E-10 66.0 6.0 84 15-102 18-114 (287)
307 PF03969 AFG1_ATPase: AFG1-lik 97.8 4.7E-05 1E-09 68.2 6.4 30 13-42 59-88 (362)
308 PTZ00088 adenylate kinase 1; P 97.8 4.4E-05 9.4E-10 64.2 5.7 38 16-64 6-43 (229)
309 PRK12723 flagellar biosynthesi 97.8 8.2E-05 1.8E-09 67.2 7.6 44 15-58 173-216 (388)
310 PHA02530 pseT polynucleotide k 97.8 8.9E-05 1.9E-09 64.6 7.6 25 16-40 2-26 (300)
311 PRK14528 adenylate kinase; Pro 97.8 6E-05 1.3E-09 61.3 6.0 26 17-42 2-27 (186)
312 PLN03187 meiotic recombination 97.8 0.00022 4.8E-09 63.4 9.9 50 11-60 121-170 (344)
313 PRK09519 recA DNA recombinatio 97.7 0.00024 5.3E-09 69.1 10.8 86 11-103 55-152 (790)
314 TIGR01360 aden_kin_iso1 adenyl 97.7 3.7E-05 8E-10 62.1 4.6 26 17-42 4-29 (188)
315 cd02020 CMPK Cytidine monophos 97.7 6.7E-05 1.5E-09 57.9 5.8 24 19-42 2-25 (147)
316 TIGR01420 pilT_fam pilus retra 97.7 6.4E-05 1.4E-09 67.1 6.4 27 15-41 121-147 (343)
317 PF13604 AAA_30: AAA domain; P 97.7 0.00016 3.4E-09 59.3 8.2 38 16-59 18-55 (196)
318 PRK05917 DNA polymerase III su 97.7 8.6E-05 1.9E-09 64.3 6.8 100 15-133 18-124 (290)
319 PRK00279 adk adenylate kinase; 97.7 5.9E-05 1.3E-09 62.7 5.7 36 18-64 2-37 (215)
320 PF00406 ADK: Adenylate kinase 97.7 4.5E-05 9.8E-10 59.7 4.7 35 21-66 1-35 (151)
321 PF13238 AAA_18: AAA domain; P 97.7 3E-05 6.6E-10 58.3 3.6 22 19-40 1-22 (129)
322 TIGR03880 KaiC_arch_3 KaiC dom 97.7 0.00049 1.1E-08 57.4 11.1 30 11-40 11-40 (224)
323 cd03282 ABC_MSH4_euk MutS4 hom 97.7 0.00025 5.5E-09 58.5 9.1 24 16-39 29-52 (204)
324 PRK00889 adenylylsulfate kinas 97.7 0.00023 5E-09 57.0 8.6 40 16-61 4-43 (175)
325 PF03215 Rad17: Rad17 cell cyc 97.7 3.6E-05 7.8E-10 72.0 4.4 29 16-44 45-73 (519)
326 PRK04301 radA DNA repair and r 97.7 0.00026 5.5E-09 62.5 9.5 94 11-104 97-213 (317)
327 PRK14722 flhF flagellar biosyn 97.7 0.00012 2.6E-09 65.7 7.4 29 13-41 134-162 (374)
328 PF13479 AAA_24: AAA domain 97.7 9.5E-05 2.1E-09 61.5 6.3 69 16-101 3-80 (213)
329 TIGR01313 therm_gnt_kin carboh 97.7 3.4E-05 7.3E-10 61.1 3.4 24 19-42 1-24 (163)
330 PLN02674 adenylate kinase 97.7 6E-05 1.3E-09 63.8 5.0 40 15-65 30-69 (244)
331 KOG2170|consensus 97.7 0.00017 3.6E-09 62.1 7.6 25 16-40 110-134 (344)
332 PRK13764 ATPase; Provisional 97.7 0.00012 2.6E-09 69.4 7.4 29 14-42 255-283 (602)
333 TIGR02238 recomb_DMC1 meiotic 97.7 0.00046 1E-08 60.7 10.6 93 11-104 91-206 (313)
334 cd03243 ABC_MutS_homologs The 97.7 0.00066 1.4E-08 55.8 11.0 23 16-38 29-51 (202)
335 PRK10923 glnG nitrogen regulat 97.7 5.4E-05 1.2E-09 70.2 5.0 77 15-104 160-247 (469)
336 TIGR02236 recomb_radA DNA repa 97.7 0.00021 4.6E-09 62.8 8.5 50 11-60 90-139 (310)
337 PTZ00111 DNA replication licen 97.7 3.1E-05 6.8E-10 75.8 3.4 25 16-40 492-516 (915)
338 cd01122 GP4d_helicase GP4d_hel 97.7 0.00052 1.1E-08 58.9 10.6 31 11-41 25-55 (271)
339 PRK06217 hypothetical protein; 97.7 4.5E-05 9.7E-10 61.8 3.8 26 17-42 2-27 (183)
340 PF13245 AAA_19: Part of AAA d 97.7 6.1E-05 1.3E-09 52.1 3.8 25 16-40 10-35 (76)
341 TIGR01351 adk adenylate kinase 97.6 6.5E-05 1.4E-09 62.2 4.7 35 19-64 2-36 (210)
342 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.00045 9.7E-09 56.8 9.7 22 17-38 29-50 (200)
343 PF13521 AAA_28: AAA domain; P 97.6 8.1E-05 1.8E-09 59.0 5.0 23 19-42 2-24 (163)
344 PRK11361 acetoacetate metaboli 97.6 6.5E-05 1.4E-09 69.3 5.1 87 16-130 166-263 (457)
345 TIGR02915 PEP_resp_reg putativ 97.6 6.2E-05 1.4E-09 69.3 5.0 77 15-104 161-248 (445)
346 TIGR00764 lon_rel lon-related 97.6 9.1E-05 2E-09 70.8 6.0 62 16-81 37-103 (608)
347 TIGR00150 HI0065_YjeE ATPase, 97.6 5.8E-05 1.2E-09 57.9 3.8 29 14-42 20-48 (133)
348 PRK05541 adenylylsulfate kinas 97.6 9.2E-05 2E-09 59.4 5.2 29 14-42 5-33 (176)
349 PRK03731 aroL shikimate kinase 97.6 0.00018 4E-09 57.3 6.8 26 17-42 3-28 (171)
350 cd00984 DnaB_C DnaB helicase C 97.6 0.00027 5.9E-09 59.5 8.2 42 12-58 9-50 (242)
351 COG4650 RtcR Sigma54-dependent 97.6 0.0002 4.3E-09 61.6 7.3 80 16-104 208-297 (531)
352 PRK15115 response regulator Gl 97.6 7.3E-05 1.6E-09 68.8 5.1 77 16-104 157-243 (444)
353 PRK02496 adk adenylate kinase; 97.6 7.6E-05 1.6E-09 60.4 4.6 25 18-42 3-27 (184)
354 PRK14527 adenylate kinase; Pro 97.6 5.9E-05 1.3E-09 61.5 3.9 28 15-42 5-32 (191)
355 PTZ00035 Rad51 protein; Provis 97.6 0.00064 1.4E-08 60.5 10.7 50 11-60 113-162 (337)
356 PRK06547 hypothetical protein; 97.6 6.2E-05 1.3E-09 60.5 3.9 28 15-42 14-41 (172)
357 KOG2228|consensus 97.6 0.00021 4.6E-09 62.4 7.2 138 14-187 47-206 (408)
358 PRK08233 hypothetical protein; 97.6 0.00029 6.2E-09 56.5 7.7 26 16-41 3-28 (182)
359 PRK05057 aroK shikimate kinase 97.6 6.6E-05 1.4E-09 60.3 3.9 27 16-42 4-30 (172)
360 TIGR02525 plasmid_TraJ plasmid 97.6 0.00015 3.3E-09 65.1 6.3 27 15-41 148-174 (372)
361 PF14516 AAA_35: AAA-like doma 97.6 0.00063 1.4E-08 60.4 10.2 43 13-61 28-70 (331)
362 cd02019 NK Nucleoside/nucleoti 97.6 7.9E-05 1.7E-09 50.4 3.5 22 19-40 2-23 (69)
363 PLN03186 DNA repair protein RA 97.6 0.0005 1.1E-08 61.1 9.5 93 11-104 118-233 (342)
364 cd01130 VirB11-like_ATPase Typ 97.6 0.00016 3.4E-09 58.8 5.8 28 14-41 23-50 (186)
365 PRK13946 shikimate kinase; Pro 97.6 0.0001 2.2E-09 59.8 4.6 27 16-42 10-36 (184)
366 smart00534 MUTSac ATPase domai 97.6 0.00048 1E-08 55.9 8.5 20 19-38 2-21 (185)
367 TIGR02655 circ_KaiC circadian 97.6 0.00036 7.8E-09 65.1 8.8 45 11-61 258-302 (484)
368 PRK13900 type IV secretion sys 97.6 0.0001 2.2E-09 65.4 4.9 74 15-100 159-246 (332)
369 PF07693 KAP_NTPase: KAP famil 97.6 0.0024 5.3E-08 56.1 13.6 30 14-43 18-47 (325)
370 PRK00771 signal recognition pa 97.5 0.00034 7.3E-09 64.2 8.3 28 15-42 94-121 (437)
371 PHA02774 E1; Provisional 97.5 0.00016 3.6E-09 67.7 6.2 28 14-41 432-459 (613)
372 TIGR00455 apsK adenylylsulfate 97.5 0.00041 8.9E-09 56.1 8.0 43 14-62 16-58 (184)
373 TIGR03499 FlhF flagellar biosy 97.5 0.00033 7.2E-09 60.7 7.7 28 15-42 193-220 (282)
374 cd03284 ABC_MutS1 MutS1 homolo 97.5 0.00062 1.3E-08 56.7 9.0 22 17-38 31-52 (216)
375 COG1936 Predicted nucleotide k 97.5 6.5E-05 1.4E-09 59.6 2.9 24 18-42 2-25 (180)
376 PRK14526 adenylate kinase; Pro 97.5 0.00015 3.2E-09 60.2 5.2 25 18-42 2-26 (211)
377 PLN02459 probable adenylate ki 97.5 0.00017 3.8E-09 61.5 5.6 38 16-64 29-66 (261)
378 PRK05800 cobU adenosylcobinami 97.5 0.00078 1.7E-08 54.0 9.0 25 18-42 3-27 (170)
379 TIGR02782 TrbB_P P-type conjug 97.5 7.5E-05 1.6E-09 65.3 3.3 27 15-41 131-157 (299)
380 PF13086 AAA_11: AAA domain; P 97.5 8.6E-05 1.9E-09 61.5 3.6 23 18-40 19-41 (236)
381 PF00437 T2SE: Type II/IV secr 97.5 9.9E-05 2.1E-09 63.5 4.0 74 16-100 127-208 (270)
382 cd03287 ABC_MSH3_euk MutS3 hom 97.5 0.0013 2.8E-08 55.1 10.6 23 16-38 31-53 (222)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00029 6.4E-09 54.8 6.3 28 14-41 24-51 (144)
384 PRK14529 adenylate kinase; Pro 97.5 0.00014 3.1E-09 60.8 4.8 25 18-42 2-26 (223)
385 PRK13833 conjugal transfer pro 97.5 0.00016 3.6E-09 63.7 5.4 76 15-99 143-225 (323)
386 PF13481 AAA_25: AAA domain; P 97.5 0.0012 2.7E-08 53.4 10.3 51 11-61 27-81 (193)
387 cd01129 PulE-GspE PulE/GspE Th 97.5 0.00023 5.1E-09 61.1 6.2 73 17-100 81-160 (264)
388 COG0529 CysC Adenylylsulfate k 97.5 0.00057 1.2E-08 54.5 7.8 62 16-83 23-91 (197)
389 PRK09302 circadian clock prote 97.5 0.00088 1.9E-08 62.9 10.4 30 11-40 26-55 (509)
390 PRK13894 conjugal transfer ATP 97.5 0.00021 4.6E-09 63.0 5.7 78 14-100 146-230 (319)
391 TIGR02239 recomb_RAD51 DNA rep 97.5 0.00073 1.6E-08 59.6 9.0 50 11-60 91-140 (316)
392 PRK06696 uridine kinase; Valid 97.5 0.00022 4.7E-09 59.7 5.5 42 15-62 21-62 (223)
393 PRK10365 transcriptional regul 97.5 0.00029 6.3E-09 64.7 6.7 78 15-104 161-248 (441)
394 TIGR02858 spore_III_AA stage I 97.5 0.00027 5.9E-09 60.8 6.1 25 17-41 112-136 (270)
395 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00038 8.2E-09 56.2 6.3 77 14-101 23-101 (177)
396 COG0467 RAD55 RecA-superfamily 97.4 0.00026 5.7E-09 60.5 5.6 45 11-61 18-62 (260)
397 PRK04182 cytidylate kinase; Pr 97.4 0.0001 2.2E-09 59.0 2.9 25 18-42 2-26 (180)
398 cd00544 CobU Adenosylcobinamid 97.4 0.0015 3.2E-08 52.3 9.4 23 19-41 2-24 (169)
399 PRK05973 replicative DNA helic 97.4 0.00031 6.7E-09 59.2 5.7 30 11-40 59-88 (237)
400 PRK12339 2-phosphoglycerate ki 97.4 0.00014 3E-09 59.8 3.5 27 16-42 3-29 (197)
401 PF08423 Rad51: Rad51; InterP 97.4 0.0027 5.9E-08 54.3 11.6 120 11-133 33-175 (256)
402 cd03216 ABC_Carb_Monos_I This 97.4 0.00051 1.1E-08 54.5 6.3 28 13-40 23-50 (163)
403 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00046 9.9E-09 54.3 6.0 28 14-41 23-50 (157)
404 PRK13851 type IV secretion sys 97.4 0.00017 3.8E-09 64.1 3.8 75 14-100 160-247 (344)
405 PRK14974 cell division protein 97.4 0.00092 2E-08 59.3 8.3 27 16-42 140-166 (336)
406 TIGR02788 VirB11 P-type DNA tr 97.3 0.00029 6.4E-09 61.9 5.1 27 15-41 143-169 (308)
407 PRK13808 adenylate kinase; Pro 97.3 0.00049 1.1E-08 60.8 6.4 36 18-64 2-37 (333)
408 KOG2680|consensus 97.3 0.00013 2.8E-09 62.8 2.6 51 16-73 66-116 (454)
409 PF06414 Zeta_toxin: Zeta toxi 97.3 0.00082 1.8E-08 55.1 7.4 44 14-65 13-56 (199)
410 COG2805 PilT Tfp pilus assembl 97.3 0.00063 1.4E-08 58.7 6.7 78 12-101 120-210 (353)
411 PF00448 SRP54: SRP54-type pro 97.3 0.00022 4.8E-09 58.5 3.8 28 16-43 1-28 (196)
412 PLN02199 shikimate kinase 97.3 0.00023 5E-09 61.6 4.0 27 16-42 102-128 (303)
413 PF05970 PIF1: PIF1-like helic 97.3 0.00052 1.1E-08 61.7 6.5 28 15-42 21-48 (364)
414 PRK03846 adenylylsulfate kinas 97.3 0.0013 2.9E-08 53.8 8.4 41 15-61 23-63 (198)
415 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0018 3.9E-08 51.2 8.7 82 18-104 4-110 (159)
416 cd03238 ABC_UvrA The excision 97.3 0.001 2.2E-08 53.6 7.4 25 14-38 19-43 (176)
417 TIGR01818 ntrC nitrogen regula 97.3 0.00015 3.2E-09 67.1 2.8 77 15-104 156-243 (463)
418 TIGR02768 TraA_Ti Ti-type conj 97.3 0.00029 6.2E-09 69.0 4.9 80 16-101 368-451 (744)
419 PRK08154 anaerobic benzoate ca 97.3 0.00033 7.2E-09 61.6 4.9 30 13-42 130-159 (309)
420 COG1066 Sms Predicted ATP-depe 97.3 0.00068 1.5E-08 60.8 6.8 82 12-105 89-184 (456)
421 PRK12338 hypothetical protein; 97.3 0.00022 4.8E-09 62.5 3.7 27 16-42 4-30 (319)
422 PRK11889 flhF flagellar biosyn 97.3 0.0013 2.8E-08 59.4 8.5 27 15-41 240-266 (436)
423 PF00154 RecA: recA bacterial 97.3 0.0051 1.1E-07 54.2 12.1 116 11-133 48-177 (322)
424 TIGR02322 phosphon_PhnN phosph 97.3 0.00024 5.3E-09 57.0 3.5 25 17-41 2-26 (179)
425 PRK01184 hypothetical protein; 97.3 0.00022 4.8E-09 57.6 3.3 25 17-42 2-26 (184)
426 PF02367 UPF0079: Uncharacteri 97.3 0.00026 5.7E-09 53.5 3.4 31 13-43 12-42 (123)
427 COG5192 BMS1 GTP-binding prote 97.3 0.0012 2.6E-08 61.3 8.0 32 13-44 66-97 (1077)
428 cd03227 ABC_Class2 ABC-type Cl 97.2 0.0027 5.9E-08 50.3 9.2 28 16-43 21-48 (162)
429 PF03266 NTPase_1: NTPase; In 97.2 0.00031 6.7E-09 56.2 3.7 24 18-41 1-24 (168)
430 cd03223 ABCD_peroxisomal_ALDP 97.2 0.00096 2.1E-08 53.1 6.5 28 14-41 25-52 (166)
431 PRK05986 cob(I)alamin adenolsy 97.2 0.0021 4.6E-08 52.2 8.4 84 16-104 22-130 (191)
432 PF08303 tRNA_lig_kinase: tRNA 97.2 0.0008 1.7E-08 53.1 5.7 68 20-106 3-71 (168)
433 TIGR01448 recD_rel helicase, p 97.2 0.00071 1.5E-08 66.1 6.6 82 16-101 338-428 (720)
434 COG0645 Predicted kinase [Gene 97.2 0.0012 2.6E-08 52.3 6.7 26 17-42 2-27 (170)
435 PRK07132 DNA polymerase III su 97.2 0.0014 3.1E-08 57.2 7.9 99 15-133 17-119 (299)
436 cd02022 DPCK Dephospho-coenzym 97.2 0.00046 1E-08 55.7 4.5 36 19-66 2-37 (179)
437 PRK05537 bifunctional sulfate 97.2 0.0012 2.5E-08 62.8 7.8 43 16-63 392-434 (568)
438 PF01745 IPT: Isopentenyl tran 97.2 0.00076 1.6E-08 55.5 5.6 39 18-65 3-41 (233)
439 PRK05480 uridine/cytidine kina 97.2 0.00061 1.3E-08 56.2 5.3 27 15-41 5-31 (209)
440 TIGR00064 ftsY signal recognit 97.2 0.0017 3.7E-08 56.0 8.2 28 15-42 71-98 (272)
441 PF00488 MutS_V: MutS domain V 97.2 0.0025 5.5E-08 53.8 9.0 24 17-40 44-67 (235)
442 PRK10867 signal recognition pa 97.2 0.0012 2.7E-08 60.4 7.5 40 15-59 99-138 (433)
443 TIGR02173 cyt_kin_arch cytidyl 97.2 0.00025 5.5E-09 56.2 2.7 25 18-42 2-26 (171)
444 PF01443 Viral_helicase1: Vira 97.2 0.00012 2.5E-09 61.3 0.7 22 19-40 1-22 (234)
445 PRK10078 ribose 1,5-bisphospho 97.2 0.00028 6E-09 57.3 2.9 25 17-41 3-27 (186)
446 cd03286 ABC_MSH6_euk MutS6 hom 97.2 0.0038 8.2E-08 52.1 9.7 24 16-39 30-53 (218)
447 PRK15455 PrkA family serine pr 97.2 0.00033 7.1E-09 65.8 3.6 28 15-42 102-129 (644)
448 PRK09302 circadian clock prote 97.2 0.0036 7.7E-08 58.9 10.5 86 11-103 268-377 (509)
449 cd02028 UMPK_like Uridine mono 97.2 0.00063 1.4E-08 55.0 4.7 24 19-42 2-25 (179)
450 cd03214 ABC_Iron-Siderophores_ 97.1 0.0015 3.2E-08 52.7 6.8 27 14-40 23-49 (180)
451 COG2874 FlaH Predicted ATPases 97.1 0.0039 8.5E-08 51.3 9.2 87 11-104 23-138 (235)
452 COG3267 ExeA Type II secretory 97.1 0.015 3.3E-07 49.2 12.9 81 18-104 53-146 (269)
453 cd03115 SRP The signal recogni 97.1 0.00074 1.6E-08 53.9 5.1 36 18-59 2-37 (173)
454 PF00625 Guanylate_kin: Guanyl 97.1 0.0013 2.9E-08 53.1 6.6 26 16-41 2-27 (183)
455 PRK13975 thymidylate kinase; P 97.1 0.00044 9.5E-09 56.3 3.8 27 16-42 2-28 (196)
456 PF00485 PRK: Phosphoribulokin 97.1 0.00041 8.9E-09 56.7 3.6 24 19-42 2-25 (194)
457 TIGR02524 dot_icm_DotB Dot/Icm 97.1 0.00072 1.6E-08 60.6 5.3 27 15-41 133-159 (358)
458 PLN03210 Resistant to P. syrin 97.1 0.0031 6.7E-08 65.0 10.5 28 16-43 207-234 (1153)
459 PRK00300 gmk guanylate kinase; 97.1 0.00043 9.3E-09 56.8 3.5 27 15-41 4-30 (205)
460 COG4608 AppF ABC-type oligopep 97.1 0.0031 6.8E-08 53.7 8.6 28 14-41 37-64 (268)
461 PRK14730 coaE dephospho-CoA ki 97.1 0.00091 2E-08 54.8 5.2 38 18-66 3-40 (195)
462 COG0194 Gmk Guanylate kinase [ 97.1 0.0015 3.2E-08 52.6 6.2 27 16-42 4-30 (191)
463 TIGR00235 udk uridine kinase. 97.1 0.00049 1.1E-08 56.8 3.6 26 16-41 6-31 (207)
464 KOG3354|consensus 97.1 0.00054 1.2E-08 53.5 3.5 32 12-43 8-39 (191)
465 cd01125 repA Hexameric Replica 97.1 0.0037 8E-08 52.8 9.0 42 19-60 4-51 (239)
466 PRK05506 bifunctional sulfate 97.1 0.0019 4E-08 62.4 8.0 74 15-97 459-539 (632)
467 TIGR02655 circ_KaiC circadian 97.1 0.00051 1.1E-08 64.1 4.0 30 10-39 15-44 (484)
468 PRK05703 flhF flagellar biosyn 97.1 0.0019 4.1E-08 59.3 7.5 27 15-41 220-246 (424)
469 TIGR01526 nadR_NMN_Atrans nico 97.1 0.0018 4E-08 57.3 7.1 27 16-42 162-188 (325)
470 KOG2543|consensus 97.0 0.0024 5.2E-08 56.8 7.5 37 15-60 29-65 (438)
471 PRK04220 2-phosphoglycerate ki 97.0 0.0006 1.3E-08 59.3 3.8 28 15-42 91-118 (301)
472 TIGR01663 PNK-3'Pase polynucle 97.0 0.0015 3.3E-08 61.3 6.7 27 15-41 368-394 (526)
473 PRK12726 flagellar biosynthesi 97.0 0.0037 7.9E-08 56.2 8.7 28 14-41 204-231 (407)
474 PRK12678 transcription termina 97.0 0.004 8.6E-08 58.6 9.1 91 12-107 410-521 (672)
475 PRK14738 gmk guanylate kinase; 97.0 0.00057 1.2E-08 56.4 3.4 25 15-39 12-36 (206)
476 PF01580 FtsK_SpoIIIE: FtsK/Sp 97.0 0.012 2.7E-07 48.2 11.3 41 17-59 39-79 (205)
477 PRK14737 gmk guanylate kinase; 97.0 0.00058 1.3E-08 55.5 3.3 26 15-40 3-28 (186)
478 PF13555 AAA_29: P-loop contai 97.0 0.00093 2E-08 44.1 3.6 23 18-40 25-47 (62)
479 PRK14021 bifunctional shikimat 97.0 0.00083 1.8E-08 63.5 4.8 27 16-42 6-32 (542)
480 COG5271 MDN1 AAA ATPase contai 97.0 0.00085 1.8E-08 69.2 4.9 138 16-187 1543-1691(4600)
481 PRK09825 idnK D-gluconate kina 97.0 0.00071 1.5E-08 54.5 3.7 26 16-41 3-28 (176)
482 PRK00081 coaE dephospho-CoA ki 97.0 0.0013 2.7E-08 53.9 5.2 38 17-66 3-40 (194)
483 PRK12727 flagellar biosynthesi 97.0 0.003 6.5E-08 59.0 8.1 29 13-41 347-375 (559)
484 PRK07667 uridine kinase; Provi 97.0 0.0013 2.7E-08 53.8 5.1 26 17-42 18-43 (193)
485 TIGR00708 cobA cob(I)alamin ad 97.0 0.0054 1.2E-07 49.1 8.6 82 18-104 7-112 (173)
486 PLN02165 adenylate isopentenyl 97.0 0.00069 1.5E-08 59.7 3.7 27 16-42 43-69 (334)
487 cd02023 UMPK Uridine monophosp 97.0 0.00068 1.5E-08 55.4 3.4 22 19-40 2-23 (198)
488 PRK00091 miaA tRNA delta(2)-is 97.0 0.00079 1.7E-08 59.0 4.0 27 16-42 4-30 (307)
489 TIGR03263 guanyl_kin guanylate 97.0 0.00064 1.4E-08 54.6 3.2 25 17-41 2-26 (180)
490 TIGR00959 ffh signal recogniti 97.0 0.0034 7.4E-08 57.5 8.2 40 15-59 98-137 (428)
491 PRK12724 flagellar biosynthesi 97.0 0.0033 7E-08 57.3 7.9 26 16-41 223-248 (432)
492 PF12780 AAA_8: P-loop contain 96.9 0.0031 6.7E-08 54.3 7.3 67 16-99 31-99 (268)
493 TIGR02533 type_II_gspE general 96.9 0.0017 3.7E-08 60.5 6.1 28 14-41 239-267 (486)
494 TIGR00750 lao LAO/AO transport 96.9 0.0041 8.8E-08 54.4 8.0 28 15-42 33-60 (300)
495 PLN02840 tRNA dimethylallyltra 96.9 0.0038 8.2E-08 56.8 7.9 27 16-42 21-47 (421)
496 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00088 1.9E-08 49.3 3.1 22 16-37 15-36 (107)
497 PRK13889 conjugal transfer rel 96.9 0.0021 4.5E-08 64.5 6.5 80 16-101 362-445 (988)
498 PRK06761 hypothetical protein; 96.9 0.00089 1.9E-08 57.9 3.5 27 16-42 3-29 (282)
499 COG1855 ATPase (PilT family) [ 96.9 0.00059 1.3E-08 61.8 2.4 31 12-42 259-289 (604)
500 cd00071 GMPK Guanosine monopho 96.9 0.00088 1.9E-08 51.7 3.0 23 19-41 2-24 (137)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=285.57 Aligned_cols=183 Identities=26% Similarity=0.384 Sum_probs=163.1
Q ss_pred CcccccccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH
Q psy3997 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE 82 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~ 82 (256)
|++.||++ |+|||||||||||||++|+|+|+++ ++.|+.+.+|++..+|+|++.+.++++|..|++
T Consensus 177 F~~~GI~P-----PKGVLLYGPPGTGKTLLAkAVA~~T---------~AtFIrvvgSElVqKYiGEGaRlVRelF~lAre 242 (406)
T COG1222 177 FEELGIDP-----PKGVLLYGPPGTGKTLLAKAVANQT---------DATFIRVVGSELVQKYIGEGARLVRELFELARE 242 (406)
T ss_pred HHHcCCCC-----CCceEeeCCCCCcHHHHHHHHHhcc---------CceEEEeccHHHHHHHhccchHHHHHHHHHHhh
Confidence 45555555 9999999999999999999999997 569999999999999999999999999999997
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
. .|+||||||||++..+|....++. +.+..|+.-+||++|||++... ++ ..+.+
T Consensus 243 k-----aPsIIFiDEIDAIg~kR~d~~t~g-DrEVQRTmleLL~qlDGFD~~~---------nv-----------KVI~A 296 (406)
T COG1222 243 K-----APSIIFIDEIDAIGAKRFDSGTSG-DREVQRTMLELLNQLDGFDPRG---------NV-----------KVIMA 296 (406)
T ss_pred c-----CCeEEEEechhhhhcccccCCCCc-hHHHHHHHHHHHHhccCCCCCC---------Ce-----------EEEEe
Confidence 5 999999999999999998776554 4667889999999999998644 22 24558
Q ss_pred HHHHHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCc
Q psy3997 163 ENFLIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDST 240 (256)
Q Consensus 163 t~~~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~ 240 (256)
||.++.||+|+.| ||+.+|+||+|+ ++.|.+|++.+.+.+... .+-+|+.|+++|+|
T Consensus 297 TNR~D~LDPALLRPGR~DRkIEfplPd----------~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g---------- 355 (406)
T COG1222 297 TNRPDILDPALLRPGRFDRKIEFPLPD----------EEGRAEILKIHTRKMNLA-DDVDLELLARLTEG---------- 355 (406)
T ss_pred cCCccccChhhcCCCcccceeecCCCC----------HHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCC----------
Confidence 8999999999998 999999999999 999999999999888776 77999999999999
Q ss_pred cccccccc
Q psy3997 241 LNFSFSSL 248 (256)
Q Consensus 241 ~~~~~~~~ 248 (256)
|||-||
T Consensus 356 --~sGAdl 361 (406)
T COG1222 356 --FSGADL 361 (406)
T ss_pred --CchHHH
Confidence 999988
No 2
>KOG0739|consensus
Probab=100.00 E-value=2.3e-38 Score=265.37 Aligned_cols=177 Identities=29% Similarity=0.478 Sum_probs=160.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
|=+||||||||||||+.||+++|-+.+ ..||.|+.++++++|.|++++.++.+|+.|++. .|+|||
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAn---------STFFSvSSSDLvSKWmGESEkLVknLFemARe~-----kPSIIF 230 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEAN---------STFFSVSSSDLVSKWMGESEKLVKNLFEMAREN-----KPSIIF 230 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcC---------CceEEeehHHHHHHHhccHHHHHHHHHHHHHhc-----CCcEEE
Confidence 358999999999999999999999974 589999999999999999999999999999965 999999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||||.++..|. ++++...+||..+||.+|+++-..+.|. .+ +.+||.||.||.||+
T Consensus 231 iDEiDslcg~r~----enEseasRRIKTEfLVQMqGVG~d~~gv--------LV-----------LgATNiPw~LDsAIR 287 (439)
T KOG0739|consen 231 IDEIDSLCGSRS----ENESEASRRIKTEFLVQMQGVGNDNDGV--------LV-----------LGATNIPWVLDSAIR 287 (439)
T ss_pred eehhhhhccCCC----CCchHHHHHHHHHHHHhhhccccCCCce--------EE-----------EecCCCchhHHHHHH
Confidence 999999999887 4567778999999999999987766553 33 348999999999999
Q ss_pred hHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccccc
Q psy3997 175 DLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSLAV 250 (256)
Q Consensus 175 rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~~~ 250 (256)
|||+.+|++|+|+ ...|.++|+.+++.-.....+++|.+|++.|+| |||+||+|
T Consensus 288 RRFekRIYIPLPe----------~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG------------ySGsDisi 341 (439)
T KOG0739|consen 288 RRFEKRIYIPLPE----------AHARARMFKLHLGDTPHVLTEQDFKELARKTEG------------YSGSDISI 341 (439)
T ss_pred HHhhcceeccCCc----------HHHhhhhheeccCCCccccchhhHHHHHhhcCC------------CCcCceEE
Confidence 9999999999999 999999999999988877788999999999999 99999964
No 3
>KOG0738|consensus
Probab=100.00 E-value=2.3e-37 Score=267.15 Aligned_cols=183 Identities=27% Similarity=0.376 Sum_probs=163.6
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
.+|..|=+|+|++||||||||+||+|+|.+++. .||.|+.+.+.++|-|++++.++-+|..|+.. .
T Consensus 239 ~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t---------TFFNVSsstltSKwRGeSEKlvRlLFemARfy-----A 304 (491)
T KOG0738|consen 239 KGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT---------TFFNVSSSTLTSKWRGESEKLVRLLFEMARFY-----A 304 (491)
T ss_pred hhcccccceeeeeCCCCCcHHHHHHHHHHhhcC---------eEEEechhhhhhhhccchHHHHHHHHHHHHHh-----C
Confidence 456666799999999999999999999999974 89999999999999999999999999999976 9
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|++|||||||.|+..|.. ..+.+.++|+.++||.+|||+.....+. +.+.+++ +||+||.|
T Consensus 305 PStIFiDEIDslcs~RG~---s~EHEaSRRvKsELLvQmDG~~~t~e~~-----k~VmVLA-----------ATN~PWdi 365 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGG---SSEHEASRRVKSELLVQMDGVQGTLENS-----KVVMVLA-----------ATNFPWDI 365 (491)
T ss_pred CceeehhhHHHHHhcCCC---ccchhHHHHHHHHHHHHhhccccccccc-----eeEEEEe-----------ccCCCcch
Confidence 999999999999998876 3556778999999999999998755442 4455666 89999999
Q ss_pred HHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 170 EKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 170 d~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
|+|++|||.++|++|+|+ .+.|..+++..++..... .+-.++.|+..++| |||+||
T Consensus 366 DEAlrRRlEKRIyIPLP~----------~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eG------------ySGaDI 421 (491)
T KOG0738|consen 366 DEALRRRLEKRIYIPLPD----------AEARSALIKILLRSVELD-DPVNLEDLAERSEG------------YSGADI 421 (491)
T ss_pred HHHHHHHHhhheeeeCCC----------HHHHHHHHHHhhccccCC-CCccHHHHHHHhcC------------CChHHH
Confidence 999999999999999999 999999999888776655 77899999999999 999999
No 4
>KOG0730|consensus
Probab=100.00 E-value=8.7e-37 Score=278.48 Aligned_cols=175 Identities=28% Similarity=0.417 Sum_probs=157.7
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
++||+|||||||||||||++|+++|++.+. +|+.+.+.+++++|+|++|+.++++|.+|+.. .|+|
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~---------nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~-----aP~I 530 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGM---------NFLSVKGPELFSKYVGESERAIREVFRKARQV-----APCI 530 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcC---------CeeeccCHHHHHHhcCchHHHHHHHHHHHhhc-----CCeE
Confidence 455999999999999999999999999865 89999999999999999999999999999976 9999
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
|||||||.+...|... ..+...|++++||++|||+.... ++.+++ +||.++.||+|
T Consensus 531 iFfDEiDsi~~~R~g~----~~~v~~RVlsqLLtEmDG~e~~k---------~V~ViA-----------ATNRpd~ID~A 586 (693)
T KOG0730|consen 531 IFFDEIDALAGSRGGS----SSGVTDRVLSQLLTEMDGLEALK---------NVLVIA-----------ATNRPDMIDPA 586 (693)
T ss_pred EehhhHHhHhhccCCC----ccchHHHHHHHHHHHcccccccC---------cEEEEe-----------ccCChhhcCHH
Confidence 9999999999998732 22667899999999999998653 444555 89999999999
Q ss_pred Hhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 173 VLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 173 i~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
++| ||+..+++|+|+ .+.|.+|+++..+..+.. .+-++++|++.|.| |||-||
T Consensus 587 LlRPGRlD~iiyVplPD----------~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g------------~SGAel 641 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPD----------LEARLEILKQCAKKMPFS-EDVDLEELAQATEG------------YSGAEI 641 (693)
T ss_pred HcCCcccceeEeecCcc----------HHHHHHHHHHHHhcCCCC-ccccHHHHHHHhcc------------CChHHH
Confidence 999 999999999999 999999999988887776 45899999999999 999998
No 5
>KOG0733|consensus
Probab=100.00 E-value=7.3e-36 Score=269.73 Aligned_cols=180 Identities=29% Similarity=0.431 Sum_probs=157.0
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
|+..|.||||+||||||||.+|+|+|++.|. +|+.|.+.+++++|+|+++..+|.+|++|+.. .||
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~---------NFisVKGPELlNkYVGESErAVR~vFqRAR~s-----aPC 606 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGA---------NFISVKGPELLNKYVGESERAVRQVFQRARAS-----APC 606 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhccC---------ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcC-----CCe
Confidence 3444999999999999999999999999865 89999999999999999999999999999964 999
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.|.+.|.. .....+.|++|+||++|||+..... +.+++ +||.|+.+|+
T Consensus 607 VIFFDEiDaL~p~R~~----~~s~~s~RvvNqLLtElDGl~~R~g---------V~via-----------ATNRPDiIDp 662 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSD----EGSSVSSRVVNQLLTELDGLEERRG---------VYVIA-----------ATNRPDIIDP 662 (802)
T ss_pred EEEecchhhcCcccCC----CCchhHHHHHHHHHHHhcccccccc---------eEEEe-----------ecCCCcccch
Confidence 9999999999999874 3366778999999999999976532 33444 8999999999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcC-CCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCG-TSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~-~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
|++| ||+..+++++|+ .+.|..|++.... +..++..+-++++|++.+.-. +|+|-||
T Consensus 663 AiLRPGRlDk~LyV~lPn----------~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~----------gftGADL 722 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPN----------AEERVAILKTITKNTKPPLSSDVDLDEIARNTKCE----------GFTGADL 722 (802)
T ss_pred hhcCCCccCceeeecCCC----------HHHHHHHHHHHhccCCCCCCcccCHHHHhhccccc----------CCchhhH
Confidence 9998 999999999999 9999999998886 456666779999999999821 3999988
Q ss_pred c
Q psy3997 249 A 249 (256)
Q Consensus 249 ~ 249 (256)
|
T Consensus 723 a 723 (802)
T KOG0733|consen 723 A 723 (802)
T ss_pred H
Confidence 4
No 6
>KOG0733|consensus
Probab=100.00 E-value=1.6e-35 Score=267.63 Aligned_cols=179 Identities=29% Similarity=0.404 Sum_probs=156.3
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
.+.|+.||+|+|||||||||||+||+++|++++. +|+.+++.++++.+.|++++.++++|.+|...
T Consensus 216 ~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v---------Pf~~isApeivSGvSGESEkkiRelF~~A~~~----- 281 (802)
T KOG0733|consen 216 SSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV---------PFLSISAPEIVSGVSGESEKKIRELFDQAKSN----- 281 (802)
T ss_pred hhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC---------ceEeecchhhhcccCcccHHHHHHHHHHHhcc-----
Confidence 3445556999999999999999999999999976 78999999999999999999999999999954
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.||||||||||.+.++|+..+..++ +||+.+||+.||++...... -..+.+ |.+||.|+.
T Consensus 282 aPcivFiDeIDAI~pkRe~aqreME----rRiVaQLlt~mD~l~~~~~~-----g~~VlV-----------IgATnRPDs 341 (802)
T KOG0733|consen 282 APCIVFIDEIDAITPKREEAQREME----RRIVAQLLTSMDELSNEKTK-----GDPVLV-----------IGATNRPDS 341 (802)
T ss_pred CCeEEEeecccccccchhhHHHHHH----HHHHHHHHHhhhcccccccC-----CCCeEE-----------EecCCCCcc
Confidence 9999999999999999987665554 79999999999999764321 022333 448999999
Q ss_pred HHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCc
Q psy3997 169 LEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 169 ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~ 232 (256)
||+|++| ||+..|.+..|+ +.+|.+|++..|+..... .+-+++.||++|||.+
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~----------e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPS----------ETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFV 396 (802)
T ss_pred cCHHHhccccccceeeecCCc----------hHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCcc
Confidence 9999998 999999999999 999999999999877766 3889999999999944
No 7
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7.9e-35 Score=240.13 Aligned_cols=173 Identities=22% Similarity=0.375 Sum_probs=154.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
|++||+|||||||||++|+++|++.. ++++.+++..++..++|.....++++|+.|++. .|||+||
T Consensus 151 PknVLFyGppGTGKTm~Akalane~k---------vp~l~vkat~liGehVGdgar~Ihely~rA~~~-----aPcivFi 216 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAK---------VPLLLVKATELIGEHVGDGARRIHELYERARKA-----APCIVFI 216 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccC---------CceEEechHHHHHHHhhhHHHHHHHHHHHHHhc-----CCeEEEe
Confidence 89999999999999999999999985 478999999999999999999999999999987 9999999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.+.-.|.- +.-.++.+.++|+||++||++... ..++.++ +||.++.||+|+++
T Consensus 217 DE~DAiaLdRry---QelRGDVsEiVNALLTelDgi~en---------eGVvtIa-----------aTN~p~~LD~aiRs 273 (368)
T COG1223 217 DELDAIALDRRY---QELRGDVSEIVNALLTELDGIKEN---------EGVVTIA-----------ATNRPELLDPAIRS 273 (368)
T ss_pred hhhhhhhhhhhH---HHhcccHHHHHHHHHHhccCcccC---------CceEEEe-----------ecCChhhcCHHHHh
Confidence 999999988765 333566788999999999999843 2344555 88999999999999
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
||...|+|.+|+ .+.|.+|++.+....+ ++-+..++.++..|.| |||.||
T Consensus 274 RFEeEIEF~LP~----------~eEr~~ile~y~k~~P-lpv~~~~~~~~~~t~g------------~SgRdi 323 (368)
T COG1223 274 RFEEEIEFKLPN----------DEERLEILEYYAKKFP-LPVDADLRYLAAKTKG------------MSGRDI 323 (368)
T ss_pred hhhheeeeeCCC----------hHHHHHHHHHHHHhCC-CccccCHHHHHHHhCC------------CCchhH
Confidence 999999999999 9999999998887654 4578889999999999 999998
No 8
>KOG0734|consensus
Probab=100.00 E-value=7e-34 Score=253.63 Aligned_cols=180 Identities=25% Similarity=0.360 Sum_probs=157.8
Q ss_pred CcccccccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH
Q psy3997 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE 82 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~ 82 (256)
|.++|-+- |+||||.||||||||+|||++|.+.+. +||+..++++-..|+|.+.+.+|++|..|+.
T Consensus 329 ftrLGGKL-----PKGVLLvGPPGTGKTlLARAvAGEA~V---------PFF~~sGSEFdEm~VGvGArRVRdLF~aAk~ 394 (752)
T KOG0734|consen 329 FTRLGGKL-----PKGVLLVGPPGTGKTLLARAVAGEAGV---------PFFYASGSEFDEMFVGVGARRVRDLFAAAKA 394 (752)
T ss_pred hhhccCcC-----CCceEEeCCCCCchhHHHHHhhcccCC---------CeEeccccchhhhhhcccHHHHHHHHHHHHh
Confidence 45555554 999999999999999999999999765 8899999999999999999999999999996
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
. .||||||||||.+..+|.+.+. .+.+..+|+||.+||++.+.. .+++++ +
T Consensus 395 ~-----APcIIFIDEiDavG~kR~~~~~----~y~kqTlNQLLvEmDGF~qNe---------GiIvig-----------A 445 (752)
T KOG0734|consen 395 R-----APCIIFIDEIDAVGGKRNPSDQ----HYAKQTLNQLLVEMDGFKQNE---------GIIVIG-----------A 445 (752)
T ss_pred c-----CCeEEEEechhhhcccCCccHH----HHHHHHHHHHHHHhcCcCcCC---------ceEEEe-----------c
Confidence 5 9999999999999999876432 266789999999999998654 233444 9
Q ss_pred HHHHHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCc
Q psy3997 163 ENFLIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDST 240 (256)
Q Consensus 163 t~~~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~ 240 (256)
||++++||+|+.| ||+.++.+|.|+ -..|.+|+++|+...... .+-+.+-|++-|+|
T Consensus 446 TNfpe~LD~AL~RPGRFD~~v~Vp~PD----------v~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~G---------- 504 (752)
T KOG0734|consen 446 TNFPEALDKALTRPGRFDRHVTVPLPD----------VRGRTEILKLYLSKIPLD-EDVDPKIIARGTPG---------- 504 (752)
T ss_pred cCChhhhhHHhcCCCccceeEecCCCC----------cccHHHHHHHHHhcCCcc-cCCCHhHhccCCCC----------
Confidence 9999999999998 999999999999 999999999999766554 56888999999999
Q ss_pred cccccccc
Q psy3997 241 LNFSFSSL 248 (256)
Q Consensus 241 ~~~~~~~~ 248 (256)
|||-||
T Consensus 505 --FsGAdL 510 (752)
T KOG0734|consen 505 --FSGADL 510 (752)
T ss_pred --CchHHH
Confidence 999998
No 9
>KOG0737|consensus
Probab=99.97 E-value=4.5e-32 Score=233.75 Aligned_cols=181 Identities=27% Similarity=0.400 Sum_probs=160.2
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
.....+++|||||||||||||++|+++|++.| +.|+.|+.+.+.++|+|++++.++.+|..|.+. +
T Consensus 121 g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag---------a~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl-----~ 186 (386)
T KOG0737|consen 121 GKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG---------ANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL-----Q 186 (386)
T ss_pred cccccCCccceecCCCCchHHHHHHHHHHHcC---------CCcceeeccccchhhHHHHHHHHHHHHhhhhhc-----C
Confidence 34556899999999999999999999999986 488999999999999999999999999999977 9
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|+||||||+|.+.+.|+ ..+.+....+.++|....||+..... .++.+.+ +||.|..+
T Consensus 187 P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~-------~rVlVlg-----------ATNRP~Dl 244 (386)
T KOG0737|consen 187 PSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDS-------ERVLVLG-----------ATNRPFDL 244 (386)
T ss_pred cceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCC-------ceEEEEe-----------CCCCCccH
Confidence 99999999999999884 34456677899999999999986553 2344445 89999999
Q ss_pred HHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccccccc
Q psy3997 170 EKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSLA 249 (256)
Q Consensus 170 d~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~~ 249 (256)
|.|+.||+..++.+++|+ ..+|.+|++-++...... .+-+++++++.|.| ||||||.
T Consensus 245 DeAiiRR~p~rf~V~lP~----------~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~G------------ySGSDLk 301 (386)
T KOG0737|consen 245 DEAIIRRLPRRFHVGLPD----------AEQRRKILKVILKKEKLE-DDVDLDEIAQMTEG------------YSGSDLK 301 (386)
T ss_pred HHHHHHhCcceeeeCCCc----------hhhHHHHHHHHhcccccC-cccCHHHHHHhcCC------------CcHHHHH
Confidence 999999999999999999 999999999998776665 67899999999999 9999993
No 10
>KOG0727|consensus
Probab=99.97 E-value=4.8e-32 Score=223.17 Aligned_cols=177 Identities=27% Similarity=0.389 Sum_probs=150.3
Q ss_pred cccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc
Q psy3997 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 8 ~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~ 87 (256)
+++-++.||+|+|+|||||||||++|+++|+.. .+.|+.+.++++..+|.|++...++++|..|++
T Consensus 181 y~qigidpprgvllygppg~gktml~kava~~t---------~a~firvvgsefvqkylgegprmvrdvfrlake----- 246 (408)
T KOG0727|consen 181 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---------TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----- 246 (408)
T ss_pred HHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---------chheeeeccHHHHHHHhccCcHHHHHHHHHHhc-----
Confidence 455677889999999999999999999999996 468999999999999999999999999999995
Q ss_pred CCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 88 ESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
+.|+||||||+|.+..+|-.++.+.+ .+..|++-+||++||+++..+. -..+.+||..+
T Consensus 247 napsiifideidaiatkrfdaqtgad-revqril~ellnqmdgfdq~~n--------------------vkvimatnrad 305 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAIATKRFDAQTGAD-REVQRILIELLNQMDGFDQTTN--------------------VKVIMATNRAD 305 (408)
T ss_pred cCCcEEEeehhhhHhhhhcccccccc-HHHHHHHHHHHHhccCcCcccc--------------------eEEEEecCccc
Confidence 49999999999999999988887765 5668899999999999986542 22456788889
Q ss_pred HHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 168 ALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 168 ~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
.||+|+.| |++.+|+||+|+ ..++.-+|...+...... .+-+++.++-.-+.
T Consensus 306 tldpallrpgrldrkiefplpd----------rrqkrlvf~titskm~ls-~~vdle~~v~rpdk 359 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPD----------RRQKRLVFSTITSKMNLS-DEVDLEDLVARPDK 359 (408)
T ss_pred ccCHhhcCCccccccccCCCCc----------hhhhhhhHHhhhhcccCC-cccCHHHHhcCccc
Confidence 99999998 999999999999 888888888766655554 55667776655444
No 11
>KOG0728|consensus
Probab=99.97 E-value=1.2e-31 Score=220.53 Aligned_cols=178 Identities=26% Similarity=0.418 Sum_probs=153.3
Q ss_pred CCcccccccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH
Q psy3997 2 KFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~ 81 (256)
+|..+|+.+ |+|+|||||||||||.+|+++|+.. .|.|+.++++++..+|.|++...++++|-.|+
T Consensus 172 LF~aLGIaQ-----PKGvlLygppgtGktLlaraVahht---------~c~firvsgselvqk~igegsrmvrelfvmar 237 (404)
T KOG0728|consen 172 LFEALGIAQ-----PKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 237 (404)
T ss_pred HHHhcCCCC-----CcceEEecCCCCchhHHHHHHHhhc---------ceEEEEechHHHHHHHhhhhHHHHHHHHHHHH
Confidence 466677766 9999999999999999999999996 56999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccC
Q psy3997 82 EAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVS 161 (256)
Q Consensus 82 ~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~ 161 (256)
+. .|+|||+||||++..+|.....+. +++..|..-+||+++|++.... ++ ..+.
T Consensus 238 eh-----apsiifmdeidsigs~r~e~~~gg-dsevqrtmlellnqldgfeatk---------ni-----------kvim 291 (404)
T KOG0728|consen 238 EH-----APSIIFMDEIDSIGSSRVESGSGG-DSEVQRTMLELLNQLDGFEATK---------NI-----------KVIM 291 (404)
T ss_pred hc-----CCceEeeecccccccccccCCCCc-cHHHHHHHHHHHHhcccccccc---------ce-----------EEEE
Confidence 76 999999999999999988766664 4566777788888999886433 11 2455
Q ss_pred HHHHHHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 162 MENFLIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 162 ~t~~~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
+||..+.||+|+.| |.+.+++||+|+ ++.|.+|++.+....... ..-+++++++.-+|
T Consensus 292 atnridild~allrpgridrkiefp~p~----------e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 292 ATNRIDILDPALLRPGRIDRKIEFPPPN----------EEARLDILKIHSRKMNLT-RGINLRKIAEKMPG 351 (404)
T ss_pred eccccccccHhhcCCCcccccccCCCCC----------HHHHHHHHHHhhhhhchh-cccCHHHHHHhCCC
Confidence 77888999999998 999999999999 999999999888776665 55788999999998
No 12
>KOG0735|consensus
Probab=99.97 E-value=1.5e-31 Score=245.12 Aligned_cols=180 Identities=27% Similarity=0.406 Sum_probs=154.3
Q ss_pred CcccccccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH
Q psy3997 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE 82 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~ 82 (256)
|+.++++- +.|||||||||||||.+|.++|..++. +|+.|.+.++.++|.|.++.++|.+|.+|+.
T Consensus 693 f~~~plr~-----~~giLLyGppGcGKT~la~a~a~~~~~---------~fisvKGPElL~KyIGaSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 693 FANCPLRL-----RTGILLYGPPGCGKTLLASAIASNSNL---------RFISVKGPELLSKYIGASEQNVRDLFERAQS 758 (952)
T ss_pred HhhCCccc-----ccceEEECCCCCcHHHHHHHHHhhCCe---------eEEEecCHHHHHHHhcccHHHHHHHHHHhhc
Confidence 45555554 899999999999999999999999865 8999999999999999999999999999997
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
. +|||+|+||+|+++++|+.+..+ ...|++|++|++|||..... .+.+.+ +
T Consensus 759 a-----~PCiLFFDEfdSiAPkRGhDsTG----VTDRVVNQlLTelDG~Egl~---------GV~i~a-----------a 809 (952)
T KOG0735|consen 759 A-----KPCILFFDEFDSIAPKRGHDSTG----VTDRVVNQLLTELDGAEGLD---------GVYILA-----------A 809 (952)
T ss_pred c-----CCeEEEeccccccCcccCCCCCC----chHHHHHHHHHhhccccccc---------eEEEEE-----------e
Confidence 6 99999999999999999865444 44799999999999987633 223444 6
Q ss_pred HHHHHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCc
Q psy3997 163 ENFLIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDST 240 (256)
Q Consensus 163 t~~~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~ 240 (256)
|..++.||+|+.| |+++.++.++|+ +..|.+|+.... ...+...+.+++.+++.|.|
T Consensus 810 TsRpdliDpALLRpGRlD~~v~C~~P~----------~~eRl~il~~ls-~s~~~~~~vdl~~~a~~T~g---------- 868 (952)
T KOG0735|consen 810 TSRPDLIDPALLRPGRLDKLVYCPLPD----------EPERLEILQVLS-NSLLKDTDVDLECLAQKTDG---------- 868 (952)
T ss_pred cCCccccCHhhcCCCccceeeeCCCCC----------cHHHHHHHHHHh-hccCCccccchHHHhhhcCC----------
Confidence 7778999999998 999999999999 999999998544 44455578999999999999
Q ss_pred cccccccc
Q psy3997 241 LNFSFSSL 248 (256)
Q Consensus 241 ~~~~~~~~ 248 (256)
|+|-||
T Consensus 869 --~tgADl 874 (952)
T KOG0735|consen 869 --FTGADL 874 (952)
T ss_pred --CchhhH
Confidence 777776
No 13
>KOG0736|consensus
Probab=99.97 E-value=4.3e-31 Score=243.99 Aligned_cols=177 Identities=23% Similarity=0.354 Sum_probs=149.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCe
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p 90 (256)
.++.+..|||||||||||||.+|+|+|-++.. .|+.|.+.+++++|+|++|.++|++|++|+.. .|
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL---------~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A-----~P 765 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSL---------NFLSVKGPELLNMYVGQSEENVREVFERARSA-----AP 765 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhcee---------eEEeecCHHHHHHHhcchHHHHHHHHHHhhcc-----CC
Confidence 34555889999999999999999999999965 89999999999999999999999999999965 99
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
||||+||+|+++++|... ++..+...|++++||.+||++.+.+ .+.+.+++ +||.|+.||
T Consensus 766 CVIFFDELDSlAP~RG~s--GDSGGVMDRVVSQLLAELDgls~~~-------s~~VFViG-----------ATNRPDLLD 825 (953)
T KOG0736|consen 766 CVIFFDELDSLAPNRGRS--GDSGGVMDRVVSQLLAELDGLSDSS-------SQDVFVIG-----------ATNRPDLLD 825 (953)
T ss_pred eEEEeccccccCccCCCC--CCccccHHHHHHHHHHHhhcccCCC-------CCceEEEe-----------cCCCccccC
Confidence 999999999999999864 4445677899999999999997522 13444555 899999999
Q ss_pred HHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 171 KTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 171 ~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
+|++| ||++-.++.+++. .+.+..+++...+.... ..+-++.++++.+|..
T Consensus 826 pALLRPGRFDKLvyvG~~~d---------~esk~~vL~AlTrkFkL-dedVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 826 PALLRPGRFDKLVYVGPNED---------AESKLRVLEALTRKFKL-DEDVDLVEIAKKCPPN 878 (953)
T ss_pred hhhcCCCccceeEEecCCcc---------HHHHHHHHHHHHHHccC-CCCcCHHHHHhhCCcC
Confidence 99998 9999999999983 56677777755554444 4778899999999984
No 14
>KOG0740|consensus
Probab=99.97 E-value=1.4e-30 Score=231.45 Aligned_cols=184 Identities=27% Similarity=0.359 Sum_probs=161.2
Q ss_pred ccccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHh
Q psy3997 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEY 86 (256)
Q Consensus 7 ~~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~ 86 (256)
.+..++-++++++||.||||||||++++++|.+.+ +.|+.++++++.++|+|++++.++.+|+-|+..
T Consensus 177 d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~---------atff~iSassLtsK~~Ge~eK~vralf~vAr~~--- 244 (428)
T KOG0740|consen 177 DLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG---------ATFFNISASSLTSKYVGESEKLVRALFKVARSL--- 244 (428)
T ss_pred HhhhccccccchhheecCCCCchHHHHHHHHhhhc---------ceEeeccHHHhhhhccChHHHHHHHHHHHHHhc---
Confidence 33445557889999999999999999999999985 589999999999999999999999999999976
Q ss_pred cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHH
Q psy3997 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFL 166 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~ 166 (256)
+|+|+||||||.++.+|. ..+....+++..++|.++++....... ++.+ +++||.|
T Consensus 245 --qPsvifidEidslls~Rs----~~e~e~srr~ktefLiq~~~~~s~~~d-------rvlv-----------igaTN~P 300 (428)
T KOG0740|consen 245 --QPSVIFIDEIDSLLSKRS----DNEHESSRRLKTEFLLQFDGKNSAPDD-------RVLV-----------IGATNRP 300 (428)
T ss_pred --CCeEEEechhHHHHhhcC----CcccccchhhhhHHHhhhccccCCCCC-------eEEE-----------EecCCCc
Confidence 999999999999999984 444566689999999999988754432 3334 4489999
Q ss_pred HHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 167 IALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 167 ~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
|++|.|++|||..++++|+|+ .+.|..++.+.+......-.+.+++.|+++|.| |||+
T Consensus 301 ~e~Dea~~Rrf~kr~yiplPd----------~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg------------ysgs 358 (428)
T KOG0740|consen 301 WELDEAARRRFVKRLYIPLPD----------YETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG------------YSGS 358 (428)
T ss_pred hHHHHHHHHHhhceeeecCCC----------HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC------------cccc
Confidence 999999999999999999999 999999999999887555566999999999999 9999
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 359 di 360 (428)
T KOG0740|consen 359 DI 360 (428)
T ss_pred cH
Confidence 98
No 15
>KOG0652|consensus
Probab=99.97 E-value=6.7e-31 Score=217.29 Aligned_cols=183 Identities=22% Similarity=0.376 Sum_probs=152.7
Q ss_pred CcccccccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH
Q psy3997 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE 82 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~ 82 (256)
|+.+|+++ |+|+|+|||||||||.+||+.|...+ +.|+.+-+..+...|+|.+.+.+++.|..|++
T Consensus 197 F~~lgi~p-----PKGvLmYGPPGTGKTlmARAcAaqT~---------aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKE 262 (424)
T KOG0652|consen 197 FENLGIRP-----PKGVLMYGPPGTGKTLMARACAAQTN---------ATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 262 (424)
T ss_pred HHhcCCCC-----CCceEeeCCCCCcHHHHHHHHHHhcc---------chHHHhcchHHHhhhhcchHHHHHHHHHHhhc
Confidence 45555555 99999999999999999999999974 57888999999999999999999999999996
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
. .|+||||||+|.+..+|...... .+.+..|..-+||++||++.... .+.+++ +
T Consensus 263 k-----aP~IIFIDElDAIGtKRfDSek~-GDREVQRTMLELLNQLDGFss~~---------~vKviA-----------A 316 (424)
T KOG0652|consen 263 K-----APTIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFSSDD---------RVKVIA-----------A 316 (424)
T ss_pred c-----CCeEEEEechhhhcccccccccc-ccHHHHHHHHHHHHhhcCCCCcc---------ceEEEe-----------e
Confidence 4 99999999999999888654333 34555677778888888886543 233344 7
Q ss_pred HHHHHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCc
Q psy3997 163 ENFLIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDST 240 (256)
Q Consensus 163 t~~~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~ 240 (256)
||..+.||+|+.| |++.+|+||.|+ ++.|.+|+..+....... .+-.|++|++.|++
T Consensus 317 TNRvDiLDPALlRSGRLDRKIEfP~Pn----------e~aRarIlQIHsRKMnv~-~DvNfeELaRsTdd---------- 375 (424)
T KOG0652|consen 317 TNRVDILDPALLRSGRLDRKIEFPHPN----------EEARARILQIHSRKMNVS-DDVNFEELARSTDD---------- 375 (424)
T ss_pred cccccccCHHHhhcccccccccCCCCC----------hHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccc----------
Confidence 7888999999988 999999999999 999999999887766554 77899999999998
Q ss_pred cccccccc
Q psy3997 241 LNFSFSSL 248 (256)
Q Consensus 241 ~~~~~~~~ 248 (256)
|+|-+.
T Consensus 376 --FNGAQc 381 (424)
T KOG0652|consen 376 --FNGAQC 381 (424)
T ss_pred --cCchhh
Confidence 777766
No 16
>KOG0744|consensus
Probab=99.96 E-value=5e-30 Score=217.31 Aligned_cols=179 Identities=51% Similarity=0.736 Sum_probs=163.1
Q ss_pred CCCcccccccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
++|+.+++..+++.++|-|||+||||||||+|.+++|+.+.......+.+...+++++..+.++|++++++.+.++|+++
T Consensus 162 l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI 241 (423)
T KOG0744|consen 162 LLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKI 241 (423)
T ss_pred HHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHH
Confidence 47899999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
.+++...+.-..|+|||++++...|....++++..++.|++|++|++||.++.... +...+
T Consensus 242 ~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~N---------vliL~---------- 302 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPN---------VLILA---------- 302 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCC---------EEEEe----------
Confidence 99998877777899999999999999999999999999999999999999986542 22333
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
++|+.+.||.|+..|-+-+.++.+|+ ...|.+|++--+
T Consensus 303 -TSNl~~siD~AfVDRADi~~yVG~Pt----------~~ai~~Ilksci 340 (423)
T KOG0744|consen 303 -TSNLTDSIDVAFVDRADIVFYVGPPT----------AEAIYEILKSCI 340 (423)
T ss_pred -ccchHHHHHHHhhhHhhheeecCCcc----------HHHHHHHHHHHH
Confidence 78999999999999999999999999 888888877443
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=4.1e-30 Score=235.76 Aligned_cols=177 Identities=23% Similarity=0.250 Sum_probs=149.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCe
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p 90 (256)
.++++|+|+|||||||||||++|+++|++++. +++.++++.+.++++|+++..++++|+.|... .|
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~---------~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~-----~P 319 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL---------PLLRLDVGKLFGGIVGESESRMRQMIRIAEAL-----SP 319 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEEhHHhcccccChHHHHHHHHHHHHHhc-----CC
Confidence 46678999999999999999999999999975 77999999999999999999999999998865 89
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
+||||||||.++..+.. ..+.+...++++++++.|++.. ..+.+.+ +||.++.||
T Consensus 320 ~IL~IDEID~~~~~~~~---~~d~~~~~rvl~~lL~~l~~~~-----------~~V~vIa-----------TTN~~~~Ld 374 (489)
T CHL00195 320 CILWIDEIDKAFSNSES---KGDSGTTNRVLATFITWLSEKK-----------SPVFVVA-----------TANNIDLLP 374 (489)
T ss_pred cEEEehhhhhhhccccC---CCCchHHHHHHHHHHHHHhcCC-----------CceEEEE-----------ecCChhhCC
Confidence 99999999999875432 2234556789999999987532 2233444 778889999
Q ss_pred HHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccc-cchhHHHHHHhCCCCcccccCCCcccccccc
Q psy3997 171 KTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQ-HSKHFTELVQSHPGRCKVTSDDSTLNFSFSS 247 (256)
Q Consensus 171 ~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~-~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~ 247 (256)
+++.| ||+..+++++|+ .++|.+|++.++....+.. .+.+++.|++.|.| |||.|
T Consensus 375 ~allR~GRFD~~i~v~lP~----------~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~G------------fSGAd 432 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPS----------LEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNK------------FSGAE 432 (489)
T ss_pred HHHhCCCcCCeEEEeCCcC----------HHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCC------------CCHHH
Confidence 99987 999999999999 9999999999997755432 35789999999999 88888
Q ss_pred c
Q psy3997 248 L 248 (256)
Q Consensus 248 ~ 248 (256)
|
T Consensus 433 I 433 (489)
T CHL00195 433 I 433 (489)
T ss_pred H
Confidence 8
No 18
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.3e-29 Score=220.63 Aligned_cols=182 Identities=18% Similarity=0.267 Sum_probs=145.4
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+++|++++||||||||||++|+++|+++|. +|+.+++.++.++|+|++++.++++|..|.+....+.+||
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~---------~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPc 214 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGI---------EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMS 214 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC---------CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCe
Confidence 4577999999999999999999999999975 7899999999999999999999999999998765567899
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHH-HHHHHHHHHchhhcC-CCC--CchhhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRV-VNAVLTQIDQLKKKS-TGL--SGRTLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i-~~~ll~~ld~~~~~~-~g~--~g~~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
||||||||.+++.+...+ .....++ .++|+++||+..... .|. .......+++++ ++|.++
T Consensus 215 VLFIDEIDA~~g~r~~~~----~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa-----------TTNrpd 279 (413)
T PLN00020 215 CLFINDLDAGAGRFGTTQ----YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV-----------TGNDFS 279 (413)
T ss_pred EEEEehhhhcCCCCCCCC----cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE-----------eCCCcc
Confidence 999999999999875321 2222345 489999999753211 111 011223444555 778889
Q ss_pred HHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 168 ALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 168 ~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
.||++++| ||+..+ .+|+ .++|..|++.+++.... ...++.+|+..++|.
T Consensus 280 ~LDpALlRpGRfDk~i--~lPd----------~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 280 TLYAPLIRDGRMEKFY--WAPT----------REDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQ 331 (413)
T ss_pred cCCHhHcCCCCCCcee--CCCC----------HHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCC
Confidence 99999999 999864 5899 99999999998887644 358999999999993
No 19
>KOG0731|consensus
Probab=99.96 E-value=3.9e-30 Score=240.99 Aligned_cols=185 Identities=22% Similarity=0.329 Sum_probs=155.9
Q ss_pred cccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc
Q psy3997 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 8 ~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~ 87 (256)
+..-+...|+|+||+||||||||.||+|+|.+.|. +|+.+++++++..++|.....++++|..|+..
T Consensus 336 Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV---------PF~svSGSEFvE~~~g~~asrvr~lf~~ar~~---- 402 (774)
T KOG0731|consen 336 YQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV---------PFFSVSGSEFVEMFVGVGASRVRDLFPLARKN---- 402 (774)
T ss_pred HHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC---------ceeeechHHHHHHhcccchHHHHHHHHHhhcc----
Confidence 34445555999999999999999999999999765 88999999999999999999999999999954
Q ss_pred CCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 88 ESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
.|+||||||||.+...|.....+....+....+|+||.+||++...+ .+.+.+ +||.++
T Consensus 403 -aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~---------~vi~~a-----------~tnr~d 461 (774)
T KOG0731|consen 403 -APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK---------GVIVLA-----------ATNRPD 461 (774)
T ss_pred -CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC---------cEEEEe-----------ccCCcc
Confidence 99999999999999988521112223344568999999999997542 234555 788889
Q ss_pred HHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccc
Q psy3997 168 ALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSF 245 (256)
Q Consensus 168 ~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~ 245 (256)
.||+|++| ||+..+.+++|+ ...|.+|++.+.........+.++..++.+||| |+|
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~----------~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~g------------f~g 519 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPD----------VKGRASILKVHLRKKKLDDEDVDLSKLASLTPG------------FSG 519 (774)
T ss_pred ccCHHhcCCCccccceeccCCc----------hhhhHHHHHHHhhccCCCcchhhHHHHHhcCCC------------CcH
Confidence 99999998 999999999999 999999999888777665566788889999999 999
Q ss_pred ccc
Q psy3997 246 SSL 248 (256)
Q Consensus 246 ~~~ 248 (256)
-||
T Consensus 520 adl 522 (774)
T KOG0731|consen 520 ADL 522 (774)
T ss_pred HHH
Confidence 988
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=235.63 Aligned_cols=177 Identities=31% Similarity=0.450 Sum_probs=153.5
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
++.+++++|||||||||||++|+++|.+++. +|+.++.+++.++|+|+++++++++|..|+.. .|+
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~---------~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~-----~p~ 337 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRS---------RFISVKGSELLSKWVGESEKNIRELFEKARKL-----APS 337 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCC---------eEEEeeCHHHhccccchHHHHHHHHHHHHHcC-----CCc
Confidence 5566999999999999999999999998754 89999999999999999999999999999954 999
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.+++.|.... .....++++++|++|+++..... +. .+.+||.++.+|+
T Consensus 338 iiFiDEiDs~~~~r~~~~----~~~~~r~~~~lL~~~d~~e~~~~---------v~-----------vi~aTN~p~~ld~ 393 (494)
T COG0464 338 IIFIDEIDSLASGRGPSE----DGSGRRVVGQLLTELDGIEKAEG---------VL-----------VIAATNRPDDLDP 393 (494)
T ss_pred EEEEEchhhhhccCCCCC----chHHHHHHHHHHHHhcCCCccCc---------eE-----------EEecCCCccccCH
Confidence 999999999999886432 22236899999999999876543 22 2448899999999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcc-cccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYP-LQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~-~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
|+.| ||+..+++++|+ .+.|.++++.++..... ...+-+++.+++.|+| |||.||
T Consensus 394 a~lR~gRfd~~i~v~~pd----------~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~------------~sgadi 451 (494)
T COG0464 394 ALLRPGRFDRLIYVPLPD----------LEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG------------YSGADI 451 (494)
T ss_pred hhcccCccceEeecCCCC----------HHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC------------CCHHHH
Confidence 9999 999999999999 99999999999985444 3456899999998888 899998
No 21
>KOG0726|consensus
Probab=99.96 E-value=1.1e-30 Score=218.87 Aligned_cols=182 Identities=25% Similarity=0.376 Sum_probs=151.4
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
...++.||+|++|||+||||||.||+|+|+... +.|+.+.+++++.+|.|++.+.++++|+.|.+.
T Consensus 212 eemGikpPKGVIlyG~PGTGKTLLAKAVANqTS---------ATFlRvvGseLiQkylGdGpklvRqlF~vA~e~----- 277 (440)
T KOG0726|consen 212 EEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS---------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH----- 277 (440)
T ss_pred HHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc---------hhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc-----
Confidence 344566699999999999999999999999974 488999999999999999999999999999975
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.|+|+||||||.+..+|-..+++.+. +..|..-+||+++|+++.... -..+.+||..+.
T Consensus 278 apSIvFiDEIdAiGtKRyds~Sgger-EiQrtmLELLNQldGFdsrgD--------------------vKvimATnrie~ 336 (440)
T KOG0726|consen 278 APSIVFIDEIDAIGTKRYDSNSGGER-EIQRTMLELLNQLDGFDSRGD--------------------VKVIMATNRIET 336 (440)
T ss_pred CCceEEeehhhhhccccccCCCccHH-HHHHHHHHHHHhccCccccCC--------------------eEEEEecccccc
Confidence 99999999999999999877666654 334555688888888876432 124557888899
Q ss_pred HHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 169 LEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 169 ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
||+|+.| |.+.+|+||.|+ +..|.+||..+....... .+-.+++++...+. |||-
T Consensus 337 LDPaLiRPGrIDrKIef~~pD----------e~TkkkIf~IHTs~Mtl~-~dVnle~li~~kdd------------lSGA 393 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPD----------EKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDD------------LSGA 393 (440)
T ss_pred cCHhhcCCCccccccccCCCc----------hhhhceeEEEeecccchh-ccccHHHHhhcccc------------cccc
Confidence 9999998 999999999999 999999988766655544 66788888776665 8888
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 394 dI 395 (440)
T KOG0726|consen 394 DI 395 (440)
T ss_pred cH
Confidence 87
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4.3e-29 Score=241.42 Aligned_cols=177 Identities=28% Similarity=0.408 Sum_probs=150.6
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
++.+|+|+|||||||||||++|+++|++++. +|+.++++++.++|+|+++..++++|..|+.. .|+
T Consensus 483 g~~~~~giLL~GppGtGKT~lakalA~e~~~---------~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~-----~p~ 548 (733)
T TIGR01243 483 GIRPPKGVLLFGPPGTGKTLLAKAVATESGA---------NFIAVRGPEILSKWVGESEKAIREIFRKARQA-----APA 548 (733)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcCC---------CEEEEehHHHhhcccCcHHHHHHHHHHHHHhc-----CCE
Confidence 4566999999999999999999999999864 78999999999999999999999999999865 899
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||||.+++.|... .......+++++||++||++.... ++.+++ +||.++.||+
T Consensus 549 iifiDEid~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~---------~v~vI~-----------aTn~~~~ld~ 605 (733)
T TIGR01243 549 IIFFDEIDAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELS---------NVVVIA-----------ATNRPDILDP 605 (733)
T ss_pred EEEEEChhhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCC---------CEEEEE-----------eCCChhhCCH
Confidence 99999999999877532 122345689999999999875432 233444 7888999999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
|+.| ||+..+++|+|+ .++|.+|++.+...... ..+.+++.|++.|+| |||.||
T Consensus 606 allRpgRfd~~i~v~~Pd----------~~~R~~i~~~~~~~~~~-~~~~~l~~la~~t~g------------~sgadi 661 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPD----------EEARKEIFKIHTRSMPL-AEDVDLEELAEMTEG------------YTGADI 661 (733)
T ss_pred hhcCCCccceEEEeCCcC----------HHHHHHHHHHHhcCCCC-CccCCHHHHHHHcCC------------CCHHHH
Confidence 9998 999999999999 99999999987765443 355779999999998 889888
No 23
>KOG0729|consensus
Probab=99.95 E-value=1.2e-29 Score=210.48 Aligned_cols=174 Identities=25% Similarity=0.341 Sum_probs=146.2
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCe
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p 90 (256)
.++.||+|+|||||||||||..||++|++. ++.|+.|-.|++..+|+|++...++++|+.|+.. ..
T Consensus 206 lgidppkgvllygppgtgktl~aravanrt---------dacfirvigselvqkyvgegarmvrelf~martk-----ka 271 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRT---------DACFIRVIGSELVQKYVGEGARMVRELFEMARTK-----KA 271 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhccc---------CceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc-----ce
Confidence 345559999999999999999999999997 4589999999999999999999999999999954 78
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
||||+||||.+.+.|-....+. +++..|..-+++++||+++.... ...+.+||.++.||
T Consensus 272 ciiffdeidaiggarfddg~gg-dnevqrtmleli~qldgfdprgn--------------------ikvlmatnrpdtld 330 (435)
T KOG0729|consen 272 CIIFFDEIDAIGGARFDDGAGG-DNEVQRTMLELINQLDGFDPRGN--------------------IKVLMATNRPDTLD 330 (435)
T ss_pred EEEEeeccccccCccccCCCCC-cHHHHHHHHHHHHhccCCCCCCC--------------------eEEEeecCCCCCcC
Confidence 9999999999998887654443 45667777888888888875431 12445789999999
Q ss_pred HHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 171 KTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 171 ~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
+|++| |++.+++|.+|+ -+.|.+|++.+..+.... .+-.++-|++++|.
T Consensus 331 pallrpgrldrkvef~lpd----------legrt~i~kihaksmsve-rdir~ellarlcpn 381 (435)
T KOG0729|consen 331 PALLRPGRLDRKVEFGLPD----------LEGRTHIFKIHAKSMSVE-RDIRFELLARLCPN 381 (435)
T ss_pred HhhcCCcccccceeccCCc----------ccccceeEEEeccccccc-cchhHHHHHhhCCC
Confidence 99998 999999999999 889999988776655443 66789999999987
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.95 E-value=1.2e-28 Score=221.67 Aligned_cols=182 Identities=25% Similarity=0.389 Sum_probs=149.7
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
+..++++|+++|||||||||||++|+++|++++. +|+.+.++++..+|.|+++..++++|..|...
T Consensus 172 ~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---------~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~----- 237 (398)
T PTZ00454 172 EQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---------TFIRVVGSEFVQKYLGEGPRMVRDVFRLAREN----- 237 (398)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---------CEEEEehHHHHHHhcchhHHHHHHHHHHHHhc-----
Confidence 3446677999999999999999999999999854 78999999999999999999999999998854
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.|+||||||+|.++.+|.....+. +....+++.++++.++++.... .+.+ +.+||.++.
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~-d~~~~r~l~~LL~~ld~~~~~~---------~v~V-----------I~aTN~~d~ 296 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGA-DREVQRILLELLNQMDGFDQTT---------NVKV-----------IMATNRADT 296 (398)
T ss_pred CCeEEEEECHhhhccccccccCCc-cHHHHHHHHHHHHHhhccCCCC---------CEEE-----------EEecCCchh
Confidence 899999999999998775433222 3345678889999998875432 1222 336788899
Q ss_pred HHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 169 LEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 169 ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
+|+|+.| ||+.++++++|+ .++|..|++.++...... .+.+++.+++.|+| |||.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~----------~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g------------~sga 353 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPD----------RRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEK------------ISAA 353 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcC----------HHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCC------------CCHH
Confidence 9999988 999999999999 999999999888765433 56789999999999 8888
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 354 DI 355 (398)
T PTZ00454 354 DI 355 (398)
T ss_pred HH
Confidence 87
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-28 Score=226.16 Aligned_cols=181 Identities=23% Similarity=0.356 Sum_probs=153.3
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
.-+...|+|+||+||||||||++|+++|.+.+. +|+.++.+++...|+|...+.+|++|.+|++. .
T Consensus 177 ~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V---------PFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~-----a 242 (596)
T COG0465 177 ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---------PFFSISGSDFVEMFVGVGASRVRDLFEQAKKN-----A 242 (596)
T ss_pred hcccccccceeEecCCCCCcHHHHHHHhcccCC---------CceeccchhhhhhhcCCCcHHHHHHHHHhhcc-----C
Confidence 334456999999999999999999999999865 78999999999999999999999999999954 9
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
||||||||||.+.+.|....++. ..+..-.+|++|.+||++.... .+...+ +||.++-+
T Consensus 243 P~IIFIDEiDAvGr~Rg~g~Ggg-nderEQTLNQlLvEmDGF~~~~---------gvivia-----------aTNRpdVl 301 (596)
T COG0465 243 PCIIFIDEIDAVGRQRGAGLGGG-NDEREQTLNQLLVEMDGFGGNE---------GVIVIA-----------ATNRPDVL 301 (596)
T ss_pred CCeEEEehhhhcccccCCCCCCC-chHHHHHHHHHHhhhccCCCCC---------ceEEEe-----------cCCCcccc
Confidence 99999999999999987653333 2233458999999999997432 233444 88999999
Q ss_pred HHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccccc
Q psy3997 170 EKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSS 247 (256)
Q Consensus 170 d~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~ 247 (256)
|+|+.| ||+..+.++.|+ -..|.+|++-+....... .+-.+..+++.||| |||-|
T Consensus 302 D~ALlRpgRFDRqI~V~~PD----------i~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpG------------fsGAd 358 (596)
T COG0465 302 DPALLRPGRFDRQILVELPD----------IKGREQILKVHAKNKPLA-EDVDLKKIARGTPG------------FSGAD 358 (596)
T ss_pred hHhhcCCCCcceeeecCCcc----------hhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCC------------cccch
Confidence 999998 999999999999 899999999776655554 67888889999999 88888
Q ss_pred c
Q psy3997 248 L 248 (256)
Q Consensus 248 ~ 248 (256)
+
T Consensus 359 L 359 (596)
T COG0465 359 L 359 (596)
T ss_pred H
Confidence 7
No 26
>KOG0741|consensus
Probab=99.94 E-value=3.5e-28 Score=217.13 Aligned_cols=188 Identities=26% Similarity=0.374 Sum_probs=154.6
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc-
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE- 87 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~- 87 (256)
..-+++.-+|+|||||||||||.+||.|...|+.. .-.-|++.+++++|+|+++.++|++|..|.+.-...
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr--------ePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g 320 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR--------EPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLG 320 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC--------CCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhC
Confidence 34455559999999999999999999999999752 456789999999999999999999999997654432
Q ss_pred --CCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHH
Q psy3997 88 --ESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENF 165 (256)
Q Consensus 88 --~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~ 165 (256)
..-.||++||||.++..|.+..++ .+....++|+||..||++.+.. ++.+ |++||.
T Consensus 321 ~~SgLHIIIFDEiDAICKqRGS~~g~--TGVhD~VVNQLLsKmDGVeqLN---------NILV-----------IGMTNR 378 (744)
T KOG0741|consen 321 ANSGLHIIIFDEIDAICKQRGSMAGS--TGVHDTVVNQLLSKMDGVEQLN---------NILV-----------IGMTNR 378 (744)
T ss_pred ccCCceEEEehhhHHHHHhcCCCCCC--CCccHHHHHHHHHhcccHHhhh---------cEEE-----------EeccCc
Confidence 234599999999999998875432 4455679999999999998654 3333 559999
Q ss_pred HHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcC---CCcccccchhHHHHHHhCCCCcccccCCCc
Q psy3997 166 LIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCG---TSYPLQHSKHFTELVQSHPGRCKVTSDDST 240 (256)
Q Consensus 166 ~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~---~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~ 240 (256)
.+.||+|+.| ||.-..++.+|+ |..|.+|++.+.. +...+..+-++++|+.+|+-
T Consensus 379 ~DlIDEALLRPGRlEVqmEIsLPD----------E~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKN---------- 438 (744)
T KOG0741|consen 379 KDLIDEALLRPGRLEVQMEISLPD----------EKGRLQILKIHTKRMRENNKLSADVDLKELAALTKN---------- 438 (744)
T ss_pred hhhHHHHhcCCCceEEEEEEeCCC----------ccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcC----------
Confidence 9999999998 999999999999 9999998887764 34555577999999999997
Q ss_pred cccccccc
Q psy3997 241 LNFSFSSL 248 (256)
Q Consensus 241 ~~~~~~~~ 248 (256)
|||-.|
T Consensus 439 --fSGAEl 444 (744)
T KOG0741|consen 439 --FSGAEL 444 (744)
T ss_pred --CchhHH
Confidence 777666
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.94 E-value=2.1e-27 Score=213.95 Aligned_cols=182 Identities=25% Similarity=0.381 Sum_probs=146.7
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
+..++++|+++|||||||||||++|+++|++++. +|+.++++++..+|.|+++..++.+|+.+...
T Consensus 158 ~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----- 223 (389)
T PRK03992 158 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---------TFIRVVGSELVQKFIGEGARLVRELFELAREK----- 223 (389)
T ss_pred HhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC---------CEEEeehHHHhHhhccchHHHHHHHHHHHHhc-----
Confidence 3445677999999999999999999999999864 78999999999999999999999999998854
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.|+||||||+|.++..+....... .....+.+..++..++++.... .+.+++ +||.++.
T Consensus 224 ~p~IlfiDEiD~l~~~r~~~~~~~-~~~~~~~l~~lL~~ld~~~~~~---------~v~VI~-----------aTn~~~~ 282 (389)
T PRK03992 224 APSIIFIDEIDAIAAKRTDSGTSG-DREVQRTLMQLLAEMDGFDPRG---------NVKIIA-----------ATNRIDI 282 (389)
T ss_pred CCeEEEEechhhhhcccccCCCCc-cHHHHHHHHHHHHhccccCCCC---------CEEEEE-----------ecCChhh
Confidence 899999999999998776432221 2334566777777777664321 222333 6777789
Q ss_pred HHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 169 LEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 169 ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
+|+++.| ||+..+.+++|+ .++|.+|++.++...... .+.+++.+++.|+| |||.
T Consensus 283 ld~allRpgRfd~~I~v~~P~----------~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g------------~sga 339 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPD----------EEGRLEILKIHTRKMNLA-DDVDLEELAELTEG------------ASGA 339 (389)
T ss_pred CCHHHcCCccCceEEEECCCC----------HHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCC------------CCHH
Confidence 9999997 999999999999 999999999888655432 45779999999998 8888
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 340 dl 341 (389)
T PRK03992 340 DL 341 (389)
T ss_pred HH
Confidence 87
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.94 E-value=2.5e-27 Score=219.98 Aligned_cols=179 Identities=23% Similarity=0.363 Sum_probs=148.2
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
+.++|+++|||||||||||++|+++|++++. +|++++++++.+.+.|.++..++++|+.|+.. .|+
T Consensus 84 g~~~~~giLL~GppGtGKT~la~alA~~~~~---------~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~-----~p~ 149 (495)
T TIGR01241 84 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---------PFFSISGSDFVEMFVGVGASRVRDLFEQAKKN-----APC 149 (495)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---------CeeeccHHHHHHHHhcccHHHHHHHHHHHHhc-----CCC
Confidence 4567999999999999999999999999865 78999999999999999999999999999854 899
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.++..+.....+ ......+++++||.+||++.... .+.+++ +||.++.+|+
T Consensus 150 Il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~~d~~~~~~---------~v~vI~-----------aTn~~~~ld~ 208 (495)
T TIGR01241 150 IIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGTNT---------GVIVIA-----------ATNRPDVLDP 208 (495)
T ss_pred EEEEechhhhhhccccCcCC-ccHHHHHHHHHHHhhhccccCCC---------CeEEEE-----------ecCChhhcCH
Confidence 99999999999887643211 12344578999999999885432 233333 7788899999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
++.| ||+..+.+++|+ .++|.+|++.++...... .+.+++.+++.|+| |||.||
T Consensus 209 al~r~gRfd~~i~i~~Pd----------~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G------------~sgadl 264 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPD----------IKGREEILKVHAKNKKLA-PDVDLKAVARRTPG------------FSGADL 264 (495)
T ss_pred HHhcCCcceEEEEcCCCC----------HHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCC------------CCHHHH
Confidence 9998 999999999999 999999999888764432 45778899999998 777776
No 29
>KOG0651|consensus
Probab=99.94 E-value=1.3e-27 Score=201.60 Aligned_cols=177 Identities=25% Similarity=0.398 Sum_probs=141.5
Q ss_pred CcccccccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH
Q psy3997 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE 82 (256)
Q Consensus 3 ~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~ 82 (256)
|-+.+|++ |++++||||||||||.+|+++|..+|. +|+.+.++.+.+++.|++.+.+++.|+.|++
T Consensus 158 f~rvgIk~-----Pkg~ll~GppGtGKTlla~~Vaa~mg~---------nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 158 FLRVGIKP-----PKGLLLYGPPGTGKTLLARAVAATMGV---------NFLKVVSSALVDKYIGESARLIRDMFRYARE 223 (388)
T ss_pred ccccCCCC-----CceeEEeCCCCCchhHHHHHHHHhcCC---------ceEEeeHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 44445555 999999999999999999999999864 8999999999999999999999999999998
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
. .|||||+||||.+.+.+... ....+....+.+..|+.+|++++... ++ ..|.+
T Consensus 224 ~-----~pciifmdeiDAigGRr~se-~Ts~dreiqrTLMeLlnqmdgfd~l~---------rV-----------k~Ima 277 (388)
T KOG0651|consen 224 V-----IPCIIFMDEIDAIGGRRFSE-GTSSDREIQRTLMELLNQMDGFDTLH---------RV-----------KTIMA 277 (388)
T ss_pred h-----CceEEeehhhhhhccEEecc-ccchhHHHHHHHHHHHHhhccchhcc---------cc-----------cEEEe
Confidence 7 89999999999999887433 33334555677777777777776432 22 34558
Q ss_pred HHHHHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 163 ENFLIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 163 t~~~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
+|.++.||+|+.| |+++.+++|+|+ +..|..|.+-+-+..... -+-+.+.++++.+|
T Consensus 278 tNrpdtLdpaLlRpGRldrk~~iPlpn----------e~~r~~I~Kih~~~i~~~-Geid~eaivK~~d~ 336 (388)
T KOG0651|consen 278 TNRPDTLDPALLRPGRLDRKVEIPLPN----------EQARLGILKIHVQPIDFH-GEIDDEAILKLVDG 336 (388)
T ss_pred cCCccccchhhcCCccccceeccCCcc----------hhhceeeEeecccccccc-ccccHHHHHHHHhc
Confidence 8899999999998 999999999999 888888766444333322 33458888888888
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.94 E-value=5.2e-27 Score=212.48 Aligned_cols=180 Identities=24% Similarity=0.379 Sum_probs=145.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCe
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p 90 (256)
.++.+|+++|||||||||||++|+++|++++. +|+.+.++++..+|.|+++..++.+|..|.. ..|
T Consensus 212 ~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~---------~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~-----~~P 277 (438)
T PTZ00361 212 IGIKPPKGVILYGPPGTGKTLLAKAVANETSA---------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE-----NAP 277 (438)
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---------CEEEEecchhhhhhcchHHHHHHHHHHHHHh-----CCC
Confidence 35667999999999999999999999999854 7899999999999999999999999998885 389
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
+||||||||.++.+|.....+. .....+.+.+++..++++.... .+.+ +.+||.++.+|
T Consensus 278 ~ILfIDEID~l~~kR~~~~sgg-~~e~qr~ll~LL~~Ldg~~~~~---------~V~V-----------I~ATNr~d~LD 336 (438)
T PTZ00361 278 SIVFIDEIDAIGTKRYDATSGG-EKEIQRTMLELLNQLDGFDSRG---------DVKV-----------IMATNRIESLD 336 (438)
T ss_pred cEEeHHHHHHHhccCCCCCCcc-cHHHHHHHHHHHHHHhhhcccC---------CeEE-----------EEecCChHHhh
Confidence 9999999999998776433332 2334567778888888775322 1222 33677889999
Q ss_pred HHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 171 KTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 171 ~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
+++.| ||+.++++++|+ .++|.+|++.++...... .+.+++.++..|.| |||.||
T Consensus 337 paLlRpGRfd~~I~~~~Pd----------~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g------------~sgAdI 393 (438)
T PTZ00361 337 PALIRPGRIDRKIEFPNPD----------EKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDE------------LSGADI 393 (438)
T ss_pred HHhccCCeeEEEEEeCCCC----------HHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCC------------CCHHHH
Confidence 99986 999999999999 999999999887655432 45788999999998 778776
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=9.9e-27 Score=213.45 Aligned_cols=173 Identities=24% Similarity=0.387 Sum_probs=136.6
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc-cccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK-YKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~-~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~ 87 (256)
+..++++|+++|||||||||||++|+++|++++.+.... .....|+.+..+++.++|.|+++..++.+|+.++.... .
T Consensus 209 ~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~-~ 287 (512)
T TIGR03689 209 REYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKAS-D 287 (512)
T ss_pred HhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhh-c
Confidence 344566799999999999999999999999997642110 11245677888899999999999999999999987543 3
Q ss_pred CCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 88 ESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
+.|+||||||+|.++++|... ..+....+++++||++||++.... .+.+ +.+||.++
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl~~~~---------~ViV-----------I~ATN~~d 344 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGVESLD---------NVIV-----------IGASNRED 344 (512)
T ss_pred CCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhcccccCC---------ceEE-----------EeccCChh
Confidence 579999999999999877532 122334678999999999886432 2223 33788899
Q ss_pred HHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCccc
Q psy3997 168 ALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPL 215 (256)
Q Consensus 168 ~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~ 215 (256)
.||+|+.| ||+.++++++|+ .++|..|++.++....+.
T Consensus 345 ~LDpALlRpGRfD~~I~~~~Pd----------~e~r~~Il~~~l~~~l~l 384 (512)
T TIGR03689 345 MIDPAILRPGRLDVKIRIERPD----------AEAAADIFSKYLTDSLPL 384 (512)
T ss_pred hCCHhhcCccccceEEEeCCCC----------HHHHHHHHHHHhhccCCc
Confidence 99999998 999999999999 999999999998765444
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.93 E-value=4.2e-26 Score=215.29 Aligned_cols=180 Identities=26% Similarity=0.407 Sum_probs=147.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCe
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p 90 (256)
.+...|+++||+||||||||++|+++|++++. +|++++++++...+.|.+...++.+|..|.. ..|
T Consensus 211 ~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~---------p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~-----~~P 276 (638)
T CHL00176 211 VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV---------PFFSISGSEFVEMFVGVGAARVRDLFKKAKE-----NSP 276 (638)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------CeeeccHHHHHHHhhhhhHHHHHHHHHHHhc-----CCC
Confidence 34566999999999999999999999999865 7899999999888888888889999999885 489
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
+||||||+|.+...|.....+ .......+++++|+.||++.... .+.+.+ +||.++.+|
T Consensus 277 ~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~~dg~~~~~---------~ViVIa-----------aTN~~~~LD 335 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGIGG-GNDEREQTLNQLLTEMDGFKGNK---------GVIVIA-----------ATNRVDILD 335 (638)
T ss_pred cEEEEecchhhhhcccCCCCC-CcHHHHHHHHHHHhhhccccCCC---------CeeEEE-----------ecCchHhhh
Confidence 999999999999877543222 23344578899999999875432 223333 778889999
Q ss_pred HHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 171 KTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 171 ~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
+++.| ||+..+.+++|+ .++|..|++.++.... ...+..+..+++.|+| |||.||
T Consensus 336 ~ALlRpGRFd~~I~v~lPd----------~~~R~~IL~~~l~~~~-~~~d~~l~~lA~~t~G------------~sgaDL 392 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPD----------REGRLDILKVHARNKK-LSPDVSLELIARRTPG------------FSGADL 392 (638)
T ss_pred hhhhccccCceEEEECCCC----------HHHHHHHHHHHHhhcc-cchhHHHHHHHhcCCC------------CCHHHH
Confidence 99997 899999999999 9999999999997733 3356789999999999 888877
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=2.4e-26 Score=229.38 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=132.0
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh--------------------------
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-------------------------- 65 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-------------------------- 65 (256)
++.+|+||||+||||||||.+|+++|.+.+. +|+.+++++++.++
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~V---------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYV---------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCC---------ceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 4567999999999999999999999999865 77999998887543
Q ss_pred ---------------ccchhH--HHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHH
Q psy3997 66 ---------------FSESGK--LVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQI 128 (256)
Q Consensus 66 ---------------~g~~~~--~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~l 128 (256)
++.++. .++.+|+.|+++ .||||+|||||.+..... . ...+++|+++|
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~-----SPCIIFIDEIDaL~~~ds--------~--~ltL~qLLneL 1761 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAM-----SPCIIWIPNIHDLNVNES--------N--YLSLGLLVNSL 1761 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHC-----CCeEEEEEchhhcCCCcc--------c--eehHHHHHHHh
Confidence 112222 378899999976 999999999999976411 0 12478999999
Q ss_pred HchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHH
Q psy3997 129 DQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYL 206 (256)
Q Consensus 129 d~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~ 206 (256)
++...... .+.+.++| +||.|+.||+|++| ||+..+.++.|+ ..+|.+++.
T Consensus 1762 Dg~~~~~s------~~~VIVIA-----------ATNRPD~LDPALLRPGRFDR~I~Ir~Pd----------~p~R~kiL~ 1814 (2281)
T CHL00206 1762 SRDCERCS------TRNILVIA-----------STHIPQKVDPALIAPNKLNTCIKIRRLL----------IPQQRKHFF 1814 (2281)
T ss_pred ccccccCC------CCCEEEEE-----------eCCCcccCCHhHcCCCCCCeEEEeCCCC----------chhHHHHHH
Confidence 87642111 13445555 88999999999998 999999999999 777887776
Q ss_pred HhcCCC-ccccc-chhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 207 MFCGTS-YPLQH-SKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 207 ~~~~~~-~~~~~-~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
..+... ..+.. ..+++.+++.|+| |||.||
T Consensus 1815 ILl~tkg~~L~~~~vdl~~LA~~T~G------------fSGADL 1846 (2281)
T CHL00206 1815 TLSYTRGFHLEKKMFHTNGFGSITMG------------SNARDL 1846 (2281)
T ss_pred HHHhhcCCCCCcccccHHHHHHhCCC------------CCHHHH
Confidence 433211 12212 2468999999999 999998
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.92 E-value=4.5e-25 Score=197.67 Aligned_cols=181 Identities=25% Similarity=0.357 Sum_probs=142.4
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
..++.+|+++|||||||||||++|+++|++++. +|+.+.+.++...+.|+....++.+|+.+... .
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~---------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~ 215 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---------TFIRVVGSELVRKYIGEGARLVREIFELAKEK-----A 215 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC---------CEEecchHHHHHHhhhHHHHHHHHHHHHHHhc-----C
Confidence 345667999999999999999999999999864 67889898888899999888899999988754 8
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|+||||||+|.+...+.....+. .....+.+..++..++++.... ++.+++ ++|.++.+
T Consensus 216 p~il~iDEiD~l~~~~~~~~~~~-~~~~~~~l~~ll~~ld~~~~~~---------~v~vI~-----------ttn~~~~l 274 (364)
T TIGR01242 216 PSIIFIDEIDAIAAKRTDSGTSG-DREVQRTLMQLLAELDGFDPRG---------NVKVIA-----------ATNRPDIL 274 (364)
T ss_pred CcEEEhhhhhhhccccccCCCCc-cHHHHHHHHHHHHHhhCCCCCC---------CEEEEE-----------ecCChhhC
Confidence 99999999999987765432222 2234456677777777654321 222333 66777889
Q ss_pred HHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccccc
Q psy3997 170 EKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSS 247 (256)
Q Consensus 170 d~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~ 247 (256)
|+++.| ||+..+.+++|+ .++|..|++.+....... .+..++.+++.|+| |||.|
T Consensus 275 d~al~r~grfd~~i~v~~P~----------~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g------------~sg~d 331 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPD----------FEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEG------------ASGAD 331 (364)
T ss_pred ChhhcCcccCceEEEeCCcC----------HHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCC------------CCHHH
Confidence 999987 999999999999 999999999887654433 44679999999998 88888
Q ss_pred c
Q psy3997 248 L 248 (256)
Q Consensus 248 ~ 248 (256)
|
T Consensus 332 l 332 (364)
T TIGR01242 332 L 332 (364)
T ss_pred H
Confidence 7
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.91 E-value=1.2e-24 Score=207.07 Aligned_cols=179 Identities=24% Similarity=0.343 Sum_probs=148.1
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
....|+|++|+||||||||++++++|++++. +|+.++++++...+.|.+...++++|..+... .|+
T Consensus 181 ~~~~~~gill~G~~G~GKt~~~~~~a~~~~~---------~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~-----~P~ 246 (644)
T PRK10733 181 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---------PFFTISGSDFVEMFVGVGASRVRDMFEQAKKA-----APC 246 (644)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---------CEEEEehHHhHHhhhcccHHHHHHHHHHHHhc-----CCc
Confidence 3456899999999999999999999999865 78999999999999999999999999998754 899
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.++..|.....+. ......+++++|.+||++.... .+.+++ +||.++.||+
T Consensus 247 IifIDEiD~l~~~r~~~~~g~-~~~~~~~ln~lL~~mdg~~~~~---------~vivIa-----------aTN~p~~lD~ 305 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGG-HDEREQTLNQMLVEMDGFEGNE---------GIIVIA-----------ATNRPDVLDP 305 (644)
T ss_pred EEEehhHhhhhhccCCCCCCC-chHHHHHHHHHHHhhhcccCCC---------CeeEEE-----------ecCChhhcCH
Confidence 999999999998776432222 2344578999999999886432 233334 7889999999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
|+.| ||+..+.+++|+ .+.|.+|++.++...... .+.++..+++.|+| |||.||
T Consensus 306 Al~RpgRfdr~i~v~~Pd----------~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G------------~sgadl 361 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPD----------VRGREQILKVHMRRVPLA-PDIDAAIIARGTPG------------FSGADL 361 (644)
T ss_pred HHhCCcccceEEEcCCCC----------HHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCC------------CCHHHH
Confidence 9997 999999999999 899999999998765443 45678889999998 788777
No 36
>KOG0730|consensus
Probab=99.91 E-value=2.9e-25 Score=203.27 Aligned_cols=174 Identities=29% Similarity=0.348 Sum_probs=151.0
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
++.++++|+++|+|||||||||.+++++|++.+ +.++.+++.+++.++.|++++.+++.|+.+...
T Consensus 211 ~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~---------a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~----- 276 (693)
T KOG0730|consen 211 KSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG---------AFLFLINGPELISKFPGETESNLRKAFAEALKF----- 276 (693)
T ss_pred hhcCCCCCCCccccCCCCCChHHHHHHHHHHhC---------ceeEecccHHHHHhcccchHHHHHHHHHHHhcc-----
Confidence 445667799999999999999999999999985 588999999999999999999999999999964
Q ss_pred C-eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 89 S-LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 89 ~-p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
+ |+++||||+|.++++|..... ..+|++.++++.||+.... .++++++ ++|.++
T Consensus 277 ~~psii~IdEld~l~p~r~~~~~-----~e~Rv~sqlltL~dg~~~~---------~~vivl~-----------atnrp~ 331 (693)
T KOG0730|consen 277 QVPSIIFIDELDALCPKREGADD-----VESRVVSQLLTLLDGLKPD---------AKVIVLA-----------ATNRPD 331 (693)
T ss_pred CCCeeEeHHhHhhhCCcccccch-----HHHHHHHHHHHHHhhCcCc---------CcEEEEE-----------ecCCcc
Confidence 6 999999999999999875432 4589999999999998732 2333344 778889
Q ss_pred HHHHHHhh-HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCc
Q psy3997 168 ALEKTVLD-LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 168 ~ld~ai~r-Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~ 232 (256)
.||++++| ||+..+.+..|+ +.+|.+|.+.++...... .+.++..++..|+|++
T Consensus 332 sld~alRRgRfd~ev~IgiP~----------~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 332 SLDPALRRGRFDREVEIGIPG----------SDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYV 386 (693)
T ss_pred ccChhhhcCCCcceeeecCCC----------chhHHHHHHHHHHhcCCc-chhhHHHHHHHccchh
Confidence 99999997 999999999999 999999999888776665 6799999999999965
No 37
>KOG0732|consensus
Probab=99.90 E-value=1.4e-24 Score=208.66 Aligned_cols=180 Identities=23% Similarity=0.304 Sum_probs=154.2
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCe
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p 90 (256)
-.+.||+|+|+|||||||||..|+++|..+.. .+.+..|+.-+..+..++|+|+.+..++-+|..|+.. +|
T Consensus 294 ~~itpPrgvL~~GppGTGkTl~araLa~~~s~----~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~-----qP 364 (1080)
T KOG0732|consen 294 FNITPPRGVLFHGPPGTGKTLMARALAAACSR----GNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKT-----QP 364 (1080)
T ss_pred cccCCCcceeecCCCCCchhHHHHhhhhhhcc----cccccchhhhcCchhhccccCcHHHHHHHHHHHHhcc-----Cc
Confidence 34566999999999999999999999999864 3467789999999999999999999999999999965 99
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
+|||+||||.+++.|...+...+ ..|+.+||..|||+......+ .+++||.++++|
T Consensus 365 SIIffdeIdGlapvrSskqEqih----~SIvSTLLaLmdGldsRgqVv--------------------vigATnRpda~d 420 (1080)
T KOG0732|consen 365 SIIFFDEIDGLAPVRSSKQEQIH----ASIVSTLLALMDGLDSRGQVV--------------------VIGATNRPDAID 420 (1080)
T ss_pred eEEeccccccccccccchHHHhh----hhHHHHHHHhccCCCCCCceE--------------------EEcccCCccccc
Confidence 99999999999998865443333 469999999999998755332 355899999999
Q ss_pred HHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 171 KTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 171 ~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
+|++| ||+...+|++|+ .+.|.+|+......-.+-......++|++.|.|++.
T Consensus 421 paLRRPgrfdref~f~lp~----------~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~g 475 (1080)
T KOG0732|consen 421 PALRRPGRFDREFYFPLPD----------VDARAKILDIHTRKWEPPISRELLLWLAEETSGYGG 475 (1080)
T ss_pred hhhcCCcccceeEeeeCCc----------hHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccch
Confidence 99987 999999999999 999999998777655555466999999999999763
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=8e-24 Score=204.83 Aligned_cols=173 Identities=29% Similarity=0.383 Sum_probs=141.6
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
..++.+|+++|||||||||||++++++|++++. +++.+++.++.+++.|+++..++.+|+.+... .
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~laraia~~~~~---------~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~-----~ 271 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA---------YFISINGPEIMSKYYGESEERLREIFKEAEEN-----A 271 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHHHHHHHhCC---------eEEEEecHHHhcccccHHHHHHHHHHHHHHhc-----C
Confidence 345667999999999999999999999999864 78999999999999999999999999998754 8
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|+||||||+|.+++.+.... .....+++++|++.|+++.... .+.+ +.++|.++.+
T Consensus 272 p~il~iDEid~l~~~r~~~~----~~~~~~~~~~Ll~~ld~l~~~~---------~viv-----------I~atn~~~~l 327 (733)
T TIGR01243 272 PSIIFIDEIDAIAPKREEVT----GEVEKRVVAQLLTLMDGLKGRG---------RVIV-----------IGATNRPDAL 327 (733)
T ss_pred CcEEEeehhhhhcccccCCc----chHHHHHHHHHHHHhhccccCC---------CEEE-----------EeecCChhhc
Confidence 99999999999998765321 2233678999999999875432 1222 3366778999
Q ss_pred HHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 170 EKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 170 d~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
|++++| ||+..+.+++|+ .++|.+|++.++..... ..+..++.+++.|+|.
T Consensus 328 d~al~r~gRfd~~i~i~~P~----------~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~ 380 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPD----------KRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGF 380 (733)
T ss_pred CHHHhCchhccEEEEeCCcC----------HHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCC
Confidence 999987 999999999999 99999999977765433 2456789999999993
No 39
>KOG0742|consensus
Probab=99.87 E-value=2.1e-22 Score=175.81 Aligned_cols=149 Identities=22% Similarity=0.331 Sum_probs=113.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
|-++||+|||||||||++|+.+|...|. .|-.+++.+.- ..-.+....++++|+++++ .++.-++|
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGl---------DYA~mTGGDVA-PlG~qaVTkiH~lFDWakk----S~rGLllF 448 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGL---------DYAIMTGGDVA-PLGAQAVTKIHKLFDWAKK----SRRGLLLF 448 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCC---------ceehhcCCCcc-ccchHHHHHHHHHHHHHhh----cccceEEE
Confidence 4589999999999999999999999987 44556655542 2122355679999999987 45778999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||+|.+...|... ..+...+..+|.||=- +|...+.+...- ++|.|..+|-|+.
T Consensus 449 IDEADAFLceRnkt---ymSEaqRsaLNAlLfR-----------TGdqSrdivLvl-----------AtNrpgdlDsAV~ 503 (630)
T KOG0742|consen 449 IDEADAFLCERNKT---YMSEAQRSALNALLFR-----------TGDQSRDIVLVL-----------ATNRPGDLDSAVN 503 (630)
T ss_pred ehhhHHHHHHhchh---hhcHHHHHHHHHHHHH-----------hcccccceEEEe-----------ccCCccchhHHHH
Confidence 99999999998863 3345556667776521 122223333333 7889999999999
Q ss_pred hHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC
Q psy3997 175 DLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS 212 (256)
Q Consensus 175 rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~ 212 (256)
.|++..++||+|. ++.|.+++.+|+...
T Consensus 504 DRide~veFpLPG----------eEERfkll~lYlnky 531 (630)
T KOG0742|consen 504 DRIDEVVEFPLPG----------EEERFKLLNLYLNKY 531 (630)
T ss_pred hhhhheeecCCCC----------hHHHHHHHHHHHHHH
Confidence 9999999999999 999999999888643
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=1.2e-21 Score=149.90 Aligned_cols=131 Identities=33% Similarity=0.539 Sum_probs=106.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeCcc
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEI 98 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEi 98 (256)
|||+||||||||++|+.+|+.++. +++++++.++.+.+.+.+...++++|+.+... ..|+||+|||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~---------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF---------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKS----AKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS---------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT----STSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhccc---------cccccccccccccccccccccccccccccccc----ccceeeeeccc
Confidence 699999999999999999999964 78999999999888899999999999998864 13899999999
Q ss_pred hhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh-hHh
Q psy3997 99 ESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL-DLL 177 (256)
Q Consensus 99 d~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~-rRf 177 (256)
|.+..... .........+++.++..++...... .++.+.+ ++|.++.+++++. +||
T Consensus 68 d~l~~~~~----~~~~~~~~~~~~~L~~~l~~~~~~~--------~~~~vI~-----------ttn~~~~i~~~l~~~rf 124 (132)
T PF00004_consen 68 DKLFPKSQ----PSSSSFEQRLLNQLLSLLDNPSSKN--------SRVIVIA-----------TTNSPDKIDPALLRSRF 124 (132)
T ss_dssp GGTSHHCS----TSSSHHHHHHHHHHHHHHHTTTTTS--------SSEEEEE-----------EESSGGGSCHHHHSTTS
T ss_pred hhcccccc----cccccccccccceeeeccccccccc--------ccceeEE-----------eeCChhhCCHhHHhCCC
Confidence 99998871 2234555678999999999887542 2233333 5566788999999 999
Q ss_pred hhhhccCC
Q psy3997 178 VEEKSLPL 185 (256)
Q Consensus 178 ~~~i~~~~ 185 (256)
+.++++|+
T Consensus 125 ~~~i~~~~ 132 (132)
T PF00004_consen 125 DRRIEFPL 132 (132)
T ss_dssp EEEEEE-S
T ss_pred cEEEEcCC
Confidence 99988874
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=2.8e-18 Score=147.11 Aligned_cols=168 Identities=15% Similarity=0.212 Sum_probs=116.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+.+++|+||||||||++|+++|+.+... .......+++++++++.+.++|+++..++++|+.+. ++||||
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~--~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~--------~~VL~I 111 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM--NVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL--------GGVLFI 111 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc--CcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc--------CCEEEE
Confidence 4579999999999999999999987421 112345789999999999999999988888887653 469999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.|.+.. +.......++.+++.|+.... .+.+.. +... ...+....+++++.+
T Consensus 112 DE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~~~-----------~~~vil---a~~~---~~~~~~~~~~p~L~s 167 (261)
T TIGR02881 112 DEAYSLARGG-------EKDFGKEAIDTLVKGMEDNRN-----------EFVLIL---AGYS---DEMDYFLSLNPGLRS 167 (261)
T ss_pred echhhhccCC-------ccchHHHHHHHHHHHHhccCC-----------CEEEEe---cCCc---chhHHHHhcChHHHh
Confidence 9999996421 112234577888888876421 111111 0000 011333457889999
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHh
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQS 227 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~ 227 (256)
||...+.+|.++ .+++..+++.++......-.+..++.|++.
T Consensus 168 Rf~~~i~f~~~~----------~~el~~Il~~~~~~~~~~l~~~a~~~l~~~ 209 (261)
T TIGR02881 168 RFPISIDFPDYT----------VEELMEIAERMVKEREYKLTEEAKWKLREH 209 (261)
T ss_pred ccceEEEECCCC----------HHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Confidence 999899999999 899999999888654332234555555443
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=5.3e-18 Score=146.89 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=109.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+.+++|+||||||||++|+++|+.+... ......++++++++++...++|+++..++.+|+.+. ++||||
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~--g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~--------ggVLfI 128 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL--GYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM--------GGVLFI 128 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc--CCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc--------CCEEEE
Confidence 3459999999999999999999987421 112334689999999999999988877777776543 469999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||++.+...+. +...+..++..|+..|+... ..+.++. +..... + +....+++++.+
T Consensus 129 DE~~~l~~~~~------~~~~~~e~~~~L~~~me~~~-----------~~~~vI~---ag~~~~--~-~~~~~~np~L~s 185 (287)
T CHL00181 129 DEAYYLYKPDN------ERDYGSEAIEILLQVMENQR-----------DDLVVIF---AGYKDR--M-DKFYESNPGLSS 185 (287)
T ss_pred EccchhccCCC------ccchHHHHHHHHHHHHhcCC-----------CCEEEEE---eCCcHH--H-HHHHhcCHHHHH
Confidence 99999965322 12234678888999887532 1111111 000000 1 111234589999
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSY 213 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~ 213 (256)
||...+.|++++ .+++.+|+..++....
T Consensus 186 R~~~~i~F~~~t----------~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 186 RIANHVDFPDYT----------PEELLQIAKIMLEEQQ 213 (287)
T ss_pred hCCceEEcCCcC----------HHHHHHHHHHHHHHhc
Confidence 999999999999 8899999999986543
No 43
>KOG0743|consensus
Probab=99.74 E-value=3.4e-18 Score=151.76 Aligned_cols=156 Identities=20% Similarity=0.207 Sum_probs=115.6
Q ss_pred cccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc
Q psy3997 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 8 ~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~ 87 (256)
++.-|.+|.||.|||||||||||+++-|||+.|+. .++.++-++.. ... .++++...+.
T Consensus 227 YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y---------dIydLeLt~v~-----~n~-dLr~LL~~t~------ 285 (457)
T KOG0743|consen 227 YKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY---------DIYDLELTEVK-----LDS-DLRHLLLATP------ 285 (457)
T ss_pred HHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC---------ceEEeeecccc-----CcH-HHHHHHHhCC------
Confidence 45567889999999999999999999999999975 55666654432 222 2667666544
Q ss_pred CCeEEEEeCcchhhhhhhhcccCC--CCC-CcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHH
Q psy3997 88 ESLVCLLIDEIESLTRARESVMSG--TEP-SDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMEN 164 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~r~~~~~~--~~~-~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~ 164 (256)
..+||+|++||+-+..+...... ... ......++.||+.+||+.....+ +++ .+.+||
T Consensus 286 -~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~------ERI------------ivFTTN 346 (457)
T KOG0743|consen 286 -NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGD------ERI------------IVFTTN 346 (457)
T ss_pred -CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCC------ceE------------EEEecC
Confidence 67899999999987655433221 111 12345789999999999875532 111 344678
Q ss_pred HHHHHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCc
Q psy3997 165 FLIALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSY 213 (256)
Q Consensus 165 ~~~~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~ 213 (256)
+.+.||+|+.| |++.++++..=+ .++-..+...|++...
T Consensus 347 h~EkLDPALlRpGRmDmhI~mgyCt----------f~~fK~La~nYL~~~~ 387 (457)
T KOG0743|consen 347 HKEKLDPALLRPGRMDMHIYMGYCT----------FEAFKTLASNYLGIEE 387 (457)
T ss_pred ChhhcCHhhcCCCcceeEEEcCCCC----------HHHHHHHHHHhcCCCC
Confidence 88999999999 999999999988 7788888888887643
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=2.8e-17 Score=142.36 Aligned_cols=169 Identities=14% Similarity=0.150 Sum_probs=115.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
+..+++|+||||||||++|+++|+.+...- .....+|++++++++...++|+++..++++|+.+. +++||
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g--~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~--------~gvL~ 126 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLG--YVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM--------GGVLF 126 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcC--CcccceEEEecHHHHhHhhcccchHHHHHHHHHcc--------CcEEE
Confidence 345899999999999999999999885311 11223699999999999999988877777777643 37999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||++.+.+.+. +......+.+.|++.|+... ..+.+++ +...+ ..+....+++++.
T Consensus 127 iDEi~~L~~~~~------~~~~~~~~~~~Ll~~le~~~-----------~~~~vI~---a~~~~---~~~~~~~~np~L~ 183 (284)
T TIGR02880 127 IDEAYYLYRPDN------ERDYGQEAIEILLQVMENQR-----------DDLVVIL---AGYKD---RMDSFFESNPGFS 183 (284)
T ss_pred EechhhhccCCC------ccchHHHHHHHHHHHHhcCC-----------CCEEEEE---eCCcH---HHHHHHhhCHHHH
Confidence 999999864322 12334567888999887532 1111111 00011 1122334689999
Q ss_pred hHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHH
Q psy3997 175 DLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQ 226 (256)
Q Consensus 175 rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~ 226 (256)
+||...+.+|+++ .+.+..|+..++......-.+..++.+.+
T Consensus 184 sR~~~~i~fp~l~----------~edl~~I~~~~l~~~~~~l~~~a~~~L~~ 225 (284)
T TIGR02880 184 SRVAHHVDFPDYS----------EAELLVIAGLMLKEQQYRFSAEAEEAFAD 225 (284)
T ss_pred hhCCcEEEeCCcC----------HHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 9999999999999 88888888888865433223344444443
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=4.7e-16 Score=150.65 Aligned_cols=171 Identities=15% Similarity=0.233 Sum_probs=118.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh-hhcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~-~~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
..+++|+||||||||++|+++|+.+... ......+.+++.++++.+. .++.|+.+..++++|+.+... .++|
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~-----~~~I 277 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE-----PNAI 277 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc-----CCeE
Confidence 5689999999999999999999987321 0001125678999988887 578899999999999988743 6899
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHH-----HH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENF-----LI 167 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~-----~~ 167 (256)
|||||+|.+.+.+.... ......+.|...|+. | .+.+++ +|+. ..
T Consensus 278 LfiDEih~l~~~g~~~~------~~~~~~~~L~~~l~~------g-------~i~~Ig-----------aTt~~e~~~~~ 327 (731)
T TIGR02639 278 LFIDEIHTIVGAGATSG------GSMDASNLLKPALSS------G-------KLRCIG-----------STTYEEYKNHF 327 (731)
T ss_pred EEEecHHHHhccCCCCC------ccHHHHHHHHHHHhC------C-------CeEEEE-----------ecCHHHHHHHh
Confidence 99999999987653211 111233444444331 1 111222 2222 34
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC----CcccccchhHHHHHHhCCCCc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT----SYPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~----~~~~~~~~~~~~l~~~t~g~~ 232 (256)
.+|+|+.|||. .+.++.|+ .+++..|++..... ....-.+..++.+++++..++
T Consensus 328 ~~d~al~rRf~-~i~v~~p~----------~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 328 EKDRALSRRFQ-KIDVGEPS----------IEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred hhhHHHHHhCc-eEEeCCCC----------HHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 67999999997 68999999 88888888854432 111125588888998887765
No 46
>KOG0736|consensus
Probab=99.66 E-value=2.8e-16 Score=146.45 Aligned_cols=172 Identities=23% Similarity=0.448 Sum_probs=133.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.....+||+|+||||||++++++|+++|. ++++++|.++.....+.++.++...|.+|+.+ .|+||
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~---------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~-----~pavi 494 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGL---------HLLEVDCYELVAESASHTETKLQAIFSRARRC-----SPAVL 494 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCC---------ceEeccHHHHhhcccchhHHHHHHHHHHHhhc-----CceEE
Confidence 34667999999999999999999999987 78999999999988889999999999999976 99999
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHH--chhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQID--QLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld--~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
|+-+.|.+..++. .+...++...+-.++. -.....+ ...+.+ .++..+.+.+
T Consensus 495 fl~~~dvl~id~d-------gged~rl~~~i~~~ls~e~~~~~~~--------~~ivv~-----------t~~s~~~lp~ 548 (953)
T KOG0736|consen 495 FLRNLDVLGIDQD-------GGEDARLLKVIRHLLSNEDFKFSCP--------PVIVVA-----------TTSSIEDLPA 548 (953)
T ss_pred EEeccceeeecCC-------CchhHHHHHHHHHHHhcccccCCCC--------ceEEEE-----------eccccccCCH
Confidence 9999999984432 1333455554444443 1111111 111222 4444577888
Q ss_pred HHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
.+++.|.+.+.++.|+ +++|.++++++..... ...+...+.+++.|+| ||.+++
T Consensus 549 ~i~~~f~~ei~~~~ls----------e~qRl~iLq~y~~~~~-~n~~v~~k~~a~~t~g------------fs~~~L 602 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALS----------EEQRLEILQWYLNHLP-LNQDVNLKQLARKTSG------------FSFGDL 602 (953)
T ss_pred HHHHhhhhhccCCCCC----------HHHHHHHHHHHHhccc-cchHHHHHHHHHhcCC------------CCHHHH
Confidence 8999999999999999 9999999998876655 4466888999999999 777776
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=1.3e-15 Score=133.58 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=60.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
..+++|||||||||||+|+.||+.++. .|..+++. ..+.+.++++++.|++.... ++..|||+
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~---------~f~~~sAv-------~~gvkdlr~i~e~a~~~~~~-gr~tiLfl 110 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNA---------AFEALSAV-------TSGVKDLREIIEEARKNRLL-GRRTILFL 110 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCC---------ceEEeccc-------cccHHHHHHHHHHHHHHHhc-CCceEEEE
Confidence 456899999999999999999999864 78888873 33556799999999876543 56789999
Q ss_pred Ccchhhhhhhh
Q psy3997 96 DEIESLTRARE 106 (256)
Q Consensus 96 DEid~l~~~r~ 106 (256)
|||++|....+
T Consensus 111 DEIHRfnK~QQ 121 (436)
T COG2256 111 DEIHRFNKAQQ 121 (436)
T ss_pred ehhhhcChhhh
Confidence 99999976544
No 48
>KOG0735|consensus
Probab=99.59 E-value=6e-15 Score=136.72 Aligned_cols=178 Identities=20% Similarity=0.250 Sum_probs=122.7
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
+..+.+|||+||+|+|||.|+++++.++..+. .+++..++|+.+-.+-+....+-+..+|..+. +.+|+|
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~-----~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~-----~~~PSi 497 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDL-----IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL-----WYAPSI 497 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhcccc-----ceEEEEEechhccchhHHHHHHHHHHHHHHHH-----hhCCcE
Confidence 34568899999999999999999999998654 56889999998865543334444555666655 449999
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHH-HchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQI-DQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~l-d~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
|++|++|.++..... .+.........++.+++++ ..+.... +.+.+++ .-+-...+.+
T Consensus 498 IvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~--------~~ia~Ia-----------t~qe~qtl~~ 556 (952)
T KOG0735|consen 498 IVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRN--------RKIAVIA-----------TGQELQTLNP 556 (952)
T ss_pred EEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccC--------cEEEEEE-----------echhhhhcCh
Confidence 999999999983222 1222334445556666544 3333222 2223333 1122233444
Q ss_pred HHh--hHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 172 TVL--DLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 172 ai~--rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
-+. ++|.....+|.|+ ..+|..|++.+++........++++-++..|+|+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~----------~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPA----------VTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred hhcCccceEEEEecCCcc----------hhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 443 3899999999999 9999999999998776554557888899999993
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.59 E-value=4.6e-15 Score=131.24 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=103.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
++.+++||||||||||++|+++|++++. .+..++...+. ....+..++.. ...+.|||
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~---------~~~~~~~~~~~------~~~~l~~~l~~-------l~~~~vl~ 107 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGV---------NIRITSGPALE------KPGDLAAILTN-------LEEGDVLF 107 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCC---------CeEEEeccccc------ChHHHHHHHHh-------cccCCEEE
Confidence 4678999999999999999999999975 34444443221 11223333332 23678999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhc---CCCCCchh----hhcccchhhHhhhhcCccCHHHHHH
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK---STGLSGRT----LRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~---~~g~~g~~----~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
|||||.+.... ...+...|+..... ..+..... +..+.+ +.+++...
T Consensus 108 IDEi~~l~~~~---------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l-----------i~at~~~~ 161 (328)
T PRK00080 108 IDEIHRLSPVV---------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL-----------IGATTRAG 161 (328)
T ss_pred EecHhhcchHH---------------HHHHHHHHHhcceeeeeccCccccceeecCCCceE-----------EeecCCcc
Confidence 99999985432 12234445433210 00100000 011111 22444446
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
.+++++++||...+.++.|+ .+.+.++++...+.....-.+..++.|++.+.|+.+.+
T Consensus 162 ~l~~~L~sRf~~~~~l~~~~----------~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a 219 (328)
T PRK00080 162 LLTSPLRDRFGIVQRLEFYT----------VEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIA 219 (328)
T ss_pred cCCHHHHHhcCeeeecCCCC----------HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHH
Confidence 68888999999889999999 88888888887766554445588999999999976533
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.56 E-value=1.1e-14 Score=127.42 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
.+.+++|+||||||||++|+++|++++. .+..+.+..... ...+...+.. ...+.++|
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~---------~~~~~~~~~~~~------~~~l~~~l~~-------~~~~~vl~ 86 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGV---------NLKITSGPALEK------PGDLAAILTN-------LEEGDVLF 86 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC---------CEEEeccchhcC------chhHHHHHHh-------cccCCEEE
Confidence 3567999999999999999999999864 333433322111 1112222221 23668999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhc---CCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK---STGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~---~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
|||++.+.+. ....|+..|++.... ..+......+ ..... ...+.+|+....+++
T Consensus 87 iDEi~~l~~~---------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------~~li~~t~~~~~l~~ 144 (305)
T TIGR00635 87 IDEIHRLSPA---------------VEELLYPAMEDFRLDIVIGKGPSARSVR-LDLPP------FTLVGATTRAGMLTS 144 (305)
T ss_pred EehHhhhCHH---------------HHHHhhHHHhhhheeeeeccCcccccee-ecCCC------eEEEEecCCccccCH
Confidence 9999998643 223345555543311 0000000000 00000 112334555677888
Q ss_pred HHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 172 TVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 172 ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
++.+||...+.+++++ .+.+.++++..++.....-.+..++.|++.+.|+.+.+
T Consensus 145 ~l~sR~~~~~~l~~l~----------~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~ 198 (305)
T TIGR00635 145 PLRDRFGIILRLEFYT----------VEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIA 198 (305)
T ss_pred HHHhhcceEEEeCCCC----------HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchH
Confidence 9999998888999999 77788888877764444335588899999999987544
No 51
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=2.4e-14 Score=138.03 Aligned_cols=171 Identities=15% Similarity=0.196 Sum_probs=110.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh-hhcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~-~~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
+.++||+||||||||++|+++|+.+-.. ......++.++.++...+. .++.|+.+..++.+|+.+... .+.|
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~-----~~~I 281 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-----TNSI 281 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhc-----CCCE
Confidence 5678999999999999999999875211 0001124567777766665 456788888899999887743 6789
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHH-----H
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFL-----I 167 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~-----~ 167 (256)
|||||+|.+.+.+... .....+.+.|...+.. ..+.+++ +|+.. .
T Consensus 282 LfIDEIh~L~g~g~~~------~g~~d~~nlLkp~L~~-------------g~i~vIg-----------ATt~~E~~~~~ 331 (758)
T PRK11034 282 LFIDEIHTIIGAGAAS------GGQVDAANLIKPLLSS-------------GKIRVIG-----------STTYQEFSNIF 331 (758)
T ss_pred EEeccHHHHhccCCCC------CcHHHHHHHHHHHHhC-------------CCeEEEe-----------cCChHHHHHHh
Confidence 9999999998765321 1112233333333321 1122222 33332 3
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC---C-cccccchhHHHHHHhCCCCc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT---S-YPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~---~-~~~~~~~~~~~l~~~t~g~~ 232 (256)
..|+++.|||. .+.++.|+ .+++..|++..... . ...-.+..+...++++..++
T Consensus 332 ~~D~AL~rRFq-~I~v~ePs----------~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 332 EKDRALARRFQ-KIDITEPS----------IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred hccHHHHhhCc-EEEeCCCC----------HHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 57999999996 79999999 88888888854422 1 11113466777777766654
No 52
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.56 E-value=3.7e-15 Score=122.66 Aligned_cols=162 Identities=19% Similarity=0.207 Sum_probs=91.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
...+|||||||+||||+|+.||++++. +|...++..+. ....+..++... ....|+||
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~---------~~~~~sg~~i~------k~~dl~~il~~l-------~~~~ILFI 107 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGV---------NFKITSGPAIE------KAGDLAAILTNL-------KEGDILFI 107 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT-----------EEEEECCC--------SCHHHHHHHHT---------TT-EEEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCC---------CeEeccchhhh------hHHHHHHHHHhc-------CCCcEEEE
Confidence 457999999999999999999999976 55666654321 122233444332 25679999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhh---cCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK---KSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~---~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
|||++|... +...|+..|+...- ...|. ++..-++......+ |.+|.....|...
T Consensus 108 DEIHRlnk~---------------~qe~LlpamEd~~idiiiG~g~-~ar~~~~~l~~FTl------igATTr~g~ls~p 165 (233)
T PF05496_consen 108 DEIHRLNKA---------------QQEILLPAMEDGKIDIIIGKGP-NARSIRINLPPFTL------IGATTRAGLLSSP 165 (233)
T ss_dssp CTCCC--HH---------------HHHHHHHHHHCSEEEEEBSSSS-S-BEEEEE----EE------EEEESSGCCTSHC
T ss_pred echhhccHH---------------HHHHHHHHhccCeEEEEecccc-ccceeeccCCCceE------eeeeccccccchh
Confidence 999999754 45677788875432 11111 11111111111111 2233333557778
Q ss_pred HhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 173 VLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 173 i~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
++.||.-...+...+ .+.-.+|++........--.++...++++...|.
T Consensus 166 LrdRFgi~~~l~~Y~----------~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 166 LRDRFGIVLRLEFYS----------EEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp CCTTSSEEEE----T----------HHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred HHhhcceecchhcCC----------HHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 888999877777777 7777888776655544443558888888888874
No 53
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=3.4e-14 Score=139.10 Aligned_cols=172 Identities=12% Similarity=0.180 Sum_probs=115.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhh-hcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL-QSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~-~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
..+++|+||||||||++|+.+|+.+.... .....+.+++.++...+. .++.|+.+..++++++.+.. ...+.|
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~----~~~~~I 283 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA----SPQPII 283 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHh----cCCCeE
Confidence 46789999999999999999999884210 111234567888877765 35778888899999998864 246899
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHH-----HH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENF-----LI 167 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~-----~~ 167 (256)
|||||++.+.+.+... +. . ...+.|+..|+. | .+.+++ +|+. ..
T Consensus 284 LfIDEih~l~~~g~~~--~~--~---d~~n~Lkp~l~~------G-------~l~~Ig-----------aTT~~e~~~~~ 332 (852)
T TIGR03345 284 LFIDEAHTLIGAGGQA--GQ--G---DAANLLKPALAR------G-------ELRTIA-----------ATTWAEYKKYF 332 (852)
T ss_pred EEEeChHHhccCCCcc--cc--c---cHHHHhhHHhhC------C-------CeEEEE-----------ecCHHHHhhhh
Confidence 9999999998765421 11 1 122333333321 1 111222 2222 24
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcC---CCccc-ccchhHHHHHHhCCCCcc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCG---TSYPL-QHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~---~~~~~-~~~~~~~~l~~~t~g~~~ 233 (256)
.+|+|+.|||. .+.++.|+ .+++..|++.... ..... -.+..++.+++++.+++.
T Consensus 333 ~~d~AL~rRf~-~i~v~eps----------~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 333 EKDPALTRRFQ-VVKVEEPD----------EETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred hccHHHHHhCe-EEEeCCCC----------HHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 58999999996 78999999 8888888554442 21112 256899999999998763
No 54
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.55 E-value=2.4e-14 Score=131.83 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=109.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhH-HHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGK-LVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+.++||||||||||+|++++|+++... .++..++++++.++...+...-.. ...++.+. ...+.+|+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~----~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~dlLii 217 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK----NPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEK-------YRSVDVLLI 217 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH-------HhcCCEEEE
Confidence 569999999999999999999998642 135678999998876654332211 11122211 225779999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||++.+..++. ....++..++.+..... .+.+.+ .. .......+++.+.+
T Consensus 218 DDi~~l~~~~~-------------~~~~l~~~~n~l~~~~~--------~iiits-----~~----~p~~l~~l~~~l~S 267 (450)
T PRK00149 218 DDIQFLAGKER-------------TQEEFFHTFNALHEAGK--------QIVLTS-----DR----PPKELPGLEERLRS 267 (450)
T ss_pred ehhhhhcCCHH-------------HHHHHHHHHHHHHHCCC--------cEEEEC-----CC----CHHHHHHHHHHHHh
Confidence 99999854321 22344555554433211 111111 11 01112337788999
Q ss_pred Hhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 176 LLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
||. ..+.++.|+ .+.|.++++..+......-.++.++.|++.+.|+++.
T Consensus 268 Rl~~gl~v~i~~pd----------~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 268 RFEWGLTVDIEPPD----------LETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HhcCCeeEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHH
Confidence 997 478899999 9999999998887654433668999999999998764
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.55 E-value=8.2e-15 Score=142.83 Aligned_cols=146 Identities=22% Similarity=0.337 Sum_probs=94.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc---------hhhccchhHHHHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF---------SKYFSESGKLVQKMFNKIKEAVEY 86 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~---------~~~~g~~~~~~~~~f~~a~~~~~~ 86 (256)
++.++|+||||||||++|+++|+.++. +|+.+++.... ..|.|.....+.+.|..+..
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~---------~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~---- 413 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNR---------KFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT---- 413 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC---------CeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc----
Confidence 347999999999999999999999975 56766654321 24556655566666665542
Q ss_pred cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCC--CCCc--hhhhcccchhhHhhhhcCccCH
Q psy3997 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKST--GLSG--RTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~--g~~g--~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
..| ||||||||.+.+..+. ...+.|++.||....... ...+ -+..++.+ +.+
T Consensus 414 -~~~-villDEidk~~~~~~~-----------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~-----------I~T 469 (775)
T TIGR00763 414 -KNP-LFLLDEIDKIGSSFRG-----------DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF-----------IAT 469 (775)
T ss_pred -CCC-EEEEechhhcCCccCC-----------CHHHHHHHhcCHHhcCccccccCCceeccCCEEE-----------EEe
Confidence 244 8999999999853211 145778888875322110 0000 01112222 235
Q ss_pred HHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 163 ENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 163 t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
+|..+.+++++++||. .+.++.|+ .+.+.+|++.++
T Consensus 470 tN~~~~i~~~L~~R~~-vi~~~~~~----------~~e~~~I~~~~l 505 (775)
T TIGR00763 470 ANSIDTIPRPLLDRME-VIELSGYT----------EEEKLEIAKKYL 505 (775)
T ss_pred cCCchhCCHHHhCCee-EEecCCCC----------HHHHHHHHHHHH
Confidence 6667889999999995 67899888 666666666554
No 56
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.52 E-value=4.5e-14 Score=128.39 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=108.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhH-HHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGK-LVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
...++||||||||||+|++++|+++... .++..++++++.++...+...... .+..+.+.. ..+.+|+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~----~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~dlLi 204 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN----NPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-------RSVDLLL 204 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh----CCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-------HhCCEEE
Confidence 3568999999999999999999998532 134678999988776554322111 111222211 2467999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||++.+..+.. ....++..++.+..... .+.+.+ ... . .....+++.+.
T Consensus 205 iDDi~~l~~~~~-------------~~~~l~~~~n~~~~~~~--------~iiits------~~~--p-~~l~~l~~~l~ 254 (405)
T TIGR00362 205 IDDIQFLAGKER-------------TQEEFFHTFNALHENGK--------QIVLTS------DRP--P-KELPGLEERLR 254 (405)
T ss_pred EehhhhhcCCHH-------------HHHHHHHHHHHHHHCCC--------CEEEec------CCC--H-HHHhhhhhhhh
Confidence 999999864321 22345555554432211 111111 100 1 12234678889
Q ss_pred hHhhh--hhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 175 DLLVE--EKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 175 rRf~~--~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+||.. .+.+++|+ .+.|..+++..+......-.++.++.|++...++++.
T Consensus 255 SRl~~g~~v~i~~pd----------~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 255 SRFEWGLVVDIEPPD----------LETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred hhccCCeEEEeCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 99974 68999999 9999999999887655444669999999999998754
No 57
>KOG0989|consensus
Probab=99.51 E-value=4.5e-14 Score=119.95 Aligned_cols=164 Identities=18% Similarity=0.232 Sum_probs=107.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHH----HhcCC-e
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAV----EYEES-L 90 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~----~~~~~-p 90 (256)
-..+|||||||||||+.|+++|+++..+ ....+.+.+.+.++..+.-++... + +-|.+..... .+... +
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~---~~~~~rvl~lnaSderGisvvr~K--i-k~fakl~~~~~~~~~~~~~~f 130 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCE---QLFPCRVLELNASDERGISVVREK--I-KNFAKLTVLLKRSDGYPCPPF 130 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCc---cccccchhhhcccccccccchhhh--h-cCHHHHhhccccccCCCCCcc
Confidence 4568999999999999999999999752 122456677777765443322111 1 1222222211 11222 3
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
.|++|||+|.|... -.++|.+.||.....+ ++++ .+|+++.|-
T Consensus 131 KiiIlDEcdsmtsd---------------aq~aLrr~mE~~s~~t---------rFiL-------------Icnylsrii 173 (346)
T KOG0989|consen 131 KIIILDECDSMTSD---------------AQAALRRTMEDFSRTT---------RFIL-------------ICNYLSRII 173 (346)
T ss_pred eEEEEechhhhhHH---------------HHHHHHHHHhccccce---------EEEE-------------EcCChhhCC
Confidence 79999999999654 4578888888754322 2333 458888898
Q ss_pred HHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 171 KTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 171 ~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
..+.+|..+-.+=++++ +++. ..++.++..+..--.+..++.++...+|+.+
T Consensus 174 ~pi~SRC~KfrFk~L~d----------~~iv-~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKD----------EDIV-DRLEKIASKEGVDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhhHHHhcCCCcch----------HHHH-HHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Confidence 99999998877777777 5554 4444455444433366889999999999764
No 58
>PRK06893 DNA replication initiation factor; Validated
Probab=99.51 E-value=1.1e-13 Score=116.37 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=97.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
.+.++||||||||||++++++|+++... +....+++.... .....++++. ..+..+|+|
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~------~~~~~y~~~~~~--------~~~~~~~~~~-------~~~~dlLil 97 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN------QRTAIYIPLSKS--------QYFSPAVLEN-------LEQQDLVCL 97 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc------CCCeEEeeHHHh--------hhhhHHHHhh-------cccCCEEEE
Confidence 3468999999999999999999997542 223344444211 0011122222 225679999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH---HHHH
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA---LEKT 172 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~---ld~a 172 (256)
||++.+..... ....+...++........ +...+ .+..+.. ..+.
T Consensus 98 DDi~~~~~~~~-------------~~~~l~~l~n~~~~~~~~--------illit-----------s~~~p~~l~~~~~~ 145 (229)
T PRK06893 98 DDLQAVIGNEE-------------WELAIFDLFNRIKEQGKT--------LLLIS-----------ADCSPHALSIKLPD 145 (229)
T ss_pred eChhhhcCChH-------------HHHHHHHHHHHHHHcCCc--------EEEEe-----------CCCChHHccccchh
Confidence 99999854321 122344555544322100 00011 1111222 3367
Q ss_pred HhhHhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccC
Q psy3997 173 VLDLLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSD 237 (256)
Q Consensus 173 i~rRf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~ 237 (256)
+.+|+. ..+.++.|+ ++.|..+++..+......-.++.++.|++..+|+++...+
T Consensus 146 L~sRl~~g~~~~l~~pd----------~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 146 LASRLTWGEIYQLNDLT----------DEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHHhcCCeeeCCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 888876 577789999 9999999998876544433669999999999998765443
No 59
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=1e-13 Score=136.04 Aligned_cols=171 Identities=18% Similarity=0.236 Sum_probs=112.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh-hhcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~-~~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
..+++|+||||||||++|+++|..+... ......+.+++.++...+. .++.|+.+..++++|+.+.. ...++|
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~----~~~~~I 274 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK----QEGNVI 274 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHH----cCCCeE
Confidence 4579999999999999999999997320 0001124578888887765 45778888889999987654 247899
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHH-----H
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFL-----I 167 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~-----~ 167 (256)
|||||++.+.+.+... +. ....+.|...+.. | .+.+ |.+|+.. .
T Consensus 275 LfIDEih~l~~~~~~~--~~-----~d~~~~lkp~l~~------g-------~l~~-----------IgaTt~~e~r~~~ 323 (857)
T PRK10865 275 LFIDELHTMVGAGKAD--GA-----MDAGNMLKPALAR------G-------ELHC-----------VGATTLDEYRQYI 323 (857)
T ss_pred EEEecHHHhccCCCCc--cc-----hhHHHHhcchhhc------C-------CCeE-----------EEcCCCHHHHHHh
Confidence 9999999998765321 11 1122333222211 1 1112 2233332 3
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC---Ccccc-cchhHHHHHHhCCCCc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT---SYPLQ-HSKHFTELVQSHPGRC 232 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~---~~~~~-~~~~~~~l~~~t~g~~ 232 (256)
.+|+|+.|||. .+.++.|+ .+.+..+++..... ..... .+..+...+.++.+++
T Consensus 324 ~~d~al~rRf~-~i~v~eP~----------~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 324 EKDAALERRFQ-KVFVAEPS----------VEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred hhcHHHHhhCC-EEEeCCCC----------HHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 58999999997 57899999 78888887765532 11122 4577777888888876
No 60
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.48 E-value=3e-13 Score=123.25 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=102.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+.+++|+||||||||++|+++|+.++. .|+.+++... +...++++++.+..... .+...||||
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~---------~~~~l~a~~~-------~~~~ir~ii~~~~~~~~-~g~~~vL~I 98 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDA---------PFEALSAVTS-------GVKDLREVIEEARQRRS-AGRRTILFI 98 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC---------CEEEEecccc-------cHHHHHHHHHHHHHhhh-cCCceEEEE
Confidence 457999999999999999999999854 6788877532 23456677776654321 336789999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.+... ..+.|+..++.-. +.+.. . ++.|....+++++.+
T Consensus 99 DEi~~l~~~---------------~q~~LL~~le~~~-------------iilI~-----a----tt~n~~~~l~~aL~S 141 (413)
T PRK13342 99 DEIHRFNKA---------------QQDALLPHVEDGT-------------ITLIG-----A----TTENPSFEVNPALLS 141 (413)
T ss_pred echhhhCHH---------------HHHHHHHHhhcCc-------------EEEEE-----e----CCCChhhhccHHHhc
Confidence 999998543 2345566555310 11111 0 122444678899999
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC--cc-cccchhHHHHHHhCCCCccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS--YP-LQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~--~~-~~~~~~~~~l~~~t~g~~~~ 234 (256)
|+ ..+.+++++ +++...+++..+... .. .-.++.++.|++.++|+.+.
T Consensus 142 R~-~~~~~~~ls----------~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~ 192 (413)
T PRK13342 142 RA-QVFELKPLS----------EEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARR 192 (413)
T ss_pred cc-eeeEeCCCC----------HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHH
Confidence 99 667788888 666666666665431 11 22457888999999997654
No 61
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=2.5e-13 Score=124.44 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=105.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccch-hHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSES-GKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~-~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+.++||||||||||+|++++|+++... .++..++++++.++...+...- ...+.++.+.. ...+.+|+|
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~----~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~------~~~~dvLlI 200 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY------RKKVDVLLI 200 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHH------HhcCCEEEE
Confidence 469999999999999999999997532 2346789999887765543211 11122222111 125789999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||++.+..... ...+++..++.+...... +.+.+ ... . .....+++.+.+
T Consensus 201 DDi~~l~~~~~-------------~q~elf~~~n~l~~~~k~--------iIits-----d~~---p-~~l~~l~~rL~S 250 (440)
T PRK14088 201 DDVQFLIGKTG-------------VQTELFHTFNELHDSGKQ--------IVICS-----DRE---P-QKLSEFQDRLVS 250 (440)
T ss_pred echhhhcCcHH-------------HHHHHHHHHHHHHHcCCe--------EEEEC-----CCC---H-HHHHHHHHHHhh
Confidence 99998854321 223344444444322110 11100 000 1 122346677888
Q ss_pred Hhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 176 LLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
||. ..+.+++|+ .+.|..|++..+......-.++.++.|++..+++++.
T Consensus 251 R~~~gl~v~i~~pd----------~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 251 RFQMGLVAKLEPPD----------EETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHhcCceEeeCCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHH
Confidence 986 456688999 9999999998886544433568999999999997643
No 62
>KOG2028|consensus
Probab=99.48 E-value=2.6e-13 Score=117.78 Aligned_cols=78 Identities=26% Similarity=0.491 Sum_probs=62.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
-+.++|+||||||||++||.||.....+ ...|+++++. ..+...++.+|+.++.....-.+..|+||
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~------SyrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFi 228 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKH------SYRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFI 228 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCC------ceEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEe
Confidence 3458999999999999999999987542 2356666653 23455799999999988777778899999
Q ss_pred Ccchhhhhhhh
Q psy3997 96 DEIESLTRARE 106 (256)
Q Consensus 96 DEid~l~~~r~ 106 (256)
|||+++....+
T Consensus 229 DEiHRFNksQQ 239 (554)
T KOG2028|consen 229 DEIHRFNKSQQ 239 (554)
T ss_pred HHhhhhhhhhh
Confidence 99999976644
No 63
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=2.9e-13 Score=133.17 Aligned_cols=172 Identities=16% Similarity=0.234 Sum_probs=112.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh-hhcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~-~~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
.++++|+||||||||++++++|+.+... ......+.+++.++...+. .+|.|+.+..++.+|+.+.. ...+.|
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~----~~~~~I 269 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTK----SEGQII 269 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHh----cCCCeE
Confidence 5678999999999999999999987321 0001124578888877765 45778888889999987764 346899
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHH-----H
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFL-----I 167 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~-----~ 167 (256)
|||||++.+.+.+... + .....+.|...+.. | .+.+++ +|+.. .
T Consensus 270 LfIDEih~l~~~g~~~--~-----~~d~~~~Lk~~l~~------g-------~i~~Ig-----------aTt~~e~r~~~ 318 (852)
T TIGR03346 270 LFIDELHTLVGAGKAE--G-----AMDAGNMLKPALAR------G-------ELHCIG-----------ATTLDEYRKYI 318 (852)
T ss_pred EEeccHHHhhcCCCCc--c-----hhHHHHHhchhhhc------C-------ceEEEE-----------eCcHHHHHHHh
Confidence 9999999998654321 1 11223333222211 0 112222 33332 3
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC---ccc-ccchhHHHHHHhCCCCcc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS---YPL-QHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~---~~~-~~~~~~~~l~~~t~g~~~ 233 (256)
.+|+++.|||. .+.++.|+ .+++..|++.+.... ... -.+..+..++.++.+++.
T Consensus 319 ~~d~al~rRf~-~i~v~~p~----------~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 319 EKDAALERRFQ-PVFVDEPT----------VEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred hcCHHHHhcCC-EEEeCCCC----------HHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 47999999996 47899999 788888877654321 111 245788899999988763
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.47 E-value=3.3e-13 Score=119.00 Aligned_cols=171 Identities=14% Similarity=0.146 Sum_probs=106.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHH-HH-hcCCeEEEE
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEA-VE-YEESLVCLL 94 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-~~-~~~~p~Ii~ 94 (256)
+.+|||||||||||++|+++|+++..+. ....++++++++..+ ...++...+..... .. ....+.|++
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~----~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kvii 104 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPN----YKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVI 104 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhccc----Cccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEE
Confidence 4589999999999999999999984211 123467777765422 11233332221110 00 013467999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||+|.+... -.+.|+..|+.....+ .+++ .+|....+.++++
T Consensus 105 iDE~d~lt~~---------------aq~aL~~~lE~~~~~t---------~~il-------------~~n~~~~i~~~L~ 147 (319)
T PLN03025 105 LDEADSMTSG---------------AQQALRRTMEIYSNTT---------RFAL-------------ACNTSSKIIEPIQ 147 (319)
T ss_pred EechhhcCHH---------------HHHHHHHHHhcccCCc---------eEEE-------------EeCCccccchhHH
Confidence 9999998643 2355666666432211 1111 2233455667888
Q ss_pred hHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccc
Q psy3997 175 DLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSF 245 (256)
Q Consensus 175 rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~ 245 (256)
+|+. .+.++.|+ +++....++..+......-.+..++.+++...||.+..-+.....+.|
T Consensus 148 SRc~-~i~f~~l~----------~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~ 207 (319)
T PLN03025 148 SRCA-IVRFSRLS----------DQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSG 207 (319)
T ss_pred Hhhh-cccCCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 8874 67888888 666666666666554433356889999999999987766655544433
No 65
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=3.4e-13 Score=122.05 Aligned_cols=107 Identities=26% Similarity=0.366 Sum_probs=73.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-hhhccchhHH-HHHHHHHHHHHHHhcCCeE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-SKYFSESGKL-VQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-~~~~g~~~~~-~~~~f~~a~~~~~~~~~p~ 91 (256)
.+..++||+||||||||++|+++|+.++. +|+.++++.+. ..|+|..... +..++..+...+. ...++
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~---------pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~-~a~~g 175 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLARILDV---------PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE-KAQRG 175 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCC---------CceecchhhcccCCcccchHHHHHHHHHHhccccHH-HcCCc
Confidence 34678999999999999999999999865 67888988765 3566764333 3444443221111 23678
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~ 131 (256)
||||||||.+.+++....... +-.+..+.+.||+.||+-
T Consensus 176 Ii~iDEIdkl~~~~~~~~~~~-d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 176 IVYIDEIDKIARKSENPSITR-DVSGEGVQQALLKILEGT 214 (412)
T ss_pred EEEEechhhhccccCCCCcCC-CcccHHHHHHHHHHHhcC
Confidence 999999999987643211111 112235889999999864
No 66
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.47 E-value=2.2e-13 Score=133.67 Aligned_cols=172 Identities=18% Similarity=0.254 Sum_probs=110.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhh-hhcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~-~~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+++++|+||||||||++|+.+|+.+... ......+.+++.++...+. .+|.|+.+..++++++.+... .+.
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~-----~~~ 273 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN-----NNI 273 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc-----CCe
Confidence 46789999999999999999999997421 1111235689999998776 467888889999999988742 789
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHH-----
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFL----- 166 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~----- 166 (256)
||||||+|.+...+... +. . .+.+-|...+.. | .+.+++ +|+..
T Consensus 274 ILfiDEih~l~~~g~~~--g~--~---~~a~lLkp~l~r------g-------~l~~Ig-----------aTt~~ey~~~ 322 (821)
T CHL00095 274 ILVIDEVHTLIGAGAAE--GA--I---DAANILKPALAR------G-------ELQCIG-----------ATTLDEYRKH 322 (821)
T ss_pred EEEEecHHHHhcCCCCC--Cc--c---cHHHHhHHHHhC------C-------CcEEEE-----------eCCHHHHHHH
Confidence 99999999998765321 11 1 122333222221 0 111222 22222
Q ss_pred HHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcC----CCcccccchhHHHHHHhCCCCcc
Q psy3997 167 IALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCG----TSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 167 ~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~----~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
...|+++.+||.. +.++.|+ .++...|++.... .....-.++.+..+++++.+++.
T Consensus 323 ie~D~aL~rRf~~-I~v~ep~----------~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 323 IEKDPALERRFQP-VYVGEPS----------VEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred HhcCHHHHhcceE-EecCCCC----------HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 3468999999975 5777787 5554455442221 11111255788899999988764
No 67
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=4.5e-13 Score=120.83 Aligned_cols=106 Identities=26% Similarity=0.406 Sum_probs=71.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-hhhccch-hHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-SKYFSES-GKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
+.++||+||||||||++|+++|+.++. +|..++++.+. ..|+|.. +..+..++..+...+ ....++||
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~---------pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l-~~a~~gIV 185 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNV---------PFAIADATTLTEAGYVGEDVENILLKLLQAADYDV-EKAQKGII 185 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCC---------CeEEechhhccccccccccHHHHHHHHHHhCcccH-HhcccceE
Confidence 568999999999999999999999865 66778877764 3467764 333444444322111 12367899
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchh
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~ 132 (256)
||||+|.+.+++.......+ -.+..+.+.||+.|++..
T Consensus 186 ~lDEIdkl~~~~~~~s~~~d-vsg~~vq~~LL~iLeG~~ 223 (413)
T TIGR00382 186 YIDEIDKISRKSENPSITRD-VSGEGVQQALLKIIEGTV 223 (413)
T ss_pred Eecccchhchhhcccccccc-ccchhHHHHHHHHhhccc
Confidence 99999999886543221111 111258899999998754
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=99.45 E-value=2.4e-13 Score=126.18 Aligned_cols=164 Identities=18% Similarity=0.256 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc-CCeEEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE-ESLVCLL 94 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~-~~p~Ii~ 94 (256)
++.+|||||||||||++|+++|++++. .++++++++... ...++.+...+....... ..+.||+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~---------~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIi 103 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW---------EVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLIL 103 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC---------CEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEE
Confidence 788999999999999999999999965 678998876432 123444433333211111 2578999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH-HH
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK-TV 173 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~-ai 173 (256)
|||+|.+..... ...++.++..++... ..+.+ ++|.+..+.. .+
T Consensus 104 IDEaD~L~~~~d-----------~~~~~aL~~~l~~~~-----------~~iIl-------------i~n~~~~~~~k~L 148 (482)
T PRK04195 104 LDEVDGIHGNED-----------RGGARAILELIKKAK-----------QPIIL-------------TANDPYDPSLREL 148 (482)
T ss_pred EecCcccccccc-----------hhHHHHHHHHHHcCC-----------CCEEE-------------eccCccccchhhH
Confidence 999999864210 124466666665211 01111 1222233333 44
Q ss_pred hhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCc
Q psy3997 174 LDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDST 240 (256)
Q Consensus 174 ~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~ 240 (256)
++| ...+.|+.|+ .++...+++..+......-.+..++.|++.+.||++.+-+...
T Consensus 149 rsr-~~~I~f~~~~----------~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq 204 (482)
T PRK04195 149 RNA-CLMIEFKRLS----------TRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQ 204 (482)
T ss_pred hcc-ceEEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444 4568888888 7777888887876554443568999999999998876655443
No 69
>PRK08727 hypothetical protein; Validated
Probab=99.45 E-value=7.1e-13 Score=111.76 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=98.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
...++|+||+|||||++++++|+++.. .+....+++..++.. .+.+.++.. ....+|+|
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~------~~~~~~y~~~~~~~~--------~~~~~~~~l-------~~~dlLiI 99 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQ------AGRSSAYLPLQAAAG--------RLRDALEAL-------EGRSLVAL 99 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEeHHHhhh--------hHHHHHHHH-------hcCCEEEE
Confidence 345999999999999999999998753 234556665433221 222333332 25679999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||++.+..... ....++..++....... .+.+.+ ... . .-...+++.+.+
T Consensus 100 DDi~~l~~~~~-------------~~~~lf~l~n~~~~~~~--------~vI~ts------~~~--p-~~l~~~~~dL~S 149 (233)
T PRK08727 100 DGLESIAGQRE-------------DEVALFDFHNRARAAGI--------TLLYTA------RQM--P-DGLALVLPDLRS 149 (233)
T ss_pred eCcccccCChH-------------HHHHHHHHHHHHHHcCC--------eEEEEC------CCC--h-hhhhhhhHHHHH
Confidence 99998864321 11233344444322110 011111 110 1 111335788899
Q ss_pred Hhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 176 LLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 176 Rf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
||. ..+.++.|+ .+.|.++++..+......-.++.++.|++.++|+++..
T Consensus 150 Rl~~~~~~~l~~~~----------~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLD----------DVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 985 567788888 89999999986654433335699999999999987654
No 70
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=8e-13 Score=121.02 Aligned_cols=167 Identities=15% Similarity=0.154 Sum_probs=104.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeC
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLID 96 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iD 96 (256)
+.++||||||+|||+|++++|+++.. .+..++++++.++...+...-...-...|... ...+.+|+||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~------~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~------~~~~dvLiID 209 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE------SGGKILYVRSELFTEHLVSAIRSGEMQRFRQF------YRNVDALFIE 209 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH------cccCCEEEEc
Confidence 56999999999999999999999853 24578888887665433211100000112211 2367799999
Q ss_pred cchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhH
Q psy3997 97 EIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDL 176 (256)
Q Consensus 97 Eid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rR 176 (256)
|++.+..+.. ....+...++.+.... ..+.+.+ .. ...-...+++.+.+|
T Consensus 210 Diq~l~~k~~-------------~qeelf~l~N~l~~~~--------k~IIlts-----~~----~p~~l~~l~~rL~SR 259 (445)
T PRK12422 210 DIEVFSGKGA-------------TQEEFFHTFNSLHTEG--------KLIVISS-----TC----APQDLKAMEERLISR 259 (445)
T ss_pred chhhhcCChh-------------hHHHHHHHHHHHHHCC--------CcEEEec-----CC----CHHHHhhhHHHHHhh
Confidence 9999854321 2223333333332111 0111111 00 011224578899999
Q ss_pred hh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 177 LV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 177 f~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
|. ..+.+++|+ .+.|..+++..+......-.++.++.|++..+++++..
T Consensus 260 ~~~Gl~~~l~~pd----------~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L 310 (445)
T PRK12422 260 FEWGIAIPLHPLT----------KEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSL 310 (445)
T ss_pred hcCCeEEecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 96 677788888 88999999988876554435688899999999987543
No 71
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.44 E-value=7.5e-13 Score=127.23 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=103.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
..+++||||||||||++|+++|+.++. +|+.+++... ....+++.++.+...........+|||
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~---------~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~I 115 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRA---------HFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFI 115 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC---------cceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEE
Confidence 347899999999999999999998753 6677776531 122355666665544433446779999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||||.+... ..+.|+..++.- .+.+.+ . +++|....+++++.+
T Consensus 116 DEIh~Ln~~---------------qQdaLL~~lE~g-------------~IiLI~-----a----TTenp~~~l~~aL~S 158 (725)
T PRK13341 116 DEVHRFNKA---------------QQDALLPWVENG-------------TITLIG-----A----TTENPYFEVNKALVS 158 (725)
T ss_pred eChhhCCHH---------------HHHHHHHHhcCc-------------eEEEEE-----e----cCCChHhhhhhHhhc
Confidence 999998543 234455554421 111111 0 122444568889998
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcC-------CCcccccchhHHHHHHhCCCCcccccC
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCG-------TSYPLQHSKHFTELVQSHPGRCKVTSD 237 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~-------~~~~~~~~~~~~~l~~~t~g~~~~~~~ 237 (256)
|.. .+.+++++ .+.+..+++.++. .....-.+..++.|++..+||++..-+
T Consensus 159 R~~-v~~l~pLs----------~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln 216 (725)
T PRK13341 159 RSR-LFRLKSLS----------DEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLN 216 (725)
T ss_pred ccc-ceecCCCC----------HHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHH
Confidence 864 57788888 6777777777765 222222458889999999998865443
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=6.6e-13 Score=122.24 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
|.++||+||||||||++|+++|+.++..... ......+++++++.- .+...++++.+.+
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~ 109 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAV 109 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHH
Confidence 5678999999999999999999998642100 001124566665321 1223456665554
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
...- ......||+|||+|.|... ..+.|+..|+..... +.+..
T Consensus 110 ~~~p-~~~~~kVvIIDE~h~Lt~~---------------a~~~LLk~LE~p~~~-----------vv~Il---------- 152 (472)
T PRK14962 110 GYRP-MEGKYKVYIIDEVHMLTKE---------------AFNALLKTLEEPPSH-----------VVFVL---------- 152 (472)
T ss_pred hhCh-hcCCeEEEEEEChHHhHHH---------------HHHHHHHHHHhCCCc-----------EEEEE----------
Confidence 4211 1235679999999998532 456777777653211 11111
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+++.+..+.+++.+|+. .+.+..++ +++...+++..+......-.+..++.|++.+.|+.+..
T Consensus 153 -attn~~kl~~~L~SR~~-vv~f~~l~----------~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~a 215 (472)
T PRK14962 153 -ATTNLEKVPPTIISRCQ-VIEFRNIS----------DELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDA 215 (472)
T ss_pred -EeCChHhhhHHHhcCcE-EEEECCcc----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 22234578899999986 67788887 56656666666543332225588999999999987643
No 73
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=9.3e-13 Score=123.17 Aligned_cols=168 Identities=14% Similarity=0.159 Sum_probs=108.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeC
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLID 96 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iD 96 (256)
+.++|||++|||||+|++++|+++... ..+..++++++.++...+.........+.|.. . ...+.+|+||
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~----~~g~~V~Yitaeef~~el~~al~~~~~~~f~~---~---y~~~DLLlID 384 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL----YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR---R---YREMDILLVD 384 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH---H---hhcCCEEEEe
Confidence 459999999999999999999998531 13457899999887766543221111112221 1 2367899999
Q ss_pred cchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhH
Q psy3997 97 EIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDL 176 (256)
Q Consensus 97 Eid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rR 176 (256)
|++.+..+.. ....|+..++.+..... .+.+.+ .. ...++ ..+++.+.+|
T Consensus 385 DIq~l~gke~-------------tqeeLF~l~N~l~e~gk--------~IIITS-----d~---~P~eL-~~l~~rL~SR 434 (617)
T PRK14086 385 DIQFLEDKES-------------TQEEFFHTFNTLHNANK--------QIVLSS-----DR---PPKQL-VTLEDRLRNR 434 (617)
T ss_pred hhccccCCHH-------------HHHHHHHHHHHHHhcCC--------CEEEec-----CC---ChHhh-hhccHHHHhh
Confidence 9999865422 22344444444433211 111111 11 01112 3577889999
Q ss_pred hhh--hhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 177 LVE--EKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 177 f~~--~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
|.. .+.+..|+ .+.|..|++..+......-.++.++.|++..+++++.
T Consensus 435 f~~GLvv~I~~PD----------~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 435 FEWGLITDVQPPE----------LETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred hhcCceEEcCCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHH
Confidence 974 55888899 9999999998887665554668999999998887643
No 74
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.43 E-value=7.9e-13 Score=110.58 Aligned_cols=160 Identities=13% Similarity=0.112 Sum_probs=96.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
..+..++|+||||||||++|+++++.+.. ...++++++++++.... ..++... ..+.+|
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~------~~~~~~~i~~~~~~~~~--------~~~~~~~-------~~~~lL 94 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEE------RGKSAIYLPLAELAQAD--------PEVLEGL-------EQADLV 94 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh------cCCcEEEEeHHHHHHhH--------HHHHhhc-------ccCCEE
Confidence 34678999999999999999999998753 24578889987764321 2233222 244689
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHH
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTV 173 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai 173 (256)
+|||+|.+..... ....+...++....... .+.+.+ +... ... ...++.+
T Consensus 95 vIDdi~~l~~~~~-------------~~~~L~~~l~~~~~~~~--------~iIits------~~~~--~~~-~~~~~~L 144 (226)
T TIGR03420 95 CLDDVEAIAGQPE-------------WQEALFHLYNRVREAGG--------RLLIAG------RAAP--AQL-PLRLPDL 144 (226)
T ss_pred EEeChhhhcCChH-------------HHHHHHHHHHHHHHcCC--------eEEEEC------CCCh--HHC-CcccHHH
Confidence 9999999853210 12334444443322110 111111 1000 000 1112567
Q ss_pred hhHhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 174 LDLLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 174 ~rRf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
.+|+. ..+.+|+|+ ++++..+++.++......-.++.++.|++..+|+++.
T Consensus 145 ~~r~~~~~~i~l~~l~----------~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~ 197 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLS----------DEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGS 197 (226)
T ss_pred HHHHhcCeeEecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 77875 677888888 7777777776654333222558889999989987643
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.2e-12 Score=119.47 Aligned_cols=164 Identities=17% Similarity=0.233 Sum_probs=100.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..+||+||||||||++|+.+|+.++..... ......++++++.. ..+...++++.+.+
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l 113 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNV 113 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHH
Confidence 4568999999999999999999998753100 00011345555421 11233456665555
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
...- ......|+||||+|.|.. ...++||+.|++-.. .+.++
T Consensus 114 ~~~p-~~g~~KV~IIDEah~Ls~---------------~A~NALLKtLEEPp~-----------~viFI----------- 155 (484)
T PRK14956 114 KFAP-MGGKYKVYIIDEVHMLTD---------------QSFNALLKTLEEPPA-----------HIVFI----------- 155 (484)
T ss_pred Hhhh-hcCCCEEEEEechhhcCH---------------HHHHHHHHHhhcCCC-----------ceEEE-----------
Confidence 4221 134567999999999853 267888999876321 11121
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
.+++-++.|.++|++|+... .|..++ .+.-.+.++..+......-.+..++.|++...|+.+-
T Consensus 156 LaTte~~kI~~TI~SRCq~~-~f~~ls----------~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 156 LATTEFHKIPETILSRCQDF-IFKKVP----------LSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred eecCChhhccHHHHhhhhee-eecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHH
Confidence 13334577889999998654 444444 3333344454555443333568899999999998643
No 76
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=8.3e-13 Score=119.53 Aligned_cols=175 Identities=21% Similarity=0.290 Sum_probs=107.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh----------hcc----chhHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK----------YFS----ESGKLVQKMFNKI 80 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~----------~~g----~~~~~~~~~f~~a 80 (256)
.+.+++++||||||||++++.+++++.... ....+++++|....+. ..+ .......+++..+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~----~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 129 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIA----VKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKI 129 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhc----CCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 357799999999999999999999885421 2467899998644221 111 1122345556665
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
.+.+...+.+.||+|||+|.+..... ..++..+++.++..... ++.++. .++.
T Consensus 130 ~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~~~~~~~----------~v~vI~-----i~~~- 182 (394)
T PRK00411 130 AEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAHEEYPGA----------RIGVIG-----ISSD- 182 (394)
T ss_pred HHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhhhccCCC----------eEEEEE-----EECC-
Confidence 55555566789999999999972111 13667776666544211 111111 1111
Q ss_pred CHHHHHHHHHHHHhhHhh-hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC--cccccchhHHHHHHhC---CCCc
Q psy3997 161 SMENFLIALEKTVLDLLV-EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS--YPLQHSKHFTELVQSH---PGRC 232 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~-~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~--~~~~~~~~~~~l~~~t---~g~~ 232 (256)
.+..+.+++.+.+||. ..+.+++++ .++...+++..+... ...-.+..++.+++.+ .|++
T Consensus 183 --~~~~~~l~~~~~s~~~~~~i~f~py~----------~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 183 --LTFLYILDPRVKSVFRPEEIYFPPYT----------ADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred --cchhhhcCHHHHhcCCcceeecCCCC----------HHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 2333457777777775 567888888 777777777665321 1122456777887777 6665
No 77
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=1.5e-12 Score=116.66 Aligned_cols=181 Identities=18% Similarity=0.208 Sum_probs=101.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----------c--cc----hhHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----------F--SE----SGKLVQKMFN 78 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----------~--g~----~~~~~~~~f~ 78 (256)
.+.+++++||||||||++++++++.+............+++++|....+.+ . |. ......+++.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 118 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFR 118 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHH
Confidence 357899999999999999999999886422111112578899986543211 0 11 1111223344
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcC
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 158 (256)
.....+...+.+.||+|||+|.+.... ..++..++...+...... .++.++. .++
T Consensus 119 ~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~~l~~~~~~~~~~~--------~~v~lI~-----i~n 173 (365)
T TIGR02928 119 RLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLYQLSRARSNGDLDN--------AKVGVIG-----ISN 173 (365)
T ss_pred HHHHHHHhcCCeEEEEECchhhhccCC------------cHHHHhHhccccccCCCC--------CeEEEEE-----EEC
Confidence 433333335578899999999997211 124455544421111000 1111111 112
Q ss_pred ccCHHHHHHHHHHHHhhHhh-hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC---Ccccccch---hHHHHHHhCCCC
Q psy3997 159 SVSMENFLIALEKTVLDLLV-EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT---SYPLQHSK---HFTELVQSHPGR 231 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~rRf~-~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~---~~~~~~~~---~~~~l~~~t~g~ 231 (256)
.. ++.+.+++.+.+||. ..+.+++++ .++...++...+.. .... .++ .+..++..+.|+
T Consensus 174 ~~---~~~~~l~~~~~s~~~~~~i~f~p~~----------~~e~~~il~~r~~~~~~~~~~-~~~~l~~i~~~~~~~~Gd 239 (365)
T TIGR02928 174 DL---KFRENLDPRVKSSLCEEEIIFPPYD----------AEELRDILENRAEKAFYDGVL-DDGVIPLCAALAAQEHGD 239 (365)
T ss_pred Cc---chHhhcCHHHhccCCcceeeeCCCC----------HHHHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHHhcCC
Confidence 12 334567888888886 668888888 77777777765531 1112 223 344556666787
Q ss_pred ccc
Q psy3997 232 CKV 234 (256)
Q Consensus 232 ~~~ 234 (256)
.+.
T Consensus 240 ~R~ 242 (365)
T TIGR02928 240 ARK 242 (365)
T ss_pred HHH
Confidence 644
No 78
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.41 E-value=1.8e-12 Score=109.39 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=94.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+..++||||||||||++++++|+++.. .+..+.+++...... ...++.+... ...+|+|
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~v~y~~~~~~~~--------~~~~~~~~~~-------~~dllii 103 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ------RGRAVGYVPLDKRAW--------FVPEVLEGME-------QLSLVCI 103 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEEHHHHhh--------hhHHHHHHhh-------hCCEEEE
Confidence 467999999999999999999998764 133455555543211 1112222221 3358999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH---HHHH
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA---LEKT 172 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~---ld~a 172 (256)
||++.+..+.. ....+...++........ .+.. + .++-+.. +.+.
T Consensus 104 Ddi~~~~~~~~-------------~~~~lf~l~n~~~e~g~~-------~li~-------t-----s~~~p~~l~~~~~~ 151 (235)
T PRK08084 104 DNIECIAGDEL-------------WEMAIFDLYNRILESGRT-------RLLI-------T-----GDRPPRQLNLGLPD 151 (235)
T ss_pred eChhhhcCCHH-------------HHHHHHHHHHHHHHcCCC-------eEEE-------e-----CCCChHHcCcccHH
Confidence 99999854321 112222333322211100 0111 0 1111122 4688
Q ss_pred HhhHhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 173 VLDLLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 173 i~rRf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+++|+. ..+.+..|+ .+.|.+++++........-.++.++.|++..+++++..
T Consensus 152 L~SRl~~g~~~~l~~~~----------~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 152 LASRLDWGQIYKLQPLS----------DEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHhCCceeeecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHH
Confidence 899997 778888888 78888888775544333336699999999999987544
No 79
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.41 E-value=4.3e-13 Score=119.95 Aligned_cols=57 Identities=21% Similarity=0.467 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch-hhcc-chhHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS-KYFS-ESGKLVQKMFNKI 80 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~-~~~g-~~~~~~~~~f~~a 80 (256)
+|+++||+||||||||++|+++|..++. +|+.+++..+.. .|+| ..+..++.+|..|
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~---------~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANA---------PFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC---------eEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 4689999999999999999999999965 789999887764 6778 4667777777766
No 80
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.41 E-value=4.9e-13 Score=112.69 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=94.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
.-.+|||||||.||||+|+-+|+++|. ++...++..+.. ...+..++.. .....|+||
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgv---------n~k~tsGp~leK------~gDlaaiLt~-------Le~~DVLFI 109 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGV---------NLKITSGPALEK------PGDLAAILTN-------LEEGDVLFI 109 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcC---------CeEecccccccC------hhhHHHHHhc-------CCcCCeEEE
Confidence 456999999999999999999999986 333333332211 2223334433 236689999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhc---CCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK---STGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~---~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
|||+++.+. +-..|.-.|+.+.-. ..|. ++...++...... -|.+|-....|-.-
T Consensus 110 DEIHrl~~~---------------vEE~LYpaMEDf~lDI~IG~gp-~Arsv~ldLppFT------LIGATTr~G~lt~P 167 (332)
T COG2255 110 DEIHRLSPA---------------VEEVLYPAMEDFRLDIIIGKGP-AARSIRLDLPPFT------LIGATTRAGMLTNP 167 (332)
T ss_pred ehhhhcChh---------------HHHHhhhhhhheeEEEEEccCC-ccceEeccCCCee------Eeeeccccccccch
Confidence 999999754 344555666654320 0111 0111111111111 12244444557777
Q ss_pred HhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 173 VLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 173 i~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
++.||.....+...+ .+.-.+|...........-.++...++++...|
T Consensus 168 LrdRFGi~~rlefY~----------~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG 215 (332)
T COG2255 168 LRDRFGIIQRLEFYT----------VEELEEIVKRSAKILGIEIDEEAALEIARRSRG 215 (332)
T ss_pred hHHhcCCeeeeecCC----------HHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC
Confidence 888999887777777 666666666555433333344667777777666
No 81
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.38 E-value=4.4e-12 Score=121.31 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-ccccceEEEEeccccchhh----------ccc-------hhHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-KYKITEFIEINSHSLFSKY----------FSE-------SGKLVQKMFN 78 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~-~~~~~~~~~v~~~~l~~~~----------~g~-------~~~~~~~~f~ 78 (256)
..++++|+||||||++++.+.+++...... ..+...+++++|..+...+ .+. +...+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 345799999999999999999988532211 1123678999996543221 011 1122334443
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcC
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 158 (256)
.... ......||+|||||.|....+ .++-.|.+.... .. ..+.+++ -++
T Consensus 862 ~L~k---~~r~v~IIILDEID~L~kK~Q------------DVLYnLFR~~~~---s~--------SKLiLIG-----ISN 910 (1164)
T PTZ00112 862 QNKK---DNRNVSILIIDEIDYLITKTQ------------KVLFTLFDWPTK---IN--------SKLVLIA-----ISN 910 (1164)
T ss_pred hhhc---ccccceEEEeehHhhhCccHH------------HHHHHHHHHhhc---cC--------CeEEEEE-----ecC
Confidence 3321 133467999999999975321 244444443221 10 1222322 111
Q ss_pred ccCHHHHHHHHHHHHhhHhhh-hhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHH---hCCCCcc
Q psy3997 159 SVSMENFLIALEKTVLDLLVE-EKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQ---SHPGRCK 233 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~rRf~~-~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~---~t~g~~~ 233 (256)
..+++..+++.+.+||.. ++.|++++ .+++..|++.-+......-.+..++.+|+ ...||++
T Consensus 911 ---dlDLperLdPRLRSRLg~eeIvF~PYT----------aEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDAR 976 (1164)
T PTZ00112 911 ---TMDLPERLIPRCRSRLAFGRLVFSPYK----------GDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIR 976 (1164)
T ss_pred ---chhcchhhhhhhhhccccccccCCCCC----------HHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHH
Confidence 235667788899999874 48888888 88888888876654322224566777776 5556653
No 82
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.8e-12 Score=119.31 Aligned_cols=164 Identities=19% Similarity=0.230 Sum_probs=103.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhh--------------------hcccccceEEEEeccccchhhccchhHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL--------------------QSKYKITEFIEINSHSLFSKYFSESGKLVQK 75 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~--------------------~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 75 (256)
+..+||+||+|||||++|+.+|+.++..- ........+++++..+- .+...+++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIRe 111 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQ 111 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHH
Confidence 56789999999999999999999997510 00001124666665421 12334666
Q ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhh
Q psy3997 76 MFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYI 155 (256)
Q Consensus 76 ~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~ 155 (256)
+.+.+... ....+..|+||||+|.|.. .-.|.||+.||+-.... .|
T Consensus 112 Lie~~~~~-P~~gr~KViIIDEah~Ls~---------------~AaNALLKTLEEPP~~v-----------~F------- 157 (700)
T PRK12323 112 LLDKAVYA-PTAGRFKVYMIDEVHMLTN---------------HAFNAMLKTLEEPPEHV-----------KF------- 157 (700)
T ss_pred HHHHHHhc-hhcCCceEEEEEChHhcCH---------------HHHHHHHHhhccCCCCc-----------eE-------
Confidence 66554432 1234567999999999953 25689999988743211 11
Q ss_pred hcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 156 SNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 156 ~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
|..|+.+..|.+.|++|+ ..+.|..++ .++..+.++..++.....-.+..++.|++.+.|+.+.
T Consensus 158 ----ILaTtep~kLlpTIrSRC-q~f~f~~ls----------~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 158 ----ILATTDPQKIPVTVLSRC-LQFNLKQMP----------PGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRD 221 (700)
T ss_pred ----EEEeCChHhhhhHHHHHH-HhcccCCCC----------hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 123445577888999998 455666666 4444444454554333322446688899999997753
No 83
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.38 E-value=1e-12 Score=109.80 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchh-HHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG-KLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~-~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
..+++|||+|+|||+|++++++++... .+...++++++.++...+...-. ..+.++. .......+|+|
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~----~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~-------~~~~~~DlL~i 103 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQ----HPGKRVVYLSAEEFIREFADALRDGEIEEFK-------DRLRSADLLII 103 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHH----CTTS-EEEEEHHHHHHHHHHHHHTTSHHHHH-------HHHCTSSEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhc----cccccceeecHHHHHHHHHHHHHcccchhhh-------hhhhcCCEEEE
Confidence 358999999999999999999998642 24568899998877655422111 0111111 12336679999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
|+++.+..+. +....+...++.+..... .+.+.+ ...+- ++ ..+++-+.+
T Consensus 104 DDi~~l~~~~-------------~~q~~lf~l~n~~~~~~k--------~li~ts-----~~~P~---~l-~~~~~~L~S 153 (219)
T PF00308_consen 104 DDIQFLAGKQ-------------RTQEELFHLFNRLIESGK--------QLILTS-----DRPPS---EL-SGLLPDLRS 153 (219)
T ss_dssp ETGGGGTTHH-------------HHHHHHHHHHHHHHHTTS--------EEEEEE-----SS-TT---TT-TTS-HHHHH
T ss_pred ecchhhcCch-------------HHHHHHHHHHHHHHhhCC--------eEEEEe-----CCCCc---cc-cccChhhhh
Confidence 9999986542 244566666666554321 111111 11111 11 235677889
Q ss_pred Hhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 176 LLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
||. ..+.+..|+ .+.|.++++.........-.++.++.|++..+++++.
T Consensus 154 Rl~~Gl~~~l~~pd----------~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~ 204 (219)
T PF00308_consen 154 RLSWGLVVELQPPD----------DEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRE 204 (219)
T ss_dssp HHHCSEEEEE--------------HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHH
T ss_pred hHhhcchhhcCCCC----------HHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHH
Confidence 998 477888899 9999999998886655555679999999999887654
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=2.8e-12 Score=121.68 Aligned_cols=163 Identities=17% Similarity=0.251 Sum_probs=103.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhh---------------cccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ---------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~---------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..+||+||+|||||++++.+|+.++.... .......+++++..+- .+...++++.+.+
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a 111 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERA 111 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHH
Confidence 567899999999999999999999974310 0011224666665421 1223456666554
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... .......|+||||+|.|.. .-.|.||+.|++..... .| |
T Consensus 112 ~~~-P~~gr~KVIIIDEah~LT~---------------~A~NALLKtLEEPP~~v-----------~F-----------I 153 (830)
T PRK07003 112 VYA-PVDARFKVYMIDEVHMLTN---------------HAFNAMLKTLEEPPPHV-----------KF-----------I 153 (830)
T ss_pred Hhc-cccCCceEEEEeChhhCCH---------------HHHHHHHHHHHhcCCCe-----------EE-----------E
Confidence 421 1123457999999999843 25688999998754211 11 1
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.+++..+.|-..|++|+. ++.|...+ .++-...++..++.....-.+..++.|++...|+++
T Consensus 154 LaTtd~~KIp~TIrSRCq-~f~Fk~Ls----------~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 154 LATTDPQKIPVTVLSRCL-QFNLKQMP----------AGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred EEECChhhccchhhhheE-EEecCCcC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 133445677788999985 44455555 444455556566544433356889999999999775
No 85
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.37 E-value=1.9e-12 Score=114.63 Aligned_cols=169 Identities=14% Similarity=0.157 Sum_probs=100.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-------------ccch---hHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-------------FSES---GKLVQKMFNKI 80 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-------------~g~~---~~~~~~~f~~a 80 (256)
+.++|+||||||||++|+++|+++... ....++++++++++.... .+.. .......|+.+
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGD----PWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHV 112 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCc----ccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHH
Confidence 369999999999999999999998531 113457888887653221 1110 01112333332
Q ss_pred HHHHHh----cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhh
Q psy3997 81 KEAVEY----EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYIS 156 (256)
Q Consensus 81 ~~~~~~----~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~ 156 (256)
.+.... ...+.+|+|||+|.+... ..+.|...++.....+ .+.+
T Consensus 113 ~~~~~~~~~~~~~~~vlilDe~~~l~~~---------------~~~~L~~~le~~~~~~---------~~Il-------- 160 (337)
T PRK12402 113 LKEYASYRPLSADYKTILLDNAEALRED---------------AQQALRRIMEQYSRTC---------RFII-------- 160 (337)
T ss_pred HHHHHhcCCCCCCCcEEEEeCcccCCHH---------------HHHHHHHHHHhccCCC---------eEEE--------
Confidence 222111 134569999999988432 2345555565432111 1111
Q ss_pred cCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccccc
Q psy3997 157 NNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTS 236 (256)
Q Consensus 157 ~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~ 236 (256)
+++.+..+.+.+.+|+ ..+.+++|+ .++...+++..+......-.+..++.|++.++|+++...
T Consensus 161 -----~~~~~~~~~~~L~sr~-~~v~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 161 -----ATRQPSKLIPPIRSRC-LPLFFRAPT----------DDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred -----EeCChhhCchhhcCCc-eEEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 1112234456677776 457778888 677777777776554443356899999999999886654
Q ss_pred C
Q psy3997 237 D 237 (256)
Q Consensus 237 ~ 237 (256)
+
T Consensus 225 ~ 225 (337)
T PRK12402 225 L 225 (337)
T ss_pred H
Confidence 4
No 86
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.36 E-value=8.5e-13 Score=118.12 Aligned_cols=56 Identities=20% Similarity=0.490 Sum_probs=47.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch-hhcc-chhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS-KYFS-ESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~-~~~g-~~~~~~~~~f~~a 80 (256)
|.++||+||||||||++|+++|+.++. +|+.++++.+.. .|+| ..+..++++|..|
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~---------~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANA---------PFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC---------hheeecchhhccCCcccCCHHHHHHHHHHHH
Confidence 689999999999999999999999965 679999987775 5888 4456677777777
No 87
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=6.5e-12 Score=115.36 Aligned_cols=173 Identities=12% Similarity=0.118 Sum_probs=108.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeC
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLID 96 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iD 96 (256)
+.++|||++|||||+|++++++++... .++..++++++.++...+...-.... ..+..... ....+.+|+||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~----~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~---~~~~~dvLiID 213 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESN----FSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKN---EICQNDVLIID 213 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHH---HhccCCEEEEe
Confidence 569999999999999999999987531 14568899999887766543211110 11122222 13367799999
Q ss_pred cchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhH
Q psy3997 97 EIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDL 176 (256)
Q Consensus 97 Eid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rR 176 (256)
|++.+..+.. ....|...++....... .+.+ +.+. .......+++.+.+|
T Consensus 214 Diq~l~~k~~-------------~~e~lf~l~N~~~~~~k--------~iIl-------tsd~--~P~~l~~l~~rL~SR 263 (450)
T PRK14087 214 DVQFLSYKEK-------------TNEIFFTIFNNFIENDK--------QLFF-------SSDK--SPELLNGFDNRLITR 263 (450)
T ss_pred ccccccCCHH-------------HHHHHHHHHHHHHHcCC--------cEEE-------ECCC--CHHHHhhccHHHHHH
Confidence 9998854321 23344444444432221 0111 1100 012224577888899
Q ss_pred hh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcc--cccchhHHHHHHhCCCCcccccC
Q psy3997 177 LV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYP--LQHSKHFTELVQSHPGRCKVTSD 237 (256)
Q Consensus 177 f~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~--~~~~~~~~~l~~~t~g~~~~~~~ 237 (256)
|. ....+..|+ .+.|..+++..+..... .-.++.++.|++..+|+++..-+
T Consensus 264 ~~~Gl~~~L~~pd----------~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~g 318 (450)
T PRK14087 264 FNMGLSIAIQKLD----------NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKG 318 (450)
T ss_pred HhCCceeccCCcC----------HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHH
Confidence 97 566677888 88999999888865432 22568999999999998865543
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=7.1e-12 Score=112.38 Aligned_cols=164 Identities=19% Similarity=0.241 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.|..+||+||||||||++|+++|+.+..+... ......++++++.+- .....++++.+.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~ 110 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASR------TKVEEMREILDN 110 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHH
Confidence 36678999999999999999999998632100 000123444443210 122335555544
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|++|||+|.+.. ...+.+++.++..... ..+..
T Consensus 111 ~~~~-p~~~~~kviIIDEa~~l~~---------------~a~naLLk~lEe~~~~-----------~~fIl--------- 154 (363)
T PRK14961 111 IYYS-PSKSRFKVYLIDEVHMLSR---------------HSFNALLKTLEEPPQH-----------IKFIL--------- 154 (363)
T ss_pred HhcC-cccCCceEEEEEChhhcCH---------------HHHHHHHHHHhcCCCC-----------eEEEE---------
Confidence 3321 1123456999999999843 2457788888764321 11111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
+++-++.+.+.+.+|+ ..+.+++++ .++....++..+......-.+..++.+++.+.|+.+
T Consensus 155 --~t~~~~~l~~tI~SRc-~~~~~~~l~----------~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 155 --ATTDVEKIPKTILSRC-LQFKLKIIS----------EEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred --EcCChHhhhHHHHhhc-eEEeCCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 1122355778888888 467888888 666666666555444332245788889999999775
No 89
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=7.9e-13 Score=115.30 Aligned_cols=152 Identities=17% Similarity=0.220 Sum_probs=89.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh--hccchhHHH----------HHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK--YFSESGKLV----------QKMFNKIK 81 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~--~~g~~~~~~----------~~~f~~a~ 81 (256)
...+.|||.||||||||++++.+|+.++. +++.++++..... ++|.....+ .-.+-.|.
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~---------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~ 132 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNW---------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL 132 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCC---------CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH
Confidence 34788999999999999999999999987 5577776554433 455422111 01222232
Q ss_pred HHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcc-cchhhHhhhhcCcc
Q psy3997 82 EAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKI-PFLTFVKYISNNSV 160 (256)
Q Consensus 82 ~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~-~~~~~~~~~~~~~i 160 (256)
. .+.++++||+|...+. +.+.|...||.-...+- ....+.+ +.....+.++.|.+
T Consensus 133 ~------~g~illlDEin~a~p~---------------~~~~L~~lLE~~~~l~i---~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 133 Q------HNVALCFDEYDAGRPD---------------VMFVIQRVLEAGGKLTL---LDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred h------CCeEEEechhhccCHH---------------HHHHHHHHhccCCeEEE---CCCceEecCCCCeEEEEeeCCC
Confidence 2 6788999999987443 55666666663100000 0001222 11122233344544
Q ss_pred CH------HHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHh
Q psy3997 161 SM------ENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMF 208 (256)
Q Consensus 161 ~~------t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~ 208 (256)
.. -.-...++.|.+.||...+.++.|+ ++.-.+|+...
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~----------~e~E~~Il~~~ 232 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLE----------HDNEAAIVLAK 232 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCC----------HHHHHHHHHhh
Confidence 21 0112456889999999998999998 55555665543
No 90
>KOG1969|consensus
Probab=99.35 E-value=3.3e-12 Score=119.14 Aligned_cols=166 Identities=22% Similarity=0.323 Sum_probs=108.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHh---cCCe
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEY---EESL 90 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~---~~~p 90 (256)
|+.+-+||+||||-||||||+.+|+..|. .++++|+++-.+ ...+++....|..+-.- -.+|
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGY---------sVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP 388 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGY---------SVVEINASDERT------APMVKEKIENAVQNHSVLDADSRP 388 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCc---------eEEEeccccccc------HHHHHHHHHHHHhhccccccCCCc
Confidence 44667899999999999999999999875 889999998543 34455544444433222 2589
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCC------------chhhhcccchhhHhhhhcC
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLS------------GRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~------------g~~~~~~~~~~~~~~~~~~ 158 (256)
..+++||||.-. ...+..++..+..-.....|-. +-..+.++.++
T Consensus 389 ~CLViDEIDGa~---------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICIC-------- 445 (877)
T KOG1969|consen 389 VCLVIDEIDGAP---------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICIC-------- 445 (877)
T ss_pred ceEEEecccCCc---------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEe--------
Confidence 999999999643 2245555555542111111111 11122333333
Q ss_pred ccCHHHHHHHHHHHHh--hHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 159 SVSMENFLIALEKTVL--DLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~--rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
|-. .-+|++ |-|.+.+.|++|. ..--.+-++..|....---....+..|+.+|.+|++.
T Consensus 446 -----NdL--YaPaLR~Lr~~A~ii~f~~p~----------~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRs 506 (877)
T KOG1969|consen 446 -----NDL--YAPALRPLRPFAEIIAFVPPS----------QSRLVERLNEICHRENMRADSKALNALCELTQNDIRS 506 (877)
T ss_pred -----cCc--cchhhhhcccceEEEEecCCC----------hhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHH
Confidence 222 234544 5788999999999 6655666677886666555669999999999998853
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=99.34 E-value=7.9e-12 Score=105.46 Aligned_cols=160 Identities=9% Similarity=0.126 Sum_probs=98.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
.+.++||||+|||||+|++++|+++.. ....+++++..++... ...+.+... ...+|+|
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~------~~~~v~y~~~~~~~~~--------~~~~~~~~~-------~~d~Lii 103 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ------RGEPAVYLPLAELLDR--------GPELLDNLE-------QYELVCL 103 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEeeHHHHHhh--------hHHHHHhhh-------hCCEEEE
Confidence 367899999999999999999998743 2346788887765432 112222222 3458999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||++.+..+.. ....|...++...... ..+.+-+ ++. ........+.+.+
T Consensus 104 DDi~~~~~~~~-------------~~~~Lf~l~n~~~~~g--------~~ilits-----~~~----p~~l~~~~~~L~S 153 (234)
T PRK05642 104 DDLDVIAGKAD-------------WEEALFHLFNRLRDSG--------RRLLLAA-----SKS----PRELPIKLPDLKS 153 (234)
T ss_pred echhhhcCChH-------------HHHHHHHHHHHHHhcC--------CEEEEeC-----CCC----HHHcCccCccHHH
Confidence 99998754321 2234555555443221 0111111 110 0111223677899
Q ss_pred Hhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccccc
Q psy3997 176 LLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTS 236 (256)
Q Consensus 176 Rf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~ 236 (256)
||. ....++.|+ .+.|..+++..+......-.++.++.|++..+++++...
T Consensus 154 Rl~~gl~~~l~~~~----------~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 154 RLTLALVFQMRGLS----------DEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHhcCeeeecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 996 555668888 788888888555443332256999999999999875443
No 92
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.7e-12 Score=119.63 Aligned_cols=172 Identities=28% Similarity=0.376 Sum_probs=136.3
Q ss_pred cccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc
Q psy3997 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 8 ~~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~ 87 (256)
.+..++.++++++++||||||||++++++|.+ +. .++.++.....++++|.++...+.+|..+...
T Consensus 10 ~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 75 (494)
T COG0464 10 FKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GA---------EFLSINGPEILSKYVGESELRLRELFEEAEKL---- 75 (494)
T ss_pred HHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cC---------cccccCcchhhhhhhhHHHHHHHHHHHHHHHh----
Confidence 34456677999999999999999999999999 32 33788889999999999999999999999975
Q ss_pred CCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 88 ESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
.|+++++||+|.+.+.+.. .......+++++++..++++. .. . +.... .++.+.
T Consensus 76 -~~~ii~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~--------~-v~~~~-----------~~~~~~ 129 (494)
T COG0464 76 -APSIIFIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RG--------Q-VIVIG-----------ATNRPD 129 (494)
T ss_pred -CCCeEeechhhhcccCccc----cccchhhHHHHHHHHhccccc-CC--------c-eEEEe-----------ecCCcc
Confidence 7899999999999998876 223455789999999999887 21 1 12222 445557
Q ss_pred HHHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 168 ALEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 168 ~ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
.+|++.++ ||+..+.+..|+ ...|..+........... .+...++++..+.|
T Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~----------~~~~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~ 183 (494)
T COG0464 130 GLDPAKRRPGRFDREIEVNLPD----------EAGRLEILQIHTRLMFLG-PPGTGKTLAARTVG 183 (494)
T ss_pred ccChhHhCccccceeeecCCCC----------HHHHHHHHHHHHhcCCCc-ccccHHHHHHhcCC
Confidence 78888877 999999999999 888877777555444333 36788889998888
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=1.5e-11 Score=108.22 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=89.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
|..+|++||||+|||++++++|++++. .++++++++ .. ...++...............+.+|+|
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~---------~~~~i~~~~--~~-----~~~i~~~l~~~~~~~~~~~~~~vlii 106 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGA---------EVLFVNGSD--CR-----IDFVRNRLTRFASTVSLTGGGKVIII 106 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCc---------cceEeccCc--cc-----HHHHHHHHHHHHHhhcccCCCeEEEE
Confidence 566777999999999999999999854 668888875 11 11122211111111111235789999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.+... .....+.+.++...... .+ +.++|....+.+++++
T Consensus 107 De~d~l~~~--------------~~~~~L~~~le~~~~~~-----------~~-----------Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 107 DEFDRLGLA--------------DAQRHLRSFMEAYSKNC-----------SF-----------IITANNKNGIIEPLRS 150 (316)
T ss_pred ECcccccCH--------------HHHHHHHHHHHhcCCCc-----------eE-----------EEEcCChhhchHHHHh
Confidence 999987321 12233444455432111 11 1133444678899999
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHh-------cCCCcccccchhHHHHHHhCCCCccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMF-------CGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~-------~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
||. .+.++.|+ .+.+..++..+ +......-.+..+..+++...|+.+.
T Consensus 151 R~~-~i~~~~p~----------~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~ 205 (316)
T PHA02544 151 RCR-VIDFGVPT----------KEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRR 205 (316)
T ss_pred hce-EEEeCCCC----------HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHH
Confidence 996 67888888 55555443322 21111111335667777777776543
No 94
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.2e-11 Score=114.62 Aligned_cols=165 Identities=15% Similarity=0.202 Sum_probs=105.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-------------------ccccceEEEEeccccchhhccchhHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-------------------KYKITEFIEINSHSLFSKYFSESGKLVQKM 76 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~-------------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~ 76 (256)
+.++||+||||||||++|+.+|+.++..... ......++++++.+ ..+...++++
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~i 116 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRI 116 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHH
Confidence 5789999999999999999999999652100 00112345555432 1133456777
Q ss_pred HHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhh
Q psy3997 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYIS 156 (256)
Q Consensus 77 f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~ 156 (256)
.+.+... .......|++|||+|.+.. .-.+.|++.|+.... ...++.
T Consensus 117 ie~a~~~-P~~~~~KVvIIDEa~~Ls~---------------~a~naLLk~LEepp~-----------~~vfI~------ 163 (507)
T PRK06645 117 IESAEYK-PLQGKHKIFIIDEVHMLSK---------------GAFNALLKTLEEPPP-----------HIIFIF------ 163 (507)
T ss_pred HHHHHhc-cccCCcEEEEEEChhhcCH---------------HHHHHHHHHHhhcCC-----------CEEEEE------
Confidence 7666532 1123557999999998843 246788888875321 111111
Q ss_pred cCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 157 NNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 157 ~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
.++....+.+++.+|+ ..+.+..++ .++....++..+......-.+..++.|++.+.|+.+..
T Consensus 164 -----aTte~~kI~~tI~SRc-~~~ef~~ls----------~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 164 -----ATTEVQKIPATIISRC-QRYDLRRLS----------FEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred -----EeCChHHhhHHHHhcc-eEEEccCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 2233456888889888 467788888 66666677767655443324577889999999976433
No 95
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.32 E-value=7.4e-12 Score=107.41 Aligned_cols=157 Identities=23% Similarity=0.228 Sum_probs=82.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc------cchhhccchhHHHHHHHHH-HH-------
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS------LFSKYFSESGKLVQKMFNK-IK------- 81 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~------l~~~~~g~~~~~~~~~f~~-a~------- 81 (256)
.+.+||+||||||||++|+++|+.+|. +++.++|.. ++..+.+.....+..-|.. ..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~---------~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDR---------PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVR 91 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC---------CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccc
Confidence 578999999999999999999998865 567776643 3332222221111111100 00
Q ss_pred ------HHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccc-hhhHhh
Q psy3997 82 ------EAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPF-LTFVKY 154 (256)
Q Consensus 82 ------~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~-~~~~~~ 154 (256)
........+.+++|||++.+.+. +.+.|+..|++-.-.-++..+ ..+.+.. ....+.
T Consensus 92 ~~~~~g~l~~A~~~g~~lllDEi~r~~~~---------------~q~~Ll~~Le~~~~~i~~~~~-~~~~i~~~~~frvI 155 (262)
T TIGR02640 92 QNWVDNRLTLAVREGFTLVYDEFTRSKPE---------------TNNVLLSVFEEGVLELPGKRG-TSRYVDVHPEFRVI 155 (262)
T ss_pred eeecCchHHHHHHcCCEEEEcchhhCCHH---------------HHHHHHHHhcCCeEEccCCCC-CCceEecCCCCEEE
Confidence 00000114569999999997543 667777777642211111000 0000000 011112
Q ss_pred hhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 155 ISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 155 ~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
++.|.... .....+++++.+|| ..+.++.|+ .+.-.+|+...+
T Consensus 156 aTsN~~~~-~g~~~l~~aL~~R~-~~i~i~~P~----------~~~e~~Il~~~~ 198 (262)
T TIGR02640 156 FTSNPVEY-AGVHETQDALLDRL-ITIFMDYPD----------IDTETAILRAKT 198 (262)
T ss_pred EeeCCccc-cceecccHHHHhhc-EEEECCCCC----------HHHHHHHHHHhh
Confidence 23332211 11124578899998 468899999 555556666544
No 96
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.9e-11 Score=114.83 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=102.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhh---------------cccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ---------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~---------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..+||+||||||||++|+++|+.++.... .......++++++++- .+...++++...+
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~ 110 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNV 110 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHH
Confidence 578899999999999999999999874210 0011225666665431 1233466666554
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
...- ..++..|++|||+|.|... ..+.|++.|+...... .++.
T Consensus 111 ~y~P-~~gk~KV~IIDEVh~LS~~---------------A~NALLKtLEEPP~~v-----------~FIL---------- 153 (702)
T PRK14960 111 PYAP-TQGRFKVYLIDEVHMLSTH---------------SFNALLKTLEEPPEHV-----------KFLF---------- 153 (702)
T ss_pred hhhh-hcCCcEEEEEechHhcCHH---------------HHHHHHHHHhcCCCCc-----------EEEE----------
Confidence 3221 1235679999999998542 5678888888643211 1111
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccC
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSD 237 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~ 237 (256)
+++-+..+...+++|+. ++.+..++ .+.-...++..+......-.+..+..|++.+.|+.+.+-+
T Consensus 154 -aTtd~~kIp~TIlSRCq-~feFkpLs----------~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 154 -ATTDPQKLPITVISRCL-QFTLRPLA----------VDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred -EECChHhhhHHHHHhhh-eeeccCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 12223455667778884 55566666 4444445555554443333558899999999998765544
No 97
>KOG0991|consensus
Probab=99.31 E-value=1.1e-11 Score=101.93 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=108.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeC
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLID 96 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iD 96 (256)
+++++.|||||||||.+.++|+++-.+- -.--++++|+++-..=- ...+--+.|.+-+-.+. ..+..||++|
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~----~ke~vLELNASdeRGID---vVRn~IK~FAQ~kv~lp-~grhKIiILD 120 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDS----YKEAVLELNASDERGID---VVRNKIKMFAQKKVTLP-PGRHKIIILD 120 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChh----hhhHhhhccCccccccH---HHHHHHHHHHHhhccCC-CCceeEEEee
Confidence 4689999999999999999999874321 12346788887643210 11112223332221111 3456799999
Q ss_pred cchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhH
Q psy3997 97 EIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDL 176 (256)
Q Consensus 97 Eid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rR 176 (256)
|+|++...-+ .++-+.|+=+.+.+ ...-++|-.+.+-+.+.+|
T Consensus 121 EADSMT~gAQ---------------QAlRRtMEiyS~tt----------------------RFalaCN~s~KIiEPIQSR 163 (333)
T KOG0991|consen 121 EADSMTAGAQ---------------QALRRTMEIYSNTT----------------------RFALACNQSEKIIEPIQSR 163 (333)
T ss_pred ccchhhhHHH---------------HHHHHHHHHHcccc----------------------hhhhhhcchhhhhhhHHhh
Confidence 9999864322 33334444332211 1111334334455566777
Q ss_pred hhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccccccc
Q psy3997 177 LVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSLA 249 (256)
Q Consensus 177 f~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~~ 249 (256)
+.--.+-.+-+ ...-.++.+..-.+.... .++-++.++....||.+..-++.+.+|+|.++.
T Consensus 164 CAiLRysklsd----------~qiL~Rl~~v~k~Ekv~y-t~dgLeaiifta~GDMRQalNnLQst~~g~g~V 225 (333)
T KOG0991|consen 164 CAILRYSKLSD----------QQILKRLLEVAKAEKVNY-TDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLV 225 (333)
T ss_pred hHhhhhcccCH----------HHHHHHHHHHHHHhCCCC-CcchHHHhhhhccchHHHHHHHHHHHhcccccc
Confidence 66554555544 444444444333444444 678999999999999999999999999999883
No 98
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=2.5e-11 Score=111.76 Aligned_cols=165 Identities=15% Similarity=0.199 Sum_probs=105.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.|..+||+||||||||++|+.+|+.++..... ......++++++++- .+...++++.+.
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~ 107 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILEN 107 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHH
Confidence 36789999999999999999999987532110 112345677777532 123456777666
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|++|||+|.|.. .-.|.|++.|++..... .++-
T Consensus 108 ~~~~-P~~~~~KVvIIDEah~Ls~---------------~A~NaLLK~LEePp~~v-----------~fIl--------- 151 (491)
T PRK14964 108 SCYL-PISSKFKVYIIDEVHMLSN---------------SAFNALLKTLEEPAPHV-----------KFIL--------- 151 (491)
T ss_pred HHhc-cccCCceEEEEeChHhCCH---------------HHHHHHHHHHhCCCCCe-----------EEEE---------
Confidence 5432 1233567999999998843 25688899988753211 1111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+++-...+.+.+++|+.. +.+..++ +++....+...+......-.+..++.|++.+.|+.+.
T Consensus 152 --atte~~Kl~~tI~SRc~~-~~f~~l~----------~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 152 --ATTEVKKIPVTIISRCQR-FDLQKIP----------TDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred --EeCChHHHHHHHHHhhee-eeccccc----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 122235577788888854 5666666 5555555555554443333558889999999997753
No 99
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=2e-11 Score=117.80 Aligned_cols=164 Identities=20% Similarity=0.228 Sum_probs=97.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc---------------cccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK---------------YKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~---------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+||+||||||||++|+.+|+.++...... .....+++++..+- .+...+|++.+.
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~------~kVDdIReLie~ 110 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASR------TKVDDTRELLDN 110 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccc------cCHHHHHHHHHH
Confidence 356689999999999999999999997531000 00112333433210 122345665555
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+...- ......|+||||+|.|.. ...+.||+.|++..... .++.
T Consensus 111 v~~~P-~~gk~KViIIDEAh~LT~---------------eAqNALLKtLEEPP~~v-----------rFIL--------- 154 (944)
T PRK14949 111 VQYRP-SRGRFKVYLIDEVHMLSR---------------SSFNALLKTLEEPPEHV-----------KFLL--------- 154 (944)
T ss_pred HHhhh-hcCCcEEEEEechHhcCH---------------HHHHHHHHHHhccCCCe-----------EEEE---------
Confidence 44221 134567999999999953 36799999998753211 1111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.|+.+..|-+.|++|+. ++.|...+ .+.-...++..+......-.+..++.|++.+.|+.+
T Consensus 155 --aTTe~~kLl~TIlSRCq-~f~fkpLs----------~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 155 --ATTDPQKLPVTVLSRCL-QFNLKSLT----------QDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR 215 (944)
T ss_pred --ECCCchhchHHHHHhhe-EEeCCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 12223446678888874 45555555 444344444444433333345789999999999876
No 100
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.8e-11 Score=108.09 Aligned_cols=150 Identities=22% Similarity=0.308 Sum_probs=102.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh------------ccchhHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------------FSESGKLVQKMFNKIKE 82 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------------~g~~~~~~~~~f~~a~~ 82 (256)
.|.++++|||||||||.+++.+++++..+. ....++++||....+.+ +..++....++++...+
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~----~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~ 116 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESS----ANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYD 116 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhh----ccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHH
Confidence 356799999999999999999999997653 22338999997665443 12233455677777777
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
.+.......||++||+|.|....+ .++-.|+...+... .++.+.+ ..| .
T Consensus 117 ~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~~-----------~~v~vi~-----i~n---~ 165 (366)
T COG1474 117 NLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGENK-----------VKVSIIA-----VSN---D 165 (366)
T ss_pred HHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhccccc-----------eeEEEEE-----Eec---c
Confidence 777777889999999999976532 36666665554431 1122222 122 2
Q ss_pred HHHHHHHHHHHhhHhh-hhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 163 ENFLIALEKTVLDLLV-EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 163 t~~~~~ld~ai~rRf~-~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
.++...+|+-+.+++. ..+.||+.+ .++-..|+.+-.
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~----------a~el~~Il~~R~ 203 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYT----------AEELYDILRERV 203 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCC----------HHHHHHHHHHHH
Confidence 2456789999999876 557888888 666666665443
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.29 E-value=1.6e-11 Score=103.07 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=94.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
.+..++|+||||||||++|+++++++.. ....++++++.++... +.. ...+.+|+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~------~~~~~~~i~~~~~~~~------------~~~-------~~~~~~li 95 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY------GGRNARYLDAASPLLA------------FDF-------DPEAELYA 95 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEEehHHhHHH------------Hhh-------cccCCEEE
Confidence 3678999999999999999999998733 2446788887654221 111 22457899
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||+|.+... ....++..++....... .+...+ .+.. .....+.+.+.
T Consensus 96 iDdi~~l~~~---------------~~~~L~~~~~~~~~~~~--------~~vl~~-----~~~~----~~~~~l~~~L~ 143 (227)
T PRK08903 96 VDDVERLDDA---------------QQIALFNLFNRVRAHGQ--------GALLVA-----GPAA----PLALPLREDLR 143 (227)
T ss_pred EeChhhcCch---------------HHHHHHHHHHHHHHcCC--------cEEEEe-----CCCC----HHhCCCCHHHH
Confidence 9999987432 12334444444332211 000111 0000 11122456677
Q ss_pred hHhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 175 DLLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 175 rRf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+||. ..+.+++|+ ++.+..++...+......-.++.++.|++..+|++..
T Consensus 144 sr~~~~~~i~l~pl~----------~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 144 TRLGWGLVYELKPLS----------DADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred HHHhcCeEEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 7885 578888888 6667777776664443333558999999999997754
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=2.4e-11 Score=109.61 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=95.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc--------------ccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS--------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~--------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
.+.++||+||||+|||++|+++|+.+..+... ......+..+.+.. . .-+...++++++.+
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~ 109 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG---L--SIGVDEVRELVTIA 109 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc---c--cCCHHHHHHHHHHH
Confidence 57889999999999999999999987542100 00011122333221 1 11223477777766
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... .......|++|||+|.+... -.|.||+.|++....+ +.+.
T Consensus 110 ~~~-p~~~~~kViiIDead~m~~~---------------aanaLLk~LEep~~~~----------~fIL----------- 152 (394)
T PRK07940 110 ARR-PSTGRWRIVVIEDADRLTER---------------AANALLKAVEEPPPRT----------VWLL----------- 152 (394)
T ss_pred HhC-cccCCcEEEEEechhhcCHH---------------HHHHHHHHhhcCCCCC----------eEEE-----------
Confidence 532 11235569999999999543 4488899888643221 1111
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~ 232 (256)
.++.++.+.+.|++|+. .+.|++|+ .++..+.+..-.+ . .....+.+++.+.|+.
T Consensus 153 -~a~~~~~llpTIrSRc~-~i~f~~~~----------~~~i~~~L~~~~~----~-~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 153 -CAPSPEDVLPTIRSRCR-HVALRTPS----------VEAVAEVLVRRDG----V-DPETARRAARASQGHI 207 (394)
T ss_pred -EECChHHChHHHHhhCe-EEECCCCC----------HHHHHHHHHHhcC----C-CHHHHHHHHHHcCCCH
Confidence 22335888999999984 77888888 5444433331111 1 2345667777887754
No 103
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=9.5e-12 Score=106.41 Aligned_cols=108 Identities=25% Similarity=0.345 Sum_probs=77.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-hhhccchhHH-HHHHHHHHHHHHHhcCCeEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-SKYFSESGKL-VQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-~~~~g~~~~~-~~~~f~~a~~~~~~~~~p~Ii 93 (256)
..+|||.||+|+|||.||+.+|+.++. +|-.-++..+. ..|+|+...+ +.++.+.|. +..++.+..||
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnV---------PFaiADATtLTEAGYVGEDVENillkLlqaad-ydV~rAerGII 166 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNV---------PFAIADATTLTEAGYVGEDVENILLKLLQAAD-YDVERAERGII 166 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCC---------CeeeccccchhhccccchhHHHHHHHHHHHcc-cCHHHHhCCeE
Confidence 567999999999999999999999965 66777777664 5578876544 455555443 22224467899
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhc
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK 134 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~ 134 (256)
+|||||.+.++....+...+ -.+..+..+||+.+++-...
T Consensus 167 yIDEIDKIarkSeN~SITRD-VSGEGVQQALLKiiEGTvas 206 (408)
T COG1219 167 YIDEIDKIARKSENPSITRD-VSGEGVQQALLKIIEGTVAS 206 (408)
T ss_pred EEechhhhhccCCCCCcccc-cCchHHHHHHHHHHcCceec
Confidence 99999999987654332221 12245889999999986653
No 104
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=2.7e-11 Score=114.73 Aligned_cols=163 Identities=19% Similarity=0.235 Sum_probs=100.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhh---------------cccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ---------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~---------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..+||+||+|||||++|+.+|+.++.... ..+....++++++.+- .+...++++.+.+
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~ 111 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNV 111 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHH
Confidence 566899999999999999999999976310 0001124555655321 1223456665554
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
...- ..+...|+||||+|.|... -.|.||+.|++-.... .++.
T Consensus 112 ~~~p-~~g~~KV~IIDEah~Ls~~---------------a~NALLKtLEEPp~~v-----------~FIL---------- 154 (647)
T PRK07994 112 QYAP-ARGRFKVYLIDEVHMLSRH---------------SFNALLKTLEEPPEHV-----------KFLL---------- 154 (647)
T ss_pred Hhhh-hcCCCEEEEEechHhCCHH---------------HHHHHHHHHHcCCCCe-----------EEEE----------
Confidence 3221 1345679999999998542 6799999998753211 1111
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.|+-+..|-+.|++|+ ..+.|..++ .++-...++..+......-.+..+..|++.+.|+.+
T Consensus 155 -~Tt~~~kLl~TI~SRC-~~~~f~~Ls----------~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 155 -ATTDPQKLPVTILSRC-LQFHLKALD----------VEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred -ecCCccccchHHHhhh-eEeeCCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 2222355667888897 556677776 444444555455333322245788899999999775
No 105
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=3.3e-11 Score=112.11 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=98.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh---------------cccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ---------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~---------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+||+||||||||++|+.+|+.++.+.. .......++++++++- .+...++++.+.
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~ 110 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDN 110 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHH
Confidence 3667899999999999999999999975310 0011224677765421 123345666554
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|++|||+|.|... -.|.|++.|++..... .++-
T Consensus 111 ~~~~-p~~~~~kV~iIDE~~~ls~~---------------a~naLLk~LEepp~~~-----------~fIl--------- 154 (509)
T PRK14958 111 IPYA-PTKGRFKVYLIDEVHMLSGH---------------SFNALLKTLEEPPSHV-----------KFIL--------- 154 (509)
T ss_pred Hhhc-cccCCcEEEEEEChHhcCHH---------------HHHHHHHHHhccCCCe-----------EEEE---------
Confidence 4321 11235579999999998543 5688999888753211 1111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+|+-+..+-..+.+|+. .+.+..++ .++-...++.++......-.+..++.+++.+.|+.+.+
T Consensus 155 --attd~~kl~~tI~SRc~-~~~f~~l~----------~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 155 --ATTDHHKLPVTVLSRCL-QFHLAQLP----------PLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred --EECChHhchHHHHHHhh-hhhcCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Confidence 11222445556888874 34455554 33333333444443333224577888999999876543
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.26 E-value=5.2e-11 Score=106.27 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=102.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+|||||||+|||++|+++|+.+..+... ......++++++.. ..+...++++++.
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~ 108 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDN 108 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHH
Confidence 35679999999999999999999998532100 00112345554431 1123346677776
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......||+|||+|.+.. ...+.+++.+++.... ..++.
T Consensus 109 ~~~~-p~~~~~~vviidea~~l~~---------------~~~~~Ll~~le~~~~~-----------~~lIl--------- 152 (355)
T TIGR02397 109 VKYA-PSSGKYKVYIIDEVHMLSK---------------SAFNALLKTLEEPPEH-----------VVFIL--------- 152 (355)
T ss_pred HhcC-cccCCceEEEEeChhhcCH---------------HHHHHHHHHHhCCccc-----------eeEEE---------
Confidence 5532 1123456999999998843 2457788877653211 11111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
.++.+..+.+++++|+. .+.+++|+ +++...++...+......-.+..++.|++.+.|+...+
T Consensus 153 --~~~~~~~l~~~l~sr~~-~~~~~~~~----------~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a 215 (355)
T TIGR02397 153 --ATTEPHKIPATILSRCQ-RFDFKRIP----------LEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDA 215 (355)
T ss_pred --EeCCHHHHHHHHHhhee-EEEcCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHH
Confidence 12233567788888884 67888888 67767777666654433224578888899988876543
No 107
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.26 E-value=8.2e-12 Score=100.27 Aligned_cols=105 Identities=28% Similarity=0.338 Sum_probs=68.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
-.++||.||+|||||.+|+++|+.+.. ....+++.++++.+... ...+..+.++...+..... .....||+|
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-----~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~-~~~~gVVll 74 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-----GSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVG-AEEGGVVLL 74 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT------SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHH-HHHHTEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-----CCccchHHHhhhccccc--chHHhhhhhhhhcccceee-ccchhhhhh
Confidence 467899999999999999999999962 13458899999887651 1122233343333221111 112349999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~ 132 (256)
||||++.+.. ....+-....+.+.||+.||+-.
T Consensus 75 DEidKa~~~~----~~~~~v~~~~V~~~LL~~le~g~ 107 (171)
T PF07724_consen 75 DEIDKAHPSN----SGGADVSGEGVQNSLLQLLEGGT 107 (171)
T ss_dssp ETGGGCSHTT----TTCSHHHHHHHHHHHHHHHHHSE
T ss_pred HHHhhccccc----cccchhhHHHHHHHHHHHhcccc
Confidence 9999998751 12222333478899999998643
No 108
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=6.1e-11 Score=112.23 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+.++||+||+|||||++|+.+|+.++.+... ......+++++..+ ..+...++++++.
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~ 110 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLEN 110 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHH
Confidence 36789999999999999999999998653100 00112345555432 1223456777765
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|+||||+|.|.. ...+.||+.|+...... .++.
T Consensus 111 a~~~-P~~gk~KVIIIDEad~Ls~---------------~A~NALLKtLEEPp~~v-----------~fIL--------- 154 (709)
T PRK08691 111 AQYA-PTAGKYKVYIIDEVHMLSK---------------SAFNAMLKTLEEPPEHV-----------KFIL--------- 154 (709)
T ss_pred HHhh-hhhCCcEEEEEECccccCH---------------HHHHHHHHHHHhCCCCc-----------EEEE---------
Confidence 5432 1123557999999998743 25688999988643211 1111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+++.+..+...+++|+ ..+.|..++ .++-...+...+......-.+..++.|++.+.|+.+..
T Consensus 155 --aTtd~~kL~~TIrSRC-~~f~f~~Ls----------~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 155 --ATTDPHKVPVTVLSRC-LQFVLRNMT----------AQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred --EeCCccccchHHHHHH-hhhhcCCCC----------HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHH
Confidence 1122344556677887 344555565 44444455555554433325578899999999977443
No 109
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.6e-11 Score=110.97 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=102.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh----c----------ccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ----S----------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~----~----------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
.+..+|||||||||||++|+++|+.+...-. + ......++++++++- .+...++++.+.+
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~ 108 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKV 108 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHH
Confidence 3556799999999999999999999863100 0 011123566665321 1223455554444
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... .....+.||+|||+|.+.. ...+.|++.|+..... ..++
T Consensus 109 ~~~-p~~~~~kVVIIDEad~ls~---------------~a~naLLk~LEep~~~-----------t~~I----------- 150 (504)
T PRK14963 109 LLA-PLRGGRKVYILDEAHMMSK---------------SAFNALLKTLEEPPEH-----------VIFI----------- 150 (504)
T ss_pred hhc-cccCCCeEEEEECccccCH---------------HHHHHHHHHHHhCCCC-----------EEEE-----------
Confidence 321 1123567999999997732 2567788887764211 0111
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
..++.+..+.+.+.+|+. .+.|+.++ ++.-...++..+......-.+..++.|++.+.|+.+.+
T Consensus 151 l~t~~~~kl~~~I~SRc~-~~~f~~ls----------~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 151 LATTEPEKMPPTILSRTQ-HFRFRRLT----------EEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEcCChhhCChHHhcceE-EEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 122334667788888876 57777777 66655666656644433325578999999999988655
No 110
>KOG0745|consensus
Probab=99.23 E-value=3.3e-11 Score=106.84 Aligned_cols=153 Identities=23% Similarity=0.340 Sum_probs=100.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-hhhccchh-HHHHHHHHHHHHHHHhcCCeE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-SKYFSESG-KLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-~~~~g~~~-~~~~~~f~~a~~~~~~~~~p~ 91 (256)
--..+|||.||+|+|||.||+.+|+.++. +|.-.+|..+. ..|+|+.. ..+++++..|.-.++ +.+..
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldV---------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVe-kAQqG 293 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDV---------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVE-KAQQG 293 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCC---------CeEEecccchhhcccccccHHHHHHHHHHHccCCHH-HHhcC
Confidence 34578999999999999999999999965 77889998875 55788754 456777776653333 33567
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCc----------hhhhcccchhhHhhhhcCccC
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSG----------RTLRKIPFLTFVKYISNNSVS 161 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g----------~~~~~~~~~~~~~~~~~~~i~ 161 (256)
||||||+|.+..+-....... +-.+..+...||+.+++-..+-+.... -+..++.|++ .
T Consensus 294 IVflDEvDKi~~~~~~i~~~R-DVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFia-----s----- 362 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSR-DVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIA-----S----- 362 (564)
T ss_pred eEEEehhhhhcccCccccccc-cccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEe-----c-----
Confidence 999999999985444322221 122346889999999976543211100 1111222222 1
Q ss_pred HHHHHHHHHHHHhhHhh-hhhccCCCCCC
Q psy3997 162 MENFLIALEKTVLDLLV-EEKSLPLKRNT 189 (256)
Q Consensus 162 ~t~~~~~ld~ai~rRf~-~~i~~~~p~~~ 189 (256)
.-...||+.+.||.+ ..+-|..|+.+
T Consensus 363 --GAF~~Ldk~I~rR~~d~slGFg~~s~~ 389 (564)
T KOG0745|consen 363 --GAFVGLDKIISRRLDDKSLGFGAPSSK 389 (564)
T ss_pred --ccccchHHHHHHhhcchhcccCCCCCc
Confidence 122458888888876 66778888653
No 111
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=9.1e-11 Score=109.89 Aligned_cols=164 Identities=14% Similarity=0.201 Sum_probs=100.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh-----c----------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ-----S----------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~-----~----------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+.++||+||||+|||++|+.+|+.+...-. | ......++++++... .+...++++.+.
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~ 110 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDN 110 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHH
Confidence 3678999999999999999999999853110 0 000123455554321 122346666655
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|++|||+|.|... -.+.|+..|+...... .+.
T Consensus 111 ~~~~-P~~~~~KVIIIDEad~Lt~~---------------A~NaLLKtLEEPp~~t-----------vfI---------- 153 (605)
T PRK05896 111 INYL-PTTFKYKVYIIDEAHMLSTS---------------AWNALLKTLEEPPKHV-----------VFI---------- 153 (605)
T ss_pred HHhc-hhhCCcEEEEEechHhCCHH---------------HHHHHHHHHHhCCCcE-----------EEE----------
Confidence 5432 11224468999999998432 4578888888643211 111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.+++.+..+.+.+++|+. .+.++.++ +++....+...+......-.+..++.+++++.|+.+
T Consensus 154 -L~Tt~~~KLl~TI~SRcq-~ieF~~Ls----------~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 154 -FATTEFQKIPLTIISRCQ-RYNFKKLN----------NSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLR 215 (605)
T ss_pred -EECCChHhhhHHHHhhhh-hcccCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH
Confidence 122334678888999986 57777777 555555555555433322245778888999988765
No 112
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.23 E-value=4.9e-12 Score=112.01 Aligned_cols=141 Identities=25% Similarity=0.327 Sum_probs=86.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc--hhhccchhHHHH----HHHHHHHHHHHhcCC
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF--SKYFSESGKLVQ----KMFNKIKEAVEYEES 89 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~----~~f~~a~~~~~~~~~ 89 (256)
.+.+||.||||||||++|+++|+.++. +|+.++|.... +..+|...-..+ ..|.....-+-...+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~---------~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~ 113 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGL---------PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR 113 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCC---------CeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc
Confidence 577999999999999999999999975 66777776433 333343322211 001111000000001
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCC-chhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLS-GRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~-g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
+|+++|||++..+ .+.+.|+..|++....-.+.. -.....+.+.+ +.|.+.. +-...
T Consensus 114 -~ill~DEInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via-----T~Np~e~-~g~~~ 171 (329)
T COG0714 114 -VILLLDEINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIA-----TQNPGEY-EGTYP 171 (329)
T ss_pred -eEEEEeccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE-----ccCcccc-CCCcC
Confidence 3999999998754 388999999987655444443 12222222222 3332211 12355
Q ss_pred HHHHHhhHhhhhhccCCCC
Q psy3997 169 LEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 169 ld~ai~rRf~~~i~~~~p~ 187 (256)
+.+|+++||...++++.|+
T Consensus 172 l~eA~ldRf~~~~~v~yp~ 190 (329)
T COG0714 172 LPEALLDRFLLRIYVDYPD 190 (329)
T ss_pred CCHHHHhhEEEEEecCCCC
Confidence 7889999999999999995
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.2e-10 Score=109.46 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=98.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhh---------------cccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ---------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~---------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..+||+||||||||++|+.+|+.+..+.. .......++++++..- .+-..++++.+.+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~ 111 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAI 111 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHH
Confidence 568999999999999999999999964210 0011123555554221 1122344433333
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... .......||||||+|.|... ..+.|++.|++.... +.+ |
T Consensus 112 ~~~-p~~g~~kVIIIDEad~Lt~~---------------a~naLLk~LEEP~~~-----------~if-----------I 153 (624)
T PRK14959 112 GYA-PMEGRYKVFIIDEAHMLTRE---------------AFNALLKTLEEPPAR-----------VTF-----------V 153 (624)
T ss_pred Hhh-hhcCCceEEEEEChHhCCHH---------------HHHHHHHHhhccCCC-----------EEE-----------E
Confidence 221 12345679999999998532 468888888764321 111 1
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.+++.+..+...+++|+. .+.|+.++ +++-...++..+......-.+..++.|++.+.|+.+
T Consensus 154 LaTt~~~kll~TI~SRcq-~i~F~pLs----------~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 154 LATTEPHKFPVTIVSRCQ-HFTFTRLS----------EAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred EecCChhhhhHHHHhhhh-ccccCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 133444566677888885 56677777 555555555555443332255788899999999775
No 114
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.23 E-value=1.7e-11 Score=110.91 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=79.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccch----------hHHHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSES----------GKLVQKMFNKIKEAV 84 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~----------~~~~~~~f~~a~~~~ 84 (256)
..++++|+||||||||++|+.+|+.+.... ......++.+..+.....+++.. ...+.++...|...
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~--~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~- 269 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEK--APQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ- 269 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCc--ccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc-
Confidence 368899999999999999999999985321 00122344444433333332110 11233444444432
Q ss_pred HhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhc-----------CCCCCchhhhcccchhhHh
Q psy3997 85 EYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK-----------STGLSGRTLRKIPFLTFVK 153 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~-----------~~g~~g~~~~~~~~~~~~~ 153 (256)
...|.+++||||++... .+++.++++.|+.-... ..+..-..+.++.++++|.
T Consensus 270 --p~~~~vliIDEINRani--------------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMN 333 (459)
T PRK11331 270 --PEKKYVFIIDEINRANL--------------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMN 333 (459)
T ss_pred --ccCCcEEEEehhhccCH--------------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecC
Confidence 34689999999998643 24677777777632110 0000011223333333222
Q ss_pred hhhcCccCHHHHHHHHHHHHhhHhhhhhccC
Q psy3997 154 YISNNSVSMENFLIALEKTVLDLLVEEKSLP 184 (256)
Q Consensus 154 ~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~ 184 (256)
...+ -...+|.|++|||...-..|
T Consensus 334 t~Dr-------s~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 334 TADR-------SLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred cccc-------chhhccHHHHhhhheEEecC
Confidence 2211 11369999999998744443
No 115
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.23 E-value=2.3e-11 Score=117.55 Aligned_cols=137 Identities=21% Similarity=0.285 Sum_probs=81.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch-----hhccchhH----HH-HHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS-----KYFSESGK----LV-QKMFNKIKEAVEY 86 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~-----~~~g~~~~----~~-~~~f~~a~~~~~~ 86 (256)
..+||+||||||||++|+++|+.++. +++.++++++.. .++|.... .. ..+.+.++
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~---------~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~----- 554 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGI---------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI----- 554 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC---------CcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH-----
Confidence 46999999999999999999999864 678888876532 22332100 00 11222222
Q ss_pred cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch-hhcCCCCCchhhhcccchhhHhhhhcC-------
Q psy3997 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL-KKKSTGLSGRTLRKIPFLTFVKYISNN------- 158 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~-~~~~~g~~g~~~~~~~~~~~~~~~~~~------- 158 (256)
.+..+||||||+|.+.+ .+.+.|++.||.- -....|. .+.+..+++.+++|
T Consensus 555 ~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~------~vd~rn~iiI~TsN~g~~~~~ 613 (758)
T PRK11034 555 KHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGR------KADFRNVVLVMTTNAGVRETE 613 (758)
T ss_pred hCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCc------eecCCCcEEEEeCCcCHHHHh
Confidence 23568999999999964 3889999999742 1122222 11111111222221
Q ss_pred --ccC----------HHHHHHHHHHHHhhHhhhhhccCCCCC
Q psy3997 159 --SVS----------MENFLIALEKTVLDLLVEEKSLPLKRN 188 (256)
Q Consensus 159 --~i~----------~t~~~~~ld~ai~rRf~~~i~~~~p~~ 188 (256)
.++ .......+.+.+..|++..+.|++.+.
T Consensus 614 ~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~ 655 (758)
T PRK11034 614 RKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLST 655 (758)
T ss_pred hcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCH
Confidence 000 122234456778889999999998883
No 116
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=7.1e-11 Score=111.20 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+||+||+|||||++|+.+|+.+..+... ......++++++.. +.+...++++.+.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~ 110 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDK 110 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHH
Confidence 36779999999999999999999998643200 01123455655532 1233456777666
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|++|||+|.|.. .-.+.|++.|++.... +.++.
T Consensus 111 v~~~-p~~~~~kViIIDE~~~Lt~---------------~a~naLLKtLEepp~~-----------~ifIl--------- 154 (559)
T PRK05563 111 VKYA-PSEAKYKVYIIDEVHMLST---------------GAFNALLKTLEEPPAH-----------VIFIL--------- 154 (559)
T ss_pred HhhC-cccCCeEEEEEECcccCCH---------------HHHHHHHHHhcCCCCC-----------eEEEE---------
Confidence 5532 1234567999999998843 2568888888764321 11111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+++.+..+.+.+++|+. .+.|..|+ .++-...++..+......-.+..++.+++...|+.+.
T Consensus 155 --att~~~ki~~tI~SRc~-~~~f~~~~----------~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 155 --ATTEPHKIPATILSRCQ-RFDFKRIS----------VEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred --EeCChhhCcHHHHhHhe-EEecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 22234667788899886 46677777 5555555555554433322457788899999887643
No 117
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.21 E-value=4.2e-13 Score=101.21 Aligned_cols=126 Identities=26% Similarity=0.275 Sum_probs=64.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec--cccchhhccchhHHHH-HHHHHHHHHHHhcCCeEEEEe
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS--HSLFSKYFSESGKLVQ-KMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~--~~l~~~~~g~~~~~~~-~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+||.|+||+|||++|+++|+.++. .|..|.+ .-+.++..|..--.-+ ..|...+. .--..|+++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~---------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~G----Pif~~ill~ 68 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL---------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPG----PIFTNILLA 68 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-----------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-----TT-SSEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCC---------ceeEEEecCCCCcccceeeeeeccCCCeeEeecC----hhhhceeee
Confidence 799999999999999999999987 4444444 2333443333110000 00100000 001249999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
|||++..++ +.+.+|+.|.+-...-.|......+.+.+.+ +.|.+.... ...|.+|++.
T Consensus 69 DEiNrappk---------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViA-----TqNp~e~~G-ty~Lpea~~D 127 (131)
T PF07726_consen 69 DEINRAPPK---------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIA-----TQNPVEQEG-TYPLPEAQLD 127 (131)
T ss_dssp ETGGGS-HH---------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEE-----EE-TT--S-------HHHHT
T ss_pred cccccCCHH---------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEE-----ecCccccCc-eecCCHHHhc
Confidence 999998764 7789999998766554454444445555555 555554433 3578888888
Q ss_pred Hhh
Q psy3997 176 LLV 178 (256)
Q Consensus 176 Rf~ 178 (256)
||.
T Consensus 128 RF~ 130 (131)
T PF07726_consen 128 RFM 130 (131)
T ss_dssp TSS
T ss_pred ccc
Confidence 874
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=1.3e-10 Score=110.92 Aligned_cols=164 Identities=17% Similarity=0.264 Sum_probs=100.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc------------ccccceEEEEeccccchhhccchhHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE 82 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~ 82 (256)
.+..+|||||||||||++|+.+|+.+..+-.. ......++++++.. ..+...++++.+.+..
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas------n~~vd~IReLie~~~~ 112 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS------NNGVDEIRELIENVKN 112 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc------cCCHHHHHHHHHHHHh
Confidence 36778999999999999999999998642100 00011223332210 0123346777665553
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
. .......|++|||+|.|... ..+.||..|++..... .++. +
T Consensus 113 ~-P~~g~~KV~IIDEa~~LT~~---------------A~NALLKtLEEPP~~t-----------ifIL-----------a 154 (725)
T PRK07133 113 L-PTQSKYKIYIIDEVHMLSKS---------------AFNALLKTLEEPPKHV-----------IFIL-----------A 154 (725)
T ss_pred c-hhcCCCEEEEEEChhhCCHH---------------HHHHHHHHhhcCCCce-----------EEEE-----------E
Confidence 2 12345679999999998532 5688899888753211 1111 2
Q ss_pred HHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 163 ENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 163 t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
++-+..|.+.+++|+. ++.+..++ .++....+...+......-.+..++.+++++.|+.+
T Consensus 155 Tte~~KLl~TI~SRcq-~ieF~~L~----------~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 155 TTEVHKIPLTILSRVQ-RFNFRRIS----------EDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred cCChhhhhHHHHhhce-eEEccCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 2334677888999986 67777777 555454555444333322234668899999999775
No 119
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.21 E-value=1.6e-11 Score=119.29 Aligned_cols=145 Identities=19% Similarity=0.296 Sum_probs=86.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc---------hhhccchhHHHHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF---------SKYFSESGKLVQKMFNKIKEAVEY 86 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~---------~~~~g~~~~~~~~~f~~a~~~~~~ 86 (256)
...++|+||||||||++++.+|+.++. +|+.++..... ..|.|.....+.+.+..+..
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~---------~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~---- 415 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGR---------KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV---- 415 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC---------CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC----
Confidence 456999999999999999999999976 45666654332 12334433334333433321
Q ss_pred cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCC--C--CchhhhcccchhhHhhhhcCccCH
Q psy3997 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTG--L--SGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g--~--~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
...|++|||+|.+....+. ...+.|++.+|.-.+.+.. + ..-++.++.+++ +
T Consensus 416 --~~~villDEidk~~~~~~g-----------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~-----------T 471 (784)
T PRK10787 416 --KNPLFLLDEIDKMSSDMRG-----------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA-----------T 471 (784)
T ss_pred --CCCEEEEEChhhcccccCC-----------CHHHHHHHHhccccEEEEecccccccccCCceEEEE-----------c
Confidence 2348999999999754221 1457888888742211100 0 011122333333 3
Q ss_pred HHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 163 ENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 163 t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
+|.. .|++++++||. .+.+..++ ++...+|.+.++
T Consensus 472 aN~~-~i~~aLl~R~~-ii~~~~~t----------~eek~~Ia~~~L 506 (784)
T PRK10787 472 SNSM-NIPAPLLDRME-VIRLSGYT----------EDEKLNIAKRHL 506 (784)
T ss_pred CCCC-CCCHHHhccee-eeecCCCC----------HHHHHHHHHHhh
Confidence 3433 38999999995 56677777 566666666555
No 120
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.5e-10 Score=108.08 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=97.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..+||+||||||||++|+.+|+.+...... ......+++++...- . +...++++.+.+
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~ 111 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNI 111 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHH
Confidence 5668999999999999999999998642100 001124455543211 1 122455666555
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... .......|++|||+|.+... -.+.||+.|++..... .++. .
T Consensus 112 ~~~-p~~g~~kViIIDEa~~ls~~---------------a~naLLK~LEepp~~v-----------~fIL-----~---- 155 (546)
T PRK14957 112 QYM-PSQGRYKVYLIDEVHMLSKQ---------------SFNALLKTLEEPPEYV-----------KFIL-----A---- 155 (546)
T ss_pred Hhh-hhcCCcEEEEEechhhccHH---------------HHHHHHHHHhcCCCCc-----------eEEE-----E----
Confidence 432 12345679999999998532 5688898888643211 1111 0
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
+++ ...+-..+++|+ ..+.+..++ .+.-...+...+......-.+..++.|++.+.|+.+
T Consensus 156 -Ttd-~~kil~tI~SRc-~~~~f~~Ls----------~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 156 -TTD-YHKIPVTILSRC-IQLHLKHIS----------QADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred -ECC-hhhhhhhHHHhe-eeEEeCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 123 344555688888 556666666 444344444444333322245788899999999775
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.8e-10 Score=108.42 Aligned_cols=163 Identities=16% Similarity=0.186 Sum_probs=100.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-----------------ccccceEEEEeccccchhhccchhHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-----------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~-----------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~ 78 (256)
+..+||+||+|||||++|+.+|+.+...-.. ......++++++.... +...++++.+
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~ 108 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRD 108 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEecccccc------CHHHHHHHHH
Confidence 5568999999999999999999998742100 0112345566553211 2233555544
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcC
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 158 (256)
.+... .......|++|||+|.|... -.|.||+.|+..... +.++.
T Consensus 109 ~~~~~-P~~~~~KVvIIDEah~Lt~~---------------A~NALLK~LEEpp~~-----------~~fIL-------- 153 (584)
T PRK14952 109 RAFYA-PAQSRYRIFIVDEAHMVTTA---------------GFNALLKIVEEPPEH-----------LIFIF-------- 153 (584)
T ss_pred HHHhh-hhcCCceEEEEECCCcCCHH---------------HHHHHHHHHhcCCCC-----------eEEEE--------
Confidence 44322 11235569999999998532 568899999875421 11111
Q ss_pred ccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 159 SVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
+++-++.+-+.|++|. ..+.|..++ .+.-...+..++......-.+..+..+++...|+.+
T Consensus 154 ---~tte~~kll~TI~SRc-~~~~F~~l~----------~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 154 ---ATTEPEKVLPTIRSRT-HHYPFRLLP----------PRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred ---EeCChHhhHHHHHHhc-eEEEeeCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 2233367778888885 456676676 454455555566544433345778888898888764
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.4e-10 Score=108.61 Aligned_cols=163 Identities=17% Similarity=0.238 Sum_probs=96.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..+||+||||+|||++|+.+|+.++.+... ......+++++++. ..+...++++...+
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~ 111 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNA 111 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHH
Confidence 5678999999999999999999999653100 00112345555431 11233466666655
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... .......|++|||+|.|... -.|.||+.|++..... .++-
T Consensus 112 ~~~-p~~~~~kVvIIDEad~ls~~---------------a~naLLK~LEepp~~~-----------~fIL---------- 154 (527)
T PRK14969 112 QYA-PTRGRFKVYIIDEVHMLSKS---------------AFNAMLKTLEEPPEHV-----------KFIL---------- 154 (527)
T ss_pred hhC-cccCCceEEEEcCcccCCHH---------------HHHHHHHHHhCCCCCE-----------EEEE----------
Confidence 421 11234579999999988532 5688999988743211 1111
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
+++-+..+-..+++|+ ..+.|..++ .++-...+...+......-.+..++.|++.+.|+.+
T Consensus 155 -~t~d~~kil~tI~SRc-~~~~f~~l~----------~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 155 -ATTDPQKIPVTVLSRC-LQFNLKQMP----------PPLIVSHLQHILEQENIPFDATALQLLARAAAGSMR 215 (527)
T ss_pred -EeCChhhCchhHHHHH-HHHhcCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 1122344555678887 556666666 444444444444333222244778888999988764
No 123
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.18 E-value=9.9e-11 Score=113.79 Aligned_cols=83 Identities=27% Similarity=0.433 Sum_probs=58.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh------------hccchhHHHHHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK------------YFSESGKLVQKMFNKIKEAVE 85 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~ 85 (256)
.+||+||||||||++|+++|+.++. +++.++++++... |+|..+ ...+.+.++
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~---------~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~---- 550 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGV---------HLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVR---- 550 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcC---------CeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHH----
Confidence 4899999999999999999999854 6788888765432 222211 112222222
Q ss_pred hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch
Q psy3997 86 YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~ 131 (256)
....+||+|||+|.+.+ .+.+.|++.||+-
T Consensus 551 -~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g 580 (731)
T TIGR02639 551 -KHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYA 580 (731)
T ss_pred -hCCCeEEEEechhhcCH---------------HHHHHHHHhhccC
Confidence 23678999999998854 3788999998753
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=1e-10 Score=113.96 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=96.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhh-----c------------ccccceEEEEeccccchhhccchhHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ-----S------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~-----~------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~ 78 (256)
+..+||+||+|||||++|+.+|+.+...-. | ......+++++..+.. +...++++-+
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~ 110 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHG------GVDDARELRE 110 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHH
Confidence 566899999999999999999999964210 0 0022345555543211 1223444433
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcC
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 158 (256)
.+... .......|+||||+|.|... -.|.||+.|++....+ .++.
T Consensus 111 ~~~~~-p~~~~~KV~IIDEad~lt~~---------------a~NaLLK~LEEpP~~~-----------~fIl-------- 155 (824)
T PRK07764 111 RAFFA-PAESRYKIFIIDEAHMVTPQ---------------GFNALLKIVEEPPEHL-----------KFIF-------- 155 (824)
T ss_pred HHHhc-hhcCCceEEEEechhhcCHH---------------HHHHHHHHHhCCCCCe-----------EEEE--------
Confidence 33211 11346679999999999542 5688999998754321 1111
Q ss_pred ccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCc
Q psy3997 159 SVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~ 232 (256)
.++..+.|-+.|++|+. .+.|..++ .+....++++.|........+..+..+++...|+.
T Consensus 156 ---~tt~~~kLl~TIrSRc~-~v~F~~l~----------~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdl 215 (824)
T PRK07764 156 ---ATTEPDKVIGTIRSRTH-HYPFRLVP----------PEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSV 215 (824)
T ss_pred ---EeCChhhhhHHHHhhee-EEEeeCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 12223446677888875 44555555 44444555556544433324466788888888876
No 125
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.18 E-value=2.6e-10 Score=92.94 Aligned_cols=159 Identities=15% Similarity=0.178 Sum_probs=95.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+|||||||+|||++|+.+++.+..+-.. ......+..+.... .. -+...++++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 36789999999999999999999998532000 00001122222211 00 112345555555
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+...- ......||+|||+|.+... ..+.|+..|+.....+ .+.+
T Consensus 88 ~~~~~-~~~~~kviiide~~~l~~~---------------~~~~Ll~~le~~~~~~---------~~il----------- 131 (188)
T TIGR00678 88 LSRTP-QESGRRVVIIEDAERMNEA---------------AANALLKTLEEPPPNT---------LFIL----------- 131 (188)
T ss_pred HccCc-ccCCeEEEEEechhhhCHH---------------HHHHHHHHhcCCCCCe---------EEEE-----------
Confidence 54321 1345679999999998542 4567888887643211 0111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.++.+..+.+++++|+. .+.+++|+ +++...++... + . .+..++.+++.+.|+.+
T Consensus 132 --~~~~~~~l~~~i~sr~~-~~~~~~~~----------~~~~~~~l~~~-g----i-~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 132 --ITPSPEKLLPTIRSRCQ-VLPFPPLS----------EEALLQWLIRQ-G----I-SEEAAELLLALAGGSPG 186 (188)
T ss_pred --EECChHhChHHHHhhcE-EeeCCCCC----------HHHHHHHHHHc-C----C-CHHHHHHHHHHcCCCcc
Confidence 11222567889999985 78888888 66655555544 1 2 34779999999998654
No 126
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.18 E-value=1.4e-10 Score=101.78 Aligned_cols=161 Identities=14% Similarity=0.180 Sum_probs=94.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc-CCeEEEEe
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE-ESLVCLLI 95 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~-~~p~Ii~i 95 (256)
+.++|+||||||||++++++++++..+. ....++++++++... ...+++.+.......... ..+.+|+|
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~----~~~~~i~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vvii 108 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGED----WRENFLELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFL 108 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCc----cccceEEeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEE
Confidence 3589999999999999999999974321 123456665543211 112222222222111111 24569999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.+... ..+.|+..++.....+ .+.+ .++....+.+.+.+
T Consensus 109 De~~~l~~~---------------~~~~L~~~le~~~~~~---------~lIl-------------~~~~~~~l~~~l~s 151 (319)
T PRK00440 109 DEADNLTSD---------------AQQALRRTMEMYSQNT---------RFIL-------------SCNYSSKIIDPIQS 151 (319)
T ss_pred eCcccCCHH---------------HHHHHHHHHhcCCCCC---------eEEE-------------EeCCccccchhHHH
Confidence 999988432 2345555555432211 1111 11222344556777
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
|+. .+.+++++ +++...++..++......-.+..++.|++.+.|+.+..
T Consensus 152 r~~-~~~~~~l~----------~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 152 RCA-VFRFSPLK----------KEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred Hhh-eeeeCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 876 47888887 66666667766654443335688999999999987653
No 127
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.6e-10 Score=109.27 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=97.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhh--------------------cccccceEEEEeccccchhhccchhHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ--------------------SKYKITEFIEINSHSLFSKYFSESGKLVQK 75 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~--------------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 75 (256)
+..+||+||+|||||++|+.+|+.++.... ..+....++++++.+- .+...+++
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iRe 111 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQ 111 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHH
Confidence 567899999999999999999999864210 0001124555554321 12234566
Q ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhh
Q psy3997 76 MFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYI 155 (256)
Q Consensus 76 ~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~ 155 (256)
+.+.+... .......|++|||+|.|... -.|.|++.|++..... .++-
T Consensus 112 li~~~~~~-p~~g~~KV~IIDEvh~Ls~~---------------a~NaLLKtLEEPP~~~-----------~fIL----- 159 (618)
T PRK14951 112 LLEQAVYK-PVQGRFKVFMIDEVHMLTNT---------------AFNAMLKTLEEPPEYL-----------KFVL----- 159 (618)
T ss_pred HHHHHHhC-cccCCceEEEEEChhhCCHH---------------HHHHHHHhcccCCCCe-----------EEEE-----
Confidence 55554321 11234569999999998543 4688888887643211 1111
Q ss_pred hcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 156 SNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 156 ~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+++.+..+-..+++|+ ..+.+..++ .+.....++..+......-.+..++.|++.+.|+.+..
T Consensus 160 ------~Ttd~~kil~TIlSRc-~~~~f~~Ls----------~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 160 ------ATTDPQKVPVTVLSRC-LQFNLRPMA----------PETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred ------EECCchhhhHHHHHhc-eeeecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 1122244555688887 455566565 44444455545543333324577899999999977544
Q ss_pred cC
Q psy3997 236 SD 237 (256)
Q Consensus 236 ~~ 237 (256)
-+
T Consensus 223 l~ 224 (618)
T PRK14951 223 LS 224 (618)
T ss_pred HH
Confidence 33
No 128
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.17 E-value=6.4e-11 Score=90.96 Aligned_cols=78 Identities=31% Similarity=0.389 Sum_probs=50.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
.+.++++||||||||++++.+++.+.. ...+++++++................ .............+.++++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lil 90 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFR------PGAPFLYLNASDLLEGLVVAELFGHF--LVRLLFELAEKAKPGVLFI 90 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc------CCCCeEEEehhhhhhhhHHHHHhhhh--hHhHHHHhhccCCCeEEEE
Confidence 678999999999999999999999842 23477888887655433211111000 0011111112447889999
Q ss_pred Ccchhh
Q psy3997 96 DEIESL 101 (256)
Q Consensus 96 DEid~l 101 (256)
||++.+
T Consensus 91 De~~~~ 96 (151)
T cd00009 91 DEIDSL 96 (151)
T ss_pred eChhhh
Confidence 999988
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=3.8e-10 Score=104.49 Aligned_cols=165 Identities=19% Similarity=0.234 Sum_probs=100.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+|||||||+|||++|+.+|+.++..... ......+++++++.- .+...++.+.+.
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~ 110 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASN------RGIDDIRALRDA 110 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHH
Confidence 35678999999999999999999998631000 001123444443211 122235555544
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .....+.|++|||+|.+... ..+.|+..|+...... +.+.
T Consensus 111 ~~~~-P~~~~~KVvIIDEad~Lt~~---------------a~naLLk~LEepp~~~----------v~Il---------- 154 (486)
T PRK14953 111 VSYT-PIKGKYKVYIIDEAHMLTKE---------------AFNALLKTLEEPPPRT----------IFIL---------- 154 (486)
T ss_pred HHhC-cccCCeeEEEEEChhhcCHH---------------HHHHHHHHHhcCCCCe----------EEEE----------
Confidence 4321 12345679999999988432 4577888877542211 1111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+++-+..+.+++.+|+. .+.+++++ .++....+...+......-.++.++.|++.+.|+.+.
T Consensus 155 --~tt~~~kl~~tI~SRc~-~i~f~~ls----------~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~ 216 (486)
T PRK14953 155 --CTTEYDKIPPTILSRCQ-RFIFSKPT----------KEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRD 216 (486)
T ss_pred --EECCHHHHHHHHHHhce-EEEcCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 11223556778888886 57777787 6666666666665444333457889999999997753
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=3.4e-10 Score=107.08 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=100.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+|||||+|||||++|+.+|+.+..+-.. ......++++++.+- .+...++++.+.
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~ 110 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASN------TGVDDIRELREN 110 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHH
Confidence 46778999999999999999999998642100 001123455544321 123346666655
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|++|||+|.|... -.|.|++.|++....+ .++-
T Consensus 111 ~~~~-p~~~~~KVvIIdev~~Lt~~---------------a~naLLk~LEepp~~~-----------~fIl--------- 154 (576)
T PRK14965 111 VKYL-PSRSRYKIFIIDEVHMLSTN---------------AFNALLKTLEEPPPHV-----------KFIF--------- 154 (576)
T ss_pred HHhc-cccCCceEEEEEChhhCCHH---------------HHHHHHHHHHcCCCCe-----------EEEE---------
Confidence 5432 11234569999999988532 4688999998753211 1111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+++-++.|-+.+++|+. .+.|..++ .++-...+...+......-.+..++.|++.+.|+.+.
T Consensus 155 --~t~~~~kl~~tI~SRc~-~~~f~~l~----------~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~ 216 (576)
T PRK14965 155 --ATTEPHKVPITILSRCQ-RFDFRRIP----------LQKIVDRLRYIADQEGISISDAALALVARKGDGSMRD 216 (576)
T ss_pred --EeCChhhhhHHHHHhhh-hhhcCCCC----------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHH
Confidence 23334677788888875 55666666 4443444444444333222458888999999997753
No 131
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.7e-10 Score=103.56 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=98.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc---cccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK---YKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~---~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.|.++|||||||+|||++|+++|+.+..+.... .-...+++++... ......++++++.+... .....+.
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~i~~l~~~~~~~-p~~~~~k 110 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS------NNSVDDIRNLIDQVRIP-PQTGKYK 110 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc------CCCHHHHHHHHHHHhhc-cccCCcE
Confidence 467899999999999999999999986421000 0012233333221 11234566667665431 1123557
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||+|||+|.+... ..+.++..+++....+ +.+. +++....+.+
T Consensus 111 iviIDE~~~l~~~---------------~~~~ll~~le~~~~~~----------~~Il------------~~~~~~kl~~ 153 (367)
T PRK14970 111 IYIIDEVHMLSSA---------------AFNAFLKTLEEPPAHA----------IFIL------------ATTEKHKIIP 153 (367)
T ss_pred EEEEeChhhcCHH---------------HHHHHHHHHhCCCCce----------EEEE------------EeCCcccCCH
Confidence 9999999987432 3567777776532110 0011 1122356677
Q ss_pred HHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 172 TVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 172 ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
++.+|+. .+.++.|+ +++...++...+......-.+..++.|+..+.|+.+.
T Consensus 154 ~l~sr~~-~v~~~~~~----------~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 154 TILSRCQ-IFDFKRIT----------IKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRD 205 (367)
T ss_pred HHHhcce-eEecCCcc----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHH
Confidence 8888875 46788887 5555555555554433322458888899998887753
No 132
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.13 E-value=2.5e-12 Score=99.56 Aligned_cols=84 Identities=29% Similarity=0.363 Sum_probs=51.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc--chhhccchhHH-H-----HHHHHHHHHHHHhcCC
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL--FSKYFSESGKL-V-----QKMFNKIKEAVEYEES 89 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l--~~~~~g~~~~~-~-----~~~f~~a~~~~~~~~~ 89 (256)
+|+|+||||||||++|+.+|+.++. +++.++++.. ....+|.-... - ...+-++. ..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~---------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~------~~ 65 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR---------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM------RK 65 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC---------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH------HE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc---------ceEEEEeccccccccceeeeeecccccccccccccccc------cc
Confidence 4899999999999999999999965 5566655432 22222221110 0 00001111 16
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~ 131 (256)
+.+++|||++...+ .+++.++..+++-
T Consensus 66 ~~il~lDEin~a~~---------------~v~~~L~~ll~~~ 92 (139)
T PF07728_consen 66 GGILVLDEINRAPP---------------EVLESLLSLLEER 92 (139)
T ss_dssp EEEEEESSCGG--H---------------HHHHTTHHHHSSS
T ss_pred eeEEEECCcccCCH---------------HHHHHHHHHHhhC
Confidence 88999999998753 3777777777653
No 133
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.9e-11 Score=110.54 Aligned_cols=172 Identities=20% Similarity=0.271 Sum_probs=98.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc---------hhhccchhHHHHHHHHHHHHHHHhc
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF---------SKYFSESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~---------~~~~g~~~~~~~~~f~~a~~~~~~~ 87 (256)
.-++|+||||+|||+++++||+.+|. .|+.++-.-+. .-|+|.-...+-+-.++|...
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~R---------kfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~---- 417 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGR---------KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVK---- 417 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCC---------CEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCc----
Confidence 44788999999999999999999987 66777654332 224555444454555555532
Q ss_pred CCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCC----CchhhhcccchhhHhhhhcCccCHH
Q psy3997 88 ESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGL----SGRTLRKIPFLTFVKYISNNSVSME 163 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~i~~t 163 (256)
.| +++|||||.+..+-+. + =.++||+.||--++.+..- ..-++..+.|.+ +.
T Consensus 418 -NP-v~LLDEIDKm~ss~rG--------D---PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFia-----------TA 473 (782)
T COG0466 418 -NP-VFLLDEIDKMGSSFRG--------D---PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA-----------TA 473 (782)
T ss_pred -CC-eEEeechhhccCCCCC--------C---hHHHHHhhcCHhhcCchhhccccCccchhheEEEe-----------ec
Confidence 44 7899999999765321 1 2367777777544432110 001222333333 55
Q ss_pred HHHHHHHHHHhhHhhhhhccCCCCCCC--------------------CcchhhhhhhHHHHHHHhcCCCcccccchhHHH
Q psy3997 164 NFLIALEKTVLDLLVEEKSLPLKRNTE--------------------VPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTE 223 (256)
Q Consensus 164 ~~~~~ld~ai~rRf~~~i~~~~p~~~e--------------------~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~ 223 (256)
|..+.|...++.|+. .|.+.-.+.+| .......++....|++.|..+...-+.+..+.+
T Consensus 474 Nsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~k 552 (782)
T COG0466 474 NSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAK 552 (782)
T ss_pred CccccCChHHhccee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHH
Confidence 666777788888754 34444444221 111222334445555555555555555555555
Q ss_pred HHH
Q psy3997 224 LVQ 226 (256)
Q Consensus 224 l~~ 226 (256)
+++
T Consensus 553 i~R 555 (782)
T COG0466 553 ICR 555 (782)
T ss_pred HHH
Confidence 554
No 134
>PRK06620 hypothetical protein; Validated
Probab=99.12 E-value=3.1e-10 Score=94.41 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=85.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeC
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLID 96 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iD 96 (256)
+.++||||||||||++++++|+..+. +.+..... ..+.+ ....+++||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----------~~~~~~~~-----------~~~~~----------~~~d~lliD 92 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----------YIIKDIFF-----------NEEIL----------EKYNAFIIE 92 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----------EEcchhhh-----------chhHH----------hcCCEEEEe
Confidence 67999999999999999999987642 22221100 00111 134689999
Q ss_pred cchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhH
Q psy3997 97 EIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDL 176 (256)
Q Consensus 97 Eid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rR 176 (256)
||+.+-. . .+...++.+.... ..+. +..++... ++ .+ +.+++|
T Consensus 93 di~~~~~---------------~---~lf~l~N~~~e~g--------~~il-----its~~~p~---~l--~l-~~L~SR 135 (214)
T PRK06620 93 DIENWQE---------------P---ALLHIFNIINEKQ--------KYLL-----LTSSDKSR---NF--TL-PDLSSR 135 (214)
T ss_pred ccccchH---------------H---HHHHHHHHHHhcC--------CEEE-----EEcCCCcc---cc--ch-HHHHHH
Confidence 9995410 1 2222333222211 0111 11122111 12 26 778999
Q ss_pred hh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccC
Q psy3997 177 LV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSD 237 (256)
Q Consensus 177 f~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~ 237 (256)
+. ..+.+..|+ .+.|..++++.+......-.++.++.|++..+++++..-+
T Consensus 136 l~~gl~~~l~~pd----------~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 136 IKSVLSILLNSPD----------DELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred HhCCceEeeCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHH
Confidence 97 357888888 7778888877776443333569999999999998765433
No 135
>KOG2004|consensus
Probab=99.12 E-value=4.3e-11 Score=111.62 Aligned_cols=175 Identities=19% Similarity=0.320 Sum_probs=102.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc---------hhhccchhHHHHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF---------SKYFSESGKLVQKMFNKIKEAVEY 86 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~---------~~~~g~~~~~~~~~f~~a~~~~~~ 86 (256)
.+-+.|+||||+|||+++++||+.+|. .|+.++..-+. .-|+|.-...+-+-.+....
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALnR---------kFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t---- 504 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARALNR---------KFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT---- 504 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHhCC---------ceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC----
Confidence 455888999999999999999999987 55665543221 22445444444444444443
Q ss_pred cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCC----CCchhhhcccchhhHhhhhcCccCH
Q psy3997 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTG----LSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g----~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
..-+++|||||.+...-+ ++ =.++||+.||--++.+.. -..-++.++.|+| +
T Consensus 505 --~NPliLiDEvDKlG~g~q--------GD---PasALLElLDPEQNanFlDHYLdVp~DLSkVLFic-----------T 560 (906)
T KOG2004|consen 505 --ENPLILIDEVDKLGSGHQ--------GD---PASALLELLDPEQNANFLDHYLDVPVDLSKVLFIC-----------T 560 (906)
T ss_pred --CCceEEeehhhhhCCCCC--------CC---hHHHHHHhcChhhccchhhhccccccchhheEEEE-----------e
Confidence 334789999999973211 11 236777777754432210 0111223334444 4
Q ss_pred HHHHHHHHHHHhhHhhhhhccCCCCCCC---Ccc-----------------hhhhhhhHHHHHHHhcCCCcccccchhHH
Q psy3997 163 ENFLIALEKTVLDLLVEEKSLPLKRNTE---VPN-----------------TYLHSNQRIHIYLMFCGTSYPLQHSKHFT 222 (256)
Q Consensus 163 t~~~~~ld~ai~rRf~~~i~~~~p~~~e---~~~-----------------~~~~~~~R~~i~~~~~~~~~~~~~~~~~~ 222 (256)
.|..+.|.++++.|+. .|.++=...+| |.. ..+.++.-..+++.||.+...-++++.++
T Consensus 561 AN~idtIP~pLlDRME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~ie 639 (906)
T KOG2004|consen 561 ANVIDTIPPPLLDRME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIE 639 (906)
T ss_pred ccccccCChhhhhhhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444667788887765 23333333232 111 12234556678888888777777777777
Q ss_pred HHHHhC
Q psy3997 223 ELVQSH 228 (256)
Q Consensus 223 ~l~~~t 228 (256)
.+.+..
T Consensus 640 kI~Rk~ 645 (906)
T KOG2004|consen 640 KICRKV 645 (906)
T ss_pred HHHHHH
Confidence 776543
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=6.3e-10 Score=105.78 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=94.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-----------------ccccceEEEEeccccchhhccchhHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-----------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~-----------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~ 78 (256)
+..+||+||||||||++|+++|+.+...... ......+++++.. ...+...++++..
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~ 111 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIE 111 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHH
Confidence 4679999999999999999999998652100 0001124444332 1223345777776
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcC
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 158 (256)
.+... .......|++|||+|.|.. ...+.||+.|++....+ .++.
T Consensus 112 ~a~~~-p~~~~~KViIIDEad~Lt~---------------~a~naLLK~LEePp~~t-----------vfIL-------- 156 (620)
T PRK14948 112 RAQFA-PVQARWKVYVIDECHMLST---------------AAFNALLKTLEEPPPRV-----------VFVL-------- 156 (620)
T ss_pred HHhhC-hhcCCceEEEEECccccCH---------------HHHHHHHHHHhcCCcCe-----------EEEE--------
Confidence 65432 1123456999999999843 25688899988643211 1111
Q ss_pred ccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 159 SVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
+++.+..+-+.+++|+.. +.|..++ .+.-...+.+.+......-.+..+..+++.+.|+.+
T Consensus 157 ---~t~~~~~llpTIrSRc~~-~~f~~l~----------~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr 217 (620)
T PRK14948 157 ---ATTDPQRVLPTIISRCQR-FDFRRIP----------LEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLR 217 (620)
T ss_pred ---EeCChhhhhHHHHhheeE-EEecCCC----------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 122235566788888754 4555555 333233333333332222234668888888888664
No 137
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.11 E-value=1.7e-10 Score=87.78 Aligned_cols=79 Identities=28% Similarity=0.423 Sum_probs=56.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh--------------ccchhHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY--------------FSESGKLVQKMFNKIK 81 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~--------------~g~~~~~~~~~f~~a~ 81 (256)
+..++++||||||||++++.+|+.+... ...+++++++...... ........+.++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC------CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999998652 1247888876543321 1233444556666666
Q ss_pred HHHHhcCCeEEEEeCcchhhhhhh
Q psy3997 82 EAVEYEESLVCLLIDEIESLTRAR 105 (256)
Q Consensus 82 ~~~~~~~~p~Ii~iDEid~l~~~r 105 (256)
.. .+.+|++||++.+....
T Consensus 76 ~~-----~~~viiiDei~~~~~~~ 94 (148)
T smart00382 76 KL-----KPDVLILDEITSLLDAE 94 (148)
T ss_pred hc-----CCCEEEEECCcccCCHH
Confidence 43 47999999999987653
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=8e-10 Score=103.98 Aligned_cols=164 Identities=20% Similarity=0.214 Sum_probs=96.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+|||||||+|||++|+++|+.+..+... ......++++++.. ..+...++++.+.
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~ 110 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEE 110 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHH
Confidence 36679999999999999999999998642100 00011233333211 0112234444443
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|++|||+|.+.. ...+.|++.|+..... ..++.
T Consensus 111 ~~~~-p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~LEepp~~-----------~vfI~--------- 154 (563)
T PRK06647 111 IMFP-PASSRYRVYIIDEVHMLSN---------------SAFNALLKTIEEPPPY-----------IVFIF--------- 154 (563)
T ss_pred HHhc-hhcCCCEEEEEEChhhcCH---------------HHHHHHHHhhccCCCC-----------EEEEE---------
Confidence 3321 1134567999999999843 2567888888753221 11111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
+++-+..+.+++++|+. .+.+..++ .+...+.++..+......-.+..++.|++...|+.+
T Consensus 155 --~tte~~kL~~tI~SRc~-~~~f~~l~----------~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 155 --ATTEVHKLPATIKSRCQ-HFNFRLLS----------LEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVR 215 (563)
T ss_pred --ecCChHHhHHHHHHhce-EEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 11223567788899987 45677676 555555555555433322245888889999998775
No 139
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.09 E-value=6.2e-10 Score=99.80 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=106.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
...++||||+|.|||+|+++++++... ..++..+++++..++...++...-. +.+.++-..+ .-.+++|
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~----~~~~a~v~y~~se~f~~~~v~a~~~------~~~~~Fk~~y-~~dlllI 181 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALA----NGPNARVVYLTSEDFTNDFVKALRD------NEMEKFKEKY-SLDLLLI 181 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHh----hCCCceEEeccHHHHHHHHHHHHHh------hhHHHHHHhh-ccCeeee
Confidence 456999999999999999999999865 3367789999998877665432211 1111111123 4568999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
|+|+.+..+.. ...+|...+..+..... .++..+ .+.+ .-...+++-+++
T Consensus 182 DDiq~l~gk~~-------------~qeefFh~FN~l~~~~k--------qIvlts-----dr~P----~~l~~~~~rL~S 231 (408)
T COG0593 182 DDIQFLAGKER-------------TQEEFFHTFNALLENGK--------QIVLTS-----DRPP----KELNGLEDRLRS 231 (408)
T ss_pred chHhHhcCChh-------------HHHHHHHHHHHHHhcCC--------EEEEEc-----CCCc----hhhccccHHHHH
Confidence 99999976532 22333333333332211 111111 1100 111335677889
Q ss_pred Hhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 176 LLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 176 Rf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
||. ..+.+.+|+ .+.|..++..........-.+..+..+++..+.+++
T Consensus 232 R~~~Gl~~~I~~Pd----------~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvR 281 (408)
T COG0593 232 RLEWGLVVEIEPPD----------DETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVR 281 (408)
T ss_pred HHhceeEEeeCCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHH
Confidence 997 667788888 899999999866666555566888888888887663
No 140
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.8e-10 Score=110.09 Aligned_cols=86 Identities=28% Similarity=0.398 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh------------ccchhHHHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------------FSESGKLVQKMFNKIKEAV 84 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------------~g~~~~~~~~~f~~a~~~~ 84 (256)
..+||.||+|+|||.+|+++|..+.. +...++.+++|++..++ +|..+.- .+-+.++
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg------~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVR--- 590 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFG------DEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVR--- 590 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcC------CCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhh---
Confidence 45888999999999999999999853 34678999999886654 3433211 1223333
Q ss_pred HhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 85 EYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
.+.++||+||||++..+. |+|.||+.||.
T Consensus 591 --r~PySViLlDEIEKAHpd---------------V~nilLQVlDd 619 (786)
T COG0542 591 --RKPYSVILLDEIEKAHPD---------------VFNLLLQVLDD 619 (786)
T ss_pred --cCCCeEEEechhhhcCHH---------------HHHHHHHHhcC
Confidence 346789999999998653 99999999973
No 141
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=9.4e-10 Score=104.01 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=99.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc--------------------cccceEEEEeccccchhhccchhHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK--------------------YKITEFIEINSHSLFSKYFSESGKLVQ 74 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~--------------------~~~~~~~~v~~~~l~~~~~g~~~~~~~ 74 (256)
.+..+||+||+|+|||++|+.+|+.+....... .....++++++..- .+...++
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~------~gvd~IR 118 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASH------TGVDDIR 118 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccccc------CCHHHHH
Confidence 367899999999999999999999986431000 00112444443311 1233466
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhh
Q psy3997 75 KMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKY 154 (256)
Q Consensus 75 ~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~ 154 (256)
++.+.+... .......|++|||+|.|... -.+.|++.|++....+ .+++
T Consensus 119 eIie~~~~~-P~~a~~KVvIIDEad~Ls~~---------------a~naLLKtLEePp~~~---------~fIl------ 167 (598)
T PRK09111 119 EIIESVRYR-PVSARYKVYIIDEVHMLSTA---------------AFNALLKTLEEPPPHV---------KFIF------ 167 (598)
T ss_pred HHHHHHHhc-hhcCCcEEEEEEChHhCCHH---------------HHHHHHHHHHhCCCCe---------EEEE------
Confidence 776665432 11335679999999998532 4688888888653221 1111
Q ss_pred hhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 155 ISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 155 ~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+++-...+-+.+++|+. .+.+..++ +++-...++..+......-.+..++.|++.+.|+.+.
T Consensus 168 -------~tte~~kll~tI~SRcq-~~~f~~l~----------~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~ 229 (598)
T PRK09111 168 -------ATTEIRKVPVTVLSRCQ-RFDLRRIE----------ADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRD 229 (598)
T ss_pred -------EeCChhhhhHHHHhhee-EEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 11112335556788874 67788777 5555555555554443333457888888888887643
No 142
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.08 E-value=2.4e-10 Score=107.12 Aligned_cols=46 Identities=26% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh-cccccceEEEEeccc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ-SKYKITEFIEINSHS 60 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~-~~~~~~~~~~v~~~~ 60 (256)
.+..+||+||||||||++|+++.+....... ......+|++++|..
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 3678999999999999999999987643211 011246899999864
No 143
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.7e-09 Score=98.16 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=92.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-----------------------ccccceEEEEeccccchhhccchhHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-----------------------KYKITEFIEINSHSLFSKYFSESGKL 72 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~-----------------------~~~~~~~~~v~~~~l~~~~~g~~~~~ 72 (256)
|..+||+||||+|||++|+++|+.+..+... ......++++++... .....
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~ 111 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDD 111 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHH
Confidence 6679999999999999999999999652100 000012333332111 01223
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhH
Q psy3997 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFV 152 (256)
Q Consensus 73 ~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~ 152 (256)
++++.+.+... .......|++|||+|.+... -.+.|++.++.....+ .+.+
T Consensus 112 Ir~l~~~~~~~-p~~~~~kvvIIdea~~l~~~---------------~~~~LLk~LEep~~~t---------~~Il---- 162 (397)
T PRK14955 112 IRLLRENVRYG-PQKGRYRVYIIDEVHMLSIA---------------AFNAFLKTLEEPPPHA---------IFIF---- 162 (397)
T ss_pred HHHHHHHHhhc-hhcCCeEEEEEeChhhCCHH---------------HHHHHHHHHhcCCCCe---------EEEE----
Confidence 44444443211 11234569999999998532 3466777776543211 0111
Q ss_pred hhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCc
Q psy3997 153 KYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 153 ~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~ 232 (256)
.++-...+-+++.+|+. .+.++.++ ++.-...+...+......-.++.++.|+..+.|+.
T Consensus 163 ---------~t~~~~kl~~tl~sR~~-~v~f~~l~----------~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~l 222 (397)
T PRK14955 163 ---------ATTELHKIPATIASRCQ-RFNFKRIP----------LEEIQQQLQGICEAEGISVDADALQLIGRKAQGSM 222 (397)
T ss_pred ---------EeCChHHhHHHHHHHHH-HhhcCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 11112456677888876 56677676 44434444444433332225588889999999987
Q ss_pred ccc
Q psy3997 233 KVT 235 (256)
Q Consensus 233 ~~~ 235 (256)
+.+
T Consensus 223 r~a 225 (397)
T PRK14955 223 RDA 225 (397)
T ss_pred HHH
Confidence 644
No 144
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=1.1e-09 Score=100.73 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=96.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc----------------cccceEEEEeccccchhhccchhHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK----------------YKITEFIEINSHSLFSKYFSESGKLVQKMFN 78 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~----------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~ 78 (256)
.+..+|||||||+|||++|+.+|+.+..+-... .....++++++... . +-..++++-+
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~ 111 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINE 111 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHH
Confidence 367799999999999999999999985421000 00123444443211 1 1123444333
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcC
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 158 (256)
.+... .......||+|||+|.+... ..+.|++.|+.....+ .++.
T Consensus 112 ~l~~~-~~~~~~kvvIIdead~lt~~---------------~~n~LLk~lEep~~~~-----------~~Il-------- 156 (451)
T PRK06305 112 TVLFT-PSKSRYKIYIIDEVHMLTKE---------------AFNSLLKTLEEPPQHV-----------KFFL-------- 156 (451)
T ss_pred HHHhh-hhcCCCEEEEEecHHhhCHH---------------HHHHHHHHhhcCCCCc-----------eEEE--------
Confidence 32211 11346789999999998532 4578888887643211 1111
Q ss_pred ccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 159 SVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+++....+-+++++|+. .+.++.++ +++-...+...+......-.+..++.|++.+.|+.+.+
T Consensus 157 ---~t~~~~kl~~tI~sRc~-~v~f~~l~----------~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 157 ---ATTEIHKIPGTILSRCQ-KMHLKRIP----------EETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred ---EeCChHhcchHHHHhce-EEeCCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 22333567788898886 46777777 55444444444433222224577888999999977643
No 145
>PRK08116 hypothetical protein; Validated
Probab=99.07 E-value=1.8e-09 Score=92.89 Aligned_cols=72 Identities=26% Similarity=0.298 Sum_probs=48.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc----hhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE----SGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~----~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
+.+++|+|+||||||+||.++|+++-. .+.++++++..++...+... ......++++. .....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~------~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~-------l~~~d 180 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE------KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS-------LVNAD 180 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH-------hcCCC
Confidence 467999999999999999999999854 24577888887765543211 10111122222 22556
Q ss_pred EEEeCcchh
Q psy3997 92 CLLIDEIES 100 (256)
Q Consensus 92 Ii~iDEid~ 100 (256)
+|+|||+..
T Consensus 181 lLviDDlg~ 189 (268)
T PRK08116 181 LLILDDLGA 189 (268)
T ss_pred EEEEecccC
Confidence 999999954
No 146
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=2e-09 Score=100.09 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=98.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc---------------cccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK---------------YKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~---------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+..+|||||||+|||++|+++|+.+..+-... .....++++++++- .+-..++++.+.
T Consensus 35 l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~ 108 (535)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQ 108 (535)
T ss_pred CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHH
Confidence 466789999999999999999999985311000 01123455543221 112335554443
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......|++|||+|.+.. ...+.||+.|+.....+ .+.+
T Consensus 109 ~~~~-P~~~~~KVvIIDEad~Lt~---------------~A~NALLK~LEEpp~~t---------~FIL----------- 152 (535)
T PRK08451 109 TKYK-PSMARFKIFIIDEVHMLTK---------------EAFNALLKTLEEPPSYV---------KFIL----------- 152 (535)
T ss_pred HhhC-cccCCeEEEEEECcccCCH---------------HHHHHHHHHHhhcCCce---------EEEE-----------
Confidence 3211 1123456999999999853 25688899998753211 1111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+++-+..+-+++++|.. .+.+..++ .++-...+...+......-.+..++.|++...|+.+.+
T Consensus 153 --~ttd~~kL~~tI~SRc~-~~~F~~Ls----------~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 153 --ATTDPLKLPATILSRTQ-HFRFKQIP----------QNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred --EECChhhCchHHHhhce-eEEcCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Confidence 11223667788899965 66777777 44444444445544333324588899999999977444
No 147
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.02 E-value=2.3e-10 Score=104.51 Aligned_cols=140 Identities=15% Similarity=0.219 Sum_probs=76.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc-ccchhhccch-hHHH--HHHHHHHHHHHHhcCCeE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH-SLFSKYFSES-GKLV--QKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~-~l~~~~~g~~-~~~~--~~~f~~a~~~~~~~~~p~ 91 (256)
...+||+||||||||++|++++...+.. . .|..+.+. ......+|.. -... ..-|...... .-....
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~------~-~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G--~L~~A~ 109 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNA------R-AFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSG--YLPEAE 109 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhccc------C-cceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCC--cccccc
Confidence 5779999999999999999999987531 1 33433332 1223334432 0111 0112111100 000234
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
++|+|||+.+.+ .+.+.||+.|++-.-...+.......++.+.+ +|.+.- .....+
T Consensus 110 lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A------TN~LPE---~g~~le 165 (498)
T PRK13531 110 IVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLVTA------SNELPE---ADSSLE 165 (498)
T ss_pred EEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE------CCCCcc---cCCchH
Confidence 899999987654 47899999995433222222222222222222 122100 112345
Q ss_pred HHhhHhhhhhccCCCCC
Q psy3997 172 TVLDLLVEEKSLPLKRN 188 (256)
Q Consensus 172 ai~rRf~~~i~~~~p~~ 188 (256)
++..||..++.+|+|+.
T Consensus 166 AL~DRFliri~vp~l~~ 182 (498)
T PRK13531 166 ALYDRMLIRLWLDKVQD 182 (498)
T ss_pred HhHhhEEEEEECCCCCc
Confidence 88999999999999973
No 148
>PHA02244 ATPase-like protein
Probab=99.00 E-value=3.8e-10 Score=99.80 Aligned_cols=137 Identities=15% Similarity=0.201 Sum_probs=73.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhcc---chhHHHH-HHHHHHHHHHHhcCC
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFS---ESGKLVQ-KMFNKIKEAVEYEES 89 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g---~~~~~~~-~~f~~a~~~~~~~~~ 89 (256)
..+..+||+||||||||++|+++|+.++. +|+.++...-.....| ..+ ... .-|-.+. ..
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~---------pfv~In~l~d~~~L~G~i~~~g-~~~dgpLl~A~------~~ 180 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDL---------DFYFMNAIMDEFELKGFIDANG-KFHETPFYEAF------KK 180 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCC---------CEEEEecChHHHhhcccccccc-cccchHHHHHh------hc
Confidence 34677999999999999999999999875 5676664211111111 111 111 1111221 26
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch-hhcCCCCCchhhhcccchhhHhhhhcCcc--CHHHH-
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL-KKKSTGLSGRTLRKIPFLTFVKYISNNSV--SMENF- 165 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~-~~~~~g~~g~~~~~~~~~~~~~~~~~~~i--~~t~~- 165 (256)
+.+++|||++.+.+. +...|...++.- .....+.... -.++.+++ +.|.. .+.+.
T Consensus 181 GgvLiLDEId~a~p~---------------vq~~L~~lLd~r~l~l~g~~i~~-h~~FRlIA-----TsN~~~~G~~~~y 239 (383)
T PHA02244 181 GGLFFIDEIDASIPE---------------ALIIINSAIANKFFDFADERVTA-HEDFRVIS-----AGNTLGKGADHIY 239 (383)
T ss_pred CCEEEEeCcCcCCHH---------------HHHHHHHHhccCeEEecCcEEec-CCCEEEEE-----eeCCCccCccccc
Confidence 689999999988653 444555555421 1111110000 01111111 22221 11121
Q ss_pred --HHHHHHHHhhHhhhhhccCCCCC
Q psy3997 166 --LIALEKTVLDLLVEEKSLPLKRN 188 (256)
Q Consensus 166 --~~~ld~ai~rRf~~~i~~~~p~~ 188 (256)
...+++|++.||. .+.++.|+.
T Consensus 240 ~G~k~L~~AllDRFv-~I~~dyp~~ 263 (383)
T PHA02244 240 VARNKIDGATLDRFA-PIEFDYDEK 263 (383)
T ss_pred CCCcccCHHHHhhcE-EeeCCCCcH
Confidence 2568999999997 588888873
No 149
>PRK09087 hypothetical protein; Validated
Probab=99.00 E-value=8.4e-10 Score=92.58 Aligned_cols=147 Identities=15% Similarity=0.101 Sum_probs=90.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
.+.++|+||+|+|||||++++|+..+. .+++..++... ++.... . .+|+|
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-----------~~i~~~~~~~~-----------~~~~~~-------~-~~l~i 93 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-----------LLIHPNEIGSD-----------AANAAA-------E-GPVLI 93 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-----------EEecHHHcchH-----------HHHhhh-------c-CeEEE
Confidence 345999999999999999999987632 35544322111 111111 1 47889
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH-HHHHHh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA-LEKTVL 174 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~-ld~ai~ 174 (256)
||++.+... ..+|...++.+..... .+.+.+ ++ .+-.+. ..+.++
T Consensus 94 DDi~~~~~~----------------~~~lf~l~n~~~~~g~--------~ilits-----~~-----~p~~~~~~~~dL~ 139 (226)
T PRK09087 94 EDIDAGGFD----------------ETGLFHLINSVRQAGT--------SLLMTS-----RL-----WPSSWNVKLPDLK 139 (226)
T ss_pred ECCCCCCCC----------------HHHHHHHHHHHHhCCC--------eEEEEC-----CC-----ChHHhccccccHH
Confidence 999976211 0224444444332210 111111 11 111122 256788
Q ss_pred hHhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccccc
Q psy3997 175 DLLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTS 236 (256)
Q Consensus 175 rRf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~ 236 (256)
+|+. ..+.+..|+ ++.|..+++..+......-.++.++.|++..+++++...
T Consensus 140 SRl~~gl~~~l~~pd----------~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 140 SRLKAATVVEIGEPD----------DALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHHhCCceeecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHH
Confidence 9997 788888999 999999999888765444466999999999998765443
No 150
>PRK12377 putative replication protein; Provisional
Probab=98.99 E-value=3e-09 Score=90.20 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=49.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccch--hHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSES--GKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~--~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
..+++|+||||||||+||.++|+++.. .+..+++++..++...+...- .....++++. .....+|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~------~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~-------l~~~dLL 167 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA------KGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE-------LCKVDLL 167 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH------cCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH-------hcCCCEE
Confidence 468999999999999999999999864 245677777777665431110 0011122222 3477899
Q ss_pred EeCcchhh
Q psy3997 94 LIDEIESL 101 (256)
Q Consensus 94 ~iDEid~l 101 (256)
+|||+...
T Consensus 168 iIDDlg~~ 175 (248)
T PRK12377 168 VLDEIGIQ 175 (248)
T ss_pred EEcCCCCC
Confidence 99999764
No 151
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=4.5e-09 Score=99.80 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=92.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc----------------cccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK----------------YKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~----------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
+..+|||||||+|||++|+.+|+.+....... .....+++++.... .+...++++.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~ 111 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASH------TSVDDAREIIER 111 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecccc------CCHHHHHHHHHH
Confidence 55689999999999999999999986321000 00112344443211 112234554443
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .......||+|||+|.|.. ...+.|++.|++....+ .++.
T Consensus 112 ~~~~-p~~~~~kVvIIDEa~~L~~---------------~a~naLLk~LEepp~~t-----------v~Il--------- 155 (585)
T PRK14950 112 VQFR-PALARYKVYIIDEVHMLST---------------AAFNALLKTLEEPPPHA-----------IFIL--------- 155 (585)
T ss_pred HhhC-cccCCeEEEEEeChHhCCH---------------HHHHHHHHHHhcCCCCe-----------EEEE---------
Confidence 3321 1123567999999998843 24677888887643211 1111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.++..+.+-+.+.+|+. ++.|+.++ .++....+.+.+......-.+..+..|++.+.|+..
T Consensus 156 --~t~~~~kll~tI~SR~~-~i~f~~l~----------~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr 216 (585)
T PRK14950 156 --ATTEVHKVPATILSRCQ-RFDFHRHS----------VADMAAHLRKIAAAEGINLEPGALEAIARAATGSMR 216 (585)
T ss_pred --EeCChhhhhHHHHhccc-eeeCCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 11222445567777765 46677776 555455555555443322244678888888888764
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.96 E-value=2.2e-09 Score=105.60 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=59.5
Q ss_pred Cce-EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh------------hccchhHHHHHHHHHHHH
Q psy3997 16 NRV-VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK------------YFSESGKLVQKMFNKIKE 82 (256)
Q Consensus 16 ~~~-iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~------------~~g~~~~~~~~~f~~a~~ 82 (256)
|.+ +||+||||||||++|+++|+.+.. ....++.++++++..+ |+|..+.. .+.+.++
T Consensus 595 p~~~~lf~Gp~GvGKT~lA~~La~~l~~------~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~- 665 (852)
T TIGR03345 595 PLGVFLLVGPSGVGKTETALALAELLYG------GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVR- 665 (852)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhC------CCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHH-
Confidence 454 899999999999999999999842 2347788888765332 33332211 1222223
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
.+.++||+|||+|.+.+ .+.+.|++.+|.
T Consensus 666 ----~~p~svvllDEieka~~---------------~v~~~Llq~ld~ 694 (852)
T TIGR03345 666 ----RKPYSVVLLDEVEKAHP---------------DVLELFYQVFDK 694 (852)
T ss_pred ----hCCCcEEEEechhhcCH---------------HHHHHHHHHhhc
Confidence 24779999999997643 377888888864
No 153
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.96 E-value=5.7e-09 Score=92.10 Aligned_cols=122 Identities=21% Similarity=0.267 Sum_probs=72.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc---hhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE---SGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~---~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
..+++|+||||||||+|+.++|+++-. .+..+++++..++...+... ........++. .....+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~------~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~-------l~~~DL 249 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLD------RGKSVIYRTADELIEILREIRFNNDKELEEVYDL-------LINCDL 249 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH-------hccCCE
Confidence 578999999999999999999999854 34578888888776543210 00011111222 225679
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
|+|||+.....+ ......|...++.-..... .+ .+++| ....++...+++.
T Consensus 250 LIIDDlG~e~~t-------------~~~~~~Lf~iin~R~~~~k--------~t-------IiTSN-l~~~el~~~~~er 300 (329)
T PRK06835 250 LIIDDLGTEKIT-------------EFSKSELFNLINKRLLRQK--------KM-------IISTN-LSLEELLKTYSER 300 (329)
T ss_pred EEEeccCCCCCC-------------HHHHHHHHHHHHHHHHCCC--------CE-------EEECC-CCHHHHHHHHhHH
Confidence 999999775321 1233555555554332110 00 11222 2345566667788
Q ss_pred HhhHhhh
Q psy3997 173 VLDLLVE 179 (256)
Q Consensus 173 i~rRf~~ 179 (256)
+.+|+..
T Consensus 301 i~SRL~~ 307 (329)
T PRK06835 301 ISSRLLG 307 (329)
T ss_pred HHHHHHc
Confidence 8888764
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.95 E-value=2.9e-09 Score=104.86 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=58.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh------------hccchhHHHHHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK------------YFSESGKLVQKMFNKIKEAVE 85 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~ 85 (256)
.+||+||||||||++|+++|+.+-. ....++.++++++... |+|..+ ...+.+.++.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~------~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~--- 609 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFG------SEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRK--- 609 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcC------CccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHh---
Confidence 4899999999999999999998732 2346788887765321 222222 1123333332
Q ss_pred hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 86 YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
...+||+|||+|.+.+ .+.+.|++.||.
T Consensus 610 --~p~~VvllDeieka~~---------------~v~~~Llq~le~ 637 (821)
T CHL00095 610 --KPYTVVLFDEIEKAHP---------------DIFNLLLQILDD 637 (821)
T ss_pred --CCCeEEEECChhhCCH---------------HHHHHHHHHhcc
Confidence 3558999999998754 378899998875
No 155
>PRK08181 transposase; Validated
Probab=98.95 E-value=1.5e-09 Score=93.09 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=52.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc-hhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE-SGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
...+++|+||||||||+|+.++|+++-. .+..+++++..++...+... ......+.++.. ..+.+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~------~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l-------~~~dLL 171 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE------NGWRVLFTRTTDLVQKLQVARRELQLESAIAKL-------DKFDLL 171 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH------cCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH-------hcCCEE
Confidence 4678999999999999999999998743 24567888887776654211 111223333332 267899
Q ss_pred EeCcchhhhh
Q psy3997 94 LIDEIESLTR 103 (256)
Q Consensus 94 ~iDEid~l~~ 103 (256)
+|||++.+..
T Consensus 172 IIDDlg~~~~ 181 (269)
T PRK08181 172 ILDDLAYVTK 181 (269)
T ss_pred EEeccccccC
Confidence 9999987643
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.94 E-value=2.4e-09 Score=105.70 Aligned_cols=87 Identities=25% Similarity=0.365 Sum_probs=59.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh------------ccchhHHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------------FSESGKLVQKMFNKIKEA 83 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------------~g~~~~~~~~~f~~a~~~ 83 (256)
...+||+||||||||++|+++|+.+.. ....++.++++++.... +|..+ -..+...++
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~------~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~-- 664 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFD------DEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVR-- 664 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcC------CCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHH--
Confidence 345899999999999999999998742 23478888887654322 12111 011222222
Q ss_pred HHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 84 VEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
....+||+||||+.+.+ .+.+.|++.|+.
T Consensus 665 ---~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~ 693 (852)
T TIGR03346 665 ---RKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDD 693 (852)
T ss_pred ---cCCCcEEEEeccccCCH---------------HHHHHHHHHHhc
Confidence 23557999999998854 378889988864
No 157
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.94 E-value=3.4e-09 Score=93.18 Aligned_cols=132 Identities=22% Similarity=0.282 Sum_probs=80.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhccc---------------ccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKY---------------KITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~---------------~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.|..+||+||||||||++|.++|+++........ ....++++++++....- .....++++-+.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~ 100 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEF 100 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHH
Confidence 3557999999999999999999999973221000 12478899988764421 112223332222
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
.... ......-||+|||+|.+... -.|.++..++.....+. .
T Consensus 101 ~~~~-~~~~~~kviiidead~mt~~---------------A~nallk~lEep~~~~~----------------------~ 142 (325)
T COG0470 101 LSES-PLEGGYKVVIIDEADKLTED---------------AANALLKTLEEPPKNTR----------------------F 142 (325)
T ss_pred hccC-CCCCCceEEEeCcHHHHhHH---------------HHHHHHHHhccCCCCeE----------------------E
Confidence 2111 00245679999999999763 45888888887654331 1
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCC
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
+..+|.++.+-+.|++|+... .|++|+
T Consensus 143 il~~n~~~~il~tI~SRc~~i-~f~~~~ 169 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRI-RFKPPS 169 (325)
T ss_pred EEEcCChhhccchhhhcceee-ecCCch
Confidence 223455566666788876643 333344
No 158
>PRK04132 replication factor C small subunit; Provisional
Probab=98.92 E-value=4e-09 Score=102.57 Aligned_cols=159 Identities=12% Similarity=0.130 Sum_probs=104.4
Q ss_pred EEEEc--CCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc-CCeEEEEe
Q psy3997 19 VLLHG--PPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE-ESLVCLLI 95 (256)
Q Consensus 19 iLL~G--ppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~-~~p~Ii~i 95 (256)
-+..| |++.||||+|+++|+++..+ ....+++++|+++..+ -..++++.+.+....... ....|++|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGE----NWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcc----cccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 35668 99999999999999998321 0134799999987422 224666655544321111 13469999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.|... -.+.|++.|+...... .+ +..+|.++.+-+++++
T Consensus 637 DEaD~Lt~~---------------AQnALLk~lEep~~~~-----------~F-----------ILi~N~~~kIi~tIrS 679 (846)
T PRK04132 637 DEADALTQD---------------AQQALRRTMEMFSSNV-----------RF-----------ILSCNYSSKIIEPIQS 679 (846)
T ss_pred ECcccCCHH---------------HHHHHHHHhhCCCCCe-----------EE-----------EEEeCChhhCchHHhh
Confidence 999999543 4588999998754321 11 2234666778888999
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
|+. .+.|+.|+ +++-...++..+......-.+..++.|++.+.|+.+..
T Consensus 680 RC~-~i~F~~ls----------~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 680 RCA-IFRFRPLR----------DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred hce-EEeCCCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 974 55677776 55555556656654332224688999999999987544
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.92 E-value=1.4e-08 Score=84.93 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=88.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
+..++||+|+.|||||++++++.+++.. .+..+++|...++.. +-+++..++. ...+-|||
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~------~GLRlIev~k~~L~~---------l~~l~~~l~~----~~~kFIlf 111 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYAD------QGLRLIEVSKEDLGD---------LPELLDLLRD----RPYKFILF 111 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhh------cCceEEEECHHHhcc---------HHHHHHHHhc----CCCCEEEE
Confidence 4788999999999999999999999875 356889988766533 4556665553 44678999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhh---------hc----CccC
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYI---------SN----NSVS 161 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~---------~~----~~i~ 161 (256)
+|++.. .. . + .-...|-..|||--. ..+.++.+.+....- +. ..+
T Consensus 112 ~DDLsF--e~-------~-d----~~yk~LKs~LeGgle-------~~P~NvliyATSNRRHLv~E~~~d~~~~~~~ei- 169 (249)
T PF05673_consen 112 CDDLSF--EE-------G-D----TEYKALKSVLEGGLE-------ARPDNVLIYATSNRRHLVPESFSDREDIQDDEI- 169 (249)
T ss_pred ecCCCC--CC-------C-c----HHHHHHHHHhcCccc-------cCCCcEEEEEecchhhccchhhhhccCCCcccc-
Confidence 998652 11 1 1 123445455554322 122333333322111 00 011
Q ss_pred HHHHHHHHHH--HHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC
Q psy3997 162 MENFLIALEK--TVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT 211 (256)
Q Consensus 162 ~t~~~~~ld~--ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~ 211 (256)
+.-+.+++ ++..||...+.|..|+ .+.=.+|.+.+++.
T Consensus 170 --h~~d~~eEklSLsDRFGL~l~F~~~~----------q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 170 --HPSDTIEEKLSLSDRFGLWLSFYPPD----------QEEYLAIVRHYAER 209 (249)
T ss_pred --CcchHHHHHHhHHHhCCcEEEecCCC----------HHHHHHHHHHHHHH
Confidence 11123333 3566999999999999 66666666666643
No 160
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.4e-08 Score=96.26 Aligned_cols=167 Identities=14% Similarity=0.163 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-----------------------ccccceEEEEeccccchhhccchhH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-----------------------KYKITEFIEINSHSLFSKYFSESGK 71 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~-----------------------~~~~~~~~~v~~~~l~~~~~g~~~~ 71 (256)
.+.++||+||||||||++|+.+|+.+...... .+....|+++++... .+..
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd 110 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN------NSVD 110 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEeccccc------CCHH
Confidence 36679999999999999999999999652100 000112333332110 0123
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhh
Q psy3997 72 LVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTF 151 (256)
Q Consensus 72 ~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~ 151 (256)
.++++.+.+... ......-|++|||+|.+... -.+.|++.|+.....+ .++
T Consensus 111 ~Ir~l~e~~~~~-P~~~~~KVvIIdEad~Lt~~---------------a~naLLK~LEePp~~t-----------v~I-- 161 (620)
T PRK14954 111 DIRQLRENVRYG-PQKGRYRVYIIDEVHMLSTA---------------AFNAFLKTLEEPPPHA-----------IFI-- 161 (620)
T ss_pred HHHHHHHHHHhh-hhcCCCEEEEEeChhhcCHH---------------HHHHHHHHHhCCCCCe-----------EEE--
Confidence 355544444211 11234569999999998532 3577888887653211 011
Q ss_pred HhhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 152 VKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 152 ~~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
+ +++....+-+.+.+|.. .+.+..++ +++-...+...+......-.+..++.|++.+.|+
T Consensus 162 ---L------~t~~~~kLl~TI~SRc~-~vef~~l~----------~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gd 221 (620)
T PRK14954 162 ---F------ATTELHKIPATIASRCQ-RFNFKRIP----------LDEIQSQLQMICRAEGIQIDADALQLIARKAQGS 221 (620)
T ss_pred ---E------EeCChhhhhHHHHhhce-EEecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 0 11222566677787764 56666666 4443333343443322222457888899999997
Q ss_pred ccccc
Q psy3997 232 CKVTS 236 (256)
Q Consensus 232 ~~~~~ 236 (256)
.+.+.
T Consensus 222 lr~al 226 (620)
T PRK14954 222 MRDAQ 226 (620)
T ss_pred HHHHH
Confidence 76443
No 161
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.90 E-value=8.2e-09 Score=87.36 Aligned_cols=72 Identities=25% Similarity=0.380 Sum_probs=50.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc---hhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE---SGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~---~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.+++|+|+||||||+++.++|+++.. .+..+++++..++...+... ......++++. .....+|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~------~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~-------l~~~dlL 166 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL------RGKSVLIITVADIMSAMKDTFSNSETSEEQLLND-------LSNVDLL 166 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH-------hccCCEE
Confidence 58999999999999999999999854 24577888887776543221 11112233332 2267899
Q ss_pred EeCcchhh
Q psy3997 94 LIDEIESL 101 (256)
Q Consensus 94 ~iDEid~l 101 (256)
+|||++..
T Consensus 167 vIDDig~~ 174 (244)
T PRK07952 167 VIDEIGVQ 174 (244)
T ss_pred EEeCCCCC
Confidence 99999875
No 162
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=2.2e-08 Score=89.16 Aligned_cols=167 Identities=14% Similarity=0.213 Sum_probs=90.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-ccc--------cc------------eEEEEecc-ccch-hh-ccchhH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-KYK--------IT------------EFIEINSH-SLFS-KY-FSESGK 71 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~-~~~--------~~------------~~~~v~~~-~l~~-~~-~g~~~~ 71 (256)
|..+||+||+|+|||++|+.+|+.+...... ..+ .+ .++.+... +... +. ..-+..
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd 124 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVD 124 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHH
Confidence 5579999999999999999999998541000 000 00 01112110 0000 00 000112
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhh
Q psy3997 72 LVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTF 151 (256)
Q Consensus 72 ~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~ 151 (256)
.++++-+..... ...+...|++|||+|.|... -.|.||+.|++..... .+.
T Consensus 125 ~iR~l~~~l~~~-~~~g~~rVviIDeAd~l~~~---------------aanaLLk~LEEpp~~~-----------~fi-- 175 (351)
T PRK09112 125 EIRRVGHFLSQT-SGDGNWRIVIIDPADDMNRN---------------AANAILKTLEEPPARA-----------LFI-- 175 (351)
T ss_pred HHHHHHHHhhhc-cccCCceEEEEEchhhcCHH---------------HHHHHHHHHhcCCCCc-----------eEE--
Confidence 233332222211 11345679999999999543 4578999998743221 011
Q ss_pred HhhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 152 VKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 152 ~~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
-.++.+..+.+.+++|+ ..+.+++|+ +++-..++........ -.+..+..+++.+.|+
T Consensus 176 ---------Lit~~~~~llptIrSRc-~~i~l~pl~----------~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~ 233 (351)
T PRK09112 176 ---------LISHSSGRLLPTIRSRC-QPISLKPLD----------DDELKKALSHLGSSQG--SDGEITEALLQRSKGS 233 (351)
T ss_pred ---------EEECChhhccHHHHhhc-cEEEecCCC----------HHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCC
Confidence 11233456678899998 588888888 5555555554221111 1245567778888775
Q ss_pred cc
Q psy3997 232 CK 233 (256)
Q Consensus 232 ~~ 233 (256)
..
T Consensus 234 pr 235 (351)
T PRK09112 234 VR 235 (351)
T ss_pred HH
Confidence 53
No 163
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.2e-08 Score=90.06 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=80.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.|..+||+||+|+|||++|+++|+.+...-.. ......++.+.+..- ++ .-+...+|++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 46789999999999999999999998642100 000113344433110 00 0122345555544
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+...- .....-|++|||+|.|... -.|.||+.|++-...+ . .
T Consensus 98 ~~~~~-~~~~~kv~iI~~a~~m~~~---------------aaNaLLK~LEEPp~~~-----------~-----------f 139 (328)
T PRK05707 98 VVQTA-QLGGRKVVLIEPAEAMNRN---------------AANALLKSLEEPSGDT-----------V-----------L 139 (328)
T ss_pred Hhhcc-ccCCCeEEEECChhhCCHH---------------HHHHHHHHHhCCCCCe-----------E-----------E
Confidence 44321 1335668899999999643 5699999998754321 1 1
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCC
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
+.+++.++.+-+.|++|+.. +.|++|+
T Consensus 140 iL~t~~~~~ll~TI~SRc~~-~~~~~~~ 166 (328)
T PRK05707 140 LLISHQPSRLLPTIKSRCQQ-QACPLPS 166 (328)
T ss_pred EEEECChhhCcHHHHhhcee-eeCCCcC
Confidence 22344557788999999887 6777777
No 164
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.87 E-value=1e-08 Score=97.78 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=34.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-ccccceEEEEecccc
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-KYKITEFIEINSHSL 61 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~-~~~~~~~~~v~~~~l 61 (256)
+.+..++|+||||||||++|+.+++........ .....+|+.++|..+
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 346779999999999999999998876321000 002357899998765
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.87 E-value=6.3e-09 Score=102.60 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=57.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-----ccch----hHHHHHHHHHHHHHHHhc
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-----FSES----GKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-----~g~~----~~~~~~~f~~a~~~~~~~ 87 (256)
..+||+||||||||++|+++|+.+.. ....++.++++++.... +|.. +..-...+..+.. .
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~------~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~----~ 668 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFD------SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR----R 668 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhc------CCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH----h
Confidence 35899999999999999999998742 23468888887764321 1110 0000011111111 2
Q ss_pred CCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 88 ESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
...+||+|||++.+.+ .+.+.|++.|+.
T Consensus 669 ~p~~vLllDEieka~~---------------~v~~~Ll~ile~ 696 (857)
T PRK10865 669 RPYSVILLDEVEKAHP---------------DVFNILLQVLDD 696 (857)
T ss_pred CCCCeEEEeehhhCCH---------------HHHHHHHHHHhh
Confidence 3458999999998754 377888888864
No 166
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.9e-08 Score=95.71 Aligned_cols=168 Identities=14% Similarity=0.182 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh----------------cccccceEEEEeccccchhhccchhHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ----------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~----------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~ 78 (256)
.+..+|||||+|+|||++|+.+|+.+..... .......++++++.+. .+...++++..
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~ 111 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIE 111 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHH
Confidence 4677999999999999999999999853100 0001123445544311 11234555555
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcC
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 158 (256)
.+... ......-|++|||+|.|... -.+.|+..|+.....+ .++ +
T Consensus 112 ~~~~~-P~~~~~KVvIIdea~~Ls~~---------------a~naLLK~LEepp~~t-----------ifI-----L--- 156 (614)
T PRK14971 112 QVRIP-PQIGKYKIYIIDEVHMLSQA---------------AFNAFLKTLEEPPSYA-----------IFI-----L--- 156 (614)
T ss_pred HHhhC-cccCCcEEEEEECcccCCHH---------------HHHHHHHHHhCCCCCe-----------EEE-----E---
Confidence 54321 11224569999999998432 4678888888754221 011 1
Q ss_pred ccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccC
Q psy3997 159 SVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSD 237 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~ 237 (256)
+++....+-+.|++|+.. +.|..++ ++.-...+...+......-.+..++.|++.+.|+.+.+-+
T Consensus 157 ---~tt~~~kIl~tI~SRc~i-v~f~~ls----------~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 157 ---ATTEKHKILPTILSRCQI-FDFNRIQ----------VADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred ---EeCCchhchHHHHhhhhe-eecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 112224566788888755 6666666 4443444444443333222346789999999998765443
No 167
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.85 E-value=1e-09 Score=96.90 Aligned_cols=84 Identities=21% Similarity=0.216 Sum_probs=51.5
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchh--hcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK--KKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~--~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.++++||++.+.+ .+.+.|++.|+.-. -...|.+.....++...+ +.|.. ...
T Consensus 130 GiL~lDEInrl~~---------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviA-----t~NP~-----e~~ 184 (334)
T PRK13407 130 GYLYIDEVNLLED---------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVG-----SGNPE-----EGE 184 (334)
T ss_pred CeEEecChHhCCH---------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEe-----cCCcc-----cCC
Confidence 5899999999854 37788888886432 111222222222333333 23322 124
Q ss_pred HHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHh
Q psy3997 169 LEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMF 208 (256)
Q Consensus 169 ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~ 208 (256)
+.+++..||...+.++.|.. .++|.+++...
T Consensus 185 l~~aLldRF~~~v~v~~~~~---------~~e~~~il~~~ 215 (334)
T PRK13407 185 LRPQLLDRFGLSVEVRSPRD---------VETRVEVIRRR 215 (334)
T ss_pred CCHHHHhhcceEEEcCCCCc---------HHHHHHHHHHh
Confidence 77889999999999999983 26666666653
No 168
>PRK06526 transposase; Provisional
Probab=98.82 E-value=5e-09 Score=89.33 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=48.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc-hhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE-SGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.+.+++|+||||||||+++.+++.++-. .+..+.+.+..++....... ......+.+. ....+.+|
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~------~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~-------~l~~~dlL 163 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ------AGHRVLFATAAQWVARLAAAHHAGRLQAELV-------KLGRYPLL 163 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH------CCCchhhhhHHHHHHHHHHHHhcCcHHHHHH-------HhccCCEE
Confidence 4678999999999999999999998743 23355556665554443111 0001111111 12367899
Q ss_pred EeCcchhhhh
Q psy3997 94 LIDEIESLTR 103 (256)
Q Consensus 94 ~iDEid~l~~ 103 (256)
+|||++.+..
T Consensus 164 IIDD~g~~~~ 173 (254)
T PRK06526 164 IVDEVGYIPF 173 (254)
T ss_pred EEcccccCCC
Confidence 9999998743
No 169
>PRK06921 hypothetical protein; Provisional
Probab=98.79 E-value=1.5e-08 Score=87.01 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=47.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
..+++|+||||||||+|+.+||+++... .+..+++++..+++..+ +..|......+.......+|+|
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~-----~g~~v~y~~~~~l~~~l--------~~~~~~~~~~~~~~~~~dlLiI 183 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK-----KGVPVLYFPFVEGFGDL--------KDDFDLLEAKLNRMKKVEVLFI 183 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh-----cCceEEEEEHHHHHHHH--------HHHHHHHHHHHHHhcCCCEEEE
Confidence 5789999999999999999999998531 03467777766554432 1222222222222346789999
Q ss_pred Ccchh
Q psy3997 96 DEIES 100 (256)
Q Consensus 96 DEid~ 100 (256)
||++.
T Consensus 184 DDl~~ 188 (266)
T PRK06921 184 DDLFK 188 (266)
T ss_pred ecccc
Confidence 99943
No 170
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.79 E-value=6e-09 Score=84.25 Aligned_cols=74 Identities=26% Similarity=0.384 Sum_probs=49.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc-hhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE-SGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.+.|++|+||||||||++|.++|+++-. .+..+.+++..+++...... ......+.++... ...+|
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~------~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~-------~~dlL 112 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR------KGYSVLFITASDLLDELKQSRSDGSYEELLKRLK-------RVDLL 112 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH-------TSSCE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc------CCcceeEeecCceeccccccccccchhhhcCccc-------cccEe
Confidence 4689999999999999999999998754 34577888888877654322 1112333344333 56789
Q ss_pred EeCcchhh
Q psy3997 94 LIDEIESL 101 (256)
Q Consensus 94 ~iDEid~l 101 (256)
+|||+...
T Consensus 113 ilDDlG~~ 120 (178)
T PF01695_consen 113 ILDDLGYE 120 (178)
T ss_dssp EEETCTSS
T ss_pred ccccccee
Confidence 99999754
No 171
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.78 E-value=9.2e-09 Score=91.15 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=45.1
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchh--hcCCCCCchhhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK--KKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~--~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
..+|++||++.+.+. +.+.|+..|+.-. -...|.+.....++...+ +.|.. ..
T Consensus 145 ~GiL~lDEInrL~~~---------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfivia-----T~np~-----eg 199 (350)
T CHL00081 145 RGILYVDEVNLLDDH---------------LVDILLDSAASGWNTVEREGISIRHPARFVLVG-----SGNPE-----EG 199 (350)
T ss_pred CCEEEecChHhCCHH---------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEe-----ccCcc-----cC
Confidence 468999999999654 5677778776421 111233222222333333 33322 12
Q ss_pred HHHHHHhhHhhhhhccCCCC
Q psy3997 168 ALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~ 187 (256)
.+.+++..||...+.+..|+
T Consensus 200 ~l~~~LldRf~l~i~l~~~~ 219 (350)
T CHL00081 200 ELRPQLLDRFGMHAEIRTVK 219 (350)
T ss_pred CCCHHHHHHhCceeecCCCC
Confidence 47788999999999999998
No 172
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.77 E-value=1.6e-08 Score=86.25 Aligned_cols=75 Identities=27% Similarity=0.371 Sum_probs=51.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhH-HH-HHHHHHHHHHHHhcCCeEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGK-LV-QKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~-~~-~~~f~~a~~~~~~~~~p~I 92 (256)
.+.+++|+||||||||+||-|||+++-. .+.++++++..+++...-..-.. .. .++.+. -....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~------~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-------l~~~dl 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK------AGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-------LKKVDL 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-------hhcCCE
Confidence 4789999999999999999999999863 35688888888876653211000 01 111111 225679
Q ss_pred EEeCcchhhh
Q psy3997 93 LLIDEIESLT 102 (256)
Q Consensus 93 i~iDEid~l~ 102 (256)
++|||+-...
T Consensus 171 LIiDDlG~~~ 180 (254)
T COG1484 171 LIIDDIGYEP 180 (254)
T ss_pred EEEecccCcc
Confidence 9999998753
No 173
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.76 E-value=1.2e-08 Score=89.35 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=49.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc-hhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE-SGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
..+|++|+||||||||+|+.++|+++.. .+..+.++...+++..+... ....+.+.++. .....+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~------~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~-------l~~~dlL 221 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK------KGVSSTLLHFPEFIRELKNSISDGSVKEKIDA-------VKEAPVL 221 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH------cCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH-------hcCCCEE
Confidence 3679999999999999999999999853 23456666666665443211 00112222322 2367799
Q ss_pred EeCcchhh
Q psy3997 94 LIDEIESL 101 (256)
Q Consensus 94 ~iDEid~l 101 (256)
+|||+..-
T Consensus 222 iIDDiG~e 229 (306)
T PRK08939 222 MLDDIGAE 229 (306)
T ss_pred EEecCCCc
Confidence 99999764
No 174
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.74 E-value=5.4e-08 Score=77.90 Aligned_cols=88 Identities=26% Similarity=0.369 Sum_probs=57.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-----hccchhH-------HHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-----YFSESGK-------LVQKMFNKIK 81 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-----~~g~~~~-------~~~~~f~~a~ 81 (256)
..+..||++|++||||+.+|++|-+.... ...+|+.++|+.+... .+|.... .-.-+|..|
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r------~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A- 92 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPR------KNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA- 92 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTT------TTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT-
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhc------ccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec-
Confidence 45788999999999999999999986543 3568999999876433 2232110 001122222
Q ss_pred HHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 82 EAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 82 ~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
....||||||+.|... +...|++.|+.
T Consensus 93 -------~~GtL~Ld~I~~L~~~---------------~Q~~Ll~~l~~ 119 (168)
T PF00158_consen 93 -------NGGTLFLDEIEDLPPE---------------LQAKLLRVLEE 119 (168)
T ss_dssp -------TTSEEEEETGGGS-HH---------------HHHHHHHHHHH
T ss_pred -------cceEEeecchhhhHHH---------------HHHHHHHHHhh
Confidence 3458999999999764 66777777764
No 175
>KOG0741|consensus
Probab=98.73 E-value=8.9e-08 Score=87.26 Aligned_cols=74 Identities=34% Similarity=0.570 Sum_probs=54.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEE-eccccchhhccchhH--HHHHHHHHHHHHHHhcCCeE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEI-NSHSLFSKYFSESGK--LVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v-~~~~l~~~~~g~~~~--~~~~~f~~a~~~~~~~~~p~ 91 (256)
+-..+||+||||+|||+||-.+|...+. +|+.+ ++.+++. +.++.+ .++++|..|.+ ..-+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~F---------PFvKiiSpe~miG--~sEsaKc~~i~k~F~DAYk-----S~ls 600 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDF---------PFVKIISPEDMIG--LSESAKCAHIKKIFEDAYK-----SPLS 600 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCC---------CeEEEeChHHccC--ccHHHHHHHHHHHHHHhhc-----Ccce
Confidence 3467999999999999999999999866 55664 4444433 123332 47889988874 3668
Q ss_pred EEEeCcchhhhhh
Q psy3997 92 CLLIDEIESLTRA 104 (256)
Q Consensus 92 Ii~iDEid~l~~~ 104 (256)
||++|++++|..-
T Consensus 601 iivvDdiErLiD~ 613 (744)
T KOG0741|consen 601 IIVVDDIERLLDY 613 (744)
T ss_pred EEEEcchhhhhcc
Confidence 9999999999643
No 176
>PRK09183 transposase/IS protein; Provisional
Probab=98.72 E-value=3.2e-08 Score=84.77 Aligned_cols=78 Identities=23% Similarity=0.231 Sum_probs=50.3
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc-hhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE-SGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
+....+++|+||||||||+++.+++..... .+..+.++++.++...+... ....+..+++... ..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~------~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~------~~~d 166 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR------AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV------MAPR 166 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh------cCCC
Confidence 344678999999999999999999987533 23466677766665433111 1112333343321 2677
Q ss_pred EEEeCcchhhh
Q psy3997 92 CLLIDEIESLT 102 (256)
Q Consensus 92 Ii~iDEid~l~ 102 (256)
+++|||++...
T Consensus 167 lLiiDdlg~~~ 177 (259)
T PRK09183 167 LLIIDEIGYLP 177 (259)
T ss_pred EEEEcccccCC
Confidence 99999998753
No 177
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.71 E-value=5.7e-07 Score=77.08 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+..++++||+|+|||++++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44689999999999999999999875
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.5e-08 Score=93.31 Aligned_cols=87 Identities=25% Similarity=0.417 Sum_probs=68.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh-hhcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~-~~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
.++-+|.|+||+|||.++..+|.+.-.. ......+..++.++...+. .+|-|+-+..++.+.+.+.+. .+.|
T Consensus 191 KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~-----~~vI 265 (786)
T COG0542 191 KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKS-----KNVI 265 (786)
T ss_pred CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcC-----CCeE
Confidence 4567999999999999999999986521 1112246678888887775 567888899999999888863 4899
Q ss_pred EEeCcchhhhhhhhc
Q psy3997 93 LLIDEIESLTRARES 107 (256)
Q Consensus 93 i~iDEid~l~~~r~~ 107 (256)
+||||++.+.+....
T Consensus 266 LFIDEiHtiVGAG~~ 280 (786)
T COG0542 266 LFIDEIHTIVGAGAT 280 (786)
T ss_pred EEEechhhhcCCCcc
Confidence 999999999877553
No 179
>KOG0990|consensus
Probab=98.69 E-value=8.7e-09 Score=88.50 Aligned_cols=164 Identities=17% Similarity=0.210 Sum_probs=96.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH--HHHhcCCeEEEEe
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE--AVEYEESLVCLLI 95 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~--~~~~~~~p~Ii~i 95 (256)
..|+|||||||||+...+.|..+-.+. .....+.+++.++-..-- ....-.+.|+.++. .+.....+..|++
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~---~~~~m~lelnaSd~rgid---~vr~qi~~fast~~~~~fst~~~fKlvIL 137 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPH---PTTSMLLELNASDDRGID---PVRQQIHLFASTQQPTTYSTHAAFKLVIL 137 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCC---CchhHHHHhhccCccCCc---chHHHHHHHHhhccceeccccCceeEEEe
Confidence 789999999999999999999984321 111224455555432211 11122234544442 1111236789999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.+... -.|+|-+.++.+..++ +++. ..|.+..+.+++.+
T Consensus 138 DEADaMT~~---------------AQnALRRviek~t~n~---------rF~i-------------i~n~~~ki~pa~qs 180 (360)
T KOG0990|consen 138 DEADAMTRD---------------AQNALRRVIEKYTANT---------RFAT-------------ISNPPQKIHPAQQS 180 (360)
T ss_pred cchhHhhHH---------------HHHHHHHHHHHhccce---------EEEE-------------eccChhhcCchhhc
Confidence 999999754 3355555555554322 2222 44777889999999
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
||..-.+-|++. .. -.......|......-.......++++.-||++.+
T Consensus 181 Rctrfrf~pl~~----------~~-~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a 229 (360)
T KOG0990|consen 181 RCTRFRFAPLTM----------AQ-QTERQSHIRESEQKETNPEGYSALGRLSVGDMRVA 229 (360)
T ss_pred ccccCCCCCCCh----------hh-hhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHH
Confidence 988766666664 21 12333334544444434455666777777776544
No 180
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.64 E-value=4.7e-08 Score=85.22 Aligned_cols=57 Identities=30% Similarity=0.554 Sum_probs=47.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
.++||+.||||||||.+|-+||++||. +.+|..++++++++.-+..++... +.|.++
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG~-------dvPF~~isgsEiYS~E~kKTE~L~-qa~Rra 121 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELGE-------DVPFVAISGSEIYSLEVKKTEALT-QALRRA 121 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhCC-------CCCceeeccceeeeecccHHHHHH-HHHHHh
Confidence 689999999999999999999999985 679999999999988777776544 334433
No 181
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=9.4e-08 Score=85.65 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.|..+||+||+|+||+++|.++|+.+-
T Consensus 40 l~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999984
No 182
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=1e-07 Score=72.46 Aligned_cols=85 Identities=28% Similarity=0.475 Sum_probs=47.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc--hhh-------ccc---hhHHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF--SKY-------FSE---SGKLVQKMFNKIKEA 83 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~--~~~-------~g~---~~~~~~~~f~~a~~~ 83 (256)
.+.++++||||+|||++++.+++.+........ ..+++.+++.... ..+ ++. .......+++...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 567899999999999999999999853210000 3466777764432 111 010 111233334444433
Q ss_pred HHhcCCeEEEEeCcchhhh
Q psy3997 84 VEYEESLVCLLIDEIESLT 102 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~ 102 (256)
+... ...+|+|||+|.+.
T Consensus 83 l~~~-~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDRR-RVVLLVIDEADHLF 100 (131)
T ss_dssp HHHC-TEEEEEEETTHHHH
T ss_pred HHhc-CCeEEEEeChHhcC
Confidence 3323 33699999999985
No 183
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.63 E-value=5.5e-08 Score=85.70 Aligned_cols=48 Identities=35% Similarity=0.659 Sum_probs=38.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG 70 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~ 70 (256)
.+++||.||||||||.+|-++|++||. ..+|..++++++++.-+..++
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~-------~~PF~~isgSEiyS~e~kKTE 97 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGE-------DVPFVSISGSEIYSSEVKKTE 97 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTT-------TS-EEEEEGGGG-BTTC-HHH
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCC-------CCCeeEcccceeeecccCchH
Confidence 689999999999999999999999985 679999999999887766665
No 184
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.63 E-value=3.6e-08 Score=93.61 Aligned_cols=152 Identities=21% Similarity=0.192 Sum_probs=85.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH-----HHHHhcCCe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK-----EAVEYEESL 90 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-----~~~~~~~~p 90 (256)
-.+|||.|+||||||++|+++++.+.. ..+|+.+.........+|.- .+...+..-. ..+. ....
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-------~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~-~A~~ 85 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-------IMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLD-EAPR 85 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-------CCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCee-eCCC
Confidence 357999999999999999999998753 22577777544444444432 1111111000 0000 1133
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchh--hcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK--KKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~--~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.+||+|||+.+.+. +.+.|++.|+.-. -...|.+......+.+++ +.|... ....
T Consensus 86 GvL~lDEi~rl~~~---------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-----t~np~e---~~g~ 142 (589)
T TIGR02031 86 GVLYVDMANLLDDG---------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIA-----TYDPAE---GGGG 142 (589)
T ss_pred CcEeccchhhCCHH---------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEE-----ecCCcc---ccCC
Confidence 58999999999654 6788888886422 111122211112222222 333221 1125
Q ss_pred HHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 169 LEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 169 ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
+.+++..||..++.+..+.. .++|.+|++.+.
T Consensus 143 L~~~LldRf~l~v~~~~~~~---------~~er~eil~~~~ 174 (589)
T TIGR02031 143 LPDHLLDRLALHVSLEDVAS---------QDLRVEIVRRER 174 (589)
T ss_pred CCHHHHHhccCeeecCCCCC---------HHHHHHHHHHHH
Confidence 77889999998777765542 455566655543
No 185
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.62 E-value=1.7e-07 Score=78.04 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=57.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-h--h-------hccchhHHHHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-S--K-------YFSESGKLVQKMFNKIKEAVE 85 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-~--~-------~~g~~~~~~~~~f~~a~~~~~ 85 (256)
|..+|+||+||+|||++|+.++... -++..+.+.-. . . -....-..+.+.+..+..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~~-----------~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~--- 77 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGKT-----------LVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNI--- 77 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCCC-----------EEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHh---
Confidence 6779999999999999999997432 22332221100 0 0 001111223333332222
Q ss_pred hcCCeEEEEeCcchhhhh------hhhcccCCCCCCcHHHHHHHHHHHHHchhh
Q psy3997 86 YEESLVCLLIDEIESLTR------ARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~------~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
..+.+..|+||+|+.+.. .+.......+......+.+.++..|..+..
T Consensus 78 ~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~ 131 (220)
T TIGR01618 78 QAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE 131 (220)
T ss_pred ccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 234677999999999854 222221112334455677777777777654
No 186
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.61 E-value=4.4e-08 Score=86.74 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
..++++.|+||||||++++++++.+
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999999987
No 187
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=3.2e-07 Score=80.70 Aligned_cols=129 Identities=20% Similarity=0.239 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
.|..+||+||+|+|||++|+++|+.+-.... ......++.+.+.+ ++. -+...++++.+.+... ......-|++
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~-~~~h~D~~~~~~~~--~~~--i~v~~ir~~~~~~~~~-p~~~~~kv~i 98 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILGKSQ-QREYVDIIEFKPIN--KKS--IGVDDIRNIIEEVNKK-PYEGDKKVII 98 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcCCCC-CCCCCCeEEecccc--CCC--CCHHHHHHHHHHHhcC-cccCCceEEE
Confidence 4678899999999999999999998743110 00111233443311 010 1122355554433321 1133556999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||+|.+... -.|.||+.|++....+. .+. .++.++.+-+.++
T Consensus 99 I~~ad~m~~~---------------a~naLLK~LEepp~~t~----------~il------------~~~~~~~ll~TI~ 141 (313)
T PRK05564 99 IYNSEKMTEQ---------------AQNAFLKTIEEPPKGVF----------IIL------------LCENLEQILDTIK 141 (313)
T ss_pred EechhhcCHH---------------HHHHHHHHhcCCCCCeE----------EEE------------EeCChHhCcHHHH
Confidence 9999998432 45889999887543221 111 1122356777888
Q ss_pred hHhhhhhccCCCC
Q psy3997 175 DLLVEEKSLPLKR 187 (256)
Q Consensus 175 rRf~~~i~~~~p~ 187 (256)
+|+. .+.++.|+
T Consensus 142 SRc~-~~~~~~~~ 153 (313)
T PRK05564 142 SRCQ-IYKLNRLS 153 (313)
T ss_pred hhce-eeeCCCcC
Confidence 8885 67777777
No 188
>PF13173 AAA_14: AAA domain
Probab=98.57 E-value=1.2e-07 Score=72.35 Aligned_cols=72 Identities=28% Similarity=0.443 Sum_probs=46.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
.+.++++||.|+|||++++.+++.+. ...++++++..+....... ...+.+.+ .+.. ...+.+|||
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-------~~~~~~yi~~~~~~~~~~~--~~~~~~~~---~~~~--~~~~~~i~i 67 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-------PPENILYINFDDPRDRRLA--DPDLLEYF---LELI--KPGKKYIFI 67 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-------ccccceeeccCCHHHHHHh--hhhhHHHH---HHhh--ccCCcEEEE
Confidence 35689999999999999999999874 1236788887765332110 00011222 2110 125689999
Q ss_pred Ccchhh
Q psy3997 96 DEIESL 101 (256)
Q Consensus 96 DEid~l 101 (256)
||+..+
T Consensus 68 DEiq~~ 73 (128)
T PF13173_consen 68 DEIQYL 73 (128)
T ss_pred ehhhhh
Confidence 999987
No 189
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=5.5e-07 Score=79.83 Aligned_cols=131 Identities=15% Similarity=0.110 Sum_probs=80.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh---------------cccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ---------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~---------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.|-++||+||+|+||+++|.++|+.+-..-. ..+....++.+.+..- +. .-+...+|++-+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHHH
Confidence 3678999999999999999999999853210 0011112333332110 00 0122235554444
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... ......-|++||++|.|... -.|.||+.||+-...+ + .
T Consensus 100 ~~~~-~~~g~~kV~iI~~ae~m~~~---------------AaNaLLKtLEEPp~~t----------------~------f 141 (334)
T PRK07993 100 LYEH-ARLGGAKVVWLPDAALLTDA---------------AANALLKTLEEPPENT----------------W------F 141 (334)
T ss_pred Hhhc-cccCCceEEEEcchHhhCHH---------------HHHHHHHHhcCCCCCe----------------E------E
Confidence 3322 12345679999999999643 5699999999754322 1 1
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCC
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
+-.++.++.|-+.|++|... +.+++|+
T Consensus 142 iL~t~~~~~lLpTIrSRCq~-~~~~~~~ 168 (334)
T PRK07993 142 FLACREPARLLATLRSRCRL-HYLAPPP 168 (334)
T ss_pred EEEECChhhChHHHHhcccc-ccCCCCC
Confidence 22344557788899999984 6787777
No 190
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.55 E-value=5e-08 Score=90.06 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=94.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhh---------------cccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ---------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~---------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
..+.||.||-|||||++||.+|+.++.... ..+....++++++.. ..+-..+|++.+.+
T Consensus 38 ~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaAS------n~gVddiR~i~e~v 111 (515)
T COG2812 38 AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAAS------NTGVDDIREIIEKV 111 (515)
T ss_pred hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhh------ccChHHHHHHHHHh
Confidence 457899999999999999999999986421 000111222222211 11233455555555
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... ....++.|.+|||++.|.. ..+|.||+.+++-.. .+.|+- +++
T Consensus 112 ~y~-P~~~ryKVyiIDEvHMLS~---------------~afNALLKTLEEPP~-----------hV~FIl----ATT--- 157 (515)
T COG2812 112 NYA-PSEGRYKVYIIDEVHMLSK---------------QAFNALLKTLEEPPS-----------HVKFIL----ATT--- 157 (515)
T ss_pred ccC-CccccceEEEEecHHhhhH---------------HHHHHHhcccccCcc-----------CeEEEE----ecC---
Confidence 421 1244667999999999854 378999999986432 122211 122
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
-+..+...+.+|+..--+=.++. ++. ...+..++......-.+..+..+++...|
T Consensus 158 ----e~~Kip~TIlSRcq~f~fkri~~----------~~I-~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 158 ----EPQKIPNTILSRCQRFDFKRLDL----------EEI-AKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred ----CcCcCchhhhhccccccccCCCH----------HHH-HHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 12445566677655433334444 443 44444466555444356888888888888
No 191
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=3.7e-07 Score=80.93 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=80.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc----------------ccccceEEEEeccccch--------------
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS----------------KYKITEFIEINSHSLFS-------------- 63 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~----------------~~~~~~~~~v~~~~l~~-------------- 63 (256)
..|.++||+||+|+||+++|+.+|+.+...-.. ......+..+.+.....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 457899999999999999999999998653200 00011233333221000
Q ss_pred hhcc---------chhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhc
Q psy3997 64 KYFS---------ESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK 134 (256)
Q Consensus 64 ~~~g---------~~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~ 134 (256)
.--| -+-..++++.+.+... ......-|++||++|.|... -.|.||+.||+-...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~-~~~~~~kV~iI~~ae~m~~~---------------AaNaLLKtLEEPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVG-THRGGARVVVLYPAEALNVA---------------AANALLKTLEEPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccC-CccCCceEEEEechhhcCHH---------------HHHHHHHHhcCCCcC
Confidence 0000 0112344444333211 11334569999999999543 569999999975432
Q ss_pred CCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCC
Q psy3997 135 STGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 135 ~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
+ . .+-.++.++.|.+.|++|+. .+.+++|+
T Consensus 163 t-----------~-----------fiL~t~~~~~LLpTI~SRcq-~i~~~~~~ 192 (342)
T PRK06964 163 T-----------V-----------FLLVSARIDRLLPTILSRCR-QFPMTVPA 192 (342)
T ss_pred c-----------E-----------EEEEECChhhCcHHHHhcCE-EEEecCCC
Confidence 2 1 12234556788899999994 67788887
No 192
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.54 E-value=8.9e-07 Score=78.43 Aligned_cols=88 Identities=20% Similarity=0.270 Sum_probs=58.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH-----------H
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE-----------A 83 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----------~ 83 (256)
....||+.|++||||+++|++|-..... ...+|+.++|..+..... -..+|...+. .
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r------~~~pfv~vnc~~~~~~~l------~~~lfG~~~g~~~ga~~~~~G~ 88 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKR------WQGPLVKLNCAALSENLL------DSELFGHEAGAFTGAQKRHQGR 88 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCc------cCCCeEEEeCCCCChHHH------HHHHhccccccccCcccccCCc
Confidence 3677999999999999999999887543 356899999986643211 1123321110 0
Q ss_pred HHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 84 VEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
+. ......||||||+.|... +...|+..|+.
T Consensus 89 ~~-~a~gGtL~Ldei~~L~~~---------------~Q~~Ll~~l~~ 119 (329)
T TIGR02974 89 FE-RADGGTLFLDELATASLL---------------VQEKLLRVIEY 119 (329)
T ss_pred hh-hCCCCEEEeCChHhCCHH---------------HHHHHHHHHHc
Confidence 11 224568999999999654 55666666654
No 193
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.52 E-value=5.7e-08 Score=93.09 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=79.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh-------hhhhcc-------------------cccceEEEEeccccchhhccchh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS-------IRLQSK-------------------YKITEFIEINSHSLFSKYFSESG 70 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~-------~~~~~~-------------------~~~~~~~~v~~~~l~~~~~g~~~ 70 (256)
.+|||+|+||||||++|+++++.+. .++.|. ....+|+.+.++......+|.-.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 5799999999999999999999872 111100 01245666665544444444321
Q ss_pred HHHHHHHHHH-----HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchh--hcCCCCCchhh
Q psy3997 71 KLVQKMFNKI-----KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK--KKSTGLSGRTL 143 (256)
Q Consensus 71 ~~~~~~f~~a-----~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~--~~~~g~~g~~~ 143 (256)
+...+..- ...+. .....|+|||||+.+... +.+.|+..|+.-. -...|.+....
T Consensus 106 --~~~~l~~g~~~~~~G~L~-~A~~GiL~lDEi~~l~~~---------------~q~~Ll~~le~g~~~v~r~g~~~~~~ 167 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLA-EAHRGILYIDEVNLLDDH---------------LVDVLLDAAAMGVNRVEREGLSVSHP 167 (633)
T ss_pred --HHHHhhcCCeeecCccee-ecCCCeEEeChhhhCCHH---------------HHHHHHHHHhcCCEEEEECCceeeec
Confidence 11111100 00000 113359999999999653 6788888886321 11222222222
Q ss_pred hcccchhhHhhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCC
Q psy3997 144 RKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRN 188 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~ 188 (256)
.++.+++ +.|.. ...+.+++..||...+.++.|..
T Consensus 168 ~~~~lIa-----t~np~-----eg~l~~~L~dR~~l~i~v~~~~~ 202 (633)
T TIGR02442 168 ARFVLIG-----TMNPE-----EGDLRPQLLDRFGLCVDVAAPRD 202 (633)
T ss_pred CCeEEEE-----ecCCC-----CCCCCHHHHhhcceEEEccCCCc
Confidence 2233333 22211 12366788999998888887763
No 194
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.48 E-value=1.2e-06 Score=68.61 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=46.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhc-------------------cch-hHHHHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF-------------------SES-GKLVQKMFN 78 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~-------------------g~~-~~~~~~~f~ 78 (256)
++++||||+|||+++..++..... ...+.++++......... ... .........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLS 75 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHH
Confidence 689999999999999999998853 123455555543322110 000 000111111
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRAR 105 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r 105 (256)
.+. .......|.+++|||+..+....
T Consensus 76 ~~~-~~~~~~~~~~lviDe~~~~~~~~ 101 (165)
T cd01120 76 KAE-RLRERGGDDLIILDELTRLVRAL 101 (165)
T ss_pred HHH-HHHhCCCCEEEEEEcHHHHHHHH
Confidence 111 11225588899999999987653
No 195
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.47 E-value=2.2e-07 Score=74.02 Aligned_cols=100 Identities=23% Similarity=0.344 Sum_probs=60.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc--------------cccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK--------------YKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~--------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
.|..+||+||+|+||+++|+++|+.+-.+-... .....++.++....... -....++++.+.+
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~---i~i~~ir~i~~~~ 94 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS---IKIDQIREIIEFL 94 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS---BSHHHHHHHHHHC
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch---hhHHHHHHHHHHH
Confidence 477899999999999999999999975432110 12234555544322111 1123344444433
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhh
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
... ......-|++|||+|.|... ..|.||+.||+...
T Consensus 95 ~~~-~~~~~~KviiI~~ad~l~~~---------------a~NaLLK~LEepp~ 131 (162)
T PF13177_consen 95 SLS-PSEGKYKVIIIDEADKLTEE---------------AQNALLKTLEEPPE 131 (162)
T ss_dssp TSS--TTSSSEEEEEETGGGS-HH---------------HHHHHHHHHHSTTT
T ss_pred HHH-HhcCCceEEEeehHhhhhHH---------------HHHHHHHHhcCCCC
Confidence 211 11345679999999998643 67999999998753
No 196
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.5e-06 Score=76.47 Aligned_cols=165 Identities=12% Similarity=0.130 Sum_probs=89.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------ccccceEEEEeccccchh------h---cc---c-----
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------KYKITEFIEINSHSLFSK------Y---FS---E----- 68 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------~~~~~~~~~v~~~~l~~~------~---~g---~----- 68 (256)
.|..+||+||+|+||+++|.++|+.+-..-.+ ......++.+.+...... + .| .
T Consensus 25 l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I 104 (314)
T PRK07399 25 IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQI 104 (314)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccC
Confidence 36789999999999999999999998532110 001112233333211000 0 00 0
Q ss_pred hhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccc
Q psy3997 69 SGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPF 148 (256)
Q Consensus 69 ~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~ 148 (256)
....++++.+.+... .......|++||++|.|... -.|.||+.|++.. .+ .+..
T Consensus 105 ~id~ir~i~~~l~~~-p~~~~~kVvII~~ae~m~~~---------------aaNaLLK~LEEPp-~~---------~fIL 158 (314)
T PRK07399 105 RLEQIREIKRFLSRP-PLEAPRKVVVIEDAETMNEA---------------AANALLKTLEEPG-NG---------TLIL 158 (314)
T ss_pred cHHHHHHHHHHHccC-cccCCceEEEEEchhhcCHH---------------HHHHHHHHHhCCC-CC---------eEEE
Confidence 011244443333211 11345679999999998543 5589999998754 21 0111
Q ss_pred hhhHhhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhC
Q psy3997 149 LTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSH 228 (256)
Q Consensus 149 ~~~~~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t 228 (256)
.++.++.|-+.|++|+. .+.++.++ ++.-.+++....... ..+.....++.+.
T Consensus 159 -------------i~~~~~~Ll~TI~SRcq-~i~f~~l~----------~~~~~~~L~~~~~~~---~~~~~~~~l~~~a 211 (314)
T PRK07399 159 -------------IAPSPESLLPTIVSRCQ-IIPFYRLS----------DEQLEQVLKRLGDEE---ILNINFPELLALA 211 (314)
T ss_pred -------------EECChHhCcHHHHhhce-EEecCCCC----------HHHHHHHHHHhhccc---cchhHHHHHHHHc
Confidence 22334677788899974 55676666 444444444332111 0112246677777
Q ss_pred CCCc
Q psy3997 229 PGRC 232 (256)
Q Consensus 229 ~g~~ 232 (256)
.|+.
T Consensus 212 ~Gs~ 215 (314)
T PRK07399 212 QGSP 215 (314)
T ss_pred CCCH
Confidence 7754
No 197
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.9e-06 Score=75.79 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=75.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh------------cccccceEEEE--eccccchhh-ccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ------------SKYKITEFIEI--NSHSLFSKY-FSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~------------~~~~~~~~~~v--~~~~l~~~~-~g~~~~~~~~~f~~ 79 (256)
.|.++||+||+|+||+++|.++|+.+-..-. .......++.+ .+..--.+. ..-.-..++++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 3678999999999999999999998854210 00001113333 221100000 00011223444333
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... ......-|++||++|.|... -.|.||+.||+-...+. .
T Consensus 105 ~~~~-p~~g~~kV~iI~~ae~m~~~---------------AaNaLLKtLEEPp~~~~----------------------f 146 (319)
T PRK08769 105 LALT-PQYGIAQVVIVDPADAINRA---------------ACNALLKTLEEPSPGRY----------------------L 146 (319)
T ss_pred HhhC-cccCCcEEEEeccHhhhCHH---------------HHHHHHHHhhCCCCCCe----------------------E
Confidence 3211 11234569999999999543 56999999998653221 1
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCC
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
+-.++.++.|-+.|++|+... .++.|+
T Consensus 147 iL~~~~~~~lLpTIrSRCq~i-~~~~~~ 173 (319)
T PRK08769 147 WLISAQPARLPATIRSRCQRL-EFKLPP 173 (319)
T ss_pred EEEECChhhCchHHHhhheEe-eCCCcC
Confidence 113344466778899998765 455566
No 198
>PHA00729 NTP-binding motif containing protein
Probab=98.45 E-value=8e-07 Score=74.00 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+++++|+||||||++|.++|++++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999863
No 199
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.43 E-value=2.8e-06 Score=70.20 Aligned_cols=87 Identities=20% Similarity=0.351 Sum_probs=54.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc-------------------hhH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE-------------------SGK 71 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~-------------------~~~ 71 (256)
++++....++++||||+|||+++..+|..... .+...++++...+....+-+ ...
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~------~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~ 80 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAAR------QGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFD 80 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHH
Confidence 67888899999999999999999999987643 23467787776411110000 000
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 72 LVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 72 ~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
.....+..+...+. ...+.+|+||-+..+...
T Consensus 81 ~~~~~~~~l~~~~~-~~~~~lvVIDSis~l~~~ 112 (209)
T TIGR02237 81 EQGVAIQKTSKFID-RDSASLVVVDSFTALYRL 112 (209)
T ss_pred HHHHHHHHHHHHHh-hcCccEEEEeCcHHHhHH
Confidence 11112333333332 236889999999998753
No 200
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.43 E-value=4.8e-08 Score=80.02 Aligned_cols=26 Identities=46% Similarity=0.764 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..++|++||||||||++|+.+..-+-
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 46899999999999999999998763
No 201
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=7.9e-07 Score=78.78 Aligned_cols=98 Identities=13% Similarity=0.197 Sum_probs=56.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.|..+||+||+|+|||++|+.+|+.+-.+-.. ......+.++.... .. -+-..++++.+.
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~---~~--i~id~ir~l~~~ 101 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG---QS--IKKDQIRYLKEE 101 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc---cc--CCHHHHHHHHHH
Confidence 46788999999999999999999997432100 00001233332210 00 011234444433
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhh
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
+... ......-|++|||+|.+... -.|.||+.|++...
T Consensus 102 ~~~~-~~~~~~kvviI~~a~~~~~~---------------a~NaLLK~LEEPp~ 139 (329)
T PRK08058 102 FSKS-GVESNKKVYIIEHADKMTAS---------------AANSLLKFLEEPSG 139 (329)
T ss_pred HhhC-CcccCceEEEeehHhhhCHH---------------HHHHHHHHhcCCCC
Confidence 3211 01234569999999998542 56889999987543
No 202
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.40 E-value=1.6e-05 Score=68.76 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch--hh-----------ccchhHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS--KY-----------FSESGKLVQKMFNKIK 81 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~--~~-----------~g~~~~~~~~~f~~a~ 81 (256)
...++|++|++|.|||++++.+++.-...........+++.+.+..-.+ .+ +..+ ....+....+.
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-~~~~~~~~~~~ 138 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-DRVAKLEQQVL 138 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC-CCHHHHHHHHH
Confidence 3578999999999999999999986542221111234667766532111 11 1111 11223333333
Q ss_pred HHHHhcCCeEEEEeCcchhhhhh
Q psy3997 82 EAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 82 ~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
..+. .-++-+|+|||++.+...
T Consensus 139 ~llr-~~~vrmLIIDE~H~lLaG 160 (302)
T PF05621_consen 139 RLLR-RLGVRMLIIDEFHNLLAG 160 (302)
T ss_pred HHHH-HcCCcEEEeechHHHhcc
Confidence 3322 236779999999998654
No 203
>KOG1051|consensus
Probab=98.40 E-value=1.4e-06 Score=84.91 Aligned_cols=90 Identities=26% Similarity=0.390 Sum_probs=66.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc------c---hhhccchhHHHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL------F---SKYFSESGKLVQKMFNKIKEAV 84 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l------~---~~~~g~~~~~~~~~f~~a~~~~ 84 (256)
.+.--++|.||.|+|||.+|+++|..+= .....|+.++.+++ . ..|+|.++ .-.+.+.++
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~F------gse~~~IriDmse~~evskligsp~gyvG~e~--gg~Lteavr--- 657 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVF------GSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVK--- 657 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHc------CCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHh---
Confidence 4566799999999999999999999872 25668999999852 2 22455544 334555555
Q ss_pred HhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch
Q psy3997 85 EYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~ 131 (256)
....+||+|||||...+ .+++.|++.+|.-
T Consensus 658 --rrP~sVVLfdeIEkAh~---------------~v~n~llq~lD~G 687 (898)
T KOG1051|consen 658 --RRPYSVVLFEEIEKAHP---------------DVLNILLQLLDRG 687 (898)
T ss_pred --cCCceEEEEechhhcCH---------------HHHHHHHHHHhcC
Confidence 34778999999998643 3889999999754
No 204
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=2.9e-06 Score=74.60 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=78.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh--------------cccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ--------------SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~--------------~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
.|.++||+||.|+||+++|+++|+.+-..-. ..+....|+.+.+..- ++.+ +...+|++-+.+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCcC--CHHHHHHHHHHH
Confidence 3678999999999999999999998853210 0011123444443210 0001 122344443333
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... ...+..-|++||++|.|... -.|.||+.||+-...+. .+
T Consensus 101 ~~~-~~~~~~kV~iI~~ae~m~~~---------------AaNaLLKtLEEPp~~t~----------------------fi 142 (319)
T PRK06090 101 QES-SQLNGYRLFVIEPADAMNES---------------ASNALLKTLEEPAPNCL----------------------FL 142 (319)
T ss_pred hhC-cccCCceEEEecchhhhCHH---------------HHHHHHHHhcCCCCCeE----------------------EE
Confidence 221 11334579999999999543 56999999998653221 11
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCC
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
-.++.++.+-+.|++|.. .+.++.|+
T Consensus 143 L~t~~~~~lLpTI~SRCq-~~~~~~~~ 168 (319)
T PRK06090 143 LVTHNQKRLLPTIVSRCQ-QWVVTPPS 168 (319)
T ss_pred EEECChhhChHHHHhcce-eEeCCCCC
Confidence 133445667778999987 45677777
No 205
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.38 E-value=7.1e-07 Score=74.18 Aligned_cols=26 Identities=46% Similarity=0.721 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...++++||.|+|||++++.+.+.+.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 57899999999999999999999884
No 206
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.38 E-value=1.6e-06 Score=72.83 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=51.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
...+-.++||+|||||++++.+|+.+|. .++..+|++.++ ...+.++|.=+.. ..+-++
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~---------~~~vfnc~~~~~------~~~l~ril~G~~~------~GaW~c 89 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGR---------FVVVFNCSEQMD------YQSLSRILKGLAQ------SGAWLC 89 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT-----------EEEEETTSSS-------HHHHHHHHHHHHH------HT-EEE
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCC---------eEEEeccccccc------HHHHHHHHHHHhh------cCchhh
Confidence 3567789999999999999999999987 668899987543 3457777765554 457899
Q ss_pred eCcchhhhh
Q psy3997 95 IDEIESLTR 103 (256)
Q Consensus 95 iDEid~l~~ 103 (256)
+||++++-.
T Consensus 90 fdefnrl~~ 98 (231)
T PF12774_consen 90 FDEFNRLSE 98 (231)
T ss_dssp EETCCCSSH
T ss_pred hhhhhhhhH
Confidence 999999843
No 207
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.36 E-value=7.5e-08 Score=90.09 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.++||+|+||||||++|+.+++...
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~ 261 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAP 261 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcC
Confidence 4699999999999999999999864
No 208
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.35 E-value=6.4e-07 Score=66.23 Aligned_cols=25 Identities=40% Similarity=0.772 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
|.||||||+|||++++.+|..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999998754
No 209
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.34 E-value=1e-06 Score=79.04 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=60.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHH---------
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVE--------- 85 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~--------- 85 (256)
-...+|++|++||||+.+|+.|...... .+..+|+.+||..+..+... .++|...+..+-
T Consensus 100 ~~~~vLi~GetGtGKel~A~~iH~~s~r-----~~~~PFI~~NCa~~~en~~~------~eLFG~~kGaftGa~~~k~Gl 168 (403)
T COG1221 100 SGLPVLIIGETGTGKELFARLIHALSAR-----RAEAPFIAFNCAAYSENLQE------AELFGHEKGAFTGAQGGKAGL 168 (403)
T ss_pred CCCcEEEecCCCccHHHHHHHHHHhhhc-----ccCCCEEEEEHHHhCcCHHH------HHHhccccceeecccCCcCch
Confidence 3567999999999999999999954432 14679999999876543211 113322211110
Q ss_pred -hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchh
Q psy3997 86 -YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132 (256)
Q Consensus 86 -~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~ 132 (256)
+......+|+|||..|.+. ....+++.||+-.
T Consensus 169 fe~A~GGtLfLDEI~~LP~~---------------~Q~kLl~~le~g~ 201 (403)
T COG1221 169 FEQANGGTLFLDEIHRLPPE---------------GQEKLLRVLEEGE 201 (403)
T ss_pred heecCCCEEehhhhhhCCHh---------------HHHHHHHHHHcCc
Confidence 0123458999999999765 4466777777643
No 210
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=2.3e-06 Score=75.38 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=77.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc---------------ccccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS---------------KYKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~---------------~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.|-++||+||+|+||+++|+++|+.+-.+-.. .+....++.+.+.+ ++. -+...+|++-+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHH
Confidence 36789999999999999999999998542100 00111233333211 011 123345555444
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... ...+..-|++||++|.|... -.|.||+.||+-...+- .
T Consensus 99 ~~~~-~~~g~~KV~iI~~a~~m~~~---------------AaNaLLKtLEEPp~~~~----------------------f 140 (325)
T PRK06871 99 VSQH-AQQGGNKVVYIQGAERLTEA---------------AANALLKTLEEPRPNTY----------------------F 140 (325)
T ss_pred Hhhc-cccCCceEEEEechhhhCHH---------------HHHHHHHHhcCCCCCeE----------------------E
Confidence 4321 11335569999999999543 56999999997543221 1
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCC
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
+-.++.++.+-+.|++|..... +++|+
T Consensus 141 iL~t~~~~~llpTI~SRC~~~~-~~~~~ 167 (325)
T PRK06871 141 LLQADLSAALLPTIYSRCQTWL-IHPPE 167 (325)
T ss_pred EEEECChHhCchHHHhhceEEe-CCCCC
Confidence 1133445677788899887654 55555
No 211
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.33 E-value=5.2e-07 Score=83.91 Aligned_cols=25 Identities=44% Similarity=0.744 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...++|.||||||||++++.++..+
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhccc
Confidence 4679999999999999999999754
No 212
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=7.3e-06 Score=72.44 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=77.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhh----------------cccccceEEEEeccccchhhcc-----chhHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ----------------SKYKITEFIEINSHSLFSKYFS-----ESGKL 72 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~----------------~~~~~~~~~~v~~~~l~~~~~g-----~~~~~ 72 (256)
..|.++||+||+|+|||++|+.+|+.+..+-. .......|+++++..-.. --| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~-~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP-ENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc-cccccCCCcCHHH
Confidence 45778999999999999999999999853110 001113466665531000 001 12334
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhH
Q psy3997 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFV 152 (256)
Q Consensus 73 ~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~ 152 (256)
+|++.+.+... ......-|++||+++.+-.. ..+.+++.|++..... .
T Consensus 98 iR~l~~~~~~~-p~~~~~kV~iiEp~~~Ld~~---------------a~naLLk~LEep~~~~-~--------------- 145 (325)
T PRK08699 98 VREIIDNVYLT-SVRGGLRVILIHPAESMNLQ---------------AANSLLKVLEEPPPQV-V--------------- 145 (325)
T ss_pred HHHHHHHHhhC-cccCCceEEEEechhhCCHH---------------HHHHHHHHHHhCcCCC-E---------------
Confidence 56655554431 11235568999999998543 5578888888763211 0
Q ss_pred hhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCC
Q psy3997 153 KYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 153 ~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
.+-+++.++.+-+.+.+|+... .+++|+
T Consensus 146 ------~Ilvth~~~~ll~ti~SRc~~~-~~~~~~ 173 (325)
T PRK08699 146 ------FLLVSHAADKVLPTIKSRCRKM-VLPAPS 173 (325)
T ss_pred ------EEEEeCChHhChHHHHHHhhhh-cCCCCC
Confidence 0112333456677788887543 455555
No 213
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.31 E-value=1.2e-06 Score=77.66 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=50.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH-----------HH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK-----------EA 83 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-----------~~ 83 (256)
.+..||+.|++||||+++|+++-..... ...+|+.++|..+....+ -..+|.... ..
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r------~~~pfv~v~c~~~~~~~~------~~~lfg~~~~~~~g~~~~~~g~ 95 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSR------WQGPFISLNCAALNENLL------DSELFGHEAGAFTGAQKRHPGR 95 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCc------cCCCeEEEeCCCCCHHHH------HHHHccccccccCCcccccCCc
Confidence 3677999999999999999999876532 346899999987632110 111222110 01
Q ss_pred HHhcCCeEEEEeCcchhhhhh
Q psy3997 84 VEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+. ......|||||++.|...
T Consensus 96 l~-~a~gGtL~l~~i~~L~~~ 115 (326)
T PRK11608 96 FE-RADGGTLFLDELATAPML 115 (326)
T ss_pred hh-ccCCCeEEeCChhhCCHH
Confidence 11 224567999999999654
No 214
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.29 E-value=1.2e-05 Score=67.32 Aligned_cols=86 Identities=23% Similarity=0.336 Sum_probs=53.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccc---------------hhH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSE---------------SGK 71 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~---------------~~~ 71 (256)
++++....++++||||+|||+++..+|.+.-. .+...+++++..+.... ... +..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~------~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFE 91 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHH
Confidence 57777888999999999999999999987643 23466777776221110 000 000
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 72 LVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 72 ~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
......+.+..++. ..+.+|+||-+..++..
T Consensus 92 ~~~~~i~~~~~~~~--~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 92 EQSEAIRKAEKLAK--ENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHHHHHHHHHHH--hcccEEEEeCcHHHhHH
Confidence 11112222222221 47889999999998754
No 215
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.29 E-value=2.8e-06 Score=79.83 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=49.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH-----------HHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK-----------EAV 84 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-----------~~~ 84 (256)
...||++|++||||+++|+++-..... ...+|+.++|..+..... -..+|..+. ..+
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r------~~~pfv~inca~~~~~~~------e~elFG~~~~~~~~~~~~~~g~~ 294 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPR------GKKPFLALNCASIPDDVV------ESELFGHAPGAYPNALEGKKGFF 294 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCC------CCCCeEEeccccCCHHHH------HHHhcCCCCCCcCCcccCCCChh
Confidence 556999999999999999998665432 346899999987643211 112222110 011
Q ss_pred HhcCCeEEEEeCcchhhhhh
Q psy3997 85 EYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~ 104 (256)
+ ......||||||+.+...
T Consensus 295 e-~a~~GtL~LdeI~~L~~~ 313 (520)
T PRK10820 295 E-QANGGSVLLDEIGEMSPR 313 (520)
T ss_pred h-hcCCCEEEEeChhhCCHH
Confidence 1 123467899999999654
No 216
>KOG1514|consensus
Probab=98.27 E-value=1.8e-06 Score=81.18 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=99.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhh-hcccccceEEEEeccccchh----------hccchhHHHHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL-QSKYKITEFIEINSHSLFSK----------YFSESGKLVQKMFNKIKEAVE 85 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~-~~~~~~~~~~~v~~~~l~~~----------~~g~~~~~~~~~f~~a~~~~~ 85 (256)
..+.+.|-||||||.+++.+.++|...- .+..+...|+++|+..+.+. +.|+...-- .........+.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~-~al~~L~~~f~ 501 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWD-AALEALNFRFT 501 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHH-HHHHHHHHhhc
Confidence 4688899999999999999999887211 12234567899998665432 122211110 01111111111
Q ss_pred ---hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 86 ---YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 86 ---~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
.+..++||+|||.|.|...++. |+--+..+-..-. .++.+++.. + +
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~Qd------------VlYn~fdWpt~~~-----------sKLvvi~Ia---N-----T 550 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQD------------VLYNIFDWPTLKN-----------SKLVVIAIA---N-----T 550 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccHH------------HHHHHhcCCcCCC-----------CceEEEEec---c-----c
Confidence 2557899999999999875442 4444433322111 222233300 1 1
Q ss_pred HHHHHHH-HHHHhhHhh-hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCc
Q psy3997 163 ENFLIAL-EKTVLDLLV-EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDST 240 (256)
Q Consensus 163 t~~~~~l-d~ai~rRf~-~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~ 240 (256)
-|+|+.+ ..-+.+|.. .++.|.+.+ .+|.++|+..-+... +......+++....+..+|.|++
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYt----------h~qLq~Ii~~RL~~~-----~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYT----------HEQLQEIISARLKGL-----DAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCC----------HHHHHHHHHHhhcch-----hhcchhHHHHHHHHHHhccccHH
Confidence 2333332 223344655 566667666 777777777554433 22344555555557777777776
Q ss_pred cccc
Q psy3997 241 LNFS 244 (256)
Q Consensus 241 ~~~~ 244 (256)
-++.
T Consensus 616 rald 619 (767)
T KOG1514|consen 616 RALD 619 (767)
T ss_pred HHHH
Confidence 5543
No 217
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.27 E-value=4.6e-07 Score=83.16 Aligned_cols=139 Identities=18% Similarity=0.224 Sum_probs=85.0
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-----hccchhHHH--------HHHHHH
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-----YFSESGKLV--------QKMFNK 79 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-----~~g~~~~~~--------~~~f~~ 79 (256)
.+.+-.||+.|.+||||..+|++|-+.... .+.+|+.+||..+... .+|.....+ .-+|+.
T Consensus 265 A~tdstVLi~GESGTGKElfA~~IH~~S~R------~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~ 338 (560)
T COG3829 265 AKTDSTVLILGESGTGKELFARAIHNLSPR------ANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFEL 338 (560)
T ss_pred cCCCCcEEEecCCCccHHHHHHHHHhcCcc------cCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceee
Confidence 344788999999999999999999998876 5679999999876533 334322211 012222
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
|. ..-||+|||..|.. .+...||+.|++-.-..-|-+-.....+-+++
T Consensus 339 A~--------gGTLFLDEIgempl---------------~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIA--------- 386 (560)
T COG3829 339 AN--------GGTLFLDEIGEMPL---------------PLQAKLLRVLQEKEIERVGGTKPIPVDVRIIA--------- 386 (560)
T ss_pred cc--------CCeEEehhhccCCH---------------HHHHHHHHHHhhceEEecCCCCceeeEEEEEe---------
Confidence 22 23589999999854 37788888887654433333222222222233
Q ss_pred cCHHHHHHHHHHHHhh-Hhh-------hhhccCCCCCCCCcc
Q psy3997 160 VSMENFLIALEKTVLD-LLV-------EEKSLPLKRNTEVPN 193 (256)
Q Consensus 160 i~~t~~~~~ld~ai~r-Rf~-------~~i~~~~p~~~e~~~ 193 (256)
+||. .+.+++.. +|+ .++.+..|.-.|+..
T Consensus 387 --ATN~--nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~e 424 (560)
T COG3829 387 --ATNR--NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKE 424 (560)
T ss_pred --ccCc--CHHHHHhcCcchhhheeeeceeeecCCCcccCcc
Confidence 3332 24455443 665 455566677555443
No 218
>KOG1942|consensus
Probab=98.26 E-value=1.2e-06 Score=74.92 Aligned_cols=57 Identities=35% Similarity=0.584 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
.+++||.||||||||.+|-+|++++|- +++|..+.+++.++.-+..++-.. +-|.++
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~-------kvPFcpmvgSEvyS~EvKKTEvLm-enfRRa 120 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGP-------KVPFCPMVGSEVYSNEVKKTEVLM-ENFRRA 120 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCC-------CCCcccccchhhhhhhhhHHHHHH-HHHHHH
Confidence 588999999999999999999999984 679999999998887766666433 334443
No 219
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.25 E-value=5.7e-06 Score=69.66 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=54.6
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhc------c-----------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF------S----------------- 67 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~------g----------------- 67 (256)
++++.+..++++|+||||||+++..++.+.-. .+.+.++++..+-...+. |
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~------~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~ 93 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALK------QGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPL 93 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHh------CCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEec
Confidence 57888999999999999999999999876321 133556655533322110 0
Q ss_pred ------chhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhh
Q psy3997 68 ------ESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLT 102 (256)
Q Consensus 68 ------~~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~ 102 (256)
.......++++.+...+.+ ..|.+++||++..+.
T Consensus 94 ~~~~~~~~~~~~~~ll~~l~~~i~~-~~~~~iviDs~t~~~ 133 (234)
T PRK06067 94 NTEGFEWNSTLANKLLELIIEFIKS-KREDVIIIDSLTIFA 133 (234)
T ss_pred cccccccCcchHHHHHHHHHHHHHh-cCCCEEEEecHHHHH
Confidence 0111234555555555443 477899999999764
No 220
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.23 E-value=5.7e-06 Score=74.35 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=55.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh------ccc--------hhHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------FSE--------SGKLVQKM 76 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------~g~--------~~~~~~~~ 76 (256)
+++.+...++++|+||+|||+++..+|..+.. ...++++++..+..... +|. .+..+.++
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~------~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I 150 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAK------RGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDI 150 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHH
Confidence 46777788999999999999999999987643 12467777765432221 110 12234445
Q ss_pred HHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 77 FNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 77 f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
++.+.. ..|.+|+||++..+...
T Consensus 151 ~~~i~~-----~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 151 LASIEE-----LKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HHHHHh-----cCCcEEEEcchHHhhcc
Confidence 554443 37899999999998643
No 221
>PF05729 NACHT: NACHT domain
Probab=98.23 E-value=5.8e-06 Score=65.03 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=46.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhcc-chhHHHHHHH-------HHHHHHHHhcC
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFS-ESGKLVQKMF-------NKIKEAVEYEE 88 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g-~~~~~~~~~f-------~~a~~~~~~~~ 88 (256)
+-++++|+||+|||++++.++..+............++++.+.+....-.- .-...+...+ ...........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 458999999999999999999988653211000122344444333221100 0000010000 00011112255
Q ss_pred CeEEEEeCcchhhhhh
Q psy3997 89 SLVCLLIDEIESLTRA 104 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~ 104 (256)
...+++||-+|.+...
T Consensus 81 ~~~llilDglDE~~~~ 96 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQ 96 (166)
T ss_pred CceEEEEechHhcccc
Confidence 7789999999999753
No 222
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=7.9e-06 Score=73.19 Aligned_cols=84 Identities=25% Similarity=0.378 Sum_probs=51.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccce-EEEEeccc--------------cchhhccc-hhHHH---HHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE-FIEINSHS--------------LFSKYFSE-SGKLV---QKMFNK 79 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~-~~~v~~~~--------------l~~~~~g~-~~~~~---~~~f~~ 79 (256)
.+++||||+|||++++.|++...... .++. ++.+...- ++...+.+ .+..+ ..++..
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nh----FDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNH----PEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhc----CCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999886421 1233 23322211 01111111 12222 345566
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARES 107 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~ 107 (256)
|..+. ..+...+||+||+.++......
T Consensus 248 Ae~~~-e~G~dVlL~iDsItR~arAqre 274 (416)
T PRK09376 248 AKRLV-EHGKDVVILLDSITRLARAYNT 274 (416)
T ss_pred HHHHH-HcCCCEEEEEEChHHHHHHHHh
Confidence 66554 4567889999999999876654
No 223
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.22 E-value=1e-05 Score=71.12 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=65.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccc--------hhHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSE--------SGKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~--------~~~~~~~~f~ 78 (256)
+++++.+.++++||||||||+|+..++.+... .+...+++++....... .|- ......+.+.
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~------~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHH
Confidence 57888888999999999999999988777643 23456666664422211 010 0011223333
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccC-CC-CCCcHHHHHHHHHHHHHchh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMS-GT-EPSDGVRVVNAVLTQIDQLK 132 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~-~~-~~~~~~~i~~~ll~~ld~~~ 132 (256)
.+...+ +...+.+|+||-+..+.+..+-... +. ......+.++.++..|....
T Consensus 124 ~~~~li-~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l 178 (321)
T TIGR02012 124 IAETLV-RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAL 178 (321)
T ss_pred HHHHHh-hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHH
Confidence 333332 2457889999999999864221111 10 11122355556666565543
No 224
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.22 E-value=7.8e-06 Score=75.32 Aligned_cols=83 Identities=23% Similarity=0.323 Sum_probs=56.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh------ccc--------hhHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------FSE--------SGKLVQKM 76 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------~g~--------~~~~~~~~ 76 (256)
+++++...++++|+||+|||+++..+|..... ...++++++..+..... +|. .+..+.++
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i 148 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAI 148 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHH
Confidence 56777888999999999999999999987642 13467888776543322 111 11224444
Q ss_pred HHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 77 FNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 77 f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
++.+.+ ..|.+|+||++..+...
T Consensus 149 ~~~i~~-----~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 149 LATIEE-----EKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHHHHh-----hCCCEEEEechhhhccc
Confidence 444433 37889999999998653
No 225
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.21 E-value=2e-06 Score=78.56 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=61.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-----hccchhHHHHHHHHHHHHHHHhcC
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-----YFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-----~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
+..-.||++|.+||||.++||+|-+.... .+.+|+.+||..+... .+|.....+.-.-..-...++ ..
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~S~R------~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE-~A 234 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQASPR------AKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFE-QA 234 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhhCcc------cCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCccee-Ec
Confidence 34667999999999999999999998754 4679999999876543 233221110000000000111 22
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
....+|||||..+... +...||+.|+.
T Consensus 235 ~GGTLfLDEI~~mpl~---------------~Q~kLLRvLqe 261 (464)
T COG2204 235 NGGTLFLDEIGEMPLE---------------LQVKLLRVLQE 261 (464)
T ss_pred CCceEEeeccccCCHH---------------HHHHHHHHHHc
Confidence 3457999999998653 66778888764
No 226
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.21 E-value=1.6e-06 Score=81.71 Aligned_cols=77 Identities=29% Similarity=0.376 Sum_probs=51.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH-----------H
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE-----------A 83 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----------~ 83 (256)
....|||+|++|||||++|++|.+.... ...+|+.++|..+..... -..+|...+. .
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r------~~~pfv~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~ 285 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPR------AKRPFVKVNCAALSETLL------ESELFGHEKGAFTGAIAQRKGR 285 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCC------CCCCeEEeecCCCCHHHH------HHHHcCCCCCccCCCCcCCCCc
Confidence 3567999999999999999999997643 356899999987643211 1122221100 0
Q ss_pred HHhcCCeEEEEeCcchhhhhh
Q psy3997 84 VEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+. ......||||||+.|...
T Consensus 286 ~~-~a~~GtL~ldei~~L~~~ 305 (534)
T TIGR01817 286 FE-LADGGTLFLDEIGEISPA 305 (534)
T ss_pred cc-ccCCCeEEEechhhCCHH
Confidence 11 124568999999999654
No 227
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=3.5e-06 Score=80.27 Aligned_cols=29 Identities=34% Similarity=0.778 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~ 44 (256)
.+.++|+||||||||++++.+|++++..+
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 34599999999999999999999998754
No 228
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.20 E-value=1.6e-06 Score=65.02 Aligned_cols=24 Identities=42% Similarity=1.012 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|++.||||+||||+|+.+|+.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 789999999999999999999965
No 229
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6e-06 Score=74.94 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhHhhhhhccCCCCCCCC
Q psy3997 162 MENFLIALEKTVLDLLVEEKSLPLKRNTEV 191 (256)
Q Consensus 162 ~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~ 191 (256)
..++.+.|...+++|++..++++.++..|.
T Consensus 355 ~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 355 IKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred HHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 457888899999999999999999885553
No 230
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.18 E-value=2.4e-05 Score=65.71 Aligned_cols=93 Identities=15% Similarity=0.271 Sum_probs=57.2
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-hc-------c---------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-YF-------S--------------- 67 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-~~-------g--------------- 67 (256)
++++....+.++||||||||+++..+|.....+-.........++++..+-... .+ +
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 577788889999999999999999998664321100001246777776552110 00 0
Q ss_pred chhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 68 ESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 68 ~~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
.+...+..++..+...+.+...+.+|+||-+..+..
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 011123344455555555444889999999999865
No 231
>PRK08118 topology modulation protein; Reviewed
Probab=98.18 E-value=3.9e-06 Score=67.14 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
+.|++.||||+||||+|+.+++.++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 358999999999999999999999763
No 232
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.18 E-value=5.8e-06 Score=68.81 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=52.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
|.+++||+|.-|||||++++|+-++.+. .+...++|+..++.. +-.+++..+. ...+-|||
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~------~glrLVEV~k~dl~~---------Lp~l~~~Lr~----~~~kFIlF 144 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYAD------EGLRLVEVDKEDLAT---------LPDLVELLRA----RPEKFILF 144 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHHHh------cCCeEEEEcHHHHhh---------HHHHHHHHhc----CCceEEEE
Confidence 4578999999999999999999999875 345789999877643 4455665554 45778999
Q ss_pred eCcchh
Q psy3997 95 IDEIES 100 (256)
Q Consensus 95 iDEid~ 100 (256)
+|+...
T Consensus 145 cDDLSF 150 (287)
T COG2607 145 CDDLSF 150 (287)
T ss_pred ecCCCC
Confidence 999754
No 233
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.17 E-value=1e-05 Score=65.39 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
++++||||||||+++..++.+.-. .+..+++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEECC
Confidence 689999999999999998887532 23355566553
No 234
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.17 E-value=4.6e-06 Score=80.97 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=51.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-----hccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-----YFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-----~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
....||+.|++|||||++|++|...... ...+|+.++|..+... .+|.....+......-...+. ...
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r------~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le-~a~ 470 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGR------NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE-LAD 470 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCC------CCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHH-hcC
Confidence 3567999999999999999999987643 3568999999876432 223211000000000000111 123
Q ss_pred eEEEEeCcchhhhhh
Q psy3997 90 LVCLLIDEIESLTRA 104 (256)
Q Consensus 90 p~Ii~iDEid~l~~~ 104 (256)
...||||||+.+...
T Consensus 471 ~GtL~Ldei~~L~~~ 485 (686)
T PRK15429 471 KSSLFLDEVGDMPLE 485 (686)
T ss_pred CCeEEEechhhCCHH
Confidence 578999999999654
No 235
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.15 E-value=2.6e-06 Score=67.88 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=26.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+++..|+|+|+||||||++++.+|+.++.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999999999999975
No 236
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.15 E-value=6.1e-06 Score=73.23 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS 58 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~ 58 (256)
..+.++|+||||||||++|+++|+.++. +.+.+...++.+..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~--ys~t~eG~~Y~~~~ 118 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE--YSKTPEGRRYTFKW 118 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh--hcccccCceEEEEe
Confidence 3577899999999999999999999975 11122335666665
No 237
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.15 E-value=1.7e-05 Score=69.81 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=55.2
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccc--------hhHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSE--------SGKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~--------~~~~~~~~f~ 78 (256)
++++..+-+.+|||||||||+++..++..... .+...+++++......- .|. ......+.+.
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~------~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQK------LGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHH
Confidence 57788888999999999999999998877643 23456777664321110 010 0011223334
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
.+..++. ...+.+|+||-+..+.+.
T Consensus 124 i~~~li~-s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 124 IADSLVR-SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred HHHHHHh-ccCCCEEEEcchHhhccc
Confidence 4433332 457889999999999863
No 238
>KOG2035|consensus
Probab=98.14 E-value=1.3e-05 Score=67.98 Aligned_cols=163 Identities=12% Similarity=0.186 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh-hh-----------hcccccc--------eEEEEeccccchhhccchhH-HHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI-RL-----------QSKYKIT--------EFIEINSHSLFSKYFSESGK-LVQK 75 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~-~~-----------~~~~~~~--------~~~~v~~~~l~~~~~g~~~~-~~~~ 75 (256)
+.+++|||+|+||.|.+.++-+++=. .. .....+. ..+++++|+ .|.... -+++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQe 109 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQE 109 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHH
Confidence 56899999999999999999988621 00 0000000 122333333 233222 3555
Q ss_pred HHHHHHHH----HHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhh
Q psy3997 76 MFNKIKEA----VEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTF 151 (256)
Q Consensus 76 ~f~~a~~~----~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~ 151 (256)
+.+...+. ........+|+|-|+|.|... -..+|-+.|+.+.... ++..
T Consensus 110 llKevAQt~qie~~~qr~fKvvvi~ead~LT~d---------------AQ~aLRRTMEkYs~~~---------RlIl--- 162 (351)
T KOG2035|consen 110 LLKEVAQTQQIETQGQRPFKVVVINEADELTRD---------------AQHALRRTMEKYSSNC---------RLIL--- 162 (351)
T ss_pred HHHHHHhhcchhhccccceEEEEEechHhhhHH---------------HHHHHHHHHHHHhcCc---------eEEE---
Confidence 55544322 111334569999999999654 3355666777665322 1111
Q ss_pred HhhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 152 VKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 152 ~~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
..|-...+-++|++|.- .+.+|.|+ ++....++...+......-.+..+.++++...|+
T Consensus 163 ----------~cns~SriIepIrSRCl-~iRvpaps----------~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 163 ----------VCNSTSRIIEPIRSRCL-FIRVPAPS----------DEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRN 221 (351)
T ss_pred ----------EecCcccchhHHhhhee-EEeCCCCC----------HHHHHHHHHHHHHHhcccCcHHHHHHHHHHhccc
Confidence 22333556677788753 35688888 7777888887886666555678899999999987
Q ss_pred c
Q psy3997 232 C 232 (256)
Q Consensus 232 ~ 232 (256)
.
T Consensus 222 L 222 (351)
T KOG2035|consen 222 L 222 (351)
T ss_pred H
Confidence 5
No 239
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.14 E-value=5.7e-06 Score=77.58 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=51.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH-----------H
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE-----------A 83 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----------~ 83 (256)
.+..||++|++||||+++|++|...... ...+|+.++|..+..... -..+|...+. .
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r------~~~p~v~v~c~~~~~~~~------e~~lfG~~~g~~~ga~~~~~g~ 276 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPR------ADKPLVYLNCAALPESLA------ESELFGHVKGAFTGAISNRSGK 276 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCc------CCCCeEEEEcccCChHHH------HHHhcCccccccCCCcccCCcc
Confidence 4677999999999999999999998653 356899999987643211 1122221100 1
Q ss_pred HHhcCCeEEEEeCcchhhhhh
Q psy3997 84 VEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+. ......||||||+.|...
T Consensus 277 ~~-~a~gGtL~ldeI~~L~~~ 296 (509)
T PRK05022 277 FE-LADGGTLFLDEIGELPLA 296 (509)
T ss_pred hh-hcCCCEEEecChhhCCHH
Confidence 11 124467999999999754
No 240
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.14 E-value=9.8e-06 Score=68.93 Aligned_cols=88 Identities=23% Similarity=0.366 Sum_probs=52.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc------ccchhh--------ccchh----HHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH------SLFSKY--------FSESG----KLVQKMF 77 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~------~l~~~~--------~g~~~----~~~~~~f 77 (256)
...+++.||+|+|||++++.+++.+..... ....++.+... ++.... .+... .....+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f---dv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHP---EVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccC---CeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 455999999999999999999998754200 11224442222 111111 12211 1223444
Q ss_pred HHHHHHHHhcCCeEEEEeCcchhhhhhhhc
Q psy3997 78 NKIKEAVEYEESLVCLLIDEIESLTRARES 107 (256)
Q Consensus 78 ~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~ 107 (256)
..|.... ..+...++|+||+.++...-..
T Consensus 93 ~~a~~~~-~~G~~vll~iDei~r~a~a~~e 121 (249)
T cd01128 93 EKAKRLV-EHGKDVVILLDSITRLARAYNT 121 (249)
T ss_pred HHHHHHH-HCCCCEEEEEECHHHhhhhhhh
Confidence 5554443 3567889999999999765544
No 241
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.13 E-value=6.8e-06 Score=66.02 Aligned_cols=29 Identities=45% Similarity=0.642 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
.++.++++|+||+|||++++++...+..+
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 36889999999999999999999998764
No 242
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.13 E-value=1.3e-06 Score=67.49 Aligned_cols=65 Identities=28% Similarity=0.382 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
....|+++|+|||||+++|+.+....+. ....|+.++|..+. .++++.+ .+..++
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~------~~~~~~~~~~~~~~-----------~~~l~~a--------~~gtL~ 74 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGR------ANGPFIVIDCASLP-----------AELLEQA--------KGGTLY 74 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTT------CCS-CCCCCHHCTC-----------HHHHHHC--------TTSEEE
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCc------cCCCeEEechhhCc-----------HHHHHHc--------CCCEEE
Confidence 3677999999999999999999997653 23456666766532 2233332 456799
Q ss_pred eCcchhhhhh
Q psy3997 95 IDEIESLTRA 104 (256)
Q Consensus 95 iDEid~l~~~ 104 (256)
|+|+|.+...
T Consensus 75 l~~i~~L~~~ 84 (138)
T PF14532_consen 75 LKNIDRLSPE 84 (138)
T ss_dssp EECGCCS-HH
T ss_pred ECChHHCCHH
Confidence 9999999765
No 243
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.13 E-value=2.3e-06 Score=80.30 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=57.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh--cccccceEEEEeccccchhhccchhHHHHHHHHHHH-----------
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ--SKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK----------- 81 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~--~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----------- 81 (256)
.+..||++|++||||+++|++|-+.+..... ......+|+.++|..+..... -..+|....
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~ll------eseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL------EAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhH------HHHhcCCccccccCcccccc
Confidence 3567999999999999999999887210000 011356899999987643211 111222110
Q ss_pred -HHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 82 -EAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 82 -~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
..++ ......||||||+.|... +...|+..|+.
T Consensus 315 ~Gl~e-~A~gGTLfLdeI~~Lp~~---------------~Q~kLl~~L~e 348 (538)
T PRK15424 315 AGLFE-IAHGGTLFLDEIGEMPLP---------------LQTRLLRVLEE 348 (538)
T ss_pred CCchh-ccCCCEEEEcChHhCCHH---------------HHHHHHhhhhc
Confidence 0111 113457999999999654 55666676654
No 244
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.12 E-value=2.8e-05 Score=65.40 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=30.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
+++++...+++.||||||||+++..++..+-. ++...++++..
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~------~g~~~~yi~~e 61 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQ------NGYSVSYVSTQ 61 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEEeCC
Confidence 46777888999999999999998766665422 12345666543
No 245
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.12 E-value=8.5e-06 Score=62.84 Aligned_cols=23 Identities=48% Similarity=1.031 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~ 41 (256)
|++.||||+||||+|+.+++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999999985
No 246
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.11 E-value=3.5e-06 Score=76.66 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=62.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-----ccchhHHHHHHHHHHHHHHHhcC
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-----FSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
+.+-+||+.|.+||||..+||+|-+.... ...+|+++||..+..+. +|.....+.-.+..=+..++..
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R------~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElA- 316 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPR------RDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELA- 316 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcc------cCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeec-
Confidence 34678999999999999999999998765 56799999998876442 3332222111111111111112
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
...-+|+|||..|... +...||+.|++
T Consensus 317 dGGTLFLDEIGelPL~---------------lQaKLLRvLQe 343 (550)
T COG3604 317 DGGTLFLDEIGELPLA---------------LQAKLLRVLQE 343 (550)
T ss_pred CCCeEechhhccCCHH---------------HHHHHHHHHhh
Confidence 2345899999988643 66777777754
No 247
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.11 E-value=6.3e-06 Score=74.38 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=50.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH-HHHHhcCCeEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK-EAVEYEESLVC 92 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~~~~p~I 92 (256)
..+.++++.||||||||+++.+++...-..- + -+.+ +.++|.... ..+.......+
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~s-----G---~f~T---------------~a~Lf~~L~~~~lg~v~~~Dl 263 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILIS-----G---GTIT---------------VAKLFYNISTRQIGLVGRWDV 263 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHc-----C---CcCc---------------HHHHHHHHHHHHHhhhccCCE
Confidence 3478899999999999999999888732100 0 1111 222222221 22223447789
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
|+|||+..+.-.+. ..+++.+-..|+.
T Consensus 264 LI~DEvgylp~~~~-----------~~~v~imK~yMes 290 (449)
T TIGR02688 264 VAFDEVATLKFAKP-----------KELIGILKNYMES 290 (449)
T ss_pred EEEEcCCCCcCCch-----------HHHHHHHHHHHHh
Confidence 99999998653321 2356666666653
No 248
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.11 E-value=7.8e-06 Score=73.15 Aligned_cols=88 Identities=19% Similarity=0.173 Sum_probs=59.5
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch--hhcCCCCCchhhhcccchhhHhhhhcCccCHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL--KKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFL 166 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~--~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~ 166 (256)
...|+++||+..|.. .+++.||..+..= .-.-.|.+....-++..++ +.|.= .
T Consensus 144 nRGIlYvDEvnlL~d---------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvlig-----TmNPE-----e 198 (423)
T COG1239 144 NRGILYVDEVNLLDD---------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIG-----TMNPE-----E 198 (423)
T ss_pred cCCEEEEeccccccH---------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEe-----ecCcc-----c
Confidence 346999999999853 4889999988752 3344555555555555554 22221 3
Q ss_pred HHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcC
Q psy3997 167 IALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCG 210 (256)
Q Consensus 167 ~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~ 210 (256)
..|-+-++.||...+....|.. .+.|..|.++-..
T Consensus 199 GeLrpqLlDRfg~~v~~~~~~~---------~~~rv~Ii~r~~~ 233 (423)
T COG1239 199 GELRPQLLDRFGLEVDTHYPLD---------LEERVEIIRRRLA 233 (423)
T ss_pred cccchhhHhhhcceeeccCCCC---------HHHHHHHHHHHHH
Confidence 5577788889999999998883 5777777765554
No 249
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.11 E-value=3e-06 Score=79.46 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=57.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHH-------H-----H
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI-------K-----E 82 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a-------~-----~ 82 (256)
....||+.|++||||+++|++|-+.... ...+|+.++|..+..... -..+|... . .
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r------~~~pfv~inC~~l~e~ll------eseLFG~~~gaftga~~~~~~G 301 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGR------RDFPFVAINCGAIAESLL------EAELFGYEEGAFTGARRGGRTG 301 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCc------CCCCEEEeccccCChhHH------HHHhcCCccccccccccccccc
Confidence 3567999999999999999999887543 356899999987643211 11222210 0 0
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
+++ ......||||||+.|... +...|+..|+.
T Consensus 302 l~e-~A~gGTLfLdeI~~Lp~~---------------~Q~~Ll~~L~~ 333 (526)
T TIGR02329 302 LIE-AAHRGTLFLDEIGEMPLP---------------LQTRLLRVLEE 333 (526)
T ss_pred chh-hcCCceEEecChHhCCHH---------------HHHHHHHHHhc
Confidence 111 123457999999999654 55666666654
No 250
>PRK14532 adenylate kinase; Provisional
Probab=98.08 E-value=5e-06 Score=67.55 Aligned_cols=37 Identities=19% Similarity=0.519 Sum_probs=30.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY 65 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~ 65 (256)
.|++.||||+||||+++.+|+.+|. ..+++.+++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~-----------~~is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGM-----------VQLSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-----------eEEeCcHHHHHH
Confidence 5899999999999999999999854 667777766553
No 251
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.08 E-value=6.2e-06 Score=76.67 Aligned_cols=26 Identities=46% Similarity=0.722 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...++++||||+|||++++.++..+.
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCC
Confidence 45699999999999999999998763
No 252
>PRK06762 hypothetical protein; Provisional
Probab=98.07 E-value=9.4e-06 Score=64.52 Aligned_cols=26 Identities=27% Similarity=0.719 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
|+-+++.|+||+||||+|+.+++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999999984
No 253
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.07 E-value=3.3e-05 Score=64.17 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=33.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
++++....++++|+||+|||+++..+|.+... .+.++++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~------~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAG------QGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEECC
Confidence 57777888999999999999999999988743 23355666553
No 254
>KOG2227|consensus
Probab=98.06 E-value=1.8e-05 Score=71.61 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=93.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh----------h----cc-chhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK----------Y----FS-ESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~----------~----~g-~~~~~~~~~f~~ 79 (256)
.+..+.+.|.||||||.....+-..+.... .....++++|..+... + .+ .++......|
T Consensus 174 t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~----~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~-- 247 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTALLSRVLDSLSKSS----KSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKF-- 247 (529)
T ss_pred cCcceEeeCCCCcchHHHHHHHHHhhhhhc----ccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHH--
Confidence 467899999999999999988777765432 2335688999764221 0 01 1111112222
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
.....+...+-++++||+|.|...++. ++-++.. +..+.. .++ ..
T Consensus 248 -~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lFe-wp~lp~----------sr~-----------iL 292 (529)
T KOG2227|consen 248 -EKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLFE-WPKLPN----------SRI-----------IL 292 (529)
T ss_pred -HHHHhcccceEEEEechhhHHhhcccc------------eeeeehh-cccCCc----------cee-----------ee
Confidence 222223446889999999999843321 2222211 111111 111 12
Q ss_pred cCHHHHHHHHHHHHhhH-h-----hhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 160 VSMENFLIALEKTVLDL-L-----VEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rR-f-----~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
++..|..+.-|+.+.|- . ...+.|++.+ .++-..|+.+-+.+.... ..+..-++++...+.
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYT----------k~qI~~Il~~rl~~~~t~---~~~~~Aie~~ArKva 359 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYT----------KDQIVEILQQRLSEESTS---IFLNAAIELCARKVA 359 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCC----------HHHHHHHHHHHHhccccc---ccchHHHHHHHHHhc
Confidence 23445545555555441 1 1456666666 888888888766554333 333344555555555
Q ss_pred cccCCCc
Q psy3997 234 VTSDDST 240 (256)
Q Consensus 234 ~~~~~~~ 240 (256)
+.|.|.+
T Consensus 360 a~SGDlR 366 (529)
T KOG2227|consen 360 APSGDLR 366 (529)
T ss_pred cCchhHH
Confidence 5555554
No 255
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.05 E-value=6.6e-06 Score=79.27 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=50.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH--------HHHHhc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK--------EAVEYE 87 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~--------~~~~~~ 87 (256)
...||++|++||||+++|++|.+.... ...+|+.++|..+.... .-.++|..+. ..+. .
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r------~~~pfv~vnc~~~~~~~------~~~elfg~~~~~~~~~~~g~~~-~ 414 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESER------AAGPYIAVNCQLYPDEA------LAEEFLGSDRTDSENGRLSKFE-L 414 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCc------cCCCeEEEECCCCChHH------HHHHhcCCCCcCccCCCCCcee-E
Confidence 566999999999999999999987643 34689999998764211 1112332110 0011 1
Q ss_pred CCeEEEEeCcchhhhhh
Q psy3997 88 ESLVCLLIDEIESLTRA 104 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~ 104 (256)
.....||||||+.|...
T Consensus 415 a~~GtL~ldei~~l~~~ 431 (638)
T PRK11388 415 AHGGTLFLEKVEYLSPE 431 (638)
T ss_pred CCCCEEEEcChhhCCHH
Confidence 24568999999999654
No 256
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.05 E-value=9.3e-06 Score=65.29 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+.|+|.|+||+||||+|+.++..++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 467999999999999999999999864
No 257
>PRK04296 thymidine kinase; Provisional
Probab=98.05 E-value=1.4e-05 Score=65.34 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=44.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc----ccc---hhhccch-----hHHHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH----SLF---SKYFSES-----GKLVQKMFNKIKEAV 84 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~----~l~---~~~~g~~-----~~~~~~~f~~a~~~~ 84 (256)
.-.+++||||+|||+++..++.++.. .+..++.+++. ... .+..|.. .....+++..+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--
Confidence 34789999999999999999988743 12244444331 111 1111211 1123445554443
Q ss_pred HhcCCeEEEEeCcchhh
Q psy3997 85 EYEESLVCLLIDEIESL 101 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l 101 (256)
....+.+|+|||+..+
T Consensus 75 -~~~~~dvviIDEaq~l 90 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFL 90 (190)
T ss_pred -hCCCCCEEEEEccccC
Confidence 2346789999999665
No 258
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.04 E-value=1.1e-05 Score=69.60 Aligned_cols=27 Identities=52% Similarity=0.681 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
-.+.+||.||+|||||++++..-+.+.
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCC
Confidence 367899999999999999998766553
No 259
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.03 E-value=5.1e-06 Score=66.16 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
.++|+|.|++|+||||+.+.+|+.|+.+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 4679999999999999999999999773
No 260
>PRK09354 recA recombinase A; Provisional
Probab=98.02 E-value=4.7e-05 Score=67.54 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=54.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccc--------hhHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSE--------SGKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~--------~~~~~~~~f~ 78 (256)
++++..+.++++||||||||+++..++..... .+...++++...-...- +|- ......+.+.
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~------~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~ 128 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALE 128 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHH
Confidence 57788888999999999999999988776543 23456777765422110 000 0111233344
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
.+...+. ...+.+|+||-+-.+.+
T Consensus 129 i~~~li~-s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 129 IADTLVR-SGAVDLIVVDSVAALVP 152 (349)
T ss_pred HHHHHhh-cCCCCEEEEeChhhhcc
Confidence 4443332 45788999999999986
No 261
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.02 E-value=4e-05 Score=64.10 Aligned_cols=31 Identities=39% Similarity=0.542 Sum_probs=27.0
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.++++++..+|+.||||||||+++..++..-
T Consensus 13 ~GGip~gs~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 13 GGGIPKGSVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCCcEEEEEeCCCCCcHHHHHHHHHHh
Confidence 3688889999999999999999999877553
No 262
>PRK13948 shikimate kinase; Provisional
Probab=98.01 E-value=8.4e-06 Score=66.07 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=34.5
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccc
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE 68 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~ 68 (256)
.+++..|+|.|++|+|||++++.+|+.++. .|+ +....+....|.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~---------~~i--D~D~~ie~~~g~ 51 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALML---------HFI--DTDRYIERVTGK 51 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCC---------CEE--ECCHHHHHHHhC
Confidence 346799999999999999999999999976 445 444455554443
No 263
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.00 E-value=3e-05 Score=65.52 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=26.4
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.+++++...+|++||||||||+++..++.+
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368888999999999999999999887765
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.00 E-value=2.3e-05 Score=61.44 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
+.+..+++.|+||+||||++..+|+.+...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 346789999999999999999999998764
No 265
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.00 E-value=5.6e-05 Score=63.07 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=34.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
+++++..-+.++||||+|||+++..+|...-.+-.-......+++++..+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 57788888999999999999999999887532100000014667777654
No 266
>PRK07261 topology modulation protein; Provisional
Probab=97.99 E-value=1.8e-05 Score=63.50 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|++.|+||+||||+|+.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999999865
No 267
>KOG3347|consensus
Probab=97.97 E-value=5.3e-06 Score=64.08 Aligned_cols=27 Identities=37% Similarity=0.717 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++||+.|.||||||+++..+|..++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence 578999999999999999999999865
No 268
>PRK14531 adenylate kinase; Provisional
Probab=97.96 E-value=7.9e-06 Score=66.25 Aligned_cols=37 Identities=22% Similarity=0.491 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS 63 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~ 63 (256)
++.|++.||||+||||+++.+|+.+|. ..+++.+++.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~-----------~~is~gd~lr 38 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGL-----------RHLSTGDLLR 38 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEecccHHH
Confidence 456999999999999999999999865 4566655554
No 269
>PHA02624 large T antigen; Provisional
Probab=97.96 E-value=1.5e-05 Score=74.69 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=26.4
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+|..+.++|+||||||||+++.++++.++.
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 455678999999999999999999999953
No 270
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.95 E-value=1.9e-05 Score=64.93 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+++.||+|+||||+++++++.+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999998853
No 271
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.94 E-value=5.4e-05 Score=62.93 Aligned_cols=22 Identities=32% Similarity=0.606 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~ 38 (256)
+.++|.||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999984
No 272
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.94 E-value=8.2e-06 Score=65.86 Aligned_cols=36 Identities=22% Similarity=0.564 Sum_probs=29.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY 65 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~ 65 (256)
|++.||||+||||+++.+|+.+|. ..++.++++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~-----------~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF-----------THLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-----------eEEECChHHHHH
Confidence 789999999999999999999854 677776665443
No 273
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.94 E-value=5.7e-05 Score=67.98 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=51.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc------ccc--------hhhccchhHH----HHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH------SLF--------SKYFSESGKL----VQKMF 77 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~------~l~--------~~~~g~~~~~----~~~~f 77 (256)
...+++.||||+|||++++.+++.+..... ....++.+... ++. ...+++.... ...+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhf---dv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHP---EVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCC---ceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 344999999999999999999998754200 01123333311 111 1112222221 22344
Q ss_pred HHHHHHHHhcCCeEEEEeCcchhhhhhhhc
Q psy3997 78 NKIKEAVEYEESLVCLLIDEIESLTRARES 107 (256)
Q Consensus 78 ~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~ 107 (256)
..|..+. ..+...||++||+.++......
T Consensus 245 e~Ae~~~-~~GkdVVLlIDEitR~arAqre 273 (415)
T TIGR00767 245 EKAKRLV-EHKKDVVILLDSITRLARAYNT 273 (415)
T ss_pred HHHHHHH-HcCCCeEEEEEChhHHHHHHHH
Confidence 4444443 3567789999999999876554
No 274
>PRK03839 putative kinase; Provisional
Probab=97.93 E-value=1.6e-05 Score=64.18 Aligned_cols=25 Identities=40% Similarity=0.785 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+|.|+||+||||+++.+|+.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999999975
No 275
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.91 E-value=1.5e-05 Score=62.21 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+|+++|+||+|||++++.+|+.++.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999999975
No 276
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.8e-05 Score=68.92 Aligned_cols=60 Identities=18% Similarity=0.415 Sum_probs=44.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-hhhccch-hHHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-SKYFSES-GKLVQKMFNKIKEA 83 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~~ 83 (256)
.|++||+.||+|+|||.+||.+|+-.+. +|+.|.++-+. -.|+|.. ++.+|++.+.+..+
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~a---------PFiKVEATKfTEVGYVGrDVesivRDLve~av~l 110 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGA---------PFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKL 110 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCC---------CeEEEEeeeeeecccccccHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999865 67888776553 2355653 44566665554443
No 277
>PRK00625 shikimate kinase; Provisional
Probab=97.91 E-value=1.6e-05 Score=63.94 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=23.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+|+|.|+||+||||+++.+|+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999975
No 278
>PRK13949 shikimate kinase; Provisional
Probab=97.91 E-value=1.4e-05 Score=64.09 Aligned_cols=26 Identities=42% Similarity=0.620 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.|+|.|+||+|||++++.+|+.++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999999975
No 279
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.90 E-value=8.7e-06 Score=63.76 Aligned_cols=26 Identities=35% Similarity=0.807 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
-|-+.|||||||||+++.+|+.+|.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 36789999999999999999999874
No 280
>KOG1968|consensus
Probab=97.90 E-value=7.3e-06 Score=80.35 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=91.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhcc-----c--hhHHHHHHHHHHHHHHHhcCCe
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFS-----E--SGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g-----~--~~~~~~~~f~~a~~~~~~~~~p 90 (256)
.++++||||.|||+.++.+|.++|. .+++.|+++..++... . +...+..-|..-..........
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~---------~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~ 429 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGF---------KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDH 429 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhccc---------ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccce
Confidence 4699999999999999999999986 6799999877655422 1 1112333331111100112234
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
.||++||+|.++.. + +..+..+...+.... ..+...+ -.++ ++ --
T Consensus 430 ~vil~devD~~~~~---------d---Rg~v~~l~~l~~ks~-----------~Piv~~c----ndr~------~p--~s 474 (871)
T KOG1968|consen 430 FLILMDEVDGMFGE---------D---RGGVSKLSSLCKKSS-----------RPLVCTC----NDRN------LP--KS 474 (871)
T ss_pred eEEEEeccccccch---------h---hhhHHHHHHHHHhcc-----------CCeEEEe----cCCC------Cc--cc
Confidence 49999999998751 1 123344433333111 1111111 0000 00 01
Q ss_pred HHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccC
Q psy3997 171 KTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSD 237 (256)
Q Consensus 171 ~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~ 237 (256)
+++. |-...+.|+.|+ .+.+..-+..+|......-.+..++++.+++.||++.+=+
T Consensus 475 r~~~-~~~~~l~f~kP~----------~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~ 530 (871)
T KOG1968|consen 475 RALS-RACSDLRFSKPS----------SELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIM 530 (871)
T ss_pred cchh-hhcceeeecCCc----------HHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHH
Confidence 1111 222567788888 4444444444665555554668899999999888865433
No 281
>PRK13947 shikimate kinase; Provisional
Probab=97.90 E-value=1.5e-05 Score=63.65 Aligned_cols=25 Identities=48% Similarity=0.578 Sum_probs=23.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+|++.|+||||||++++.+|+.+|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999976
No 282
>KOG1970|consensus
Probab=97.89 E-value=7.2e-05 Score=68.95 Aligned_cols=29 Identities=38% Similarity=0.787 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~ 44 (256)
.+-+||.||+||||||.++.+|.++|..+
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 35688999999999999999999999754
No 283
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.89 E-value=7.3e-05 Score=56.49 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
|-.+-|+||||||||.+++.||+.+
T Consensus 53 pLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4556689999999999999999996
No 284
>PRK04040 adenylate kinase; Provisional
Probab=97.89 E-value=3.2e-05 Score=63.02 Aligned_cols=25 Identities=40% Similarity=0.692 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++.++++|+||+||||+++.+++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999998
No 285
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00014 Score=61.82 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=75.7
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhh-------------hcccccceEEEEeccccchhhccchhHHHHHHHH
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL-------------QSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~-------------~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~ 78 (256)
+..+|-++||+||+|+||..+|.++|+.+-..- ........++.+.+.. . .-....++++-+
T Consensus 3 ~~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~---~--~I~id~ir~l~~ 77 (261)
T PRK05818 3 MKNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK---N--PIKKEDALSIIN 77 (261)
T ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc---c--cCCHHHHHHHHH
Confidence 345688999999999999999999999874321 0000111222222211 0 011223444433
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcC
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNN 158 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~ 158 (256)
.....-.+.+..-|++||++|.+... -.|.||+.|++-...+-
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~~~---------------AaNaLLK~LEEPp~~t~---------------------- 120 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLNKQ---------------SANSLLKLIEEPPKNTY---------------------- 120 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhCHH---------------HHHHHHHhhcCCCCCeE----------------------
Confidence 32211001234679999999999643 56999999997543321
Q ss_pred ccCHHHHHHHHHHHHhhHhhhhhccCCC
Q psy3997 159 SVSMENFLIALEKTVLDLLVEEKSLPLK 186 (256)
Q Consensus 159 ~i~~t~~~~~ld~ai~rRf~~~i~~~~p 186 (256)
.+-.++-++.+-+.|++|... +.++.+
T Consensus 121 fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 121 GIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred EEEEECChHhCchHhhhheee-eecCCh
Confidence 111334446777888898754 344555
No 286
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.87 E-value=9.5e-05 Score=60.82 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.+.++|.||+|+||||+.+.++...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4578999999999999999998654
No 287
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.87 E-value=1.7e-05 Score=64.04 Aligned_cols=36 Identities=33% Similarity=0.722 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
.|++.||||+||||+|+.||+.++ +..++..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~-----------i~hlstgd~~r~ 37 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG-----------LPHLDTGDILRA 37 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----------CcEEcHhHHhHh
Confidence 589999999999999999999974 367776555443
No 288
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.87 E-value=3e-05 Score=58.44 Aligned_cols=26 Identities=38% Similarity=0.386 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++++++||||+|||+++-..+.++..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh
Confidence 46899999999999999988888753
No 289
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.87 E-value=7.5e-05 Score=62.55 Aligned_cols=30 Identities=40% Similarity=0.481 Sum_probs=26.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+++++...++++||||+|||+++..++.+.
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~ 44 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKG 44 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHH
Confidence 578888999999999999999999887653
No 290
>PLN02200 adenylate kinase family protein
Probab=97.87 E-value=2.5e-05 Score=65.94 Aligned_cols=39 Identities=18% Similarity=0.497 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
.|..+++.||||+||||+++.+|+.+|. ..+++++++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~-----------~his~gdllR~ 80 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGF-----------KHLSAGDLLRR 80 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC-----------eEEEccHHHHH
Confidence 3567899999999999999999999864 56777777654
No 291
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.86 E-value=3.2e-05 Score=69.18 Aligned_cols=83 Identities=27% Similarity=0.332 Sum_probs=46.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHH--hhhhhcccccceEEEEeccccchhh---ccchh--HHHHHHHHHHHHHHHh---
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKL--SIRLQSKYKITEFIEINSHSLFSKY---FSESG--KLVQKMFNKIKEAVEY--- 86 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l--~~~~~~~~~~~~~~~v~~~~l~~~~---~g~~~--~~~~~~f~~a~~~~~~--- 86 (256)
..+++.|.||||||.+|-.+|.++ ... .....++..+... .... +.... ......+......+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~----~~~~~~l~~n~~l-~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEE----GKKVLYLCGNHPL-RNKLREQLAKKYNPKLKKSDFRKPTSFINNYSE 76 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhcccc----CCceEEEEecchH-HHHHHHHHhhhcccchhhhhhhhhHHHHhhccc
Confidence 357899999999999999999998 221 1223333333321 1111 11110 1112223333333221
Q ss_pred ----cCCeEEEEeCcchhhhhh
Q psy3997 87 ----EESLVCLLIDEIESLTRA 104 (256)
Q Consensus 87 ----~~~p~Ii~iDEid~l~~~ 104 (256)
.....||++||++.|...
T Consensus 77 ~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 77 SDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred ccccCCcCCEEEEehhHhhhhc
Confidence 235679999999999773
No 292
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.86 E-value=7.5e-05 Score=58.49 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+++.|+||+|||++++.++..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999984
No 293
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.85 E-value=8.1e-05 Score=63.30 Aligned_cols=37 Identities=32% Similarity=0.611 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
|+|.|+||+||||+|+.+++.+... +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~------~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK------NIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc------CCceEEEccHHH
Confidence 7899999999999999999998642 234555555433
No 294
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=5.2e-05 Score=62.96 Aligned_cols=27 Identities=41% Similarity=0.568 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
.+.|+.|||||||||+.|-+|+-+...
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 357999999999999999999988653
No 295
>PRK14530 adenylate kinase; Provisional
Probab=97.85 E-value=2.5e-05 Score=64.99 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.|++.||||+||||+++.+|+.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999999864
No 296
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.85 E-value=2.6e-05 Score=63.33 Aligned_cols=35 Identities=34% Similarity=0.678 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
|++.||||+||||+++.+|+.+|. ..++..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~-----------~~i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL-----------PHISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-----------eEEECcHHHHH
Confidence 799999999999999999999854 55666666544
No 297
>PRK04328 hypothetical protein; Provisional
Probab=97.84 E-value=8.1e-05 Score=63.38 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=25.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+++++...+|++||||||||+++..++.+
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 57888889999999999999999987765
No 298
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.84 E-value=3e-05 Score=73.49 Aligned_cols=141 Identities=12% Similarity=0.051 Sum_probs=90.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH-----HHHHhcCCeE
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK-----EAVEYEESLV 91 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-----~~~~~~~~p~ 91 (256)
.|+++.|++|||||+++++++..+.. ..+|..+..+......+|... +......=. ..+. .....
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~-------~~p~r~~p~~~t~~~L~Gg~D--l~~~l~~g~~~~~pGlla-~Ah~G 95 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA-------GTPLRRLPPGIADDRLLGGLD--LAATLRAGRPVAQRGLLA-EADGG 95 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC-------CCCcccCCCCCcHHHccCCch--HHhHhhcCCcCCCCCcee-eccCC
Confidence 68999999999999999999999853 246677666555555566431 222111100 0001 11236
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhh--cCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK--KSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~--~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|||+||++.+.+ .+++.|++-|+.-.. .-.|.+.....++..++ +.+.. .+...|
T Consensus 96 vL~lDe~n~~~~---------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIa-----t~~~~---~~~~~L 152 (584)
T PRK13406 96 VLVLAMAERLEP---------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVA-----LDEGA---EEDERA 152 (584)
T ss_pred EEEecCcccCCH---------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEe-----cCCCh---hcccCC
Confidence 999999999854 488999999975322 12344444445555555 12211 233567
Q ss_pred HHHHhhHhhhhhccCCCCCCC
Q psy3997 170 EKTVLDLLVEEKSLPLKRNTE 190 (256)
Q Consensus 170 d~ai~rRf~~~i~~~~p~~~e 190 (256)
..++..||+..+.++.|+..+
T Consensus 153 ~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 153 PAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred CHHhHhheEEEEEcCCCChHH
Confidence 888999999999999988554
No 299
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.84 E-value=7.5e-05 Score=58.22 Aligned_cols=24 Identities=33% Similarity=0.682 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+++.|+||+||||+|+.+++.++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 689999999999999999999754
No 300
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.83 E-value=8.2e-05 Score=66.46 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=57.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEE--Eec-----cccchhh---cc-----chhHH----HHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIE--INS-----HSLFSKY---FS-----ESGKL----VQKMFN 78 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~--v~~-----~~l~~~~---~g-----~~~~~----~~~~f~ 78 (256)
..++.||||||||++++.+|+.+... .+.+.++. +.- .++.... ++ +.... ...+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~----~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~ 210 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAAN----HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLE 210 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999988542 12223222 211 1111111 11 11111 112223
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccC----CCCCCcHHHHHHHHHHHHHc
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMS----GTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~----~~~~~~~~~i~~~ll~~ld~ 130 (256)
.|.. +.+.+...+|++||+.+++........ ....+....++..+-+.++.
T Consensus 211 ~Ae~-f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~ 265 (380)
T PRK12608 211 RAKR-LVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGA 265 (380)
T ss_pred HHHH-HHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHh
Confidence 3333 334677889999999999876544221 11122334455555555553
No 301
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.83 E-value=9.9e-05 Score=58.16 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=47.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhc---cch----hHHHHHHHHHHHHHHHhcC
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF---SES----GKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~---g~~----~~~~~~~f~~a~~~~~~~~ 88 (256)
|..|+|.|.||+||||+|+++.+.|.. .+.+.+.++...+...+. |.+ ...++.+...|+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~------~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~--- 72 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA------RGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLAD--- 72 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH------TTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHH---
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHh---
Confidence 467899999999999999999999965 356788998887765432 222 2345556555554433
Q ss_pred CeEEEEeC
Q psy3997 89 SLVCLLID 96 (256)
Q Consensus 89 ~p~Ii~iD 96 (256)
+..+++..
T Consensus 73 ~G~ivIva 80 (156)
T PF01583_consen 73 QGIIVIVA 80 (156)
T ss_dssp TTSEEEEE
T ss_pred CCCeEEEe
Confidence 33455554
No 302
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.82 E-value=5.8e-05 Score=69.69 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=53.9
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh------ccc--------hhHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------FSE--------SGKLVQKM 76 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------~g~--------~~~~~~~~ 76 (256)
+++++...++++|+||+|||+++..+|..+.. ...++++++..+..... +|. .+..+.++
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~------~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I 162 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAK------NQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQI 162 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHH
Confidence 56777888999999999999999999887643 12356777765433221 111 11123333
Q ss_pred HHHHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 77 FNKIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 77 f~~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
.+.+. ...|.+|+||.+..+..
T Consensus 163 ~~~i~-----~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 163 CANIE-----EENPQACVIDSIQTLYS 184 (454)
T ss_pred HHHHH-----hcCCcEEEEecchhhcc
Confidence 33333 23789999999998854
No 303
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.82 E-value=7.6e-05 Score=60.95 Aligned_cols=83 Identities=19% Similarity=0.358 Sum_probs=45.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc----hhhccchhHHHHHHHHH-HHHHHHhcCCeEE
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF----SKYFSESGKLVQKMFNK-IKEAVEYEESLVC 92 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~----~~~~g~~~~~~~~~f~~-a~~~~~~~~~p~I 92 (256)
-++|.|+||+|||++|+.+|++|.... .....+....+. ....+--...-++.|.. +..++...-+..+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i------~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~ 76 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEI------WRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYL 76 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhh------hhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceE
Confidence 478999999999999999999998643 233333331111 11122222222333321 1112222223568
Q ss_pred EEeCcchhhhhhhh
Q psy3997 93 LLIDEIESLTRARE 106 (256)
Q Consensus 93 i~iDEid~l~~~r~ 106 (256)
|+.|+.+...+-|.
T Consensus 77 VIvDdtNYyksmRr 90 (261)
T COG4088 77 VIVDDTNYYKSMRR 90 (261)
T ss_pred EEEecccHHHHHHH
Confidence 88898888755443
No 304
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.81 E-value=9.7e-05 Score=63.30 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=27.3
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.+++++...++++||||||||+++..+|...
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3688889999999999999999999987764
No 305
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.81 E-value=9.4e-05 Score=63.70 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=43.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc--h-hh-ccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF--S-KY-FSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~--~-~~-~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
-|+++|.||+|||++|+.|+..+.. ....+..++..++. . .| -...++.++..+..+.+..- ....||
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l--s~~~iV 74 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL--SKDTIV 74 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH--TT-SEE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh--ccCeEE
Confidence 3799999999999999999999865 23455666644433 1 11 13345666655544332221 234799
Q ss_pred EeCcchhhhhhh
Q psy3997 94 LIDEIESLTRAR 105 (256)
Q Consensus 94 ~iDEid~l~~~r 105 (256)
++|+..++-+-|
T Consensus 75 I~Dd~nYiKg~R 86 (270)
T PF08433_consen 75 ILDDNNYIKGMR 86 (270)
T ss_dssp EE-S---SHHHH
T ss_pred EEeCCchHHHHH
Confidence 999999874444
No 306
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.79 E-value=4.3e-05 Score=65.96 Aligned_cols=84 Identities=21% Similarity=0.408 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh----h---ccch------hHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK----Y---FSES------GKLVQKMFNKIK 81 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~----~---~g~~------~~~~~~~f~~a~ 81 (256)
..+.+.++|++|+|||++|+.+++.... .......-++.+........ . .+.. ........+.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~--~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 95 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRI--KNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR 95 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHH--CCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeeccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 4677999999999999999999988432 11112233334333211111 0 1111 112233333344
Q ss_pred HHHHhcCCeEEEEeCcchhhh
Q psy3997 82 EAVEYEESLVCLLIDEIESLT 102 (256)
Q Consensus 82 ~~~~~~~~p~Ii~iDEid~l~ 102 (256)
+.+ .+.+++|+||+++...
T Consensus 96 ~~L--~~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 96 ELL--KDKRCLLVLDDVWDEE 114 (287)
T ss_dssp HHH--CCTSEEEEEEEE-SHH
T ss_pred hhh--ccccceeeeeeecccc
Confidence 333 2358999999998753
No 307
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.79 E-value=4.7e-05 Score=68.18 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=26.8
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++|+|+.||||+|+|||+|.....+.+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 456999999999999999999999998754
No 308
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.78 E-value=4.4e-05 Score=64.19 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
|..|++.||||+||||+++.+|+.+|. ..++..+++..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~-----------~~is~gdllr~ 43 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENL-----------KHINMGNILRE 43 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-----------cEEECChHHHH
Confidence 566999999999999999999999864 56666666544
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=8.2e-05 Score=67.17 Aligned_cols=44 Identities=32% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS 58 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~ 58 (256)
.|+.++++||+|+||||++..+|..+..........+.++.+++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 36789999999999999999999987532111112344555555
No 310
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.76 E-value=8.9e-05 Score=64.63 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++-+++.|+||+||||+|+.+++.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence 4678999999999999999999997
No 311
>PRK14528 adenylate kinase; Provisional
Probab=97.76 E-value=6e-05 Score=61.30 Aligned_cols=26 Identities=38% Similarity=0.827 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.+++.||||+||||+++.+|+.+|.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~ 27 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSI 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999999864
No 312
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.75 E-value=0.00022 Score=63.40 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=36.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
+|++...-..++||||||||.++..+|-....|......+...+|++...
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 46777788999999999999999999876655432222345778887754
No 313
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.75 E-value=0.00024 Score=69.09 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=53.6
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-h---ccc--------hhHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-Y---FSE--------SGKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-~---~g~--------~~~~~~~~f~ 78 (256)
++++....++++||||||||+++..++..... .+...++++....... + +|- .......++.
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~------~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~ 128 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQA------AGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALE 128 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHH
Confidence 57788888999999999999999776554322 2335566666543220 0 010 0111233444
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
.+..++. ...+.+|+||-+..+.+
T Consensus 129 ~i~~lv~-~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 129 IADMLIR-SGALDIVVIDSVAALVP 152 (790)
T ss_pred HHHHHhh-cCCCeEEEEcchhhhcc
Confidence 4444433 45789999999999986
No 314
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.75 E-value=3.7e-05 Score=62.09 Aligned_cols=26 Identities=27% Similarity=0.805 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+-+++.||||+||||+++.+|+.+|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~ 29 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGF 29 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999999864
No 315
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.74 E-value=6.7e-05 Score=57.95 Aligned_cols=24 Identities=38% Similarity=0.845 Sum_probs=22.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|.+.|+||+|||++|+.+|..++.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999999976
No 316
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.74 E-value=6.4e-05 Score=67.06 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+...+++.||+|+||||+.+++.+.+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345689999999999999999999875
No 317
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.74 E-value=0.00016 Score=59.35 Aligned_cols=38 Identities=42% Similarity=0.634 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
.+..++.||||||||++++.++..+.. .+.+++.+.++
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~------~g~~v~~~apT 55 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEA------AGKRVIGLAPT 55 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHH------TT--EEEEESS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHh------CCCeEEEECCc
Confidence 456888999999999999999988754 23355555543
No 318
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=8.6e-05 Score=64.30 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhh---hc----ccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRL---QS----KYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~---~~----~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~ 87 (256)
.+-.+||+||+|+||+.+|.++|+.+-.+- .+ ......++.+.+..- +.. -+-..++++-+.+... ...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~~--I~idqiR~l~~~~~~~-p~e 93 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GRL--HSIETPRAIKKQIWIH-PYE 93 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CCc--CcHHHHHHHHHHHhhC-ccC
Confidence 367899999999999999999999985421 00 001112333322110 000 0122344444433321 112
Q ss_pred CCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhh
Q psy3997 88 ESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 88 ~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
...-|++||++|.|... -.|.||+.|++-..
T Consensus 94 ~~~kv~ii~~ad~mt~~---------------AaNaLLK~LEEPp~ 124 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD---------------AISAFLKVLEDPPQ 124 (290)
T ss_pred CCceEEEEechhhcCHH---------------HHHHHHHHhhcCCC
Confidence 34569999999999643 56999999998653
No 319
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.73 E-value=5.9e-05 Score=62.67 Aligned_cols=36 Identities=33% Similarity=0.612 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
.|+++||||+||||+++.+|+.++. ..++..+++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~-----------~~is~~dl~r~ 37 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI-----------PHISTGDMLRA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----------cEEECCccHHH
Confidence 4899999999999999999999864 66667666554
No 320
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.73 E-value=4.5e-05 Score=59.70 Aligned_cols=35 Identities=29% Similarity=0.628 Sum_probs=29.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhc
Q psy3997 21 LHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF 66 (256)
Q Consensus 21 L~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~ 66 (256)
+.||||+||||+++.||+++|. ..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~-----------~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL-----------VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS-----------EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc-----------ceechHHHHHHHH
Confidence 5799999999999999999854 7888877766543
No 321
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.73 E-value=3e-05 Score=58.33 Aligned_cols=22 Identities=41% Similarity=0.816 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l 40 (256)
|+|.|+||+||||+++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999996
No 322
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.72 E-value=0.00049 Score=57.44 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=26.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+++++...+++.|+||+|||+++..+|...
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~ 40 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQG 40 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 577788889999999999999999888763
No 323
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.71 E-value=0.00025 Score=58.52 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.+.+++.||.|+|||++.+.++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 366999999999999999999754
No 324
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.71 E-value=0.00023 Score=57.03 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
+..+++.|+||+||||+++.++..+.. .+..+..++...+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~------~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE------AGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEcCccH
Confidence 567999999999999999999999853 1224555665443
No 325
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.71 E-value=3.6e-05 Score=72.00 Aligned_cols=29 Identities=41% Similarity=0.794 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~ 44 (256)
.+-+||+||||||||++++.+|+++|..+
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 45688899999999999999999998744
No 326
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.70 E-value=0.00026 Score=62.48 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=55.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh--------hccchh------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK--------YFSESG------------ 70 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~--------~~g~~~------------ 70 (256)
++++....++++||||+|||+++..+|.....+......+...++++....... -+|...
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~ 176 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARA 176 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeC
Confidence 577888889999999999999999999875432111111236778777552110 001100
Q ss_pred ---HHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 71 ---KLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 71 ---~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
.....+...+...+.....+.+|+||-+-.++..
T Consensus 177 ~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 177 YNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRA 213 (317)
T ss_pred CCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhh
Confidence 0111223333333332246778999999998754
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00012 Score=65.66 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.0
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.....++|.||+|+||||++..+|..+-
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34467899999999999999999999863
No 328
>PF13479 AAA_24: AAA domain
Probab=97.69 E-value=9.5e-05 Score=61.46 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=40.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc---chhh------ccchhHHHHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL---FSKY------FSESGKLVQKMFNKIKEAVEY 86 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l---~~~~------~g~~~~~~~~~f~~a~~~~~~ 86 (256)
+-.+++||+||+|||+++..+ +. .+.+++..- ...+ .-.+-..+.+.++.+.+ .
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k----------~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~---~ 65 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PK----------PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEE---D 65 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CC----------eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHh---c
Confidence 567899999999999999988 32 234443222 1111 00122233344433322 2
Q ss_pred cCCeEEEEeCcchhh
Q psy3997 87 EESLVCLLIDEIESL 101 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l 101 (256)
......|+||.++.+
T Consensus 66 ~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 66 EADYDTIVIDSISWL 80 (213)
T ss_pred cCCCCEEEEECHHHH
Confidence 456779999999887
No 329
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.68 E-value=3.4e-05 Score=61.12 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|++.||||+||||+++.+++.++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999999864
No 330
>PLN02674 adenylate kinase
Probab=97.68 E-value=6e-05 Score=63.82 Aligned_cols=40 Identities=18% Similarity=0.448 Sum_probs=33.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY 65 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~ 65 (256)
+++.|+|.||||+||||.++.+|+.++. ..+++.+++...
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~-----------~his~GdllR~~ 69 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCL-----------CHLATGDMLRAA 69 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCC-----------cEEchhHHHHHH
Confidence 3577999999999999999999999854 777777776554
No 331
>KOG2170|consensus
Probab=97.68 E-value=0.00017 Score=62.08 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
|-.+-|+|+|||||..+++.||+.+
T Consensus 110 PLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 110 PLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Confidence 5667789999999999999999987
No 332
>PRK13764 ATPase; Provisional
Probab=97.67 E-value=0.00012 Score=69.43 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=25.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
...+++|+.||||+||||++++++..+..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44788999999999999999999999863
No 333
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.67 E-value=0.00046 Score=60.71 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=55.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh--------hccch-------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK--------YFSES------------- 69 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~--------~~g~~------------- 69 (256)
++++...-..++||||+|||.++..+|-....+......+...+|++...-+.. -+|..
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~ 170 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARA 170 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecC
Confidence 567778889999999999999999988655433211112346788876552110 01111
Q ss_pred --hHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 70 --GKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 70 --~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
.....+++..+...+. ...+.+|+||-+-.+++.
T Consensus 171 ~~~e~~~~~l~~l~~~i~-~~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 171 YTSEHQMELLDYLAAKFS-EEPFRLLIVDSIMALFRV 206 (313)
T ss_pred CCHHHHHHHHHHHHHHhh-ccCCCEEEEEcchHhhhh
Confidence 0111122333333332 236789999999988764
No 334
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.67 E-value=0.00066 Score=55.83 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~ 38 (256)
...++|.||.|+||||+.+.++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 45699999999999999999994
No 335
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.67 E-value=5.4e-05 Score=70.22 Aligned_cols=77 Identities=23% Similarity=0.339 Sum_probs=51.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH-----------H
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE-----------A 83 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----------~ 83 (256)
....+++.|++|||||++|+++.+.... ...+|+.++|..+.... .-..+|..... .
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~------~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~ 227 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPR------AKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGR 227 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCC------CCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCC
Confidence 3567999999999999999999997643 35689999998763321 11122221110 0
Q ss_pred HHhcCCeEEEEeCcchhhhhh
Q psy3997 84 VEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+. ......+||||++.+...
T Consensus 228 ~~-~a~~Gtl~l~~i~~l~~~ 247 (469)
T PRK10923 228 FE-QADGGTLFLDEIGDMPLD 247 (469)
T ss_pred ee-ECCCCEEEEeccccCCHH
Confidence 11 123457899999998654
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.67 E-value=0.00021 Score=62.77 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=36.1
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
++++....++++||||+|||+++..+|.....+..........++++...
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56777888999999999999999999987643221111123678888765
No 337
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.66 E-value=3.1e-05 Score=75.83 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...|||.|.||||||.+|+.+++..
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~ls 516 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLS 516 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhC
Confidence 4479999999999999999999864
No 338
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.66 E-value=0.00052 Score=58.93 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.6
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+++.+...+++.||||+|||+++..+|..+-
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4667778899999999999999999988763
No 339
>PRK06217 hypothetical protein; Validated
Probab=97.66 E-value=4.5e-05 Score=61.80 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..|++.|+||+||||+++++++.++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999999976
No 340
>PF13245 AAA_19: Part of AAA domain
Probab=97.65 E-value=6.1e-05 Score=52.08 Aligned_cols=25 Identities=44% Similarity=0.853 Sum_probs=17.9
Q ss_pred CceEEEEcCCCCcHHH-HHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTS-LCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~-la~~iA~~l 40 (256)
++.+++.||||||||+ +++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446669999999994 555555555
No 341
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.65 E-value=6.5e-05 Score=62.23 Aligned_cols=35 Identities=34% Similarity=0.663 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
|++.||||+||||+++.+|+.+|. ..+++.+++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~-----------~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL-----------PHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-----------CeeehhHHHHH
Confidence 789999999999999999999864 56666666543
No 342
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.65 E-value=0.00045 Score=56.76 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~ 38 (256)
+.++|.||.|+||||+.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4699999999999999999983
No 343
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.64 E-value=8.1e-05 Score=58.98 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|.+.|+||||||||++.+++. |.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~ 24 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GY 24 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CC
Confidence 789999999999999999998 64
No 344
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.64 E-value=6.5e-05 Score=69.33 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=56.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH-----------HHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK-----------EAV 84 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-----------~~~ 84 (256)
...++++|++||||+++|+++...... ...+|+.++|..+..... -..+|.... ..+
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~------~~~~~~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~ 233 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRR------AKGPFIKVNCAALPESLL------ESELFGHEKGAFTGAQTLRQGLF 233 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCC------CCCCeEEEECCCCCHHHH------HHHhcCCCCCCCCCCCCCCCCce
Confidence 467999999999999999999886542 346899999987643211 111222110 001
Q ss_pred HhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 85 EYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
. .....+|||||++.+... +...|+..++.
T Consensus 234 ~-~a~~gtl~ld~i~~l~~~---------------~q~~L~~~l~~ 263 (457)
T PRK11361 234 E-RANEGTLLLDEIGEMPLV---------------LQAKLLRILQE 263 (457)
T ss_pred E-ECCCCEEEEechhhCCHH---------------HHHHHHHHHhc
Confidence 1 123468999999999654 45666666654
No 345
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.64 E-value=6.2e-05 Score=69.29 Aligned_cols=77 Identities=30% Similarity=0.359 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHH-----------H
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE-----------A 83 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----------~ 83 (256)
....+++.|++||||+++|+++...... ...+|+.++|..+....+ -..+|...+. .
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~------~~~~~v~v~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~ 228 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDR------KDKRFVAINCAAIPENLL------ESELFGYEKGAFTGAVKQTLGK 228 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCc------CCCCeEEEECCCCChHHH------HHHhcCCCCCCcCCCccCCCCc
Confidence 3567999999999999999999987643 346899999987643211 1122221110 0
Q ss_pred HHhcCCeEEEEeCcchhhhhh
Q psy3997 84 VEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+. ......||||||+.|...
T Consensus 229 ~~-~a~~gtl~l~~i~~l~~~ 248 (445)
T TIGR02915 229 IE-YAHGGTLFLDEIGDLPLN 248 (445)
T ss_pred ee-ECCCCEEEEechhhCCHH
Confidence 11 124568999999999654
No 346
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.63 E-value=9.1e-05 Score=70.82 Aligned_cols=62 Identities=29% Similarity=0.263 Sum_probs=39.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-----hccchhHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-----YFSESGKLVQKMFNKIK 81 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-----~~g~~~~~~~~~f~~a~ 81 (256)
+++++|+||||||||++++++|+.++... -...++..++...... +.|.+++.++..|..|+
T Consensus 37 ~~~~ll~G~pG~GKT~la~~la~~l~~~~----~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 103 (608)
T TIGR00764 37 KRNVLLIGEPGVGKSMLAKAMAELLPDEE----LEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKAF 103 (608)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHcCchh----heeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHhh
Confidence 56899999999999999999999996531 0112334444333222 24555666666665543
No 347
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.63 E-value=5.8e-05 Score=57.90 Aligned_cols=29 Identities=45% Similarity=0.700 Sum_probs=26.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++...++|.|+.|+|||++++.+++.++.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 44667999999999999999999999975
No 348
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.63 E-value=9.2e-05 Score=59.43 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=26.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..|..|++.|+||+||||+++.+++.+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999999864
No 349
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.62 E-value=0.00018 Score=57.33 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.+++.|+||+|||++++.+|+.+|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999999999999999976
No 350
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.62 E-value=0.00027 Score=59.54 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=31.5
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS 58 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~ 58 (256)
++++..-+++.|+||+|||+++..+|...-... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-----g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ-----GKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCceEEEeC
Confidence 566677899999999999999999888764321 335566554
No 351
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.62 E-value=0.0002 Score=61.61 Aligned_cols=80 Identities=25% Similarity=0.399 Sum_probs=51.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH----------HHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK----------EAVE 85 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----------~~~~ 85 (256)
...+||.||+|.||+.+|+.|-+.-. .++--...|++|||..+... + .+..+|..++ +.+-
T Consensus 208 r~p~ll~gptgagksflarriyelk~---arhq~sg~fvevncatlrgd----~--amsalfghvkgaftga~~~r~gll 278 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQ---ARHQFSGAFVEVNCATLRGD----T--AMSALFGHVKGAFTGARESREGLL 278 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHH---HHHhcCCceEEEeeeeecCc----h--HHHHHHhhhccccccchhhhhhhh
Confidence 45589999999999999998865321 11112348999999887543 2 2334443322 1122
Q ss_pred hcCCeEEEEeCcchhhhhh
Q psy3997 86 YEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~~ 104 (256)
.......+|+|||..+...
T Consensus 279 rsadggmlfldeigelgad 297 (531)
T COG4650 279 RSADGGMLFLDEIGELGAD 297 (531)
T ss_pred ccCCCceEehHhhhhcCcc
Confidence 2335678999999988543
No 352
>PRK15115 response regulator GlrR; Provisional
Probab=97.62 E-value=7.3e-05 Score=68.80 Aligned_cols=77 Identities=26% Similarity=0.376 Sum_probs=51.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHH----------HH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEA----------VE 85 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~----------~~ 85 (256)
...++++|++|||||++|+.+.+.... ...+|+.++|..+..... -..+|..++.. .-
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r------~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~ 224 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPR------ASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLF 224 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCC------CCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcE
Confidence 456999999999999999999987643 346899999987633221 11233221110 00
Q ss_pred hcCCeEEEEeCcchhhhhh
Q psy3997 86 YEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~~ 104 (256)
.......|||||||.|...
T Consensus 225 ~~a~~gtl~l~~i~~l~~~ 243 (444)
T PRK15115 225 QAAEGGTLFLDEIGDMPAP 243 (444)
T ss_pred EECCCCEEEEEccccCCHH
Confidence 1223468999999999764
No 353
>PRK02496 adk adenylate kinase; Provisional
Probab=97.62 E-value=7.6e-05 Score=60.38 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+++.||||+||||+++.+|..++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999999864
No 354
>PRK14527 adenylate kinase; Provisional
Probab=97.61 E-value=5.9e-05 Score=61.49 Aligned_cols=28 Identities=43% Similarity=0.794 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+.-+++.||||+||||+++.+|+.++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999999865
No 355
>PTZ00035 Rad51 protein; Provisional
Probab=97.61 E-value=0.00064 Score=60.45 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=35.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
++++...-+.++||||+|||++++.+|.....|..........++++...
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 56777888999999999999999999876654321111234667777654
No 356
>PRK06547 hypothetical protein; Provisional
Probab=97.61 E-value=6.2e-05 Score=60.48 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+..|++.|++|+|||++++.+++.++.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677888999999999999999999764
No 357
>KOG2228|consensus
Probab=97.60 E-value=0.00021 Score=62.42 Aligned_cols=138 Identities=18% Similarity=0.216 Sum_probs=70.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEE--Eeccccchhh-------------------ccchhHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIE--INSHSLFSKY-------------------FSESGKL 72 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~--v~~~~l~~~~-------------------~g~~~~~ 72 (256)
.....+++.||.|+|||++....-.. ...+ +-+|+. +|+.-...+. +|....+
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls~-~q~~-----~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~ 120 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLSD-IQEN-----GENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTEN 120 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHhh-HHhc-----CCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchh
Confidence 34678999999999999976544333 1111 224444 4442221110 2222222
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhH
Q psy3997 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFV 152 (256)
Q Consensus 73 ~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~ 152 (256)
+.++....+....-...+.|.++||+|-+++...+ .-+.+.+|-..... .++++.+
T Consensus 121 l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQ--------------tllYnlfDisqs~r--------~Piciig-- 176 (408)
T KOG2228|consen 121 LSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQ--------------TLLYNLFDISQSAR--------APICIIG-- 176 (408)
T ss_pred HHHHHHHHhcCCCCCCceEEEEeehhhccccchhh--------------HHHHHHHHHHhhcC--------CCeEEEE--
Confidence 33333333322112334567778899999764321 22334444333211 1222322
Q ss_pred hhhhcCccCHHHHHHHHHHHHhhHhhhh-hccCCCC
Q psy3997 153 KYISNNSVSMENFLIALEKTVLDLLVEE-KSLPLKR 187 (256)
Q Consensus 153 ~~~~~~~i~~t~~~~~ld~ai~rRf~~~-i~~~~p~ 187 (256)
.++ --|..+.|++-+.+||..+ ++++++-
T Consensus 177 --~Tt----rld~lE~LEKRVKSRFshr~I~m~~~~ 206 (408)
T KOG2228|consen 177 --VTT----RLDILELLEKRVKSRFSHRVIFMLPSL 206 (408)
T ss_pred --eec----cccHHHHHHHHHHhhcccceeeccCCC
Confidence 111 1256688999999999987 5555554
No 358
>PRK08233 hypothetical protein; Provisional
Probab=97.60 E-value=0.00029 Score=56.52 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.-|.+.|+||+||||+++.++..++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35678889999999999999999985
No 359
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.59 E-value=6.6e-05 Score=60.26 Aligned_cols=27 Identities=37% Similarity=0.757 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|++.||+|+|||++++.+|+.++.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~ 30 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 567999999999999999999999875
No 360
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.58 E-value=0.00015 Score=65.12 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
....+|+.||+|+||||+++++.+.+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999875
No 361
>PF14516 AAA_35: AAA-like domain
Probab=97.57 E-value=0.00063 Score=60.40 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=34.4
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
..+..-+.+.||..+|||++...+.+.+.. .+...+++++..+
T Consensus 28 ~~~G~~~~I~apRq~GKTSll~~l~~~l~~------~~~~~v~id~~~~ 70 (331)
T PF14516_consen 28 VQPGSYIRIKAPRQMGKTSLLLRLLERLQQ------QGYRCVYIDLQQL 70 (331)
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHHHHH------CCCEEEEEEeecC
Confidence 445677899999999999999999988864 2557778887664
No 362
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.57 E-value=7.9e-05 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l 40 (256)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999997
No 363
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.57 E-value=0.0005 Score=61.14 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=55.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh--------hccch-------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK--------YFSES------------- 69 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~--------~~g~~------------- 69 (256)
+++++..-+.++|+||+|||+++..+|.....+..........++++...-... -++..
T Consensus 118 GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~ 197 (342)
T PLN03186 118 GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARA 197 (342)
T ss_pred CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEec
Confidence 467777789999999999999999998765543322122336788877652110 00100
Q ss_pred --hHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 70 --GKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 70 --~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
......++..+...+. ...+.+|+||-+-.+++.
T Consensus 198 ~~~e~~~~ll~~~~~~~~-~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 198 YNTDHQSELLLEAASMMA-ETRFALMIVDSATALYRT 233 (342)
T ss_pred CCHHHHHHHHHHHHHHhh-ccCCCEEEEeCcHHHHHH
Confidence 0111122222222222 346889999999998764
No 364
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.57 E-value=0.00016 Score=58.76 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.....+++.||+|+||||++++++..+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3478899999999999999999998864
No 365
>PRK13946 shikimate kinase; Provisional
Probab=97.56 E-value=0.0001 Score=59.77 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|++.|+||+|||++++.+|+.+|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999999999986
No 366
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.56 E-value=0.00048 Score=55.89 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~ 38 (256)
+++.||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999993
No 367
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.56 E-value=0.00036 Score=65.12 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=34.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
+++++...+|+.||||+|||+++..++.+.-. .+-+.++++..+-
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~------~ge~~~y~s~eEs 302 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACA------NKERAILFAYEES 302 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEeeCC
Confidence 57888888999999999999999999887632 2235566666443
No 368
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.56 E-value=0.0001 Score=65.41 Aligned_cols=74 Identities=15% Similarity=0.273 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEe-ccccch------------h-hccchhHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN-SHSLFS------------K-YFSESGKLVQKMFNKI 80 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~-~~~l~~------------~-~~g~~~~~~~~~f~~a 80 (256)
..+++++.|++|+||||+++++...+.. ..+++.+. ..++.- . -.|.......++.+.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~-------~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~ 231 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA-------IERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEAC 231 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC-------CCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHH
Confidence 4789999999999999999999998753 12333321 111110 0 0122223456666666
Q ss_pred HHHHHhcCCeEEEEeCcchh
Q psy3997 81 KEAVEYEESLVCLLIDEIES 100 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~ 100 (256)
..+ .|..|++.|+-.
T Consensus 232 LR~-----~PD~IivGEiR~ 246 (332)
T PRK13900 232 LRL-----RPDRIIVGELRG 246 (332)
T ss_pred hcc-----CCCeEEEEecCC
Confidence 543 899999999864
No 369
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.55 E-value=0.0024 Score=56.10 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=27.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
..|..|-|+|+=|+|||++.+.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 458899999999999999999999998764
No 370
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.55 E-value=0.00034 Score=64.21 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|..++++|+||+||||++..+|..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4788999999999999999999998864
No 371
>PHA02774 E1; Provisional
Probab=97.54 E-value=0.00016 Score=67.67 Aligned_cols=28 Identities=29% Similarity=0.631 Sum_probs=25.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+..++++||||||||||+++.+|++.++
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3346899999999999999999999985
No 372
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.54 E-value=0.00041 Score=56.08 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=32.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~ 62 (256)
.++.-+++.|+||+|||++++.++..+.. .....+.++...+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~------~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES------KGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECChHHH
Confidence 34677999999999999999999999853 12245666665543
No 373
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.53 E-value=0.00033 Score=60.74 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++.++|.||+|+||||++..+|..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998753
No 374
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.53 E-value=0.00062 Score=56.73 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~ 38 (256)
..++|.||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999975
No 375
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.53 E-value=6.5e-05 Score=59.58 Aligned_cols=24 Identities=38% Similarity=0.865 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|.+.|.|||||||+++.++ ++|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 57899999999999999999 8865
No 376
>PRK14526 adenylate kinase; Provisional
Probab=97.52 E-value=0.00015 Score=60.23 Aligned_cols=25 Identities=32% Similarity=0.757 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++|.||||+||||+++.+|+.++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~ 26 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNY 26 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999854
No 377
>PLN02459 probable adenylate kinase
Probab=97.52 E-value=0.00017 Score=61.45 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
+..++|.||||+||||+++.+|+.++. ..+++.+++..
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~-----------~~is~gdllR~ 66 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGV-----------PHIATGDLVRE 66 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC-----------cEEeCcHHHHH
Confidence 456889999999999999999999854 67777776544
No 378
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.51 E-value=0.00078 Score=54.00 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+++.||||+|||++|..++..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC
Confidence 4899999999999999999998754
No 379
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.51 E-value=7.5e-05 Score=65.32 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+++++.||+|+||||+++++++.+.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 468999999999999999999999874
No 380
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.51 E-value=8.6e-05 Score=61.54 Aligned_cols=23 Identities=43% Similarity=0.888 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l 40 (256)
-.++.||||||||+++.+++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 37899999999998777777776
No 381
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.51 E-value=9.9e-05 Score=63.45 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=44.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec-cccchhh------cc-chhHHHHHHHHHHHHHHHhc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS-HSLFSKY------FS-ESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~-~~l~~~~------~g-~~~~~~~~~f~~a~~~~~~~ 87 (256)
..++++.||+|+||||+++++...+... ..+++.+.. .++.-+. .. .......++++.+. .
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~------~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----R 195 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPE------DERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL-----R 195 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTT------TSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT-----T
T ss_pred ceEEEEECCCccccchHHHHHhhhcccc------ccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh-----c
Confidence 6889999999999999999999988642 124444332 2221110 11 12334556665554 3
Q ss_pred CCeEEEEeCcchh
Q psy3997 88 ESLVCLLIDEIES 100 (256)
Q Consensus 88 ~~p~Ii~iDEid~ 100 (256)
..|.+|+++|+-.
T Consensus 196 ~~pD~iiigEiR~ 208 (270)
T PF00437_consen 196 QDPDVIIIGEIRD 208 (270)
T ss_dssp S--SEEEESCE-S
T ss_pred CCCCcccccccCC
Confidence 4899999999864
No 382
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.50 E-value=0.0013 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~ 38 (256)
...+++.||.|+|||++.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999988
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.50 E-value=0.00029 Score=54.78 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++...+.+.||+|+||||+++.++..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3456688999999999999999999763
No 384
>PRK14529 adenylate kinase; Provisional
Probab=97.50 E-value=0.00014 Score=60.75 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+|.||||+||||.++.+|+.++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4899999999999999999999965
No 385
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.50 E-value=0.00016 Score=63.67 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=44.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEe-ccccch------hhccchhHHHHHHHHHHHHHHHhc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN-SHSLFS------KYFSESGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~-~~~l~~------~~~g~~~~~~~~~f~~a~~~~~~~ 87 (256)
..+++++.|++|+||||++++++..+.... +...++.+. ..++.- .+.........++.+.+..
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~----~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR----- 213 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASA----PEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMR----- 213 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCC----CCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhC-----
Confidence 368899999999999999999999873100 112333322 111110 0011112234555555443
Q ss_pred CCeEEEEeCcch
Q psy3997 88 ESLVCLLIDEIE 99 (256)
Q Consensus 88 ~~p~Ii~iDEid 99 (256)
..|..|++.|+-
T Consensus 214 ~~PD~IivGEiR 225 (323)
T PRK13833 214 LRPDRIIVGEVR 225 (323)
T ss_pred CCCCEEEEeecC
Confidence 489999999984
No 386
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.50 E-value=0.0012 Score=53.42 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=30.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhh--hhhc--ccccceEEEEecccc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI--RLQS--KYKITEFIEINSHSL 61 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~--~~~~--~~~~~~~~~v~~~~l 61 (256)
++++...-.+++||||+|||+++..+|..+-. ++.. .....++++++...-
T Consensus 27 g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 27 GLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 34444556899999999999999999887642 1100 012357788776543
No 387
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.50 E-value=0.00023 Score=61.10 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=42.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEe-ccccchhh-----cc-chhHHHHHHHHHHHHHHHhcCC
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN-SHSLFSKY-----FS-ESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~-~~~l~~~~-----~g-~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
..+++.||+|+||||+++++...+..+ ...++.+. +.++.-+. +. +.+....+....+. ...
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~------~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~l-----R~~ 149 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTP------EKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAIL-----RQD 149 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCC------CCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHh-----ccC
Confidence 458999999999999999998887421 22334432 11211110 11 11122344444444 348
Q ss_pred eEEEEeCcchh
Q psy3997 90 LVCLLIDEIES 100 (256)
Q Consensus 90 p~Ii~iDEid~ 100 (256)
|.+|+++|+..
T Consensus 150 PD~i~vgEiR~ 160 (264)
T cd01129 150 PDIIMVGEIRD 160 (264)
T ss_pred CCEEEeccCCC
Confidence 99999999954
No 388
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00057 Score=54.55 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=45.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh---ccchh----HHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY---FSESG----KLVQKMFNKIKEA 83 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~---~g~~~----~~~~~~f~~a~~~ 83 (256)
|..+.|.|.+|+||||+|.++.+.|-. .+.+.+.+++..+.... .|-+. .+++.+-..|+-+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~------~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll 91 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFA------KGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLL 91 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHH------cCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999865 46788889987764332 23322 3566666666654
No 389
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.48 E-value=0.00088 Score=62.93 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=26.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+++++...+|++|+||+|||+++..++.+.
T Consensus 26 GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~ 55 (509)
T PRK09302 26 GGLPKGRPTLVSGTAGTGKTLFALQFLVNG 55 (509)
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477888889999999999999999887653
No 390
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.47 E-value=0.00021 Score=62.99 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=46.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec-cccc---h---hhccchhHHHHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS-HSLF---S---KYFSESGKLVQKMFNKIKEAVEY 86 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~-~~l~---~---~~~g~~~~~~~~~f~~a~~~~~~ 86 (256)
...+++++.|++|+||||++++++...... .+...++.+.. .++. . .+....+....++++.+..+
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~----~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~--- 218 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQ----DPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRM--- 218 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHhhhhc----CCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcC---
Confidence 357899999999999999999999875210 01123332221 1110 0 00111122355666665543
Q ss_pred cCCeEEEEeCcchh
Q psy3997 87 EESLVCLLIDEIES 100 (256)
Q Consensus 87 ~~~p~Ii~iDEid~ 100 (256)
.|..|++.|+-.
T Consensus 219 --~PD~IivGEiR~ 230 (319)
T PRK13894 219 --RPDRILVGEVRG 230 (319)
T ss_pred --CCCEEEEeccCC
Confidence 899999999853
No 391
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.46 E-value=0.00073 Score=59.57 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=35.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
+++++..-+.++||||+|||+++..+|.....+......+...++++...
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 46777788999999999999999999875544332211223567777655
No 392
>PRK06696 uridine kinase; Validated
Probab=97.46 E-value=0.00022 Score=59.67 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~ 62 (256)
.|.-|.+.|+||+||||+|+.|++.++. .+..++.++..++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~------~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKK------RGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEecccccc
Confidence 3677899999999999999999999954 12355666655554
No 393
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.46 E-value=0.00029 Score=64.69 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=51.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHH----------
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAV---------- 84 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~---------- 84 (256)
....++++|.+||||+++|+++...... ...+|+.++|..+....+ -..+|......+
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~------~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~ 228 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSAR------SEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGR 228 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCC------CCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCc
Confidence 3567999999999999999999887543 346899999987643221 112222111000
Q ss_pred HhcCCeEEEEeCcchhhhhh
Q psy3997 85 EYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~ 104 (256)
-....++.||||||+.|...
T Consensus 229 ~~~a~~gtl~ldei~~l~~~ 248 (441)
T PRK10365 229 FVEADGGTLFLDEIGDISPM 248 (441)
T ss_pred eeECCCCEEEEeccccCCHH
Confidence 00224578999999999764
No 394
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.46 E-value=0.00027 Score=60.84 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+++++.||||+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999999875
No 395
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.43 E-value=0.00038 Score=56.19 Aligned_cols=77 Identities=23% Similarity=0.212 Sum_probs=43.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc--chhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL--FSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l--~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
++...+.+.||+|+|||||++.++..+...- --+.++...+ ......-+. -.++...-|+.++ ..|.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-------G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~---~~p~ 91 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-------DNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALL---RNAT 91 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCC-------cEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHh---cCCC
Confidence 3456688999999999999999998753211 1122222110 000000111 1233444455543 3889
Q ss_pred EEEeCcchhh
Q psy3997 92 CLLIDEIESL 101 (256)
Q Consensus 92 Ii~iDEid~l 101 (256)
++++||-..-
T Consensus 92 lllLDEPts~ 101 (177)
T cd03222 92 FYLFDEPSAY 101 (177)
T ss_pred EEEEECCccc
Confidence 9999997643
No 396
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.42 E-value=0.00026 Score=60.53 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=35.6
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
++++....+|++|+||||||+++..++...-. .+.+.++++..+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~------~ge~vlyvs~~e~ 62 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAR------EGEPVLYVSTEES 62 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh------cCCcEEEEEecCC
Confidence 67788899999999999999999998887643 2346777776543
No 397
>PRK04182 cytidylate kinase; Provisional
Probab=97.42 E-value=0.0001 Score=59.00 Aligned_cols=25 Identities=40% Similarity=0.950 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|++.|+||+|||++++.+|+.+|.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999999975
No 398
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.41 E-value=0.0015 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+|+.|+||+|||++|..++...+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~ 24 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG 24 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999998743
No 399
>PRK05973 replicative DNA helicase; Provisional
Probab=97.41 E-value=0.00031 Score=59.24 Aligned_cols=30 Identities=33% Similarity=0.391 Sum_probs=26.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+++++...+++.|+||+|||+++..+|...
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 567778889999999999999999988765
No 400
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.40 E-value=0.00014 Score=59.77 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++-+++.|+||+||||+++.+|.+++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 567999999999999999999999864
No 401
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.40 E-value=0.0027 Score=54.26 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=70.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh--------ccc--------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY--------FSE-------------- 68 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~--------~g~-------------- 68 (256)
++++...-.=++||||+|||.++..+|-....+......+...+|++...-...- ++.
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~ 112 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRV 112 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeec
Confidence 4566666677999999999999999998877654333345678888875421110 010
Q ss_pred -hhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhh
Q psy3997 69 -SGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 69 -~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
+-..+..+.......+. ..+..+|+||-|-.+++..-.. ..+.......+..++..|..+..
T Consensus 113 ~~~~~l~~~L~~l~~~l~-~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~ 175 (256)
T PF08423_consen 113 FDLEELLELLEQLPKLLS-ESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLAR 175 (256)
T ss_dssp SSHHHHHHHHHHHHHHHH-HSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcc-ccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHH
Confidence 11112233333333333 3467899999999998753221 11111223566666666655544
No 402
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.37 E-value=0.00051 Score=54.53 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.1
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+.+...+.|.||+|+||||+.+.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3446678999999999999999999875
No 403
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00046 Score=54.30 Aligned_cols=28 Identities=39% Similarity=0.630 Sum_probs=24.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++...+.+.||+|+|||+++++++..+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456789999999999999999998764
No 404
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.36 E-value=0.00017 Score=64.12 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=46.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec-cccch------------hhccchhHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS-HSLFS------------KYFSESGKLVQKMFNKI 80 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~-~~l~~------------~~~g~~~~~~~~~f~~a 80 (256)
...+++++.||+|+||||++++++..+.. ....+.+.. .++.- ...+.......++++.+
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~-------~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~ 232 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPP-------QERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQAS 232 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCC-------CCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHH
Confidence 34788999999999999999999998753 112222211 11100 00112223455566655
Q ss_pred HHHHHhcCCeEEEEeCcchh
Q psy3997 81 KEAVEYEESLVCLLIDEIES 100 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~ 100 (256)
..+ .|..|++.|+-.
T Consensus 233 LR~-----~pD~IivGEiR~ 247 (344)
T PRK13851 233 LRM-----RPDRILLGEMRD 247 (344)
T ss_pred hcC-----CCCeEEEEeeCc
Confidence 543 899999999853
No 405
>PRK14974 cell division protein FtsY; Provisional
Probab=97.35 E-value=0.00092 Score=59.33 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|..++|.||||+||||++..+|..+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999998754
No 406
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.35 E-value=0.00029 Score=61.87 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...++++.||+|+||||++++++..+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 478999999999999999999998874
No 407
>PRK13808 adenylate kinase; Provisional
Probab=97.34 E-value=0.00049 Score=60.77 Aligned_cols=36 Identities=25% Similarity=0.625 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
.|+|+||||+|||++++.||+.+|. ..++..+++..
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl-----------~~is~gdlLR~ 37 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI-----------VQLSTGDMLRA 37 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----------ceecccHHHHH
Confidence 4899999999999999999999854 66776666543
No 408
>KOG2680|consensus
Probab=97.34 E-value=0.00013 Score=62.84 Aligned_cols=51 Identities=31% Similarity=0.542 Sum_probs=43.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLV 73 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~ 73 (256)
.+.+|+.|+||||||.+|-.+++.+|. ..+|..+.++++++.-...++...
T Consensus 66 GraiLiaG~pgtGKtAiAmg~sksLG~-------~tpF~~i~gSEI~SlEmsKTEAlt 116 (454)
T KOG2680|consen 66 GRAILIAGQPGTGKTAIAMGMSKSLGD-------DTPFTSISGSEIYSLEMSKTEALT 116 (454)
T ss_pred ceEEEEecCCCCCceeeeeehhhhhCC-------CCceeeeecceeeeecccHHHHHH
Confidence 578999999999999999999999985 569999999999877666666443
No 409
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.34 E-value=0.00082 Score=55.13 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=31.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY 65 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~ 65 (256)
..|..+++.|+||+|||+++..+...++ ...++.+++.++...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--------~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--------GGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---------TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--------CCCeEEEehHHHHHhc
Confidence 4488899999999999999999999873 1256888888776554
No 410
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.32 E-value=0.00063 Score=58.68 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=47.3
Q ss_pred cccCCce-EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch------------hhccchhHHHHHHHH
Q psy3997 12 IISWNRV-VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS------------KYFSESGKLVQKMFN 78 (256)
Q Consensus 12 ~~~~~~~-iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~------------~~~g~~~~~~~~~f~ 78 (256)
+...|+| ||..||+|+||||..-+|-..++... ..+.+.+ .|-+. .-+|..-.++....+
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~-----~~HIlTI--EDPIE~vh~skkslI~QREvG~dT~sF~~aLr 192 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTLAAMIDYINKHK-----AKHILTI--EDPIEYVHESKKSLINQREVGRDTLSFANALR 192 (353)
T ss_pred HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccC-----CcceEEe--cCchHhhhcchHhhhhHHHhcccHHHHHHHHH
Confidence 3445666 66669999999999999999998643 1233332 22211 113333333444333
Q ss_pred HHHHHHHhcCCeEEEEeCcchhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESL 101 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l 101 (256)
.|- ...|.||++-|+-..
T Consensus 193 aAL-----ReDPDVIlvGEmRD~ 210 (353)
T COG2805 193 AAL-----REDPDVILVGEMRDL 210 (353)
T ss_pred HHh-----hcCCCEEEEeccccH
Confidence 333 348999999998544
No 411
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.32 E-value=0.00022 Score=58.53 Aligned_cols=28 Identities=36% Similarity=0.678 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
|+.++|.||+|+||||.+-.+|..+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 6789999999999999999999998753
No 412
>PLN02199 shikimate kinase
Probab=97.32 E-value=0.00023 Score=61.60 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++|+|.|.+|+|||++++.+|+.+|.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~ 128 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGY 128 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999999976
No 413
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.32 E-value=0.00052 Score=61.71 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+..+++.||.|||||++.+++.+.+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4788999999999999999999998853
No 414
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.31 E-value=0.0013 Score=53.85 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
.|..+.+.|+||+||||+++.++..+.. .+...+.++...+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~------~~~~~~~ld~d~~ 63 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHE------LGVSTYLLDGDNV 63 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh------CCCCEEEEcCEeH
Confidence 4677999999999999999999998842 1223455665443
No 415
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.31 E-value=0.0018 Score=51.21 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=47.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEE-Eeccc------cchhh-------cc-----------chhHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIE-INSHS------LFSKY-------FS-----------ESGKL 72 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~-v~~~~------l~~~~-------~g-----------~~~~~ 72 (256)
-+.+|+++|+|||++|-.+|-+.-. ....+.+++ +.... ..... +| +....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~----~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG----HGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH
Confidence 4788999999999999998887532 112233333 22210 00000 00 11123
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 73 ~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
.++.++.+++.+. .....+|+|||+......
T Consensus 80 a~~~~~~a~~~~~-~~~~dLlVLDEi~~a~~~ 110 (159)
T cd00561 80 AAEGWAFAKEAIA-SGEYDLVILDEINYALGY 110 (159)
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEechHhHhhC
Confidence 4556777776655 456789999999987543
No 416
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.31 E-value=0.001 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~ 38 (256)
++..-+.+.||+|+|||||.+.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3456689999999999999999864
No 417
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.30 E-value=0.00015 Score=67.14 Aligned_cols=77 Identities=23% Similarity=0.339 Sum_probs=50.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHH-----------HH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIK-----------EA 83 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-----------~~ 83 (256)
....+++.|.+||||+++|+++...... ...+|+.++|..+...++ -..+|...+ ..
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~------~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~ 223 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPR------ANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGR 223 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCC------CCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCc
Confidence 3567999999999999999999887543 356899999987643221 111221100 00
Q ss_pred HHhcCCeEEEEeCcchhhhhh
Q psy3997 84 VEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 84 ~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+. ......||||||+.+...
T Consensus 224 ~~-~a~~gtl~l~ei~~l~~~ 243 (463)
T TIGR01818 224 FE-QADGGTLFLDEIGDMPLD 243 (463)
T ss_pred EE-ECCCCeEEEEchhhCCHH
Confidence 11 123567999999998654
No 418
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.30 E-value=0.00029 Score=69.04 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=44.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh----hccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK----YFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~----~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+-+++.|+||||||++++++...+.. .+..+..+.++..-.. ..|.....++++...............
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~ 441 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEA------AGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKD 441 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHh------CCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCc
Confidence 456899999999999999999887643 1234555544322111 112222223333211110000123557
Q ss_pred EEEeCcchhh
Q psy3997 92 CLLIDEIESL 101 (256)
Q Consensus 92 Ii~iDEid~l 101 (256)
+|++||+..+
T Consensus 442 llIvDEasMv 451 (744)
T TIGR02768 442 VLVIDEAGMV 451 (744)
T ss_pred EEEEECcccC
Confidence 9999999765
No 419
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.30 E-value=0.00033 Score=61.57 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=27.3
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.++..|+|.|+||+|||++++.+|+.+|.
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~ 159 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGV 159 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 455788999999999999999999999976
No 420
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00068 Score=60.81 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=60.8
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh------cc--------chhHHHHHHH
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------FS--------ESGKLVQKMF 77 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------~g--------~~~~~~~~~f 77 (256)
++-+...+|+-|.||.|||||.-.+|..+.. .. +++||+..+-...+ .| -.+.++.++.
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~------~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~ 161 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAK------RG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDII 161 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHh------cC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHH
Confidence 4455667889999999999999999988864 22 78999987654332 11 2345567777
Q ss_pred HHHHHHHHhcCCeEEEEeCcchhhhhhh
Q psy3997 78 NKIKEAVEYEESLVCLLIDEIESLTRAR 105 (256)
Q Consensus 78 ~~a~~~~~~~~~p~Ii~iDEid~l~~~r 105 (256)
..+.+. +|.+++||-|..+....
T Consensus 162 ~~l~~~-----~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 162 AELEQE-----KPDLVVIDSIQTLYSEE 184 (456)
T ss_pred HHHHhc-----CCCEEEEeccceeeccc
Confidence 776653 99999999999987654
No 421
>PRK12338 hypothetical protein; Provisional
Probab=97.30 E-value=0.00022 Score=62.52 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|..+++.|+||+||||+|+++|..+|.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~ 30 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNI 30 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 678999999999999999999999975
No 422
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0013 Score=59.35 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.|+.++|.||+|+||||++..+|..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357899999999999999999999874
No 423
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.28 E-value=0.0051 Score=54.15 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=68.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-h---ccc--------hhHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-Y---FSE--------SGKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-~---~g~--------~~~~~~~~f~ 78 (256)
+++|..+.+-++||+|+|||+++-.+..++.. .+....++++..-+.. + .|- ......+.+.
T Consensus 48 GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~------~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~ 121 (322)
T PF00154_consen 48 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------QGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALW 121 (322)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHH
T ss_pred CccccCceEEEeCCCCCchhhhHHHHHHhhhc------ccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHH
Confidence 67777778899999999999998876666543 2345667776443222 1 010 0111234555
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccC--CCCCCcHHHHHHHHHHHHHchhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMS--GTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~--~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
.+..++. .....+|++|-+..+.+..+-... ........++++.+++.+...-.
T Consensus 122 ~~e~lir-sg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~ 177 (322)
T PF00154_consen 122 IAEQLIR-SGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLS 177 (322)
T ss_dssp HHHHHHH-TTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-cccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHH
Confidence 5554443 446678999999999877654322 22233446788888888876554
No 424
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.27 E-value=0.00024 Score=57.05 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+++.||||+||||+++.++..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999875
No 425
>PRK01184 hypothetical protein; Provisional
Probab=97.27 E-value=0.00022 Score=57.58 Aligned_cols=25 Identities=32% Similarity=0.717 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.|++.||||+||||+++ +++++|.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~ 26 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 358899999999999987 7888764
No 426
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.27 E-value=0.00026 Score=53.50 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=25.5
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
++....|+|+|+=|+|||+++|++|+.+|.+
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3456779999999999999999999999864
No 427
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0012 Score=61.34 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=26.0
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~ 44 (256)
.|||--+-+.||||||||||.+.+.+.+....
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t 97 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT 97 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhh
Confidence 45666666899999999999999999876543
No 428
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.25 E-value=0.0027 Score=50.26 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
++..++.||.|+|||++.++++-.++..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3489999999999999999998877653
No 429
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.24 E-value=0.00031 Score=56.22 Aligned_cols=24 Identities=46% Similarity=0.870 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.++|.|+||+||||+++.+++.+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh
Confidence 479999999999999999999993
No 430
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.23 E-value=0.00096 Score=53.13 Aligned_cols=28 Identities=39% Similarity=0.570 Sum_probs=24.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+...+.+.||+|+||||+++.++..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456689999999999999999999764
No 431
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.22 E-value=0.0021 Score=52.24 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=49.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc-------cchh--------------hcc----chh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS-------LFSK--------------YFS----ESG 70 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~-------l~~~--------------~~g----~~~ 70 (256)
...+.+||++|.|||+.|-.+|-+.-.. ...+.++..-... .+.. |.. +..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~----G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGH----GKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHC----CCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 4679999999999999999988764321 1112222211100 0000 000 112
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 71 KLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 71 ~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
...++.++.|++.+. .....+|++||+-.....
T Consensus 98 ~~~~~~~~~a~~~l~-~~~ydlvVLDEi~~Al~~ 130 (191)
T PRK05986 98 AAAREGWEEAKRMLA-DESYDLVVLDELTYALKY 130 (191)
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEehhhHHHHC
Confidence 345667888887765 446789999999887653
No 432
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.22 E-value=0.0008 Score=53.11 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=41.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHh-hhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeCcc
Q psy3997 20 LLHGPPGTGKTSLCKAVAQKLS-IRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEI 98 (256)
Q Consensus 20 LL~GppGtGKT~la~~iA~~l~-~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEi 98 (256)
+=.+.+||||||++.++++-++ + =.+...++.++ ....-++++.+.+. .....+||.|-=
T Consensus 3 vPIAtiGCGKTTva~aL~~LFg~w-----------gHvQnDnI~~k---~~~~f~~~~l~~L~-----~~~~~vViaDRN 63 (168)
T PF08303_consen 3 VPIATIGCGKTTVALALSNLFGEW-----------GHVQNDNITGK---RKPKFIKAVLELLA-----KDTHPVVIADRN 63 (168)
T ss_pred eeecCCCcCHHHHHHHHHHHcCCC-----------CccccCCCCCC---CHHHHHHHHHHHHh-----hCCCCEEEEeCC
Confidence 3358999999999999999986 3 23444444322 12222333343332 125568899977
Q ss_pred hhhhhhhh
Q psy3997 99 ESLTRARE 106 (256)
Q Consensus 99 d~l~~~r~ 106 (256)
+.....|+
T Consensus 64 Nh~~reR~ 71 (168)
T PF08303_consen 64 NHQKRERK 71 (168)
T ss_pred CchHHHHH
Confidence 77666554
No 433
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.22 E-value=0.00071 Score=66.09 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc----cchhhccchhHHHHHHHHHHHHH-----HHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS----LFSKYFSESGKLVQKMFNKIKEA-----VEY 86 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~----l~~~~~g~~~~~~~~~f~~a~~~-----~~~ 86 (256)
.+.+++.|+||||||++++++...+...- +...++-+.++. -+....|.....+++++...... ...
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~----~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~ 413 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELG----GLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLED 413 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhc
Confidence 45789999999999999999988775310 002333333321 11122233334455555431110 011
Q ss_pred cCCeEEEEeCcchhh
Q psy3997 87 EESLVCLLIDEIESL 101 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l 101 (256)
.....+|++||+..+
T Consensus 414 ~~~~~llIvDEaSMv 428 (720)
T TIGR01448 414 PIDCDLLIVDESSMM 428 (720)
T ss_pred cccCCEEEEeccccC
Confidence 234579999999876
No 434
>COG0645 Predicted kinase [General function prediction only]
Probab=97.22 E-value=0.0012 Score=52.26 Aligned_cols=26 Identities=42% Similarity=0.797 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.+|+.|-||||||++|+.+++.+|-
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA 27 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGA 27 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCc
Confidence 46899999999999999999999974
No 435
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0014 Score=57.20 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=56.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc--ccccc--eEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCe
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS--KYKIT--EFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~--~~~~~--~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p 90 (256)
.+..+||+|+.|.||+++++.+|+.+-..... ..... .+..++... ... +...++++.+.+...-...+..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~~i--~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---KDL--SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---CcC--CHHHHHHHHHHhccCCcccCCc
Confidence 36789999999999999999999998321000 00000 122232100 000 1123444444333211011366
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhh
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
-|++||++|.+.. .-.|.||+.|++...
T Consensus 92 KvvII~~~e~m~~---------------~a~NaLLK~LEEPp~ 119 (299)
T PRK07132 92 KILIIKNIEKTSN---------------SLLNALLKTIEEPPK 119 (299)
T ss_pred eEEEEecccccCH---------------HHHHHHHHHhhCCCC
Confidence 7999999988743 256889999987543
No 436
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.21 E-value=0.00046 Score=55.67 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhc
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF 66 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~ 66 (256)
|.+.|+||+||||+++.+++ +|. ..+++..+....+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~-----------~~i~~D~~~~~~~ 37 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGI-----------PVIDADKIAHEVY 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCC-----------CEEecCHHHHhhh
Confidence 68999999999999999999 654 4456655544443
No 437
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.20 E-value=0.0012 Score=62.79 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS 63 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~ 63 (256)
+..|++.|+||+||||+++++|..++... ..++..++......
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~-----g~~~~~lD~D~vr~ 434 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMR-----GRPVTLLDGDVVRK 434 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhhcc-----CceEEEeCCcHHHH
Confidence 56799999999999999999999997411 22456666655543
No 438
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.20 E-value=0.00076 Score=55.54 Aligned_cols=39 Identities=38% Similarity=0.589 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY 65 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~ 65 (256)
-++++||+|||||.+|-++|+.+|. +++..+.-......
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~---------pvI~~Driq~y~~l 41 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGA---------PVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH-----------EEEEE-SGGG-GGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCC---------CEEEecceeccccc
Confidence 4789999999999999999999976 66887776665544
No 439
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.20 E-value=0.00061 Score=56.23 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+.-|.+.|+||+||||+++.|++.++
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467799999999999999999999983
No 440
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.20 E-value=0.0017 Score=56.02 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++.+++.||||+||||++..+|..+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3678999999999999999999998743
No 441
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.20 E-value=0.0025 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+.+++.||...|||++.|.+|...
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 578999999999999999988753
No 442
>PRK10867 signal recognition particle protein; Provisional
Probab=97.19 E-value=0.0012 Score=60.42 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
+|..+++.||||+||||++..+|..+.... +..+..+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-----G~kV~lV~~D 138 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-----KKKVLLVAAD 138 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhc-----CCcEEEEEcc
Confidence 477899999999999999999999875420 2345555554
No 443
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.19 E-value=0.00025 Score=56.24 Aligned_cols=25 Identities=48% Similarity=0.986 Sum_probs=23.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
-|.+.|+||+|||++++.+|+.+|.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~ 26 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSL 26 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999999875
No 444
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.18 E-value=0.00012 Score=61.31 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l 40 (256)
+++.|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999983
No 445
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.18 E-value=0.00028 Score=57.30 Aligned_cols=25 Identities=40% Similarity=0.704 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..++|.||+|+||||+++.++..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999999875
No 446
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.18 E-value=0.0038 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.+.++|.||.|.|||++.+.++..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHH
Confidence 457899999999999999988875
No 447
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.17 E-value=0.00033 Score=65.77 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..+.++|.||||+|||+||+++|+.+..
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3567899999999999999999998863
No 448
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.16 E-value=0.0036 Score=58.87 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=51.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh------ccc----------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------FSE---------------- 68 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------~g~---------------- 68 (256)
++++....++++|+||+|||+++..++.+.-. .+.+.++++..+....+ +|-
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~------~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~ 341 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACR------RGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICA 341 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh------CCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecC
Confidence 56777888999999999999999998876422 23355555543322111 010
Q ss_pred --hhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 69 --SGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 69 --~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
....+...+..+...+. ...+.+|+||-+..+..
T Consensus 342 ~~~~~~~~~~~~~i~~~i~-~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 342 RPESYGLEDHLIIIKREIE-EFKPSRVAIDPLSALAR 377 (509)
T ss_pred CcccCCHHHHHHHHHHHHH-HcCCCEEEEcCHHHHHH
Confidence 00011233333333333 23678999999998864
No 449
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.15 E-value=0.00063 Score=54.97 Aligned_cols=24 Identities=38% Similarity=0.761 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|.+.|+||+||||+++.++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999863
No 450
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.15 E-value=0.0015 Score=52.72 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.+...+.|.||+|+||||+.+.++...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999999875
No 451
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.15 E-value=0.0039 Score=51.32 Aligned_cols=87 Identities=15% Similarity=0.249 Sum_probs=53.2
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-------------------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------------------------- 65 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~------------------------- 65 (256)
+++|.+.-+++.|+.|||||.+.+.+|.-+=. ......+++.......|
T Consensus 23 GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~------~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~ 96 (235)
T COG2874 23 GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLM------NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPV 96 (235)
T ss_pred CCCccCeEEEEECCCCccHHHHHHHHHHHHHh------CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEe
Confidence 46888888999999999999999999885422 23455555554332222
Q ss_pred ----ccchhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 66 ----FSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 66 ----~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+-...+..+.+.+...+... .....|++||-++.+...
T Consensus 97 ~~~~~~~~~~~~~~~L~~l~~~~k-~~~~dViIIDSls~~~~~ 138 (235)
T COG2874 97 NLEPVNWGRRSARKLLDLLLEFIK-RWEKDVIIIDSLSAFATY 138 (235)
T ss_pred cccccccChHHHHHHHHHHHhhHH-hhcCCEEEEecccHHhhc
Confidence 01122223344444433333 225578999998888653
No 452
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.015 Score=49.17 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=47.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch-----hhccc----hhHHHHH----HHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS-----KYFSE----SGKLVQK----MFNKIKEAV 84 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~-----~~~g~----~~~~~~~----~f~~a~~~~ 84 (256)
-+.+.|+-|+|||++.|++...+.. +....++++...+-. -++-. ....++. +-+...+..
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~------d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNE------DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCC------CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 4778899999999999988887763 233344555433211 11111 1112332 222223333
Q ss_pred HhcCCeEEEEeCcchhhhhh
Q psy3997 85 EYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~ 104 (256)
.+..+|.++++||++.+..+
T Consensus 127 ~~g~r~v~l~vdEah~L~~~ 146 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDS 146 (269)
T ss_pred HhCCCCeEEeehhHhhhChh
Confidence 44667899999999998543
No 453
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.15 E-value=0.00074 Score=53.94 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
.+++.||||+|||++++.+|..+.. .+.++..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~------~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK------KGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH------CCCcEEEEEcC
Confidence 3688999999999999999998753 12355666654
No 454
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.14 E-value=0.0013 Score=53.07 Aligned_cols=26 Identities=38% Similarity=0.769 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++-++|.||+|+|||++++.+++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 57799999999999999999999875
No 455
>PRK13975 thymidylate kinase; Provisional
Probab=97.14 E-value=0.00044 Score=56.33 Aligned_cols=27 Identities=37% Similarity=0.657 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++-|.+.|++|+||||+++.+|+.++.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356899999999999999999999963
No 456
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.14 E-value=0.00041 Score=56.66 Aligned_cols=24 Identities=46% Similarity=0.721 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|-+.||||+||||+|+.++..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 578999999999999999999974
No 457
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.13 E-value=0.00072 Score=60.60 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+...+++.||+|+||||+++++++.+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445689999999999999999999874
No 458
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.13 E-value=0.0031 Score=64.98 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
.+.+-++|++|+||||+|+++++.+...
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 5678999999999999999999987653
No 459
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00043 Score=56.83 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++..+.+.||+|+|||++++.+++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467799999999999999999999864
No 460
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0031 Score=53.71 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=24.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.....+-|.|.+||||||++|.+.+-..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 3467789999999999999999998765
No 461
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.10 E-value=0.00091 Score=54.80 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhc
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF 66 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~ 66 (256)
-|.+.|++|+|||++++.+++.+|. ..+++..+....+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~-----------~~i~~D~~~~~~~ 40 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGI-----------PILDADIYAREAL 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC-----------eEeeCcHHHHHHH
Confidence 4889999999999999999998764 4456766654444
No 462
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0015 Score=52.62 Aligned_cols=27 Identities=33% Similarity=0.667 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++-++|.||+|+||||+++++-...+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l 30 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKL 30 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCe
Confidence 456889999999999999999988743
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.09 E-value=0.00049 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.-+.+.||+|+||||++++++..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34477889999999999999999874
No 464
>KOG3354|consensus
Probab=97.09 E-value=0.00054 Score=53.46 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=27.8
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
+-+.+-.+++.|++|+||||++++++++++++
T Consensus 8 ~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~ 39 (191)
T KOG3354|consen 8 MGPFKYVIVVMGVSGSGKSTIGKALSEELGLK 39 (191)
T ss_pred cCCCceeEEEEecCCCChhhHHHHHHHHhCCc
Confidence 44566689999999999999999999999863
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.09 E-value=0.0037 Score=52.76 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh--hhhhc----ccccceEEEEeccc
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLS--IRLQS----KYKITEFIEINSHS 60 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~--~~~~~----~~~~~~~~~v~~~~ 60 (256)
-+++||||+|||+++..+|.... .++.. .....++++++..+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 48999999999999999887643 22211 11245677877654
No 466
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.08 E-value=0.0019 Score=62.37 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhc---cc----hhHHHHHHHHHHHHHHHhc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF---SE----SGKLVQKMFNKIKEAVEYE 87 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~---g~----~~~~~~~~f~~a~~~~~~~ 87 (256)
.|.-+++.|.||+||||+|+++++.++. ....+..++..++..... +. ....++.+...+....
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~------~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~--- 529 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHA------LGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMA--- 529 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHH------cCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence 3677999999999999999999999853 123556676655543222 11 2233444544444432
Q ss_pred CCeEEEEeCc
Q psy3997 88 ESLVCLLIDE 97 (256)
Q Consensus 88 ~~p~Ii~iDE 97 (256)
....+|++|-
T Consensus 530 ~~G~~Vivda 539 (632)
T PRK05506 530 DAGLIVLVSF 539 (632)
T ss_pred hCCCEEEEEC
Confidence 2345667763
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.08 E-value=0.00051 Score=64.12 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=26.6
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.+++++.+.+|+.||||||||+++..++.+
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~ 44 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 44 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999988654
No 468
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.07 E-value=0.0019 Score=59.27 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.++.++|.||+|+||||++..+|..+.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999998874
No 469
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.05 E-value=0.0018 Score=57.28 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+.+.+.|+||+|||||++.+++.++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 568999999999999999999999875
No 470
>KOG2543|consensus
Probab=97.04 E-value=0.0024 Score=56.79 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
.|..+.+||..|||||.+++.+-+.++. +.+.++|-+
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~---------~~vw~n~~e 65 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNL---------ENVWLNCVE 65 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCC---------cceeeehHH
Confidence 4677899999999999999999999865 456666644
No 471
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.04 E-value=0.0006 Score=59.31 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|..+++.|++|||||++|..+|+.++.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~ 118 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGI 118 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999999965
No 472
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.04 E-value=0.0015 Score=61.25 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.|.-|+++|+||+||||+|+.++...+
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g 394 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAG 394 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467799999999999999999999864
No 473
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0037 Score=56.21 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=24.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..++.+++.||+|+||||++..+|..+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998763
No 474
>PRK12678 transcription termination factor Rho; Provisional
Probab=97.02 E-value=0.004 Score=58.59 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=50.6
Q ss_pred cccCCce--EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc---------------cchhhccchhHH--
Q psy3997 12 IISWNRV--VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS---------------LFSKYFSESGKL-- 72 (256)
Q Consensus 12 ~~~~~~~--iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~---------------l~~~~~g~~~~~-- 72 (256)
++|..+| .|+.||||||||+|++.||+.+.. +++.+.++++-..+ ++...+.+....
T Consensus 410 l~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~----n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~ 485 (672)
T PRK12678 410 IMPIGKGQRGLIVSPPKAGKTTILQNIANAITT----NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHT 485 (672)
T ss_pred ecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh----cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHH
Confidence 3444444 899999999999999999997632 12344444332211 111111111111
Q ss_pred --HHHHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhc
Q psy3997 73 --VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARES 107 (256)
Q Consensus 73 --~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~ 107 (256)
.......|. .+.+.....+|++|.+-++...-..
T Consensus 486 ~~a~~ai~~Ae-~fre~G~dVlillDSlTR~ArAyre 521 (672)
T PRK12678 486 TVAELAIERAK-RLVELGKDVVVLLDSITRLGRAYNL 521 (672)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEEeCchHHHHHHHH
Confidence 111222233 3334667889999999998765443
No 475
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.02 E-value=0.00057 Score=56.45 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.++-++|.||||+|||++++.+++.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3566889999999999999999764
No 476
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=97.02 E-value=0.012 Score=48.21 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
.++|+.|.||+|||+++++++..+-... ....++++-+++.
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~--~p~~~~l~iiD~k 79 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTY--SPDDVQLYIIDPK 79 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT----TTTEEEEEE-TT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHh--cCCccEEEEEcCC
Confidence 4899999999999999999888875421 1135677777765
No 477
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.02 E-value=0.00058 Score=55.54 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.|+-++|.||||+|||++++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 36789999999999999999998875
No 478
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.02 E-value=0.00093 Score=44.10 Aligned_cols=23 Identities=43% Similarity=0.793 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l 40 (256)
..+++||.|+||||+..|+.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999998876
No 479
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.02 E-value=0.00083 Score=63.53 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
...|+|.|.||+||||+.+.+|+.+++
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~ 32 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRL 32 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456999999999999999999999987
No 480
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.01 E-value=0.00085 Score=69.18 Aligned_cols=138 Identities=22% Similarity=0.234 Sum_probs=73.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc------cchhh-ccc--hhHHHHH-HHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS------LFSKY-FSE--SGKLVQK-MFNKIKEAVE 85 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~------l~~~~-~g~--~~~~~~~-~f~~a~~~~~ 85 (256)
.+++||.|.||+|||.+..++|+..|. +.+.++-++ +.++. .++ ++...++ =|-.|..
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~---------kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr--- 1610 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGK---------KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR--- 1610 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcC---------ceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh---
Confidence 577999999999999999999999987 446666643 22221 222 1111111 2322222
Q ss_pred hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHh-hhhcCccCHHH
Q psy3997 86 YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVK-YISNNSVSMEN 164 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~-~~~~~~i~~t~ 164 (256)
...-|++||++-... .++..|-.+||.-.. .+.......+....... ++..|+...-+
T Consensus 1611 ---~G~WVlLDEiNLaSQ---------------SVlEGLNacLDhR~e---ayIPEld~~f~~HpnfrVFAaqNPq~qgg 1669 (4600)
T COG5271 1611 ---DGGWVLLDEINLASQ---------------SVLEGLNACLDHRRE---AYIPELDKTFDVHPNFRVFAAQNPQDQGG 1669 (4600)
T ss_pred ---cCCEEEeehhhhhHH---------------HHHHHHHHHHhhccc---cccccccceeeccCCeeeeeecCchhcCC
Confidence 445789999986532 366777677765322 11111111221111111 11223333333
Q ss_pred HHHHHHHHHhhHhhhhhccCCCC
Q psy3997 165 FLIALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 165 ~~~~ld~ai~rRf~~~i~~~~p~ 187 (256)
--..|.+.+..||..+ +++.-+
T Consensus 1670 GRKgLPkSF~nRFsvV-~~d~lt 1691 (4600)
T COG5271 1670 GRKGLPKSFLNRFSVV-KMDGLT 1691 (4600)
T ss_pred CcccCCHHHhhhhheE-Eecccc
Confidence 3345677777788643 333333
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.00 E-value=0.00071 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...+.+.||+|+||||+++.++..++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999999985
No 482
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.00 E-value=0.0013 Score=53.89 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhc
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF 66 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~ 66 (256)
..|.+.|++|+||||+++.+++ +|. ..+++..+....+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~-----------~~i~~D~~~~~~~ 40 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGA-----------PVIDADAIAHEVV 40 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCC-----------EEEEecHHHHHHh
Confidence 4689999999999999999998 654 4566665554443
No 483
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.003 Score=59.01 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=25.1
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.....+.|.||+|+||||++..+|..+-
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45577899999999999999999998764
No 484
>PRK07667 uridine kinase; Provisional
Probab=96.99 E-value=0.0013 Score=53.82 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.-|.+.|+||+||||+++.+++.++.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45788999999999999999999864
No 485
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.99 E-value=0.0054 Score=49.14 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=48.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccc---eEEEEe--cccc--c-----------h--hhcc----chhHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKIT---EFIEIN--SHSL--F-----------S--KYFS----ESGKLV 73 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~---~~~~v~--~~~l--~-----------~--~~~g----~~~~~~ 73 (256)
-+.+|+++|.|||+.|-.+|-+.-.. ...+ +|+.-. ..+. . . .|.. +.....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~----g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH----GKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC----CCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 47889999999999999998875321 1122 122111 1110 0 0 0001 112346
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 74 QKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 74 ~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
++.++.|++.+. .....+|++||+......
T Consensus 83 ~~~~~~a~~~l~-~~~~DlvVLDEi~~A~~~ 112 (173)
T TIGR00708 83 KAAWQHAKEMLA-DPELDLVLLDELTYALKY 112 (173)
T ss_pred HHHHHHHHHHHh-cCCCCEEEehhhHHHHHC
Confidence 667777777665 456789999999877643
No 486
>PLN02165 adenylate isopentenyltransferase
Probab=96.98 E-value=0.00069 Score=59.75 Aligned_cols=27 Identities=30% Similarity=0.628 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.++|.||+|+|||+++..+|..++.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 446899999999999999999999864
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.98 E-value=0.00068 Score=55.44 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l 40 (256)
+.+.||+|+||||++++++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987
No 488
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.97 E-value=0.00079 Score=59.04 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++-+++.||+|+|||++|..+|++++.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 567999999999999999999999864
No 489
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.97 E-value=0.00064 Score=54.57 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+-++|.||+|+|||++++.+++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 4589999999999999999999753
No 490
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.96 E-value=0.0034 Score=57.52 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=29.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
.|..+++.|+||+||||++..+|..+... .+.++..+++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~-----~g~kV~lV~~D 137 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK-----QGKKVLLVACD 137 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEecc
Confidence 36789999999999999999999986311 12355556654
No 491
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0033 Score=57.25 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+..+++.||+|+||||++..+|....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~ 248 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF 248 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998653
No 492
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.94 E-value=0.0031 Score=54.25 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=41.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccch--hHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSES--GKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~--~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
....||.|.+|+||+++++-.|...+. .++++..+.- ++.. ...+++++..|- -.+.|.++
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~---------~~~~i~~~~~----y~~~~f~~dLk~~~~~ag----~~~~~~vf 93 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGY---------EVFQIEITKG----YSIKDFKEDLKKALQKAG----IKGKPTVF 93 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTE---------EEE-TTTSTT----THHHHHHHHHHHHHHHHH----CS-S-EEE
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhcc---------ceEEEEeeCC----cCHHHHHHHHHHHHHHHh----ccCCCeEE
Confidence 355999999999999999987777643 6677664421 1211 123444444433 25678888
Q ss_pred EeCcch
Q psy3997 94 LIDEIE 99 (256)
Q Consensus 94 ~iDEid 99 (256)
+++|-+
T Consensus 94 ll~d~q 99 (268)
T PF12780_consen 94 LLTDSQ 99 (268)
T ss_dssp EEECCC
T ss_pred EecCcc
Confidence 887754
No 493
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.93 E-value=0.0017 Score=60.54 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=23.2
Q ss_pred cCCce-EEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRV-VLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~-iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+.| +++.||+|+||||+.+++.+++.
T Consensus 239 ~~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 239 RRPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 33555 68999999999999999888775
No 494
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.92 E-value=0.0041 Score=54.44 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+..+.+.||||+|||+++..++..+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4677999999999999999999998743
No 495
>PLN02840 tRNA dimethylallyltransferase
Probab=96.91 E-value=0.0038 Score=56.85 Aligned_cols=27 Identities=33% Similarity=0.720 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.+++.||+|+|||+++..+|+.++.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 456899999999999999999999874
No 496
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.91 E-value=0.00088 Score=49.34 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVA 37 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA 37 (256)
...+.|.||+|+||||+++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 5679999999999999999987
No 497
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.89 E-value=0.0021 Score=64.49 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
..-+++.|+||||||++.+++...+.. .+..++-+.++..-.+- .|.....++.++......-.......
T Consensus 362 ~~v~vv~G~AGTGKTT~l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~ 435 (988)
T PRK13889 362 RDLGVVVGYAGTGKSAMLGVAREAWEA------AGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRD 435 (988)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCc
Confidence 345789999999999999887766532 12344544443221111 22223334444321110000122456
Q ss_pred EEEeCcchhh
Q psy3997 92 CLLIDEIESL 101 (256)
Q Consensus 92 Ii~iDEid~l 101 (256)
+|+|||+..+
T Consensus 436 vlIVDEASMv 445 (988)
T PRK13889 436 VLVIDEAGMV 445 (988)
T ss_pred EEEEECcccC
Confidence 9999999866
No 498
>PRK06761 hypothetical protein; Provisional
Probab=96.89 E-value=0.00089 Score=57.90 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+-+++.||||+||||+++.+++.+..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 356899999999999999999999864
No 499
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.88 E-value=0.00059 Score=61.81 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=27.1
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.....|||+.||||.||||+|+++|+.+..
T Consensus 259 L~eraeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 259 LEERAEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred HHhhhcceEEecCCCCChhHHHHHHHHHHHh
Confidence 3445789999999999999999999998864
No 500
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.86 E-value=0.00088 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.780 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+++.||+|+|||++++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 67899999999999999999864
Done!