Query psy3997
Match_columns 256
No_of_seqs 194 out of 2602
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 22:42:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2E-37 7E-42 276.3 6.4 181 10-248 176-358 (405)
2 4b4t_I 26S protease regulatory 100.0 4.2E-36 1.4E-40 268.7 4.6 182 9-248 209-392 (437)
3 4b4t_M 26S protease regulatory 100.0 5.7E-36 2E-40 270.3 3.9 182 9-248 208-391 (434)
4 4b4t_H 26S protease regulatory 100.0 1.6E-35 5.6E-40 267.2 6.3 181 10-248 237-419 (467)
5 4b4t_L 26S protease subunit RP 100.0 1.2E-35 4.3E-40 268.3 5.1 181 10-248 209-391 (437)
6 4b4t_K 26S protease regulatory 100.0 2.6E-35 8.9E-40 265.8 6.5 181 10-248 200-383 (428)
7 3cf2_A TER ATPase, transitiona 100.0 1.1E-33 3.6E-38 271.8 1.9 182 9-248 504-687 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.4E-31 4.9E-36 257.1 4.2 179 9-248 231-411 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.1E-28 7.3E-33 214.5 10.8 179 12-248 41-219 (322)
10 3eie_A Vacuolar protein sortin 99.9 8.8E-28 3E-32 210.5 11.4 178 12-248 47-224 (322)
11 2qp9_X Vacuolar protein sortin 99.9 4.5E-27 1.5E-31 208.7 9.6 177 13-248 81-257 (355)
12 2zan_A Vacuolar protein sortin 99.9 8.9E-27 3.1E-31 212.5 7.2 178 13-248 164-341 (444)
13 3cf0_A Transitional endoplasmi 99.9 1.5E-26 5.1E-31 200.9 7.2 179 12-248 45-225 (301)
14 2x8a_A Nuclear valosin-contain 99.9 6.6E-26 2.2E-30 194.4 6.9 177 12-248 40-222 (274)
15 2ce7_A Cell division protein F 99.9 2.4E-25 8.3E-30 203.7 8.7 173 12-230 45-219 (476)
16 2qz4_A Paraplegin; AAA+, SPG7, 99.9 4.4E-25 1.5E-29 186.8 6.5 175 12-230 35-212 (262)
17 3b9p_A CG5977-PA, isoform A; A 99.9 2.5E-24 8.7E-29 185.8 10.1 172 14-230 52-223 (297)
18 3t15_A Ribulose bisphosphate c 99.9 7.5E-25 2.6E-29 189.5 6.0 179 12-230 32-214 (293)
19 3d8b_A Fidgetin-like protein 1 99.9 2.9E-24 1E-28 190.7 9.4 171 14-230 115-285 (357)
20 3vfd_A Spastin; ATPase, microt 99.9 4.7E-24 1.6E-28 191.4 10.4 172 14-231 146-317 (389)
21 3hu3_A Transitional endoplasmi 99.9 7.5E-25 2.6E-29 201.6 4.7 169 13-230 235-405 (489)
22 1lv7_A FTSH; alpha/beta domain 99.9 2.8E-24 9.4E-29 182.1 7.6 173 12-230 41-215 (257)
23 3h4m_A Proteasome-activating n 99.9 5.1E-24 1.7E-28 182.8 8.6 173 12-230 47-221 (285)
24 1ypw_A Transitional endoplasmi 99.9 2.5E-25 8.5E-30 216.0 -4.3 179 12-248 507-687 (806)
25 2dhr_A FTSH; AAA+ protein, hex 99.9 1.8E-23 6.3E-28 192.3 3.3 174 12-231 60-235 (499)
26 2r62_A Cell division protease 99.9 3.8E-25 1.3E-29 188.3 -7.8 175 12-230 40-216 (268)
27 1ixz_A ATP-dependent metallopr 99.9 1.2E-22 4.1E-27 171.7 5.2 173 12-230 45-219 (254)
28 1iy2_A ATP-dependent metallopr 99.8 1.6E-21 5.6E-26 167.0 6.2 173 13-231 70-244 (278)
29 1ypw_A Transitional endoplasmi 99.8 1.1E-20 3.6E-25 183.6 5.9 171 12-231 234-406 (806)
30 3syl_A Protein CBBX; photosynt 99.8 1.6E-18 5.5E-23 150.0 10.7 171 14-227 65-235 (309)
31 2c9o_A RUVB-like 1; hexameric 99.8 7.4E-22 2.5E-26 180.6 -12.4 86 13-108 60-145 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.7 2.5E-17 8.4E-22 140.4 7.8 162 13-230 61-228 (272)
33 1ofh_A ATP-dependent HSL prote 99.7 1E-17 3.5E-22 144.5 3.5 184 15-228 49-247 (310)
34 3hws_A ATP-dependent CLP prote 99.7 3.4E-17 1.2E-21 145.3 6.2 107 14-131 49-157 (363)
35 1g41_A Heat shock protein HSLU 99.7 2.3E-17 7.9E-22 149.2 4.6 128 15-188 49-180 (444)
36 3uk6_A RUVB-like 2; hexameric 99.7 5.3E-17 1.8E-21 143.7 5.7 175 15-233 69-297 (368)
37 3pfi_A Holliday junction ATP-d 99.6 1.1E-16 3.8E-21 140.2 5.4 161 15-233 54-221 (338)
38 1jbk_A CLPB protein; beta barr 99.6 8.5E-16 2.9E-20 122.5 6.6 87 15-105 42-131 (195)
39 1l8q_A Chromosomal replication 99.6 8.6E-16 3E-20 134.0 7.0 165 16-234 37-203 (324)
40 3m6a_A ATP-dependent protease 99.6 1.6E-16 5.5E-21 148.1 0.5 147 15-209 107-266 (543)
41 3u61_B DNA polymerase accessor 99.6 2.1E-15 7.3E-20 131.4 7.4 158 15-235 47-212 (324)
42 2z4s_A Chromosomal replication 99.6 1.1E-15 3.9E-20 139.0 5.6 170 16-235 130-302 (440)
43 2p65_A Hypothetical protein PF 99.6 4E-15 1.4E-19 118.3 7.5 138 15-187 42-187 (187)
44 3pvs_A Replication-associated 99.6 3.1E-15 1.1E-19 136.2 6.5 153 17-234 51-210 (447)
45 3bos_A Putative DNA replicatio 99.5 6.6E-15 2.3E-19 121.9 7.1 161 15-235 51-213 (242)
46 1sxj_A Activator 1 95 kDa subu 99.5 1.3E-15 4.3E-20 141.3 2.5 167 14-235 75-248 (516)
47 2chg_A Replication factor C sm 99.5 1.6E-14 5.4E-19 117.7 8.8 160 17-234 39-199 (226)
48 3te6_A Regulatory protein SIR3 99.5 1.7E-14 5.9E-19 125.4 7.8 150 15-209 44-211 (318)
49 2v1u_A Cell division control p 99.5 3.8E-14 1.3E-18 125.4 9.5 183 14-233 42-243 (387)
50 4fcw_A Chaperone protein CLPB; 99.5 2.2E-14 7.5E-19 123.9 7.2 173 16-228 47-257 (311)
51 1qvr_A CLPB protein; coiled co 99.5 8.2E-15 2.8E-19 143.4 5.0 172 15-232 190-372 (854)
52 1hqc_A RUVB; extended AAA-ATPa 99.5 6.6E-15 2.3E-19 127.9 3.4 163 15-234 37-206 (324)
53 1sxj_D Activator 1 41 kDa subu 99.5 1E-13 3.5E-18 121.5 9.5 161 17-234 59-230 (353)
54 1um8_A ATP-dependent CLP prote 99.5 9.5E-14 3.3E-18 123.5 8.0 107 14-131 70-178 (376)
55 3pxi_A Negative regulator of g 99.4 9.7E-14 3.3E-18 134.1 7.6 147 18-209 523-675 (758)
56 1r6b_X CLPA protein; AAA+, N-t 99.4 1.6E-13 5.5E-18 132.6 8.8 147 17-210 489-667 (758)
57 1r6b_X CLPA protein; AAA+, N-t 99.4 3.1E-14 1.1E-18 137.6 2.7 171 15-231 206-388 (758)
58 3pxg_A Negative regulator of g 99.4 1.7E-14 5.8E-19 132.2 0.6 161 15-232 200-365 (468)
59 1iqp_A RFCS; clamp loader, ext 99.4 2.5E-13 8.5E-18 117.7 7.5 160 17-234 47-207 (327)
60 2qby_B CDC6 homolog 3, cell di 99.4 1.7E-13 5.8E-18 121.5 5.2 173 15-233 44-239 (384)
61 1in4_A RUVB, holliday junction 99.4 3.6E-13 1.2E-17 118.1 6.9 161 15-233 50-217 (334)
62 2r44_A Uncharacterized protein 99.4 2.1E-14 7.1E-19 125.5 -1.3 150 16-211 46-200 (331)
63 1fnn_A CDC6P, cell division co 99.4 1.7E-12 5.7E-17 115.1 10.8 166 18-228 46-227 (389)
64 2chq_A Replication factor C sm 99.4 1.2E-13 4.1E-18 119.2 3.1 159 18-234 40-199 (319)
65 3pxi_A Negative regulator of g 99.4 5.3E-14 1.8E-18 136.0 0.7 161 15-232 200-365 (758)
66 1sxj_B Activator 1 37 kDa subu 99.4 4.9E-13 1.7E-17 115.6 5.5 159 18-234 44-204 (323)
67 1njg_A DNA polymerase III subu 99.3 7.8E-13 2.7E-17 108.8 5.9 164 16-234 45-223 (250)
68 2qby_A CDC6 homolog 1, cell di 99.3 1.8E-12 6.1E-17 114.4 7.2 176 15-233 44-239 (386)
69 1sxj_C Activator 1 40 kDa subu 99.3 7.6E-12 2.6E-16 109.7 8.3 158 19-234 49-207 (340)
70 1g8p_A Magnesium-chelatase 38 99.3 1.2E-12 4.3E-17 114.6 2.8 26 16-41 45-70 (350)
71 1qvr_A CLPB protein; coiled co 99.3 5.3E-12 1.8E-16 123.5 7.3 87 17-131 589-687 (854)
72 1a5t_A Delta prime, HOLB; zinc 99.3 1.2E-11 4.3E-16 108.3 8.7 164 15-235 23-201 (334)
73 3cmw_A Protein RECA, recombina 99.2 2.6E-11 9E-16 124.1 11.5 112 11-133 1077-1206(1706)
74 1ojl_A Transcriptional regulat 99.2 8.7E-12 3E-16 108.0 6.9 89 14-131 23-123 (304)
75 1sxj_E Activator 1 40 kDa subu 99.2 5E-12 1.7E-16 111.0 4.3 164 19-234 39-232 (354)
76 1jr3_A DNA polymerase III subu 99.2 5.9E-12 2E-16 111.1 4.8 165 16-235 38-217 (373)
77 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 1.1E-12 3.9E-17 120.6 -0.3 152 16-209 41-196 (500)
78 3n70_A Transport activator; si 99.2 1.9E-11 6.5E-16 94.3 5.7 69 15-104 23-91 (145)
79 2bjv_A PSP operon transcriptio 99.2 2.5E-11 8.7E-16 102.5 6.7 90 15-130 28-126 (265)
80 3co5_A Putative two-component 99.1 1.1E-11 3.8E-16 95.4 2.0 65 15-104 26-90 (143)
81 1w5s_A Origin recognition comp 99.1 7.4E-10 2.5E-14 98.8 11.6 182 15-229 49-250 (412)
82 2gno_A DNA polymerase III, gam 99.0 2.1E-10 7E-15 99.3 6.1 123 16-187 18-140 (305)
83 2w58_A DNAI, primosome compone 99.0 1.8E-10 6.1E-15 93.2 3.9 74 16-102 54-128 (202)
84 3f9v_A Minichromosome maintena 99.0 5.5E-12 1.9E-16 118.6 -7.7 27 16-42 327-353 (595)
85 3ec2_A DNA replication protein 98.9 1.1E-09 3.7E-14 87.0 5.2 76 14-101 36-112 (180)
86 2vhj_A Ntpase P4, P4; non- hyd 98.9 5.1E-09 1.7E-13 90.6 9.1 106 11-133 118-223 (331)
87 4akg_A Glutathione S-transfera 98.9 6.3E-10 2.1E-14 118.4 4.0 157 15-210 1266-1432(2695)
88 2qgz_A Helicase loader, putati 98.9 9.1E-10 3.1E-14 95.4 4.3 74 16-102 152-227 (308)
89 3cmu_A Protein RECA, recombina 98.8 1.2E-08 4E-13 106.0 10.9 112 11-133 1422-1551(2050)
90 3k1j_A LON protease, ATP-depen 98.7 1.7E-09 5.9E-14 101.9 1.2 26 16-41 60-85 (604)
91 2kjq_A DNAA-related protein; s 98.7 1.5E-08 5E-13 78.5 4.9 62 15-102 35-96 (149)
92 4akg_A Glutathione S-transfera 98.6 5.6E-08 1.9E-12 103.7 8.3 68 15-103 644-711 (2695)
93 2qen_A Walker-type ATPase; unk 98.5 3.8E-07 1.3E-11 79.1 9.9 24 17-40 32-55 (350)
94 3hr8_A Protein RECA; alpha and 98.4 1.5E-06 5.3E-11 76.4 10.6 116 11-133 56-185 (356)
95 2zr9_A Protein RECA, recombina 98.3 2.4E-06 8.4E-11 75.0 10.4 86 11-103 56-153 (349)
96 2cvh_A DNA repair and recombin 98.3 4.5E-06 1.5E-10 67.6 10.4 83 11-104 15-120 (220)
97 1tue_A Replication protein E1; 98.3 4.4E-07 1.5E-11 73.5 3.5 29 13-41 55-83 (212)
98 2fna_A Conserved hypothetical 98.3 2.6E-06 8.8E-11 73.9 8.6 35 17-60 31-65 (357)
99 3cmu_A Protein RECA, recombina 98.3 3.5E-06 1.2E-10 87.8 10.7 115 12-133 728-856 (2050)
100 2z43_A DNA repair and recombin 98.2 9E-06 3.1E-10 70.5 11.9 94 11-104 102-218 (324)
101 3vkg_A Dynein heavy chain, cyt 98.2 8.7E-07 3E-11 95.5 6.2 66 16-102 604-669 (3245)
102 2r2a_A Uncharacterized protein 98.2 4.7E-07 1.6E-11 73.3 2.9 139 16-189 5-156 (199)
103 1ye8_A Protein THEP1, hypothet 98.2 9.3E-06 3.2E-10 64.4 10.1 26 18-43 2-27 (178)
104 1qhx_A CPT, protein (chloramph 98.2 3.1E-06 1.1E-10 66.4 7.3 27 16-42 3-29 (178)
105 1u94_A RECA protein, recombina 98.2 1.1E-05 3.7E-10 71.1 10.5 86 11-103 58-155 (356)
106 1v5w_A DMC1, meiotic recombina 98.2 9.1E-06 3.1E-10 71.2 10.0 94 11-104 117-234 (343)
107 3dzd_A Transcriptional regulat 98.2 1.1E-05 3.8E-10 71.3 10.6 86 15-130 151-248 (368)
108 1n0w_A DNA repair protein RAD5 98.1 1.2E-05 4E-10 66.1 9.9 92 11-103 19-133 (243)
109 1xp8_A RECA protein, recombina 98.1 7E-06 2.4E-10 72.5 9.0 86 11-103 69-166 (366)
110 2w0m_A SSO2452; RECA, SSPF, un 98.1 7.6E-06 2.6E-10 66.6 8.7 31 11-41 18-48 (235)
111 1ny5_A Transcriptional regulat 98.1 1.7E-06 5.8E-11 77.1 4.8 87 15-130 159-257 (387)
112 3cmw_A Protein RECA, recombina 98.1 1.1E-05 3.7E-10 83.3 10.3 86 11-103 727-824 (1706)
113 3io5_A Recombination and repai 98.1 1.3E-05 4.6E-10 69.1 8.8 117 11-132 24-158 (333)
114 1u0j_A DNA replication protein 98.1 2.5E-06 8.4E-11 72.0 4.1 28 14-41 102-129 (267)
115 3trf_A Shikimate kinase, SK; a 98.0 4.4E-06 1.5E-10 66.0 4.9 27 16-42 5-31 (185)
116 3vaa_A Shikimate kinase, SK; s 98.0 4.4E-06 1.5E-10 67.1 4.7 28 15-42 24-51 (199)
117 4a74_A DNA repair and recombin 98.0 2.7E-05 9.3E-10 63.3 9.0 31 11-41 20-50 (231)
118 2ehv_A Hypothetical protein PH 98.0 6.5E-05 2.2E-09 61.8 11.4 29 11-39 25-53 (251)
119 2i1q_A DNA repair and recombin 98.0 2.5E-05 8.5E-10 67.5 8.7 94 11-104 93-219 (322)
120 1ly1_A Polynucleotide kinase; 98.0 1.5E-05 5.1E-10 62.3 6.7 23 16-38 2-24 (181)
121 3umf_A Adenylate kinase; rossm 97.9 1.1E-05 3.6E-10 66.2 5.7 41 13-64 26-66 (217)
122 2dr3_A UPF0273 protein PH0284; 97.9 9.7E-05 3.3E-09 60.6 11.7 31 11-41 18-48 (247)
123 1pzn_A RAD51, DNA repair and r 97.9 4.9E-05 1.7E-09 66.7 9.9 94 11-104 126-246 (349)
124 3lda_A DNA repair protein RAD5 97.9 7.9E-05 2.7E-09 66.5 11.2 93 11-104 173-288 (400)
125 1tev_A UMP-CMP kinase; ploop, 97.9 2.8E-05 9.4E-10 61.5 7.1 27 16-42 3-29 (196)
126 1kag_A SKI, shikimate kinase I 97.9 1.7E-05 5.8E-10 61.8 5.4 27 16-42 4-30 (173)
127 3vkg_A Dynein heavy chain, cyt 97.9 4.7E-06 1.6E-10 90.0 2.8 153 15-208 1303-1468(3245)
128 2rhm_A Putative kinase; P-loop 97.9 1.1E-05 3.7E-10 64.0 4.2 29 14-42 3-31 (193)
129 3a4m_A L-seryl-tRNA(SEC) kinas 97.8 3E-05 1E-09 65.0 7.1 40 16-61 4-43 (260)
130 2b8t_A Thymidine kinase; deoxy 97.8 1.3E-05 4.5E-10 65.9 4.7 79 16-101 12-101 (223)
131 1nks_A Adenylate kinase; therm 97.8 3.9E-05 1.3E-09 60.5 7.3 24 18-41 3-26 (194)
132 1jr3_D DNA polymerase III, del 97.8 4.9E-05 1.7E-09 66.1 8.6 166 14-236 16-182 (343)
133 2bwj_A Adenylate kinase 5; pho 97.8 1.3E-05 4.3E-10 63.9 4.3 28 15-42 11-38 (199)
134 3t61_A Gluconokinase; PSI-biol 97.8 1.4E-05 4.8E-10 64.2 4.6 28 15-42 17-44 (202)
135 1via_A Shikimate kinase; struc 97.8 1.3E-05 4.6E-10 62.8 4.2 25 18-42 6-30 (175)
136 2orw_A Thymidine kinase; TMTK, 97.8 9.7E-06 3.3E-10 64.6 3.1 26 16-41 3-28 (184)
137 1qf9_A UMP/CMP kinase, protein 97.8 2.3E-05 7.9E-10 61.9 5.3 28 15-42 5-32 (194)
138 2iyv_A Shikimate kinase, SK; t 97.8 1.2E-05 4.1E-10 63.5 3.6 27 16-42 2-28 (184)
139 1aky_A Adenylate kinase; ATP:A 97.8 2.2E-05 7.6E-10 63.9 5.2 28 15-42 3-30 (220)
140 1svm_A Large T antigen; AAA+ f 97.8 1.3E-05 4.4E-10 71.1 4.1 30 12-41 165-194 (377)
141 2p5t_B PEZT; postsegregational 97.8 4.9E-05 1.7E-09 63.4 7.3 39 14-61 30-68 (253)
142 2zts_A Putative uncharacterize 97.8 0.00016 5.6E-09 59.3 10.4 30 11-40 25-54 (251)
143 3iij_A Coilin-interacting nucl 97.8 1.5E-05 5.3E-10 62.7 3.9 27 16-42 11-37 (180)
144 3be4_A Adenylate kinase; malar 97.8 2.3E-05 8E-10 63.8 5.1 27 16-42 5-31 (217)
145 3lw7_A Adenylate kinase relate 97.8 3.7E-05 1.3E-09 59.5 6.0 25 17-42 2-26 (179)
146 1zd8_A GTP:AMP phosphotransfer 97.8 1.8E-05 6.1E-10 64.8 4.4 29 14-42 5-33 (227)
147 1nlf_A Regulatory protein REPA 97.8 8E-05 2.7E-09 62.9 8.4 30 12-41 26-55 (279)
148 3tlx_A Adenylate kinase 2; str 97.8 3.2E-05 1.1E-09 64.2 5.7 39 15-64 28-66 (243)
149 1ak2_A Adenylate kinase isoenz 97.7 2.9E-05 1E-09 63.9 5.4 27 16-42 16-42 (233)
150 3cm0_A Adenylate kinase; ATP-b 97.7 2.4E-05 8.1E-10 61.7 4.6 27 16-42 4-30 (186)
151 1y63_A LMAJ004144AAA protein; 97.7 1.8E-05 6.2E-10 62.7 3.8 27 16-42 10-37 (184)
152 2cdn_A Adenylate kinase; phosp 97.7 2E-05 7E-10 63.1 4.1 28 15-42 19-46 (201)
153 3sr0_A Adenylate kinase; phosp 97.7 3.4E-05 1.2E-09 62.7 5.3 36 18-64 2-37 (206)
154 3kb2_A SPBC2 prophage-derived 97.7 2.2E-05 7.6E-10 60.9 4.1 25 18-42 3-27 (173)
155 1m7g_A Adenylylsulfate kinase; 97.7 8.9E-05 3E-09 59.9 7.5 43 14-61 23-65 (211)
156 2eyu_A Twitching motility prot 97.7 8.1E-05 2.8E-09 62.6 7.4 30 13-42 22-51 (261)
157 4eun_A Thermoresistant glucoki 97.7 3.6E-05 1.2E-09 61.8 5.0 28 15-42 28-55 (200)
158 2yvu_A Probable adenylyl-sulfa 97.7 0.00012 4.1E-09 57.8 7.9 28 15-42 12-39 (186)
159 1kht_A Adenylate kinase; phosp 97.7 2.8E-05 9.6E-10 61.3 4.1 26 16-41 3-28 (192)
160 1gvn_B Zeta; postsegregational 97.7 2E-05 7E-10 67.2 3.5 38 15-61 32-69 (287)
161 1zuh_A Shikimate kinase; alpha 97.7 2.7E-05 9.3E-10 60.5 3.9 26 17-42 8-33 (168)
162 2c95_A Adenylate kinase 1; tra 97.7 2.7E-05 9.1E-10 61.8 3.8 28 15-42 8-35 (196)
163 1knq_A Gluconate kinase; ALFA/ 97.7 4.7E-05 1.6E-09 59.5 5.0 27 16-42 8-34 (175)
164 4a1f_A DNAB helicase, replicat 97.7 0.00021 7.3E-09 62.3 9.6 32 11-42 41-72 (338)
165 3crm_A TRNA delta(2)-isopenten 97.7 0.00017 5.9E-09 62.4 8.9 28 15-42 4-31 (323)
166 1zp6_A Hypothetical protein AT 97.6 2.2E-05 7.5E-10 62.2 2.9 27 14-40 7-33 (191)
167 1e6c_A Shikimate kinase; phosp 97.6 6.7E-05 2.3E-09 58.3 5.5 26 17-42 3-28 (173)
168 1zak_A Adenylate kinase; ATP:A 97.6 3.4E-05 1.2E-09 62.9 3.8 28 15-42 4-31 (222)
169 2r8r_A Sensor protein; KDPD, P 97.6 8.5E-05 2.9E-09 61.0 6.1 26 17-42 7-32 (228)
170 2ze6_A Isopentenyl transferase 97.6 3.7E-05 1.3E-09 64.3 4.0 25 18-42 3-27 (253)
171 3fb4_A Adenylate kinase; psych 97.6 6E-05 2.1E-09 60.9 4.9 25 18-42 2-26 (216)
172 1ukz_A Uridylate kinase; trans 97.6 3E-05 1E-09 62.1 3.0 27 16-42 15-41 (203)
173 2bbw_A Adenylate kinase 4, AK4 97.6 4.2E-05 1.4E-09 63.4 3.9 27 16-42 27-53 (246)
174 2axn_A 6-phosphofructo-2-kinas 97.6 0.00024 8E-09 65.6 8.9 29 15-43 34-62 (520)
175 2pt5_A Shikimate kinase, SK; a 97.5 5.2E-05 1.8E-09 58.7 3.8 25 18-42 2-26 (168)
176 3jvv_A Twitching mobility prot 97.5 8.5E-05 2.9E-09 65.3 5.6 28 15-42 122-149 (356)
177 2plr_A DTMP kinase, probable t 97.5 5.3E-05 1.8E-09 60.8 4.0 27 16-42 4-30 (213)
178 3dl0_A Adenylate kinase; phosp 97.5 5.6E-05 1.9E-09 61.2 4.1 25 18-42 2-26 (216)
179 2vli_A Antibiotic resistance p 97.5 3E-05 1E-09 60.9 2.4 27 16-42 5-31 (183)
180 1sky_E F1-ATPase, F1-ATP synth 97.5 0.00031 1E-08 63.7 9.2 27 16-42 151-177 (473)
181 2r6a_A DNAB helicase, replicat 97.5 0.00028 9.7E-09 63.9 8.8 32 11-42 198-229 (454)
182 2if2_A Dephospho-COA kinase; a 97.5 9.3E-05 3.2E-09 59.2 5.1 24 18-42 3-26 (204)
183 3uie_A Adenylyl-sulfate kinase 97.5 6.9E-05 2.4E-09 60.1 4.2 28 14-41 23-50 (200)
184 2wwf_A Thymidilate kinase, put 97.5 7.5E-05 2.6E-09 60.0 4.2 29 15-43 9-37 (212)
185 1nn5_A Similar to deoxythymidy 97.5 8.2E-05 2.8E-09 59.8 4.3 27 16-42 9-35 (215)
186 3e1s_A Exodeoxyribonuclease V, 97.5 0.00024 8.3E-09 66.3 7.9 27 16-42 204-230 (574)
187 1vma_A Cell division protein F 97.5 0.0003 1E-08 60.5 7.9 29 14-42 102-130 (306)
188 4gp7_A Metallophosphoesterase; 97.5 0.0002 6.9E-09 56.0 6.3 21 15-35 8-28 (171)
189 3a8t_A Adenylate isopentenyltr 97.5 0.00027 9.3E-09 61.5 7.6 26 17-42 41-66 (339)
190 2fz4_A DNA repair protein RAD2 97.5 0.00013 4.5E-09 60.3 5.3 25 17-41 109-133 (237)
191 2q6t_A DNAB replication FORK h 97.4 0.00041 1.4E-08 62.7 8.8 32 11-42 195-226 (444)
192 2ewv_A Twitching motility prot 97.4 0.00011 3.8E-09 64.9 5.0 29 14-42 134-162 (372)
193 3zvl_A Bifunctional polynucleo 97.4 9.5E-05 3.3E-09 66.3 4.5 28 15-42 257-284 (416)
194 1ltq_A Polynucleotide kinase; 97.4 0.00022 7.7E-09 60.6 6.6 25 16-40 2-26 (301)
195 1jjv_A Dephospho-COA kinase; P 97.4 8.5E-05 2.9E-09 59.6 3.8 25 17-42 3-27 (206)
196 3nwj_A ATSK2; P loop, shikimat 97.4 0.00011 3.9E-09 61.3 4.6 27 16-42 48-74 (250)
197 3dm5_A SRP54, signal recogniti 97.4 0.00041 1.4E-08 62.6 8.3 28 15-42 99-126 (443)
198 2ga8_A Hypothetical 39.9 kDa p 97.4 5.7E-05 2E-09 66.2 2.5 28 17-44 25-52 (359)
199 2jaq_A Deoxyguanosine kinase; 97.4 0.0001 3.5E-09 58.7 3.8 25 18-42 2-26 (205)
200 3bh0_A DNAB-like replicative h 97.4 0.00077 2.6E-08 58.1 9.5 42 11-58 63-104 (315)
201 2qor_A Guanylate kinase; phosp 97.4 0.0001 3.5E-09 59.2 3.7 28 14-41 10-37 (204)
202 2pez_A Bifunctional 3'-phospho 97.3 0.0002 6.7E-09 56.2 4.9 38 16-59 5-42 (179)
203 3f8t_A Predicted ATPase involv 97.3 1E-05 3.6E-10 73.3 -2.8 132 17-189 240-384 (506)
204 1z6t_A APAF-1, apoptotic prote 97.3 0.00022 7.5E-09 66.4 6.0 25 16-40 147-171 (591)
205 1e4v_A Adenylate kinase; trans 97.3 0.00012 4.2E-09 59.2 3.7 25 18-42 2-26 (214)
206 2v54_A DTMP kinase, thymidylat 97.3 0.00017 6E-09 57.4 4.6 25 16-40 4-28 (204)
207 1w4r_A Thymidine kinase; type 97.3 0.00024 8.2E-09 57.0 5.3 37 16-59 20-57 (195)
208 2grj_A Dephospho-COA kinase; T 97.3 0.00017 5.9E-09 57.7 4.5 26 17-42 13-38 (192)
209 1uj2_A Uridine-cytidine kinase 97.3 0.00026 8.9E-09 58.9 5.7 48 15-63 21-68 (252)
210 3foz_A TRNA delta(2)-isopenten 97.3 0.00016 5.3E-09 62.2 4.3 28 15-42 9-36 (316)
211 2pbr_A DTMP kinase, thymidylat 97.3 0.00022 7.4E-09 56.3 4.8 24 18-41 2-25 (195)
212 1g5t_A COB(I)alamin adenosyltr 97.3 0.00062 2.1E-08 54.6 7.4 83 16-104 28-135 (196)
213 1cke_A CK, MSSA, protein (cyti 97.3 0.00017 5.7E-09 58.6 4.0 27 16-42 5-31 (227)
214 3r20_A Cytidylate kinase; stru 97.3 0.00022 7.4E-09 59.0 4.7 27 16-42 9-35 (233)
215 2j41_A Guanylate kinase; GMP, 97.3 0.00017 5.7E-09 57.6 4.0 26 15-40 5-30 (207)
216 2xb4_A Adenylate kinase; ATP-b 97.3 0.00016 5.6E-09 59.0 3.9 25 18-42 2-26 (223)
217 3ice_A Transcription terminati 97.3 0.0015 5.1E-08 57.9 10.0 87 16-107 174-279 (422)
218 2pt7_A CAG-ALFA; ATPase, prote 97.3 0.0001 3.5E-09 64.1 2.5 75 14-100 169-251 (330)
219 1vht_A Dephospho-COA kinase; s 97.3 0.00027 9.1E-09 57.2 4.8 26 16-42 4-29 (218)
220 1uf9_A TT1252 protein; P-loop, 97.2 0.00013 4.6E-09 58.0 2.9 27 15-42 7-33 (203)
221 3tau_A Guanylate kinase, GMP k 97.2 0.00023 7.7E-09 57.5 3.9 27 15-41 7-33 (208)
222 1kgd_A CASK, peripheral plasma 97.2 0.00026 8.8E-09 55.8 4.1 25 16-40 5-29 (180)
223 3ake_A Cytidylate kinase; CMP 97.2 0.00028 9.7E-09 56.3 4.2 26 17-42 3-28 (208)
224 2z0h_A DTMP kinase, thymidylat 97.2 0.00023 7.8E-09 56.4 3.5 23 18-40 2-24 (197)
225 1x6v_B Bifunctional 3'-phospho 97.2 0.0007 2.4E-08 63.7 7.3 39 16-60 52-90 (630)
226 4e22_A Cytidylate kinase; P-lo 97.1 0.00026 8.8E-09 59.0 3.7 27 16-42 27-53 (252)
227 1bif_A 6-phosphofructo-2-kinas 97.1 0.0013 4.6E-08 59.7 8.7 29 15-43 38-66 (469)
228 1q57_A DNA primase/helicase; d 97.1 0.0014 4.7E-08 60.1 8.6 44 11-59 237-280 (503)
229 3tr0_A Guanylate kinase, GMP k 97.1 0.00036 1.2E-08 55.6 4.1 25 16-40 7-31 (205)
230 2bdt_A BH3686; alpha-beta prot 97.1 0.00025 8.7E-09 56.0 3.2 24 17-40 3-26 (189)
231 3exa_A TRNA delta(2)-isopenten 97.1 0.00032 1.1E-08 60.4 4.0 27 16-42 3-29 (322)
232 1lvg_A Guanylate kinase, GMP k 97.1 0.00033 1.1E-08 56.1 3.7 26 15-40 3-28 (198)
233 2qt1_A Nicotinamide riboside k 97.1 0.00032 1.1E-08 56.3 3.6 26 15-40 20-45 (207)
234 2f6r_A COA synthase, bifunctio 97.1 0.00044 1.5E-08 58.6 4.5 26 16-42 75-100 (281)
235 1ex7_A Guanylate kinase; subst 97.1 0.00036 1.2E-08 55.6 3.7 25 17-41 2-26 (186)
236 3a00_A Guanylate kinase, GMP k 97.1 0.00033 1.1E-08 55.4 3.3 26 16-41 1-26 (186)
237 3eph_A TRNA isopentenyltransfe 97.1 0.00046 1.6E-08 61.4 4.5 27 16-42 2-28 (409)
238 3c8u_A Fructokinase; YP_612366 97.0 0.00041 1.4E-08 55.9 3.7 27 15-41 21-47 (208)
239 3asz_A Uridine kinase; cytidin 97.0 0.00048 1.6E-08 55.3 4.1 26 16-41 6-31 (211)
240 3d3q_A TRNA delta(2)-isopenten 97.0 0.00063 2.2E-08 59.3 4.5 27 16-42 7-33 (340)
241 4eaq_A DTMP kinase, thymidylat 97.0 0.00061 2.1E-08 56.0 4.2 26 16-41 26-51 (229)
242 2h92_A Cytidylate kinase; ross 97.0 0.00062 2.1E-08 55.0 4.2 27 16-42 3-29 (219)
243 1q3t_A Cytidylate kinase; nucl 96.9 0.00062 2.1E-08 55.9 4.2 29 14-42 14-42 (236)
244 3ney_A 55 kDa erythrocyte memb 96.9 0.00062 2.1E-08 54.7 4.0 27 15-41 18-44 (197)
245 1htw_A HI0065; nucleotide-bind 96.9 0.00063 2.1E-08 52.7 3.9 26 15-40 32-57 (158)
246 2xxa_A Signal recognition part 96.9 0.0023 7.8E-08 57.6 8.1 40 15-59 99-138 (433)
247 1gtv_A TMK, thymidylate kinase 96.9 0.00032 1.1E-08 56.3 2.1 25 18-42 2-26 (214)
248 3kw6_A 26S protease regulatory 96.9 0.00045 1.5E-08 46.8 2.5 42 184-248 1-42 (78)
249 2oap_1 GSPE-2, type II secreti 96.9 0.00035 1.2E-08 64.3 2.6 28 14-41 258-285 (511)
250 1znw_A Guanylate kinase, GMP k 96.9 0.00061 2.1E-08 54.8 3.7 26 15-40 19-44 (207)
251 2gks_A Bifunctional SAT/APS ki 96.9 0.0023 7.9E-08 59.3 8.1 40 16-61 372-411 (546)
252 1z6g_A Guanylate kinase; struc 96.9 0.0006 2.1E-08 55.5 3.7 27 14-40 21-47 (218)
253 1cr0_A DNA primase/helicase; R 96.9 0.00076 2.6E-08 57.2 4.4 32 11-42 30-61 (296)
254 1m8p_A Sulfate adenylyltransfe 96.8 0.0023 8E-08 59.6 7.7 40 16-61 396-436 (573)
255 2v9p_A Replication protein E1; 96.8 0.00083 2.8E-08 57.7 4.3 28 13-40 123-150 (305)
256 1xx6_A Thymidine kinase; NESG, 96.8 0.00086 2.9E-08 53.6 4.1 26 16-41 8-33 (191)
257 2jeo_A Uridine-cytidine kinase 96.8 0.00085 2.9E-08 55.4 4.1 27 16-42 25-51 (245)
258 1rz3_A Hypothetical protein rb 96.8 0.00093 3.2E-08 53.5 4.1 27 15-41 21-47 (201)
259 2j37_W Signal recognition part 96.8 0.0031 1.1E-07 57.8 7.9 28 15-42 100-127 (504)
260 2qmh_A HPR kinase/phosphorylas 96.8 0.00049 1.7E-08 55.3 2.1 27 15-41 33-59 (205)
261 1s96_A Guanylate kinase, GMP k 96.7 0.0011 3.7E-08 54.1 4.0 28 14-41 14-41 (219)
262 2a5y_B CED-4; apoptosis; HET: 96.7 0.003 1E-07 58.4 7.4 23 16-38 152-174 (549)
263 3fdi_A Uncharacterized protein 96.7 0.0012 4.1E-08 53.1 4.0 26 17-42 7-32 (201)
264 3lnc_A Guanylate kinase, GMP k 96.7 0.00062 2.1E-08 55.6 2.2 26 15-40 26-52 (231)
265 3upu_A ATP-dependent DNA helic 96.7 0.0012 4E-08 59.9 4.2 26 17-42 46-71 (459)
266 3b6e_A Interferon-induced heli 96.6 0.0029 1E-07 50.4 6.0 25 16-40 48-72 (216)
267 3gmt_A Adenylate kinase; ssgci 96.6 0.00098 3.4E-08 54.8 3.1 26 17-42 9-34 (230)
268 3b9q_A Chloroplast SRP recepto 96.6 0.0014 4.7E-08 56.2 4.2 28 14-41 98-125 (302)
269 4b3f_X DNA-binding protein smu 96.6 0.001 3.5E-08 62.9 3.6 24 17-40 206-229 (646)
270 2i3b_A HCR-ntpase, human cance 96.6 0.0013 4.5E-08 52.4 3.6 24 18-41 3-26 (189)
271 1odf_A YGR205W, hypothetical 3 96.6 0.0015 5.2E-08 55.6 4.2 28 15-42 30-57 (290)
272 1rj9_A FTSY, signal recognitio 96.6 0.0016 5.4E-08 55.9 4.3 28 15-42 101-128 (304)
273 3kl4_A SRP54, signal recogniti 96.6 0.0021 7E-08 57.9 5.2 28 15-42 96-123 (433)
274 3sfz_A APAF-1, apoptotic pepti 96.6 0.0015 5.1E-08 65.6 4.6 25 16-40 147-171 (1249)
275 1j8m_F SRP54, signal recogniti 96.6 0.0045 1.5E-07 52.9 7.0 27 16-42 98-124 (297)
276 3aez_A Pantothenate kinase; tr 96.5 0.0018 6E-08 55.8 4.2 28 14-41 88-115 (312)
277 3thx_A DNA mismatch repair pro 96.5 0.01 3.5E-07 58.4 9.9 24 16-39 662-685 (934)
278 2px0_A Flagellar biosynthesis 96.5 0.0019 6.5E-08 55.2 4.2 27 15-41 104-130 (296)
279 3e70_C DPA, signal recognition 96.5 0.0018 6.3E-08 56.1 4.1 28 15-42 128-155 (328)
280 1a7j_A Phosphoribulokinase; tr 96.5 0.0015 5.1E-08 55.6 3.4 26 16-41 5-30 (290)
281 1np6_A Molybdopterin-guanine d 96.5 0.0022 7.6E-08 50.4 4.2 26 16-41 6-31 (174)
282 1xjc_A MOBB protein homolog; s 96.5 0.0022 7.4E-08 50.2 4.1 27 16-42 4-30 (169)
283 2og2_A Putative signal recogni 96.5 0.0019 6.6E-08 56.7 4.2 28 14-41 155-182 (359)
284 3bgw_A DNAB-like replicative h 96.5 0.0037 1.3E-07 56.5 6.0 43 11-59 192-234 (444)
285 2ocp_A DGK, deoxyguanosine kin 96.5 0.0016 5.4E-08 53.6 3.4 26 16-41 2-27 (241)
286 1zu4_A FTSY; GTPase, signal re 96.4 0.0041 1.4E-07 53.7 5.9 29 14-42 103-131 (320)
287 3thx_B DNA mismatch repair pro 96.4 0.012 4.1E-07 57.7 9.5 24 16-39 673-696 (918)
288 3tqc_A Pantothenate kinase; bi 96.4 0.0024 8.1E-08 55.2 4.1 26 16-41 92-117 (321)
289 1vt4_I APAF-1 related killer D 96.4 0.0085 2.9E-07 59.5 8.3 24 16-39 150-173 (1221)
290 2gxq_A Heat resistant RNA depe 96.4 0.0057 2E-07 48.5 6.0 24 16-39 38-62 (207)
291 3kta_A Chromosome segregation 96.4 0.0024 8.1E-08 49.9 3.6 26 16-41 26-51 (182)
292 4edh_A DTMP kinase, thymidylat 96.3 0.0029 9.8E-08 51.4 4.1 27 16-42 6-32 (213)
293 3cr8_A Sulfate adenylyltranfer 96.3 0.0019 6.4E-08 60.0 3.3 27 15-41 368-394 (552)
294 2v3c_C SRP54, signal recogniti 96.3 0.0024 8.2E-08 57.5 3.9 28 15-42 98-125 (432)
295 3hdt_A Putative kinase; struct 96.3 0.003 1E-07 51.6 4.2 27 16-42 14-40 (223)
296 3tqf_A HPR(Ser) kinase; transf 96.3 0.0024 8.1E-08 50.2 3.3 25 15-39 15-39 (181)
297 1g8f_A Sulfate adenylyltransfe 96.3 0.0022 7.4E-08 58.9 3.5 27 16-42 395-421 (511)
298 2gk6_A Regulator of nonsense t 96.3 0.0025 8.7E-08 60.0 4.1 25 17-41 196-220 (624)
299 3tif_A Uncharacterized ABC tra 96.3 0.0022 7.4E-08 52.9 3.2 27 14-40 29-55 (235)
300 2pcj_A ABC transporter, lipopr 96.3 0.0019 6.6E-08 52.8 2.8 26 15-40 29-54 (224)
301 2cbz_A Multidrug resistance-as 96.3 0.0022 7.5E-08 52.9 3.2 27 14-40 29-55 (237)
302 3lv8_A DTMP kinase, thymidylat 96.2 0.0035 1.2E-07 51.8 4.2 27 16-42 27-53 (236)
303 1sq5_A Pantothenate kinase; P- 96.2 0.0031 1.1E-07 54.0 4.0 27 15-41 79-105 (308)
304 3ld9_A DTMP kinase, thymidylat 96.2 0.0036 1.2E-07 51.2 4.2 27 16-42 21-47 (223)
305 3v9p_A DTMP kinase, thymidylat 96.2 0.0025 8.6E-08 52.3 3.3 27 16-42 25-51 (227)
306 2krk_A 26S protease regulatory 96.2 0.0018 6.3E-08 44.7 2.1 38 198-248 13-50 (86)
307 1wb9_A DNA mismatch repair pro 96.2 0.038 1.3E-06 53.4 11.9 25 16-40 607-631 (800)
308 2onk_A Molybdate/tungstate ABC 96.2 0.0029 9.9E-08 52.3 3.6 26 14-40 23-48 (240)
309 2yhs_A FTSY, cell division pro 96.2 0.0033 1.1E-07 57.4 4.2 29 14-42 291-319 (503)
310 1p5z_B DCK, deoxycytidine kina 96.2 0.001 3.5E-08 55.5 0.7 26 15-40 23-48 (263)
311 3tmk_A Thymidylate kinase; pho 96.2 0.0037 1.3E-07 50.9 4.0 27 16-42 5-31 (216)
312 3l0o_A Transcription terminati 96.2 0.024 8.3E-07 50.2 9.4 86 17-107 176-280 (427)
313 1b0u_A Histidine permease; ABC 96.1 0.0028 9.4E-08 53.1 3.1 26 15-40 31-56 (262)
314 1w36_D RECD, exodeoxyribonucle 96.1 0.0032 1.1E-07 59.1 3.8 26 16-41 164-189 (608)
315 1c9k_A COBU, adenosylcobinamid 96.1 0.0028 9.5E-08 50.1 2.9 32 19-60 2-33 (180)
316 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0033 1.1E-07 55.1 3.6 25 16-40 30-54 (359)
317 2j9r_A Thymidine kinase; TK1, 96.1 0.0042 1.5E-07 50.4 3.9 24 18-41 30-53 (214)
318 1sgw_A Putative ABC transporte 96.1 0.0026 9E-08 51.7 2.7 26 15-40 34-59 (214)
319 1nrj_B SR-beta, signal recogni 96.1 0.0042 1.4E-07 49.7 4.0 25 16-40 12-36 (218)
320 1mv5_A LMRA, multidrug resista 96.1 0.0028 9.6E-08 52.4 3.0 27 14-40 26-52 (243)
321 2zu0_C Probable ATP-dependent 96.1 0.0037 1.3E-07 52.5 3.6 26 14-39 44-69 (267)
322 1g6h_A High-affinity branched- 96.1 0.0029 9.8E-08 52.8 2.9 26 15-40 32-57 (257)
323 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0035 1.2E-07 52.1 3.4 25 15-39 28-52 (250)
324 2pze_A Cystic fibrosis transme 96.1 0.003 1E-07 51.8 2.9 27 15-41 33-59 (229)
325 2olj_A Amino acid ABC transpor 96.1 0.0032 1.1E-07 52.8 3.1 26 15-40 49-74 (263)
326 2ff7_A Alpha-hemolysin translo 96.1 0.003 1E-07 52.4 2.9 26 15-40 34-59 (247)
327 2dyk_A GTP-binding protein; GT 96.1 0.0039 1.3E-07 46.9 3.4 23 17-39 2-24 (161)
328 2ghi_A Transport protein; mult 96.1 0.0033 1.1E-07 52.6 3.2 27 14-40 44-70 (260)
329 1p9r_A General secretion pathw 96.1 0.0043 1.5E-07 55.6 4.1 25 17-41 168-192 (418)
330 3sop_A Neuronal-specific septi 96.0 0.0041 1.4E-07 52.4 3.7 24 18-41 4-27 (270)
331 3b85_A Phosphate starvation-in 96.0 0.0021 7.2E-08 52.0 1.8 26 14-39 20-45 (208)
332 2ixe_A Antigen peptide transpo 96.0 0.0034 1.2E-07 52.9 3.2 27 14-40 43-69 (271)
333 1ji0_A ABC transporter; ATP bi 96.0 0.0032 1.1E-07 52.0 2.9 26 15-40 31-56 (240)
334 2gza_A Type IV secretion syste 96.0 0.0026 9E-08 55.8 2.5 28 14-41 173-200 (361)
335 2ged_A SR-beta, signal recogni 96.0 0.0051 1.7E-07 48.1 3.9 26 14-39 46-71 (193)
336 2it1_A 362AA long hypothetical 96.0 0.0041 1.4E-07 54.7 3.6 26 15-40 28-53 (362)
337 2yyz_A Sugar ABC transporter, 96.0 0.0041 1.4E-07 54.5 3.7 26 15-40 28-53 (359)
338 1z47_A CYSA, putative ABC-tran 96.0 0.0039 1.3E-07 54.7 3.4 26 15-40 40-65 (355)
339 3gfo_A Cobalt import ATP-bindi 96.0 0.0033 1.1E-07 53.1 2.9 26 15-40 33-58 (275)
340 1oix_A RAS-related protein RAB 96.0 0.004 1.4E-07 49.1 3.2 24 17-40 30-53 (191)
341 2f9l_A RAB11B, member RAS onco 96.0 0.0042 1.4E-07 49.1 3.3 24 16-39 5-28 (199)
342 2f1r_A Molybdopterin-guanine d 96.0 0.0029 9.8E-08 49.6 2.3 26 17-42 3-28 (171)
343 2qi9_C Vitamin B12 import ATP- 96.0 0.0034 1.2E-07 52.2 2.9 26 15-40 25-50 (249)
344 1vpl_A ABC transporter, ATP-bi 96.0 0.0038 1.3E-07 52.2 3.1 26 15-40 40-65 (256)
345 2yz2_A Putative ABC transporte 96.0 0.0038 1.3E-07 52.4 3.2 26 15-40 32-57 (266)
346 3rlf_A Maltose/maltodextrin im 96.0 0.0044 1.5E-07 54.8 3.6 26 16-41 29-54 (381)
347 1v43_A Sugar-binding transport 96.0 0.0044 1.5E-07 54.6 3.6 26 15-40 36-61 (372)
348 2wjy_A Regulator of nonsense t 95.9 0.0046 1.6E-07 59.9 4.0 25 17-41 372-396 (800)
349 4tmk_A Protein (thymidylate ki 95.9 0.0059 2E-07 49.5 4.1 27 16-42 3-29 (213)
350 2iut_A DNA translocase FTSK; n 95.9 0.041 1.4E-06 51.0 10.1 43 16-60 214-256 (574)
351 2lkc_A Translation initiation 95.9 0.0053 1.8E-07 47.1 3.6 25 14-38 6-30 (178)
352 4i1u_A Dephospho-COA kinase; s 95.9 0.0059 2E-07 49.5 4.0 25 17-42 10-34 (210)
353 1lw7_A Transcriptional regulat 95.9 0.0044 1.5E-07 54.3 3.5 26 16-41 170-195 (365)
354 4g1u_C Hemin import ATP-bindin 95.9 0.0038 1.3E-07 52.5 2.9 26 15-40 36-61 (266)
355 2ihy_A ABC transporter, ATP-bi 95.9 0.0038 1.3E-07 52.8 2.9 26 15-40 46-71 (279)
356 2nq2_C Hypothetical ABC transp 95.9 0.0038 1.3E-07 52.1 2.8 26 15-40 30-55 (253)
357 1g29_1 MALK, maltose transport 95.9 0.0045 1.5E-07 54.6 3.4 26 15-40 28-53 (372)
358 3d31_A Sulfate/molybdate ABC t 95.9 0.0037 1.3E-07 54.6 2.8 26 15-40 25-50 (348)
359 1tf7_A KAIC; homohexamer, hexa 95.9 0.0053 1.8E-07 56.6 4.0 31 11-41 276-306 (525)
360 1tf7_A KAIC; homohexamer, hexa 95.9 0.0054 1.8E-07 56.5 4.0 29 12-40 35-65 (525)
361 1upt_A ARL1, ADP-ribosylation 95.8 0.0075 2.6E-07 45.8 4.0 25 15-39 6-30 (171)
362 2wsm_A Hydrogenase expression/ 95.8 0.0066 2.3E-07 48.7 3.8 26 16-41 30-55 (221)
363 2fwr_A DNA repair protein RAD2 95.8 0.013 4.6E-07 52.7 6.2 25 17-41 109-133 (472)
364 1z2a_A RAS-related protein RAB 95.8 0.0067 2.3E-07 45.9 3.5 24 16-39 5-28 (168)
365 2ce2_X GTPase HRAS; signaling 95.7 0.0067 2.3E-07 45.6 3.4 23 17-39 4-26 (166)
366 1kao_A RAP2A; GTP-binding prot 95.7 0.0069 2.4E-07 45.6 3.5 23 17-39 4-26 (167)
367 3gd7_A Fusion complex of cysti 95.7 0.0061 2.1E-07 54.1 3.6 27 14-40 45-71 (390)
368 1u8z_A RAS-related protein RAL 95.7 0.0061 2.1E-07 46.0 3.2 24 16-39 4-27 (168)
369 1oxx_K GLCV, glucose, ABC tran 95.7 0.0038 1.3E-07 54.7 2.1 26 15-40 30-55 (353)
370 2wji_A Ferrous iron transport 95.7 0.0061 2.1E-07 46.6 3.2 23 17-39 4-26 (165)
371 1ls1_A Signal recognition part 95.7 0.013 4.6E-07 49.8 5.6 28 15-42 97-124 (295)
372 2xzl_A ATP-dependent helicase 95.7 0.007 2.4E-07 58.7 4.1 24 17-40 376-399 (802)
373 2zej_A Dardarin, leucine-rich 95.7 0.0052 1.8E-07 47.9 2.6 22 17-38 3-24 (184)
374 1ek0_A Protein (GTP-binding pr 95.7 0.0058 2E-07 46.3 2.9 23 17-39 4-26 (170)
375 2bbs_A Cystic fibrosis transme 95.6 0.0059 2E-07 51.9 3.1 26 15-40 63-88 (290)
376 2nzj_A GTP-binding protein REM 95.6 0.0065 2.2E-07 46.4 3.1 24 16-39 4-27 (175)
377 2hf9_A Probable hydrogenase ni 95.6 0.0089 3E-07 48.1 4.0 26 16-41 38-63 (226)
378 2vp4_A Deoxynucleoside kinase; 95.6 0.0047 1.6E-07 50.4 2.3 27 13-39 17-43 (230)
379 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0093 3.2E-07 45.4 3.8 26 16-41 23-48 (149)
380 2pjz_A Hypothetical protein ST 95.6 0.0062 2.1E-07 51.0 3.0 25 16-40 30-54 (263)
381 1ky3_A GTP-binding protein YPT 95.6 0.0072 2.4E-07 46.4 3.1 24 16-39 8-31 (182)
382 1z0j_A RAB-22, RAS-related pro 95.6 0.0083 2.8E-07 45.5 3.5 24 16-39 6-29 (170)
383 2qm8_A GTPase/ATPase; G protei 95.6 0.0092 3.1E-07 51.8 4.1 26 16-41 55-80 (337)
384 2o8b_B DNA mismatch repair pro 95.6 0.062 2.1E-06 53.4 10.5 22 16-37 789-810 (1022)
385 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.0084 2.9E-07 45.9 3.5 24 16-39 7-30 (177)
386 1g16_A RAS-related protein SEC 95.5 0.0075 2.6E-07 45.7 3.1 24 16-39 3-26 (170)
387 1z08_A RAS-related protein RAB 95.5 0.0071 2.4E-07 45.9 3.0 24 16-39 6-29 (170)
388 2wjg_A FEOB, ferrous iron tran 95.5 0.0071 2.4E-07 46.9 3.0 24 16-39 7-30 (188)
389 2orv_A Thymidine kinase; TP4A 95.5 0.022 7.5E-07 46.7 5.9 25 17-41 20-44 (234)
390 1r2q_A RAS-related protein RAB 95.5 0.0095 3.3E-07 45.0 3.5 24 16-39 6-29 (170)
391 2ffh_A Protein (FFH); SRP54, s 95.5 0.016 5.6E-07 51.9 5.5 28 15-42 97-124 (425)
392 2gj8_A MNME, tRNA modification 95.5 0.0089 3E-07 46.1 3.3 24 16-39 4-27 (172)
393 2g6b_A RAS-related protein RAB 95.5 0.0087 3E-07 45.9 3.2 25 15-39 9-33 (180)
394 3p32_A Probable GTPase RV1496/ 95.5 0.01 3.5E-07 51.8 4.0 26 16-41 79-104 (355)
395 1svi_A GTP-binding protein YSX 95.5 0.0089 3E-07 46.7 3.3 24 16-39 23-46 (195)
396 1c1y_A RAS-related protein RAP 95.5 0.01 3.4E-07 44.9 3.5 23 17-39 4-26 (167)
397 3q85_A GTP-binding protein REM 95.4 0.0088 3E-07 45.4 3.2 21 18-38 4-24 (169)
398 1r8s_A ADP-ribosylation factor 95.4 0.01 3.5E-07 44.8 3.5 22 18-39 2-23 (164)
399 2erx_A GTP-binding protein DI- 95.4 0.0084 2.9E-07 45.5 3.0 22 17-38 4-25 (172)
400 3nh6_A ATP-binding cassette SU 95.4 0.0053 1.8E-07 52.7 2.0 27 14-40 78-104 (306)
401 3bc1_A RAS-related protein RAB 95.4 0.01 3.5E-07 46.0 3.5 24 16-39 11-34 (195)
402 1pui_A ENGB, probable GTP-bind 95.4 0.0042 1.4E-07 49.4 1.2 25 16-40 26-50 (210)
403 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0099 3.4E-07 53.9 3.8 27 15-41 137-163 (460)
404 2fn4_A P23, RAS-related protei 95.4 0.0092 3.1E-07 45.7 3.2 24 16-39 9-32 (181)
405 3clv_A RAB5 protein, putative; 95.4 0.011 3.8E-07 46.0 3.7 24 16-39 7-30 (208)
406 1m2o_B GTP-binding protein SAR 95.4 0.01 3.6E-07 46.5 3.5 23 16-38 23-45 (190)
407 4dsu_A GTPase KRAS, isoform 2B 95.4 0.0086 2.9E-07 46.3 3.0 24 16-39 4-27 (189)
408 2y8e_A RAB-protein 6, GH09086P 95.4 0.01 3.6E-07 45.3 3.4 23 17-39 15-37 (179)
409 3q72_A GTP-binding protein RAD 95.4 0.0088 3E-07 45.3 2.9 22 17-38 3-24 (166)
410 1m7b_A RND3/RHOE small GTP-bin 95.3 0.0094 3.2E-07 46.3 3.1 24 16-39 7-30 (184)
411 3tui_C Methionine import ATP-b 95.3 0.011 3.6E-07 52.0 3.6 26 15-40 53-78 (366)
412 3qks_A DNA double-strand break 95.3 0.013 4.4E-07 47.0 3.9 27 16-42 23-49 (203)
413 1ewq_A DNA mismatch repair pro 95.3 0.066 2.3E-06 51.5 9.4 25 16-40 576-600 (765)
414 2a9k_A RAS-related protein RAL 95.3 0.01 3.4E-07 45.7 3.2 24 16-39 18-41 (187)
415 1z0f_A RAB14, member RAS oncog 95.3 0.012 4E-07 45.0 3.5 24 16-39 15-38 (179)
416 3con_A GTPase NRAS; structural 95.3 0.012 4E-07 45.8 3.5 23 17-39 22-44 (190)
417 2hxs_A RAB-26, RAS-related pro 95.3 0.0091 3.1E-07 45.8 2.8 24 16-39 6-29 (178)
418 3k53_A Ferrous iron transport 95.3 0.01 3.5E-07 49.6 3.3 24 16-39 3-26 (271)
419 3bwd_D RAC-like GTP-binding pr 95.3 0.014 4.7E-07 44.9 3.9 24 16-39 8-31 (182)
420 2oil_A CATX-8, RAS-related pro 95.3 0.012 4E-07 46.0 3.5 24 16-39 25-48 (193)
421 3pqc_A Probable GTP-binding pr 95.3 0.011 3.8E-07 45.9 3.3 24 16-39 23-46 (195)
422 2efe_B Small GTP-binding prote 95.2 0.013 4.3E-07 45.1 3.5 24 16-39 12-35 (181)
423 2atv_A RERG, RAS-like estrogen 95.2 0.013 4.5E-07 45.9 3.7 24 16-39 28-51 (196)
424 2bme_A RAB4A, RAS-related prot 95.2 0.012 4.3E-07 45.4 3.4 24 16-39 10-33 (186)
425 3kkq_A RAS-related protein M-R 95.2 0.012 4.1E-07 45.4 3.3 24 16-39 18-41 (183)
426 1moz_A ARL1, ADP-ribosylation 95.2 0.0093 3.2E-07 46.0 2.5 24 15-38 17-40 (183)
427 4f4c_A Multidrug resistance pr 95.2 0.028 9.5E-07 57.4 6.6 28 14-41 442-469 (1321)
428 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.014 4.7E-07 45.0 3.5 23 17-39 6-28 (186)
429 3tw8_B RAS-related protein RAB 95.2 0.012 4.1E-07 45.0 3.1 24 16-39 9-32 (181)
430 2dpy_A FLII, flagellum-specifi 95.1 0.014 4.7E-07 52.6 3.9 25 17-41 158-182 (438)
431 2obl_A ESCN; ATPase, hydrolase 95.1 0.013 4.4E-07 51.1 3.5 26 16-41 71-96 (347)
432 2p5s_A RAS and EF-hand domain 95.1 0.015 5.1E-07 45.8 3.6 24 16-39 28-51 (199)
433 2gf9_A RAS-related protein RAB 95.1 0.015 5E-07 45.3 3.5 24 16-39 22-45 (189)
434 3ihw_A Centg3; RAS, centaurin, 95.1 0.014 4.6E-07 45.6 3.3 23 17-39 21-43 (184)
435 2www_A Methylmalonic aciduria 95.1 0.016 5.6E-07 50.4 4.1 26 16-41 74-99 (349)
436 2cxx_A Probable GTP-binding pr 95.1 0.013 4.5E-07 45.3 3.2 22 18-39 3-24 (190)
437 1vg8_A RAS-related protein RAB 95.1 0.013 4.5E-07 46.2 3.1 24 16-39 8-31 (207)
438 3dz8_A RAS-related protein RAB 95.0 0.016 5.5E-07 45.2 3.6 25 16-40 23-47 (191)
439 3c5c_A RAS-like protein 12; GD 95.0 0.014 4.9E-07 45.5 3.3 23 17-39 22-44 (187)
440 2fh5_B SR-beta, signal recogni 95.0 0.016 5.4E-07 46.1 3.6 24 16-39 7-30 (214)
441 1ksh_A ARF-like protein 2; sma 95.0 0.015 5.1E-07 45.1 3.3 25 15-39 17-41 (186)
442 3tkl_A RAS-related protein RAB 95.0 0.016 5.4E-07 45.2 3.5 24 16-39 16-39 (196)
443 2bov_A RAla, RAS-related prote 95.0 0.016 5.4E-07 45.6 3.5 24 16-39 14-37 (206)
444 1fzq_A ADP-ribosylation factor 95.0 0.016 5.3E-07 45.0 3.4 24 16-39 16-39 (181)
445 3t1o_A Gliding protein MGLA; G 95.0 0.015 5.2E-07 45.2 3.3 26 16-41 14-39 (198)
446 2gf0_A GTP-binding protein DI- 95.0 0.017 5.9E-07 45.1 3.7 24 16-39 8-31 (199)
447 1zd9_A ADP-ribosylation factor 95.0 0.014 4.7E-07 45.5 3.1 24 16-39 22-45 (188)
448 2fg5_A RAB-22B, RAS-related pr 95.0 0.016 5.4E-07 45.4 3.4 24 16-39 23-46 (192)
449 1z06_A RAS-related protein RAB 95.0 0.014 4.9E-07 45.4 3.1 23 17-39 21-43 (189)
450 4ag6_A VIRB4 ATPase, type IV s 95.0 0.028 9.6E-07 49.5 5.4 26 16-41 35-60 (392)
451 3t5g_A GTP-binding protein RHE 95.0 0.016 5.6E-07 44.5 3.4 23 16-38 6-28 (181)
452 3vlf_B 26S protease regulatory 95.0 0.012 4E-07 40.7 2.3 38 198-248 3-40 (88)
453 1x3s_A RAS-related protein RAB 95.0 0.017 5.7E-07 44.9 3.5 24 16-39 15-38 (195)
454 2p67_A LAO/AO transport system 95.0 0.018 6.2E-07 49.9 4.0 27 15-41 55-81 (341)
455 1yrb_A ATP(GTP)binding protein 95.0 0.019 6.5E-07 47.3 4.0 26 16-41 14-39 (262)
456 3cph_A RAS-related protein SEC 95.0 0.017 5.8E-07 45.7 3.6 25 15-39 19-43 (213)
457 3reg_A RHO-like small GTPase; 95.0 0.017 5.8E-07 45.1 3.5 24 16-39 23-46 (194)
458 2iwr_A Centaurin gamma 1; ANK 94.9 0.012 4E-07 45.3 2.5 24 16-39 7-30 (178)
459 2a5j_A RAS-related protein RAB 94.9 0.017 5.9E-07 45.0 3.5 24 16-39 21-44 (191)
460 2bcg_Y Protein YP2, GTP-bindin 94.9 0.017 5.6E-07 45.7 3.4 24 16-39 8-31 (206)
461 4hlc_A DTMP kinase, thymidylat 94.9 0.02 6.8E-07 46.0 3.9 25 17-41 3-27 (205)
462 3lxx_A GTPase IMAP family memb 94.9 0.014 4.7E-07 47.7 3.0 24 16-39 29-52 (239)
463 4dzz_A Plasmid partitioning pr 94.9 0.035 1.2E-06 43.7 5.3 35 18-58 3-38 (206)
464 3oes_A GTPase rhebl1; small GT 94.9 0.017 5.9E-07 45.5 3.4 24 16-39 24-47 (201)
465 2b6h_A ADP-ribosylation factor 94.9 0.017 6E-07 45.3 3.4 23 16-38 29-51 (192)
466 1zj6_A ADP-ribosylation factor 94.9 0.019 6.4E-07 44.6 3.5 24 15-38 15-38 (187)
467 2rcn_A Probable GTPase ENGC; Y 94.9 0.018 6E-07 50.5 3.6 25 16-40 215-239 (358)
468 1f6b_A SAR1; gtpases, N-termin 94.9 0.015 5E-07 46.0 2.9 23 16-38 25-47 (198)
469 1gwn_A RHO-related GTP-binding 94.9 0.017 5.7E-07 46.1 3.2 24 16-39 28-51 (205)
470 2ew1_A RAS-related protein RAB 94.8 0.018 6.3E-07 45.7 3.4 24 16-39 26-49 (201)
471 1zbd_A Rabphilin-3A; G protein 94.8 0.018 6.1E-07 45.3 3.3 24 16-39 8-31 (203)
472 4bas_A ADP-ribosylation factor 94.8 0.015 5E-07 45.5 2.8 24 16-39 17-40 (199)
473 2qag_B Septin-6, protein NEDD5 94.8 0.015 5.1E-07 52.1 3.1 21 19-39 45-65 (427)
474 3aji_B S6C, proteasome (prosom 94.8 0.011 3.6E-07 40.3 1.7 38 198-248 3-40 (83)
475 2qnr_A Septin-2, protein NEDD5 94.8 0.015 5.2E-07 49.6 3.0 24 16-39 18-41 (301)
476 1knx_A Probable HPR(Ser) kinas 94.8 0.015 5.1E-07 49.9 2.9 25 15-39 146-170 (312)
477 2cjw_A GTP-binding protein GEM 94.7 0.021 7.2E-07 44.9 3.5 23 17-39 7-29 (192)
478 3euj_A Chromosome partition pr 94.7 0.024 8.4E-07 51.6 4.2 25 17-41 30-54 (483)
479 2h17_A ADP-ribosylation factor 94.7 0.016 5.4E-07 44.8 2.7 24 16-39 21-44 (181)
480 1ko7_A HPR kinase/phosphatase; 94.7 0.02 6.8E-07 49.2 3.5 24 16-39 144-167 (314)
481 1qhl_A Protein (cell division 94.6 0.0072 2.5E-07 49.5 0.6 23 19-41 30-52 (227)
482 2q3h_A RAS homolog gene family 94.6 0.022 7.6E-07 44.7 3.4 25 15-39 19-43 (201)
483 3iby_A Ferrous iron transport 94.6 0.018 6.2E-07 47.8 3.0 23 17-39 2-24 (256)
484 2fv8_A H6, RHO-related GTP-bin 94.6 0.022 7.6E-07 45.1 3.4 24 16-39 25-48 (207)
485 2atx_A Small GTP binding prote 94.6 0.023 7.8E-07 44.3 3.4 23 17-39 19-41 (194)
486 2qu8_A Putative nucleolar GTP- 94.6 0.019 6.4E-07 46.4 3.0 24 16-39 29-52 (228)
487 2yv5_A YJEQ protein; hydrolase 94.6 0.022 7.6E-07 48.5 3.6 24 16-40 165-188 (302)
488 3hjn_A DTMP kinase, thymidylat 94.5 0.026 8.9E-07 45.0 3.7 24 19-42 3-26 (197)
489 1wp9_A ATP-dependent RNA helic 94.5 0.032 1.1E-06 49.4 4.7 23 18-40 25-47 (494)
490 2fu5_C RAS-related protein RAB 94.5 0.013 4.4E-07 45.2 1.7 24 16-39 8-31 (183)
491 2gco_A H9, RHO-related GTP-bin 94.5 0.021 7.1E-07 45.1 3.0 24 16-39 25-48 (201)
492 2o52_A RAS-related protein RAB 94.5 0.023 7.8E-07 44.8 3.2 24 16-39 25-48 (200)
493 2xtp_A GTPase IMAP family memb 94.5 0.023 8E-07 46.8 3.4 25 15-39 21-45 (260)
494 1u0l_A Probable GTPase ENGC; p 94.5 0.016 5.6E-07 49.3 2.5 25 16-40 169-193 (301)
495 2hup_A RAS-related protein RAB 94.5 0.025 8.5E-07 44.7 3.4 24 16-39 29-52 (201)
496 2x77_A ADP-ribosylation factor 94.4 0.018 6.3E-07 44.7 2.5 24 15-38 21-44 (189)
497 1yqt_A RNAse L inhibitor; ATP- 94.4 0.026 8.8E-07 52.2 3.8 28 13-40 44-71 (538)
498 2j0v_A RAC-like GTP-binding pr 94.4 0.025 8.4E-07 44.9 3.2 24 16-39 9-32 (212)
499 3cbq_A GTP-binding protein REM 94.4 0.019 6.4E-07 45.3 2.5 22 17-38 24-45 (195)
500 2ck3_D ATP synthase subunit be 94.4 0.19 6.4E-06 45.6 9.2 24 17-40 154-177 (482)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=276.29 Aligned_cols=181 Identities=25% Similarity=0.374 Sum_probs=155.2
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
..++++|+|+|||||||||||++|+++|++++. +|+.++++++.++|+|+++..++++|..|+.. .
T Consensus 176 ~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---------~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~-----a 241 (405)
T 4b4t_J 176 SLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC---------KFIRVSGAELVQKYIGEGSRMVRELFVMAREH-----A 241 (405)
T ss_dssp HHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---------EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT-----C
T ss_pred hCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---------CceEEEhHHhhccccchHHHHHHHHHHHHHHh-----C
Confidence 345667999999999999999999999999965 88999999999999999999999999999975 9
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|+||||||+|.+++.|.....+. +....+++++||++||++.... .+.+++ +||.++.|
T Consensus 242 P~IIFiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~~~---------~V~vIa-----------ATNrpd~L 300 (405)
T 4b4t_J 242 PSIIFMDEIDSIGSTRVEGSGGG-DSEVQRTMLELLNQLDGFETSK---------NIKIIM-----------ATNRLDIL 300 (405)
T ss_dssp SEEEEEESSSCCTTSCSCSSSGG-GGHHHHHHHHHHHHHHTTTCCC---------CEEEEE-----------EESCSSSS
T ss_pred CceEeeecchhhccCCCCCCCCC-cHHHHHHHHHHHHhhhccCCCC---------CeEEEe-----------ccCChhhC
Confidence 99999999999998876543222 3355689999999999986432 233344 77888999
Q ss_pred HHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccccc
Q psy3997 170 EKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSS 247 (256)
Q Consensus 170 d~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~ 247 (256)
|+|+.| ||+.++++++|+ .++|.+|++.++...... .+.+++.|++.|+| |||.|
T Consensus 301 DpAllRpGRfD~~I~i~lPd----------~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G------------~SGAD 357 (405)
T 4b4t_J 301 DPALLRPGRIDRKIEFPPPS----------VAARAEILRIHSRKMNLT-RGINLRKVAEKMNG------------CSGAD 357 (405)
T ss_dssp CHHHHSTTSSCCEEECCCCC----------HHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCS------------CCHHH
T ss_pred CHhHcCCCcCceEEEcCCcC----------HHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCC------------CCHHH
Confidence 999998 999999999999 999999999998766543 55679999999999 99999
Q ss_pred c
Q psy3997 248 L 248 (256)
Q Consensus 248 ~ 248 (256)
|
T Consensus 358 i 358 (405)
T 4b4t_J 358 V 358 (405)
T ss_dssp H
T ss_pred H
Confidence 8
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=268.71 Aligned_cols=182 Identities=23% Similarity=0.318 Sum_probs=155.8
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
+..++++|+|+|||||||||||++|+++|++++. +|+.++++++.++|+|+++..++.+|..|+..
T Consensus 209 ~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---------~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~----- 274 (437)
T 4b4t_I 209 EEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA---------TFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN----- 274 (437)
T ss_dssp HHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---------EEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT-----
T ss_pred HhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC---------CEEEEEHHHhhhccCchHHHHHHHHHHHHHhc-----
Confidence 3446677999999999999999999999999965 88999999999999999999999999999965
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.|+||||||+|.+++.|.....+. .....++++++|++||++.... .+.+++ +||.++.
T Consensus 275 aP~IIfiDEiDai~~~R~~~~~~~-~~~~~~~l~~LL~~lDg~~~~~---------~ViVIa-----------ATNrpd~ 333 (437)
T 4b4t_I 275 APSIVFIDEIDAIGTKRYDSNSGG-EREIQRTMLELLNQLDGFDDRG---------DVKVIM-----------ATNKIET 333 (437)
T ss_dssp CSEEEEEEEESSSSCCCSCSSCSS-CCHHHHHHHHHHHHHHHCCCSS---------SEEEEE-----------EESCSTT
T ss_pred CCcEEEEehhhhhcccCCCCCCCc-cHHHHHHHHHHHHHhhCcCCCC---------CEEEEE-----------eCCChhh
Confidence 999999999999999886543332 3455788999999999876432 233334 7788899
Q ss_pred HHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 169 LEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 169 ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
||+|+.| ||+.++++++|+ .++|.+|++.++...... .+.+++.|++.|+| |||.
T Consensus 334 LDpALlRpGRfD~~I~v~lPd----------~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~G------------fSGA 390 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPD----------LSTKKKILGIHTSKMNLS-EDVNLETLVTTKDD------------LSGA 390 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCC----------HHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCS------------CCHH
T ss_pred cCHHHhcCCceeEEEEcCCcC----------HHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCC------------CCHH
Confidence 9999998 999999999999 999999999999765543 55679999999999 9999
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 391 DI 392 (437)
T 4b4t_I 391 DI 392 (437)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-36 Score=270.33 Aligned_cols=182 Identities=25% Similarity=0.372 Sum_probs=154.3
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
+..++++|+|+|||||||||||++|+++|++++. +|+.++++++.++|+|++++.++.+|..|+..
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---------~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~----- 273 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA---------TFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK----- 273 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---------EEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH-----
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---------CEEEEehhhhhhcccchHHHHHHHHHHHHHhc-----
Confidence 3446777999999999999999999999999965 88999999999999999999999999999976
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.|+||||||+|.+++.|.....+. .....+++++||++||++.... ++.+.+ +||.++.
T Consensus 274 aP~IifiDEiDal~~~R~~~~~~~-~~~~~~~~~~lL~~ldg~~~~~---------~ViVIa-----------aTNrp~~ 332 (434)
T 4b4t_M 274 APTIIFIDELDAIGTKRFDSEKSG-DREVQRTMLELLNQLDGFSSDD---------RVKVLA-----------ATNRVDV 332 (434)
T ss_dssp CSEEEEEECTHHHHCCCSSGGGGT-THHHHHHHHHHHHHHTTSCSSC---------SSEEEE-----------ECSSCCC
T ss_pred CCeEEeecchhhhhhccCCCCCCC-chHHHHHHHHHHHHhhccCCCC---------CEEEEE-----------eCCCchh
Confidence 999999999999998886543322 2345678899999999886532 233333 7788899
Q ss_pred HHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 169 LEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 169 ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
||+|+.| ||+.++++++|+ .++|.+|++.+++..... .+-+++.|++.|+| |||.
T Consensus 333 LD~AllRpGRfD~~I~i~lPd----------~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G------------~sGA 389 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPS----------EDSRAQILQIHSRKMTTD-DDINWQELARSTDE------------FNGA 389 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCC----------HHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSS------------CCHH
T ss_pred cCHhHhcCCceeEEEEeCCcC----------HHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCC------------CCHH
Confidence 9999988 999999999999 999999999888655433 45679999999999 9999
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 390 Di 391 (434)
T 4b4t_M 390 QL 391 (434)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=267.19 Aligned_cols=181 Identities=23% Similarity=0.337 Sum_probs=153.5
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
..++++|+|+|||||||||||++|+++|++++. +|+.++++++.++|+|++++.++.+|..|+.. .
T Consensus 237 ~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---------~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~-----a 302 (467)
T 4b4t_H 237 TLGIDPPKGILLYGPPGTGKTLCARAVANRTDA---------TFIRVIGSELVQKYVGEGARMVRELFEMARTK-----K 302 (467)
T ss_dssp HHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---------EEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT-----C
T ss_pred HCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---------CeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc-----C
Confidence 345667999999999999999999999999965 88999999999999999999999999999965 9
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|+||||||+|.++..|.....+ ......++++++|++||++.... .+.+++ +||.++.|
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~~---------~ViVIa-----------ATNrpd~L 361 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDPRG---------NIKVMF-----------ATNRPNTL 361 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCG-GGGHHHHHHHHHHHHHHSSCCTT---------TEEEEE-----------ECSCTTSB
T ss_pred CceEeecccccccccccCcCCC-ccHHHHHHHHHHHHHhhccCCCC---------cEEEEe-----------CCCCcccC
Confidence 9999999999999888653322 23445678899999999875432 233334 77888999
Q ss_pred HHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccccc
Q psy3997 170 EKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSS 247 (256)
Q Consensus 170 d~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~ 247 (256)
|+|++| ||+.++++++|+ .++|.+|++.++...... .+-+++.|++.|+| |||.|
T Consensus 362 DpALlRpGRFD~~I~i~lPd----------~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~G------------fSGAD 418 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPD----------LEGRANIFRIHSKSMSVE-RGIRWELISRLCPN------------STGAE 418 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCC----------HHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCS------------CCHHH
T ss_pred ChhhhccccccEEEEeCCcC----------HHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCC------------CCHHH
Confidence 999998 999999999999 999999999998765443 55679999999999 99999
Q ss_pred c
Q psy3997 248 L 248 (256)
Q Consensus 248 ~ 248 (256)
|
T Consensus 419 I 419 (467)
T 4b4t_H 419 L 419 (467)
T ss_dssp H
T ss_pred H
Confidence 8
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=268.34 Aligned_cols=181 Identities=27% Similarity=0.376 Sum_probs=154.1
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
..+++||+|+|||||||||||++|+++|++++. +|+.++++++.++|+|+++..++.+|..|+.. .
T Consensus 209 ~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---------~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~-----~ 274 (437)
T 4b4t_L 209 RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---------NFIFSPASGIVDKYIGESARIIREMFAYAKEH-----E 274 (437)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---------EEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS-----C
T ss_pred hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEehhhhccccchHHHHHHHHHHHHHHhc-----C
Confidence 345677999999999999999999999999965 88999999999999999999999999999965 9
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|+||||||+|.+++.|...... .+....+++++||++||++.... .+.+++ +||.++.|
T Consensus 275 P~IifiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~~---------~vivI~-----------ATNrp~~L 333 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTS-ADREIQRTLMELLTQMDGFDNLG---------QTKIIM-----------ATNRPDTL 333 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCS-STTHHHHHHHHHHHHHHSSSCTT---------SSEEEE-----------EESSTTSS
T ss_pred CceeeeecccccccccccCCCC-cchHHHHHHHHHHHHhhcccCCC---------CeEEEE-----------ecCCchhh
Confidence 9999999999999888654322 23455788999999999986532 223333 77888999
Q ss_pred HHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCcccccccc
Q psy3997 170 EKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSS 247 (256)
Q Consensus 170 d~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~ 247 (256)
|+|++| ||+.++++++|+ .++|.+|++.++...... .+.+++.|++.|+| |||.|
T Consensus 334 DpAllRpGRfD~~I~i~lPd----------~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G------------~sGAD 390 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPN----------EAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDG------------FNGAD 390 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCC----------HHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCS------------CCHHH
T ss_pred CHHHhCCCccceeeecCCcC----------HHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCC------------CCHHH
Confidence 999987 699999999999 999999999998765543 56779999999999 99999
Q ss_pred c
Q psy3997 248 L 248 (256)
Q Consensus 248 ~ 248 (256)
|
T Consensus 391 i 391 (437)
T 4b4t_L 391 I 391 (437)
T ss_dssp H
T ss_pred H
Confidence 8
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=265.81 Aligned_cols=181 Identities=27% Similarity=0.401 Sum_probs=154.7
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCC
Q psy3997 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES 89 (256)
Q Consensus 10 ~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~ 89 (256)
..++++|+|+|||||||||||++|+++|++++. +|+.++++++.++|+|+++..++++|..|+.. .
T Consensus 200 ~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~---------~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~-----a 265 (428)
T 4b4t_K 200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA---------AFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN-----A 265 (428)
T ss_dssp HHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC---------EEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT-----C
T ss_pred hCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecchhhccccchhHHHHHHHHHHHHHc-----C
Confidence 345677999999999999999999999999965 88999999999999999999999999999965 8
Q ss_pred eEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 90 LVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 90 p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
|+||||||+|.++..|.....+. +....+++++||++||++.... .+.+++ +||.++.|
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~-~~~~~r~l~~lL~~ldg~~~~~---------~v~vI~-----------aTN~~~~L 324 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMDGFDQST---------NVKVIM-----------ATNRADTL 324 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCC-CCHHHHHHHHHHHHHHHSCSSC---------SEEEEE-----------EESCSSSC
T ss_pred CCeeechhhhhhhccccCCCCCC-ChHHHHHHHHHHHHhhCCCCCC---------CEEEEE-----------ecCChhhc
Confidence 99999999999999886543332 3456789999999999986533 223333 77888999
Q ss_pred HHHHhh--HhhhhhccC-CCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 170 EKTVLD--LLVEEKSLP-LKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 170 d~ai~r--Rf~~~i~~~-~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
|+|+.| ||+.++++| +|+ .++|..|++.++...... .+.+++.|++.|+| |||.
T Consensus 325 D~AllRpGRfd~~I~~p~lPd----------~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G------------~sga 381 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRD----------RRERRLIFGTIASKMSLA-PEADLDSLIIRNDS------------LSGA 381 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCC----------HHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTT------------CCHH
T ss_pred ChhhhcCCcceEEEEcCCCCC----------HHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCC------------CCHH
Confidence 999998 999999996 899 999999999888665433 55679999999999 9999
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 382 di 383 (428)
T 4b4t_K 382 VI 383 (428)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=1.1e-33 Score=271.84 Aligned_cols=182 Identities=27% Similarity=0.394 Sum_probs=127.0
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
...++.+|+++|||||||||||++|+++|++++. +|+.++++++.++|+|++++.++++|+.|+..
T Consensus 504 ~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~---------~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~----- 569 (806)
T 3cf2_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIKGPELLTMWFGESEANVREIFDKARQA----- 569 (806)
T ss_dssp SSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC---------EEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT-----
T ss_pred HhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC---------ceEEeccchhhccccchHHHHHHHHHHHHHHc-----
Confidence 3445667999999999999999999999999865 88999999999999999999999999999954
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.||||||||||.+++.|..... .......+++++||++||++.... .+.+++ +||.++.
T Consensus 570 ~P~IifiDEiDsl~~~R~~~~~-~~~~~~~rv~~~lL~~mdg~~~~~---------~V~vi~-----------aTN~p~~ 628 (806)
T 3cf2_A 570 APCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKK---------NVFIIG-----------ATNRPDI 628 (806)
T ss_dssp CSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSS---------SEEEEC-----------C-CCSSS
T ss_pred CCceeechhhhHHhhccCCCCC-CCchHHHHHHHHHHHHHhCCCCCC---------CEEEEE-----------eCCCchh
Confidence 8999999999999998864321 223445689999999999986432 233444 7888899
Q ss_pred HHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 169 LEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 169 ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
||+|++| ||+.++++++|+ .++|.+|++.+++..... .+.+++.|++.|+| |||.
T Consensus 629 lD~AllRpgRfd~~i~v~lPd----------~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g------------~SGa 685 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPD----------EKSRVAILKANLRKSPVA-KDVDLEFLAKMTNG------------FSGA 685 (806)
T ss_dssp SCHHHHSTTTSCCEEEC---------------CHHHHTTTTTSSCC--C-CC----------------------------
T ss_pred CCHhHcCCCcceEEEEECCcC----------HHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC------------CCHH
Confidence 9999999 999999999999 999999999888765443 56789999999999 9999
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 686 di 687 (806)
T 3cf2_A 686 DL 687 (806)
T ss_dssp CH
T ss_pred HH
Confidence 98
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=1.4e-31 Score=257.06 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=153.4
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC
Q psy3997 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 9 ~~~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~ 88 (256)
+..++.+|+|||||||||||||++|+++|++++. +|+.++++++.++++|+++..++++|+.|+. .
T Consensus 231 ~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~---------~~~~v~~~~l~sk~~gese~~lr~lF~~A~~-----~ 296 (806)
T 3cf2_A 231 KAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---------FFFLINGPEIMSKLAGESESNLRKAFEEAEK-----N 296 (806)
T ss_dssp TSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC---------EEEEEEHHHHHSSCTTHHHHHHHHHHHHHTT-----S
T ss_pred hhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---------eEEEEEhHHhhcccchHHHHHHHHHHHHHHH-----c
Confidence 3345566999999999999999999999999865 8899999999999999999999999999984 4
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.|+||||||+|.++++|... ......+++++|+++|+++.... .+.+++ +||.++.
T Consensus 297 ~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~---------~V~VIa-----------aTN~~d~ 352 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRA---------HVIVMA-----------ATNRPNS 352 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGG---------CEEEEE-----------ECSSTTT
T ss_pred CCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccC---------CEEEEE-----------ecCChhh
Confidence 99999999999999988643 23455789999999999986532 233444 6777899
Q ss_pred HHHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccc
Q psy3997 169 LEKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFS 246 (256)
Q Consensus 169 ld~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~ 246 (256)
||++++| ||+..+++++|+ +++|.+|++.++...... .+.+++.|++.|+| |+|.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd----------~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~G------------fsga 409 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPD----------ATGRLEILQIHTKNMKLA-DDVDLEQVANETHG------------HVGA 409 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCC----------HHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCS------------CCHH
T ss_pred cCHHHhCCcccceEEecCCCC----------HHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCC------------CCHH
Confidence 9999999 999999999999 999999999888765544 66789999999999 8888
Q ss_pred cc
Q psy3997 247 SL 248 (256)
Q Consensus 247 ~~ 248 (256)
||
T Consensus 410 DL 411 (806)
T 3cf2_A 410 DL 411 (806)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=214.49 Aligned_cols=179 Identities=30% Similarity=0.425 Sum_probs=148.8
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
...+++++|||||||||||++|+++|++++ ..+|+.++++++.+++.|+++..++.+|..+... .|+
T Consensus 41 ~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~-----~~~ 107 (322)
T 1xwi_A 41 KRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN-----KPS 107 (322)
T ss_dssp TCCCCSEEEEESSSSSCHHHHHHHHHHHTT--------SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHT-----SSE
T ss_pred CCCCCceEEEECCCCccHHHHHHHHHHHcC--------CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhc-----CCc
Confidence 345689999999999999999999999982 3488999999999999999999999999998854 899
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.+.+.+... ......+++++++..|+++.... ..+.+++ ++|.++.+|+
T Consensus 108 vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~--------~~v~vI~-----------atn~~~~ld~ 164 (322)
T 1xwi_A 108 IIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDN--------DGILVLG-----------ATNIPWVLDS 164 (322)
T ss_dssp EEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCC--------TTEEEEE-----------EESCTTTSCH
T ss_pred EEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccC--------CCEEEEE-----------ecCCcccCCH
Confidence 99999999998876532 34456789999999999875322 2233333 5566688999
Q ss_pred HHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
+++|||+..+++++|+ .++|.++++.++......-.+..++.|++.|+| |||+||
T Consensus 165 al~rRf~~~i~i~~P~----------~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G------------~sgadl 219 (322)
T 1xwi_A 165 AIRRRFEKRIYIPLPE----------PHARAAMFKLHLGTTQNSLTEADFRELGRKTDG------------YSGADI 219 (322)
T ss_dssp HHHHTCCEEEECCCCC----------HHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTT------------CCHHHH
T ss_pred HHHhhcCeEEEeCCcC----------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCC------------CCHHHH
Confidence 9999999999999999 999999999988766544356899999999999 788877
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=8.8e-28 Score=210.46 Aligned_cols=178 Identities=26% Similarity=0.391 Sum_probs=146.6
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
...+++++|||||||||||++|+++|++++. +|++++++++.+.++|+++..++.+|..+... .|+
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~~~---------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~~~ 112 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANS---------TFFSVSSSDLVSKWMGESEKLVKQLFAMAREN-----KPS 112 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHHTC---------EEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHT-----SSE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHHCC---------CEEEEchHHHhhcccchHHHHHHHHHHHHHhc-----CCe
Confidence 3456899999999999999999999999854 78999999999999999999999999998864 899
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.+...+... ......++.++++..|+++..... .+.+++ +||.++.||+
T Consensus 113 vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~--------~v~vi~-----------atn~~~~ld~ 169 (322)
T 3eie_A 113 IIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQ--------GVLVLG-----------ATNIPWQLDS 169 (322)
T ss_dssp EEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCC--------CEEEEE-----------EESCGGGSCH
T ss_pred EEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCC--------ceEEEE-----------ecCChhhCCH
Confidence 99999999998876532 233457899999999998854332 223333 5666788999
Q ss_pred HHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
++.|||+..+++++|+ .++|.++++.++......-.+..++.|++.|.| |||.||
T Consensus 170 al~~Rf~~~i~~~~p~----------~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g------------~sg~di 224 (322)
T 3eie_A 170 AIRRRFERRIYIPLPD----------LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG------------YSGSDI 224 (322)
T ss_dssp HHHHHCCEEEECCCCC----------HHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTT------------CCHHHH
T ss_pred HHHcccCeEEEeCCCC----------HHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC------------CCHHHH
Confidence 9999999999999999 999999999999876554466899999999998 788777
No 11
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=4.5e-27 Score=208.69 Aligned_cols=177 Identities=27% Similarity=0.408 Sum_probs=140.5
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
..+++++|||||||||||++|+++|++++. +|+.++++++...+.|..+..++.+|..+... .|+|
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~~~---------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~~~v 146 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEANS---------TFFSVSSSDLVSKWMGESEKLVKQLFAMAREN-----KPSI 146 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHHTC---------EEEEEEHHHHHSCC---CHHHHHHHHHHHHHT-----SSEE
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC---------CEEEeeHHHHhhhhcchHHHHHHHHHHHHHHc-----CCeE
Confidence 456889999999999999999999999864 78999999999999999999999999988753 8999
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
|||||+|.+.+.+... ......++.++|+..|+++.... ..+.+++ ++|.++.+|++
T Consensus 147 l~iDEid~l~~~r~~~----~~~~~~~~~~~ll~~l~~~~~~~--------~~v~vI~-----------atn~~~~ld~a 203 (355)
T 2qp9_X 147 IFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDS--------QGVLVLG-----------ATNIPWQLDSA 203 (355)
T ss_dssp EEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC-----------CCEEEEE-----------EESCGGGSCHH
T ss_pred EEEechHhhcccCCCC----cchHHHHHHHHHHHHhhcccccC--------CCeEEEe-----------ecCCcccCCHH
Confidence 9999999998776532 23455788999999999875322 1233333 55666889999
Q ss_pred HhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 173 VLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 173 i~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
+.|||+..+++++|+ .++|..+++.++......-.+..++.|++.|+| |||.||
T Consensus 204 l~rRf~~~i~i~~P~----------~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G------------~sg~dl 257 (355)
T 2qp9_X 204 IRRRFERRIYIPLPD----------LAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG------------YSGSDI 257 (355)
T ss_dssp HHHTCCEEEECCCCC----------HHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTT------------CCHHHH
T ss_pred HHcccCEEEEeCCcC----------HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCC------------CCHHHH
Confidence 999999999999999 999999999998766544356889999999998 777777
No 12
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=8.9e-27 Score=212.51 Aligned_cols=178 Identities=29% Similarity=0.431 Sum_probs=138.3
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
..+++++|||||||||||++|+++|+++. ..+|+.++++++.+.++|.++..++.+|..+... .|+|
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~--------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~~~v 230 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN-----KPSI 230 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCC--------SSEEEEECCC---------CCCTHHHHHHHHHHS-----CSEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcC--------CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHc-----CCeE
Confidence 45689999999999999999999999982 3488999999999999999999999999988753 8999
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
|||||||.+++.+... ......+++++|+..|+++.... ..+.+++ +||.++.+|++
T Consensus 231 l~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~--------~~v~vI~-----------atn~~~~ld~a 287 (444)
T 2zan_A 231 IFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDN--------DGILVLG-----------ATNIPWVLDSA 287 (444)
T ss_dssp EEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCC--------SSCEEEE-----------EESCGGGSCHH
T ss_pred EEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCC--------CCEEEEe-----------cCCCccccCHH
Confidence 9999999998776532 23455789999999998875322 1223333 55666889999
Q ss_pred HhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 173 VLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 173 i~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
++|||+..+++++|+ .+.|..|++.++......-.+..++.|++.|+| |||.||
T Consensus 288 l~rRf~~~i~i~~P~----------~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G------------~sgadl 341 (444)
T 2zan_A 288 IRRRFEKRIYIPLPE----------AHARAAMFRLHLGSTQNSLTEADFQELGRKTDG------------YSGADI 341 (444)
T ss_dssp HHTTCCEEEECCCCC----------HHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTT------------CCHHHH
T ss_pred HHhhcceEEEeCCcC----------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCC------------CCHHHH
Confidence 999999999999999 999999999998765543356889999999998 788777
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.93 E-value=1.5e-26 Score=200.89 Aligned_cols=179 Identities=28% Similarity=0.417 Sum_probs=144.4
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
++++++++|||||||||||++|+++|++++. +|+.++++++.+.++|+++..++.+|..+... .|+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~---------~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----~p~ 110 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIKGPELLTMWFGESEANVREIFDKARQA-----APC 110 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---------EEEEECHHHHHHHHHTTCTTHHHHHHHHHHHT-----CSE
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhCC---------CEEEEEhHHHHhhhcCchHHHHHHHHHHHHhc-----CCe
Confidence 3566899999999999999999999999853 78999999999999999999999999998854 799
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.+...+...... ......++++++++.|+++... ..+.+++ +||.++.+|+
T Consensus 111 il~iDEid~l~~~~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~---------~~v~vi~-----------atn~~~~ld~ 169 (301)
T 3cf0_A 111 VLFFDELDSIAKARGGNIGD-GGGAADRVINQILTEMDGMSTK---------KNVFIIG-----------ATNRPDIIDP 169 (301)
T ss_dssp EEEECSTTHHHHHHTTTTCC-SSCSCCHHHHHHHHHHHSSCTT---------SSEEEEE-----------EESCGGGSCG
T ss_pred EEEEEChHHHhhccCCCcCC-cchHHHHHHHHHHHHhhcccCC---------CCEEEEE-----------ecCCccccCh
Confidence 99999999999887543211 1223357889999999976422 1233333 5666788999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
++.| ||+..+++++|+ .++|.+|++.++..... ..+..++.+++.|.| |||.||
T Consensus 170 al~r~gRf~~~i~i~~p~----------~~~r~~il~~~l~~~~~-~~~~~~~~la~~~~g------------~sg~dl 225 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLPD----------EKSRVAILKANLRKSPV-AKDVDLEFLAKMTNG------------FSGADL 225 (301)
T ss_dssp GGGSTTSSCEEEECCCCC----------HHHHHHHHHHHHTTSCB-CSSCCHHHHHHTCSS------------CCHHHH
T ss_pred HHhcCCccceEEecCCcC----------HHHHHHHHHHHHccCCC-CccchHHHHHHHcCC------------CCHHHH
Confidence 9988 999999999999 99999999999876543 245678889998887 777776
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.92 E-value=6.6e-26 Score=194.38 Aligned_cols=177 Identities=26% Similarity=0.404 Sum_probs=137.8
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+.+|+|++|+||||||||++++++|.+++. .++.+++.++...+.|+.+..++.+|+.+... .|+
T Consensus 40 ~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---------~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~-----~p~ 105 (274)
T 2x8a_A 40 GLVTPAGVLLAGPPGCGKTLLAKAVANESGL---------NFISVKGPELLNMYVGESERAVRQVFQRAKNS-----APC 105 (274)
T ss_dssp TCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---------EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT-----CSE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---------CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc-----CCC
Confidence 4567899999999999999999999999853 68999999998888899889999999988754 799
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
++++||+|.+...+.... .....+++++++..|++..... .+...+ ++|.++.||+
T Consensus 106 i~~~Deid~~~~~r~~~~----~~~~~~~~~~~l~~Lsgg~~~~---------~~i~ia-----------~tn~p~~LD~ 161 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRE----TGASVRVVNQLLTEMDGLEARQ---------QVFIMA-----------ATNRPDIIDP 161 (274)
T ss_dssp EEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTT---------CEEEEE-----------EESCGGGSCH
T ss_pred eEeeehhhhhhcccCCCc----chHHHHHHHHHHHhhhcccccC---------CEEEEe-----------ecCChhhCCH
Confidence 999999999876554221 1123467899999999875322 222233 5666788999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC--cccccchhHHHHHHhCC--CCcccccCCCcccccc
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS--YPLQHSKHFTELVQSHP--GRCKVTSDDSTLNFSF 245 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~--~~~~~~~~~~~l~~~t~--g~~~~~~~~~~~~~~~ 245 (256)
++.| ||+..+++++|+ .++|.+|++.++... .+...+.+++.++..|. | |||
T Consensus 162 al~r~gRfd~~i~~~~P~----------~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------~sg 219 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPP----------PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDC------------YTG 219 (274)
T ss_dssp HHHSTTSSCEEEECCSCC----------HHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGS------------CCH
T ss_pred hhcCcccCCeEEEeCCcC----------HHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCC------------cCH
Confidence 9998 999999999999 999999999988643 23334577888888754 5 899
Q ss_pred ccc
Q psy3997 246 SSL 248 (256)
Q Consensus 246 ~~~ 248 (256)
.||
T Consensus 220 adl 222 (274)
T 2x8a_A 220 ADL 222 (274)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
No 15
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.92 E-value=2.4e-25 Score=203.69 Aligned_cols=173 Identities=22% Similarity=0.332 Sum_probs=136.4
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
+..+|+++||+||||||||++|+++|++++. +|+.++++++...++|.++..++.+|..|... .|+
T Consensus 45 g~~~p~gvLL~GppGtGKT~Laraia~~~~~---------~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~-----~p~ 110 (476)
T 2ce7_A 45 GARMPKGILLVGPPGTGKTLLARAVAGEANV---------PFFHISGSDFVELFVGVGAARVRDLFAQAKAH-----APC 110 (476)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHHTC---------CEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHT-----CSE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHcCC---------CeeeCCHHHHHHHHhcccHHHHHHHHHHHHhc-----CCC
Confidence 4566899999999999999999999999864 78999999999999999999999999998854 899
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.+.+.++....+ ......+++++++..|+++... ..+.+++ +||.++.+|+
T Consensus 111 ILfIDEid~l~~~r~~~~~g-~~~~~~~~l~~LL~~ld~~~~~---------~~viVIa-----------aTn~~~~Ld~ 169 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGG-GHDEREQTLNQLLVEMDGFDSK---------EGIIVMA-----------ATNRPDILDP 169 (476)
T ss_dssp EEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGG---------GTEEEEE-----------EESCGGGSCG
T ss_pred EEEEechhhhhhhcccccCc-CcHHHHHHHHHHHHHHhccCCC---------CCEEEEE-----------ecCChhhhch
Confidence 99999999998876542211 2334457899999999976432 1223333 5566678999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
++.| ||+..+.+++|+ .++|.+|++.++...... .+.+++.+++.|+|
T Consensus 170 allR~gRFd~~i~i~~Pd----------~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G 219 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPD----------MLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPG 219 (476)
T ss_dssp GGGSTTSSCEEEECCCCC----------HHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTT
T ss_pred hhcccCcceeEeecCCCC----------HHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCC
Confidence 9887 999999999999 999999999888765432 44568889999999
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.91 E-value=4.4e-25 Score=186.83 Aligned_cols=175 Identities=23% Similarity=0.308 Sum_probs=124.0
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
++.+++++||+||||||||++|+++|++++. +++.++++++...+.|.+...++.+|..+... .|+
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~ 100 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQV---------PFLAMAGAEFVEVIGGLGAARVRSLFKEARAR-----APC 100 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---------CEEEEETTTTSSSSTTHHHHHHHHHHHHHHHT-----CSE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------CEEEechHHHHhhccChhHHHHHHHHHHHHhc-----CCe
Confidence 3456899999999999999999999999864 78999999998888888888899999988753 789
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.+...+.....+.........++.++..+++.... ..+.+.+ ++|.++.+|+
T Consensus 101 vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~---------~~~~vi~-----------~tn~~~~ld~ 160 (262)
T 2qz4_A 101 IVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT---------DHVIVLA-----------STNRADILDG 160 (262)
T ss_dssp EEEEECC-------------------CHHHHHHHHHHHTCCTT---------CCEEEEE-----------EESCGGGGGS
T ss_pred EEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC---------CCEEEEe-----------cCCChhhcCH
Confidence 9999999999877654322222233346778888888765321 1222333 4555677899
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccc-hhHHHHHHhCCC
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHS-KHFTELVQSHPG 230 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~-~~~~~l~~~t~g 230 (256)
++.| ||+..+.+++|+ .++|.++++.++......... ...+.+++.++|
T Consensus 161 ~l~~~~R~~~~i~i~~p~----------~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g 212 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPT----------LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPG 212 (262)
T ss_dssp GGGSTTSCCEEEECCSCC----------HHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTT
T ss_pred HHhcCCcCCeEEEeCCcC----------HHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCC
Confidence 9998 999999999999 999999999888654433222 245889999888
No 17
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.90 E-value=2.5e-24 Score=185.82 Aligned_cols=172 Identities=27% Similarity=0.376 Sum_probs=133.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.+++++||+||||||||++|+++|++++. +|+.++++++...+.|..+..++.+|..+... .|+||
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~---------~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~vl 117 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSA---------TFLNISAASLTSKYVGDGEKLVRALFAVARHM-----QPSII 117 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTC---------EEEEEESTTTSSSSCSCHHHHHHHHHHHHHHT-----CSEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCC---------CeEEeeHHHHhhcccchHHHHHHHHHHHHHHc-----CCcEE
Confidence 45789999999999999999999999854 78999999999999999988899999888753 89999
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHH
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTV 173 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai 173 (256)
||||+|.+...+.... .....++.+.++..+++......+ ..+.+.+ ++|.++.+|+++
T Consensus 118 ~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~------~~v~vi~-----------~tn~~~~l~~~l 176 (297)
T 3b9p_A 118 FIDEVDSLLSERSSSE----HEASRRLKTEFLVEFDGLPGNPDG------DRIVVLA-----------ATNRPQELDEAA 176 (297)
T ss_dssp EEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC------------CEEEEE-----------EESCGGGBCHHH
T ss_pred EeccHHHhccccccCc----chHHHHHHHHHHHHHhcccccCCC------CcEEEEe-----------ecCChhhCCHHH
Confidence 9999999987765321 223357888999999877542211 1122223 556667889999
Q ss_pred hhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 174 LDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 174 ~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
.+||+..+++++|+ .+.|..+++.++......-.+..++.+++.++|
T Consensus 177 ~~R~~~~i~~~~p~----------~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g 223 (297)
T 3b9p_A 177 LRRFTKRVYVSLPD----------EQTRELLLNRLLQKQGSPLDTEALRRLAKITDG 223 (297)
T ss_dssp HHHCCEEEECCCCC----------HHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTT
T ss_pred HhhCCeEEEeCCcC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 99999999999999 999999999888654433245789999999988
No 18
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=7.5e-25 Score=189.51 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=117.7
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
..++|+++|||||||||||++|+++|++++. +|++++++++.+.+.|..+..++++|..+..... ...|+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~-~~~~~ 101 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI---------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMC 101 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC---------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT-TSSCC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC---------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh-cCCCe
Confidence 4566899999999999999999999999965 7899999999999999999999999999865443 55899
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCC--CchhhhcccchhhHhhhhcCccCHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGL--SGRTLRKIPFLTFVKYISNNSVSMENFLIAL 169 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~--~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~l 169 (256)
||||||||.+.+.+.... ........+.+.|++.||+......+- ......++.+++ +||.++.+
T Consensus 102 vl~iDEiD~~~~~~~~~~--~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~-----------ttN~~~~l 168 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV-----------TGNDFSTL 168 (293)
T ss_dssp CEEEECCC----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE-----------ECSSCCC-
T ss_pred EEEEechhhhcCCCCCCc--cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE-----------ecCCcccC
Confidence 999999999988544221 112234578899999998654211000 000112233333 55666789
Q ss_pred HHHHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 170 EKTVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 170 d~ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
|+++.| ||+..++ .|+ .++|.+|++.++... +-..+.+++++.+
T Consensus 169 d~al~R~~R~d~~i~--~P~----------~~~r~~Il~~~~~~~-----~~~~~~l~~~~~~ 214 (293)
T 3t15_A 169 YAPLIRDGRMEKFYW--APT----------REDRIGVCTGIFRTD-----NVPAEDVVKIVDN 214 (293)
T ss_dssp -CHHHHHHHEEEEEE--CCC----------HHHHHHHHHHHHGGG-----CCCHHHHHHHHHH
T ss_pred CHHHhCCCCCceeEe--CcC----------HHHHHHHHHHhccCC-----CCCHHHHHHHhCC
Confidence 999997 7777666 578 999999999777533 2235666666665
No 19
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=190.69 Aligned_cols=171 Identities=26% Similarity=0.379 Sum_probs=133.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.+++++||+||||||||++|+++|++++. +|+.++++++...+.|..+..++.+|..+... .|+||
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~---------~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~-----~~~vl 180 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGA---------TFFSISASSLTSKWVGEGEKMVRALFAVARCQ-----QPAVI 180 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTC---------EEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHT-----CSEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC---------eEEEEehHHhhccccchHHHHHHHHHHHHHhc-----CCeEE
Confidence 46899999999999999999999999854 78999999999999999999999999888753 78999
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHH
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTV 173 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai 173 (256)
||||||.+...+.. .......+++++++..+++...... ..+.+++ ++|.++.+|+++
T Consensus 181 ~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~-------~~v~vI~-----------atn~~~~l~~~l 238 (357)
T 3d8b_A 181 FIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSE-------DRILVVG-----------ATNRPQEIDEAA 238 (357)
T ss_dssp EEETHHHHTBC----------CHHHHHHHHHHHHHHC----CC-------CCEEEEE-----------EESCGGGBCHHH
T ss_pred EEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCC-------CCEEEEE-----------ecCChhhCCHHH
Confidence 99999999876543 1234456888999999997653221 1222333 455567789999
Q ss_pred hhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 174 LDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 174 ~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
.|||...+++++|+ .++|..++..++......-.+..++.|++.+.|
T Consensus 239 ~~Rf~~~i~i~~p~----------~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G 285 (357)
T 3d8b_A 239 RRRLVKRLYIPLPE----------ASARKQIVINLMSKEQCCLSEEEIEQIVQQSDA 285 (357)
T ss_dssp HTTCCEEEECCCCC----------HHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTT
T ss_pred HhhCceEEEeCCcC----------HHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCC
Confidence 99999999999999 999999999887654333256889999999998
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.90 E-value=4.7e-24 Score=191.36 Aligned_cols=172 Identities=27% Similarity=0.387 Sum_probs=128.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.+++++|||||||||||++|+++|++++. +|++++|+++...+.|..+..++.+|..+... .|+||
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~---------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-----~~~il 211 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNA---------TFFNISAASLTSKYVGEGEKLVRALFAVAREL-----QPSII 211 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTC---------EEEEECSCCC-------CHHHHHHHHHHHHHS-----SSEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcC---------cEEEeeHHHhhccccchHHHHHHHHHHHHHhc-----CCeEE
Confidence 45789999999999999999999999854 88999999999999999999999999998864 88999
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHH
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTV 173 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai 173 (256)
||||||.++..+.. .......++.+.++..+++...... ..+.+++ ++|.++.+|+++
T Consensus 212 ~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~-------~~v~vI~-----------atn~~~~l~~~l 269 (389)
T 3vfd_A 212 FIDQVDSLLCERRE----GEHDASRRLKTEFLIEFDGVQSAGD-------DRVLVMG-----------ATNRPQELDEAV 269 (389)
T ss_dssp EEETGGGGC------------CTHHHHHHHHHHHHHHHC------------CEEEEE-----------EESCGGGCCHHH
T ss_pred EEECchhhcccCCC----ccchHHHHHHHHHHHHhhcccccCC-------CCEEEEE-----------ecCCchhcCHHH
Confidence 99999999877653 2233457889999999997754221 1233333 455667899999
Q ss_pred hhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 174 LDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 174 ~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
.+||...+++++|+ .++|..+++.++......-.+..++.|++.+.|+
T Consensus 270 ~~R~~~~i~i~~p~----------~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~ 317 (389)
T 3vfd_A 270 LRRFIKRVYVSLPN----------EETRLLLLKNLLCKQGSPLTQKELAQLARMTDGY 317 (389)
T ss_dssp HTTCCEEEECCCCC----------HHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTC
T ss_pred HcCcceEEEcCCcC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC
Confidence 99999999999999 9999999998887654443568899999999994
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.90 E-value=7.5e-25 Score=201.58 Aligned_cols=169 Identities=24% Similarity=0.369 Sum_probs=139.0
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
.++++++|||||||||||++|+++|++++ .+|++++|.++.+.++|+....++.+|..+... .|++
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~---------~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~-----~p~i 300 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-----APAI 300 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCS---------SEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHT-----CSEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhC---------CCEEEEEchHhhhhhcchhHHHHHHHHHHHHhc-----CCcE
Confidence 56689999999999999999999999975 488999999999999999999999999998853 7999
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
|||||||.+.++++.. ......++++.|++.|++..... .+.+.+ +||.++.+|++
T Consensus 301 LfLDEId~l~~~~~~~----~~~~~~~~~~~LL~~ld~~~~~~---------~v~vIa-----------aTn~~~~Ld~a 356 (489)
T 3hu3_A 301 IFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRA---------HVIVMA-----------ATNRPNSIDPA 356 (489)
T ss_dssp EEEESHHHHCBCTTSC----CCHHHHHHHHHHHHHHHHSCTTS---------CEEEEE-----------EESCGGGBCGG
T ss_pred EEecchhhhccccccc----cchHHHHHHHHHHHHhhccccCC---------ceEEEE-----------ecCCccccCHH
Confidence 9999999999876532 23344689999999999764321 222333 56666778999
Q ss_pred Hhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 173 VLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 173 i~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
+.+ ||+..+.+++|+ .++|..+++.++...... .+..++.+++.+.|
T Consensus 357 l~r~gRf~~~i~i~~P~----------~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g 405 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPD----------ATGRLEILQIHTKNMKLA-DDVDLEQVANETHG 405 (489)
T ss_dssp GGSTTSSCEEEECCCCC----------HHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTT
T ss_pred HhCCCcCceEEEeCCCC----------HHHHHHHHHHHHhcCCCc-chhhHHHHHHHccC
Confidence 988 899999999999 999999999888755443 55678999999988
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.90 E-value=2.8e-24 Score=182.08 Aligned_cols=173 Identities=23% Similarity=0.346 Sum_probs=134.3
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
+...|++++|+||||||||++|+++|++++. +++.++++++...+.|.....++.+|+.+.. ..|+
T Consensus 41 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~ 106 (257)
T 1lv7_A 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---------PFFTISGSDFVEMFVGVGASRVRDMFEQAKK-----AAPC 106 (257)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTC---------CEEEECSCSSTTSCCCCCHHHHHHHHHHHHT-----TCSE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---------CEEEEeHHHHHHHhhhhhHHHHHHHHHHHHH-----cCCe
Confidence 3456899999999999999999999999854 6899999999998999998899999998874 3789
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
++||||+|.+...+.....+ ......++++.++..++++.... .+.+++ ++|.++.+|+
T Consensus 107 il~iDeid~l~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~---------~~~vI~-----------~tn~~~~l~~ 165 (257)
T 1lv7_A 107 IIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGNE---------GIIVIA-----------ATNRPDVLDP 165 (257)
T ss_dssp EEEETTHHHHTCCCSTTSCC-TTCHHHHHHHHHHHHHHTCCSSS---------CEEEEE-----------EESCTTTSCG
T ss_pred eehhhhhhhhccCCCCCcCC-CchHHHHHHHHHHHHhhCcccCC---------CEEEEE-----------eeCCchhCCH
Confidence 99999999998766532211 12334568899999998764321 122233 4555577899
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
++.| ||+..+.+++|+ .++|.++++.++.... ...+..+..+++.++|
T Consensus 166 ~l~r~~rf~~~i~i~~P~----------~~~r~~il~~~~~~~~-l~~~~~~~~la~~~~G 215 (257)
T 1lv7_A 166 ALLRPGRFDRQVVVGLPD----------VRGREQILKVHMRRVP-LAPDIDAAIIARGTPG 215 (257)
T ss_dssp GGGSTTSSCEEEECCCCC----------HHHHHHHHHHHHTTSC-BCTTCCHHHHHHTCTT
T ss_pred HHcCCCcCCeEEEeCCCC----------HHHHHHHHHHHHhcCC-CCccccHHHHHHHcCC
Confidence 9988 999999999999 8999999998886643 3345567888998888
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=5.1e-24 Score=182.78 Aligned_cols=173 Identities=25% Similarity=0.395 Sum_probs=134.6
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
++.+++++||+||||||||++|+++|++++. ++++++++++...+.|.....++.+|..+... .|+
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 112 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNA---------TFIRVVGSELVKKFIGEGASLVKDIFKLAKEK-----APS 112 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTTC---------EEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHT-----CSE
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEehHHHHHhccchHHHHHHHHHHHHHHc-----CCe
Confidence 3466899999999999999999999999864 78999999999999999999999999988854 789
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.+.+.+.....+. .......+..++..++++.... .+.+++ ++|.++.+|+
T Consensus 113 vl~iDEid~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~~~~~---------~~~vI~-----------ttn~~~~l~~ 171 (285)
T 3h4m_A 113 IIFIDEIDAIAAKRTDALTGG-DREVQRTLMQLLAEMDGFDARG---------DVKIIG-----------ATNRPDILDP 171 (285)
T ss_dssp EEEEETTHHHHBCCSSSCCGG-GGHHHHHHHHHHHHHHTTCSSS---------SEEEEE-----------ECSCGGGBCH
T ss_pred EEEEECHHHhcccCccccCCc-cHHHHHHHHHHHHHhhCCCCCC---------CEEEEE-----------eCCCchhcCH
Confidence 999999999987765422111 2233455666666666543221 222333 4556678999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
++.+ ||...+.++.|+ .++|.++++.++...... .+..++.++..+.|
T Consensus 172 ~l~~~~Rf~~~i~~~~p~----------~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g 221 (285)
T 3h4m_A 172 AILRPGRFDRIIEVPAPD----------EKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEG 221 (285)
T ss_dssp HHHSTTSEEEEEECCCCC----------HHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTT
T ss_pred HHcCCCcCCeEEEECCCC----------HHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCC
Confidence 9998 999999999999 999999999888765433 55678999999998
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=2.5e-25 Score=216.02 Aligned_cols=179 Identities=28% Similarity=0.413 Sum_probs=139.2
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+.+++++||+||||||||++|+++|++++. .|+.++++++.++|+|+++..++.+|+.++.. .|+
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~---------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~ 572 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIKGPELLTMWFGESEANVREIFDKARQA-----APC 572 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC---------CCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHH-----CSB
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCC---------CEEEEechHhhhhhcCccHHHHHHHHHHHHhc-----CCe
Confidence 4456899999999999999999999999864 67999999999999999999999999999976 799
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
|+||||||.++..+..... .......+++++||+.||++.... .+.+ +.+||.++.||+
T Consensus 573 vl~iDEid~l~~~r~~~~~-~~~~~~~~v~~~LL~~ld~~~~~~---------~v~v-----------I~tTN~~~~ld~ 631 (806)
T 1ypw_A 573 VLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKK---------NVFI-----------IGATNRPDIIDP 631 (806)
T ss_dssp CCCCSSHHHHCCTTTTCCS-HHHHHHHHHHHHHHTTCC---------------CCBC-----------CCCCBSCGGGSC
T ss_pred EEEEEChhhhhhhccCCCC-CcchhHHHHHHHHHHHHhcccccC---------CeEE-----------EEecCCcccCCH
Confidence 9999999999877653211 112245689999999999875432 2223 336677788999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
|+.| ||+..+++++|+ .++|.+|++.++...... .+..++.|++.|.| |||.+|
T Consensus 632 allrpgRf~~~i~~~~p~----------~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g------------~sgadi 687 (806)
T 1ypw_A 632 AILRPGRLDQLIYIPLPD----------EKSRVAILKANLRKSPVA-KDVDLEFLAKMTNG------------FSGADL 687 (806)
T ss_dssp TTSSGGGTTSCCCCCCCC----------CSHHHHHTTTTTSCC-----CCCCSCSCGGGSS------------SCCHHH
T ss_pred HHhCccccCceeecCCCC----------HHHHHHHHHHHhccCCCC-cccCHHHHHHhccc------------cCHHHH
Confidence 9999 999999999999 999999999888665433 44566667776666 888877
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.87 E-value=1.8e-23 Score=192.28 Aligned_cols=174 Identities=24% Similarity=0.371 Sum_probs=134.4
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+..|++++|+||||||||++++++|.+++ ..|++++++++...++|.....++.+|+.+.. ..|+
T Consensus 60 g~~ip~GvLL~GppGtGKTtLaraIa~~~~---------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~-----~~p~ 125 (499)
T 2dhr_A 60 GARIPKGVLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPC 125 (499)
T ss_dssp SCCCCSEEEEECSSSSSHHHHHHHHHHHTT---------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSS-----SSSC
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHh-----cCCC
Confidence 456689999999999999999999999975 37899999999888888888888888887652 3789
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
|+||||||.+...+.... +.........+++++..|++..... .+.+.+ ++|.++.+|+
T Consensus 126 il~IDEId~l~~~r~~~~-~~~~~e~~~~l~~LL~~Ldg~~~~~---------~viviA-----------atn~p~~LD~ 184 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDT---------AIVVMA-----------ATNRPDILDP 184 (499)
T ss_dssp EEEEECGGGTCCCSSSST-TTSSHHHHHHHHHHHHHGGGCCSSC---------CCEEEE-----------CCSCGGGSCT
T ss_pred EEEEehHHHHHHhhccCc-CCCcHHHHHHHHHHHHHhcccccCc---------cEEEEE-----------ecCChhhcCc
Confidence 999999999987654311 1112334578899999998765321 122233 4555567999
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
++.| ||+..+.+++|+ .+.|.+|++.++... .+..+..+..+++.|+|.
T Consensus 185 aLlr~gRfdr~i~i~~Pd----------~~~R~~IL~~~~~~~-~l~~dv~l~~lA~~t~G~ 235 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPD----------VKGREQILRIHARGK-PLAEDVDLALLAKRTPGF 235 (499)
T ss_dssp TTSSTTSSCCEEECCCCC----------HHHHHHHHHHTTSSS-CCCCSSTTHHHHTTSCSC
T ss_pred ccccccccceEEecCCCC----------HHHHHHHHHHHHhcC-CCChHHHHHHHHHhcCCC
Confidence 9988 899999999999 999999999887643 333556789999999993
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.87 E-value=3.8e-25 Score=188.34 Aligned_cols=175 Identities=21% Similarity=0.309 Sum_probs=123.7
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
+..+++++||+||||||||++|+++|++++. +++.++++++...+.|.++..++.+|..+... .|+
T Consensus 40 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~-----~~~ 105 (268)
T 2r62_A 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV---------PFFSMGGSSFIEMFVGLGASRVRDLFETAKKQ-----APS 105 (268)
T ss_dssp SCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC---------CCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHS-----CSC
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCC---------CEEEechHHHHHhhcchHHHHHHHHHHHHHhc-----CCe
Confidence 3456889999999999999999999999864 67889999998888888877788889888753 789
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
||||||+|.+...+.............++++.++..+++..... ..+.+.+ ++|.++.+|+
T Consensus 106 vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--------~~v~vi~-----------ttn~~~~ld~ 166 (268)
T 2r62_A 106 IIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN--------APVIVLA-----------ATNRPEILDP 166 (268)
T ss_dssp EEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC--------SCCEEEE-----------CBSCCTTSCG
T ss_pred EEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC--------CCEEEEE-----------ecCCchhcCH
Confidence 99999999998765432111111122235667777776543211 1122222 4455567888
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
++.| ||+..+.+++|+ .++|..+++.++..... ..+..++.+++.+.|
T Consensus 167 ~l~r~~Rf~~~i~i~~p~----------~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~g 216 (268)
T 2r62_A 167 ALMRPGRFDRQVLVDKPD----------FNGRVEILKVHIKGVKL-ANDVNLQEVAKLTAG 216 (268)
T ss_dssp GGGSSSSSCCCCBCCCCC----------TTTHHHHHHHHTSSSCC-CSSCCTTTTTSSSCS
T ss_pred hHcCCCCCCeEEEecCcC----------HHHHHHHHHHHHhcCCC-CCccCHHHHHHHcCC
Confidence 9888 999999999999 89999999988865432 234456667776666
No 27
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.86 E-value=1.2e-22 Score=171.65 Aligned_cols=173 Identities=24% Similarity=0.379 Sum_probs=128.0
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+..++|++|+||||||||++++++|+.++ ..++.+++.++...+.+.....+..+|+.+.. ..|+
T Consensus 45 ~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~ 110 (254)
T 1ixz_A 45 GARIPKGVLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPC 110 (254)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT-----SSSE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhC---------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh-----cCCe
Confidence 345688999999999999999999999875 36799999888777777777778888887753 3789
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
++++||+|.+...+.... +.......++++.++..|++..... .+...+ ++|.++.+|+
T Consensus 111 i~~~Deid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~g~~~~~---------~~i~~a-----------~t~~p~~ld~ 169 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDT---------AIVVMA-----------ATNRPDILDP 169 (254)
T ss_dssp EEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTC---------CEEEEE-----------EESCGGGSCG
T ss_pred EEEehhhhhhhcccCccc-cccchHHHHHHHHHHHHHhCCCCCC---------CEEEEE-----------ccCCchhCCH
Confidence 999999999987654211 1112344567888888888654321 122222 4455577899
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
++.| ||+..+.++.|+ .++|.+|++.++... ....+..+..+++.++|
T Consensus 170 ~l~r~~rf~~~i~i~~p~----------~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~G 219 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPD----------VKGREQILRIHARGK-PLAEDVDLALLAKRTPG 219 (254)
T ss_dssp GGGSTTSSCEEEECCSCC----------HHHHHHHHHHHHTTS-CBCTTCCHHHHHHTCTT
T ss_pred HHcCCCcCCeEEeeCCcC----------HHHHHHHHHHHHcCC-CCCcccCHHHHHHHcCC
Confidence 9988 899999999999 999999999887644 33345668899999998
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.84 E-value=1.6e-21 Score=167.04 Aligned_cols=173 Identities=24% Similarity=0.378 Sum_probs=126.7
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
+..+++++|+||||||||++++++|+.++ ..++.+++.++...+.+.....+..+|+.+.. ..|++
T Consensus 70 ~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i 135 (278)
T 1iy2_A 70 ARIPKGVLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCI 135 (278)
T ss_dssp CCCCCEEEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT-----SCSEE
T ss_pred CCCCCeEEEECCCcChHHHHHHHHHHHcC---------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh-----cCCcE
Confidence 45688899999999999999999999875 36899999888777777777778888988763 37899
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
+++||+|.+...+.... ..........++.++..|++.... +.+...+ +++.++.+|++
T Consensus 136 ~~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~lsgg~~~---------~~~i~~a-----------~t~~p~~ld~~ 194 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKD---------TAIVVMA-----------ATNRPDILDPA 194 (278)
T ss_dssp EEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTT---------CCEEEEE-----------EESCTTSSCHH
T ss_pred EehhhhHhhhccccccc-CCcchHHHHHHHHHHHHHhCCCCC---------CCEEEEE-----------ecCCchhCCHh
Confidence 99999999976553211 111223456778888887765321 1122222 34445668999
Q ss_pred Hhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 173 VLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 173 i~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
+.| ||+..+.+++|+ .++|.++++.++... ....+..+..+++.++|+
T Consensus 195 l~r~~rf~~~i~i~~p~----------~~~r~~il~~~~~~~-~~~~~~~~~~la~~~~G~ 244 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPD----------VKGREQILRIHARGK-PLAEDVDLALLAKRTPGF 244 (278)
T ss_dssp HHSTTSSCCEEECCCCC----------HHHHHHHHHHHHTTS-CBCTTCCHHHHHHTCTTC
T ss_pred HcCCCcCCeEEEeCCcC----------HHHHHHHHHHHHccC-CCCcccCHHHHHHHcCCC
Confidence 988 899999999999 999999999887643 333456688999999993
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.81 E-value=1.1e-20 Score=183.57 Aligned_cols=171 Identities=23% Similarity=0.354 Sum_probs=137.7
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+.++.++||+||||||||++|+++|++++. .++.+++.++.+.+.|+.+..++.+|+.+... .|+
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~-----~p~ 299 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA---------FFFLINGPEIMSKLAGESESNLRKAFEEAEKN-----APA 299 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---------EEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHH-----CSE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---------cEEEEEchHhhhhhhhhHHHHHHHHHHHHHhc-----CCc
Confidence 4566999999999999999999999999854 78999999999999999999999999999865 799
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
++||||+|.+...+... ......++.+.+++.+++..... .+.+.+ ++|.++.+|+
T Consensus 300 il~iDEid~l~~~~~~~----~~~~~~~~~~~Ll~ll~g~~~~~---------~v~vI~-----------atn~~~~ld~ 355 (806)
T 1ypw_A 300 IIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRA---------HVIVMA-----------ATNRPNSIDP 355 (806)
T ss_dssp EEEEESGGGTSCTTSCC----CSHHHHHHHHHHHHHHHSSCTTS---------CCEEEE-----------ECSCTTTSCT
T ss_pred EEEeccHHHhhhccccc----cchHHHHHHHHHHHHhhhhcccc---------cEEEec-----------ccCCchhcCH
Confidence 99999999998876432 23344678899999999875432 111222 4455567899
Q ss_pred HHhh--HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCC
Q psy3997 172 TVLD--LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 172 ai~r--Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~ 231 (256)
++.+ ||+..+.++.|+ .+.|.++++.++...... .+..+..++..++|.
T Consensus 356 al~r~gRf~~~i~i~~p~----------~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 406 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPD----------ATGRLEILQIHTKNMKLA-DDVDLEQVANETHGH 406 (806)
T ss_dssp TTTSTTSSCEEECCCCCC----------HHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSC
T ss_pred HHhcccccccccccCCCC----------HHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCc
Confidence 9888 999999999999 999999999887765544 556788899988883
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=1.6e-18 Score=149.99 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=121.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.++.++||+||||||||++|+++|+.++... .....++++++++++...++|.....+..+|..+ .++||
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--------~~~vl 134 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG--YVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA--------MGGVL 134 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT--SSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH--------TTSEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc--------CCCEE
Confidence 3456799999999999999999999986521 1124479999999999999998888887777664 35699
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHH
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTV 173 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai 173 (256)
||||+|.++..+.. ......+++.|+..|+.... .+.++. .++.- ..+....+++++
T Consensus 135 ~iDEid~l~~~~~~------~~~~~~~~~~Ll~~l~~~~~-----------~~~~i~-----~~~~~-~~~~~~~~~~~l 191 (309)
T 3syl_A 135 FIDEAYYLYRPDNE------RDYGQEAIEILLQVMENNRD-----------DLVVIL-----AGYAD-RMENFFQSNPGF 191 (309)
T ss_dssp EEETGGGSCCCC---------CCTHHHHHHHHHHHHHCTT-----------TCEEEE-----EECHH-HHHHHHHHSTTH
T ss_pred EEEChhhhccCCCc------ccccHHHHHHHHHHHhcCCC-----------CEEEEE-----eCChH-HHHHHHhhCHHH
Confidence 99999999865432 12235688999999886421 111111 11110 113334567899
Q ss_pred hhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHh
Q psy3997 174 LDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQS 227 (256)
Q Consensus 174 ~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~ 227 (256)
++||...+.++.|+ .+.+..+++.++......-.+..++.+++.
T Consensus 192 ~~R~~~~i~~~~~~----------~~~~~~il~~~l~~~~~~~~~~~~~~l~~~ 235 (309)
T 3syl_A 192 RSRIAHHIEFPDYS----------DEELFEIAGHMLDDQNYQMTPEAETALRAY 235 (309)
T ss_dssp HHHEEEEEEECCCC----------HHHHHHHHHHHHHHTTCEECHHHHHHHHHH
T ss_pred HHhCCeEEEcCCcC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999 899999998888654433244666666664
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.75 E-value=7.4e-22 Score=180.57 Aligned_cols=86 Identities=27% Similarity=0.334 Sum_probs=70.4
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
..+++++|||||||||||++|+++|++++. ..+|+.++++++.++++|+++. ++++|..|.. .....|+|
T Consensus 60 ~~~~~~iLl~GppGtGKT~la~ala~~l~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~--~~~~~~~i 129 (456)
T 2c9o_A 60 KMAGRAVLLAGPPGTGKTALALAIAQELGS-------KVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG--LRIKETKE 129 (456)
T ss_dssp CCTTCEEEEECCTTSSHHHHHHHHHHHHCT-------TSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE--EEEEEEEE
T ss_pred CCCCCeEEEECCCcCCHHHHHHHHHHHhCC-------CceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh--hhhcCCcE
Confidence 345789999999999999999999999974 2589999999999999999987 8899988721 01348999
Q ss_pred EEeCcchhhhhhhhcc
Q psy3997 93 LLIDEIESLTRARESV 108 (256)
Q Consensus 93 i~iDEid~l~~~r~~~ 108 (256)
|||||+|.+++.|...
T Consensus 130 l~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 130 VYEGEVTELTPCETEN 145 (456)
T ss_dssp EEEEEEEEEEEC----
T ss_pred EEEechhhcccccCCC
Confidence 9999999999887653
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=2.5e-17 Score=140.39 Aligned_cols=162 Identities=23% Similarity=0.324 Sum_probs=105.2
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchh----HHHHHHHHHHHHHHHhcC
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG----KLVQKMFNKIKEAVEYEE 88 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~----~~~~~~f~~a~~~~~~~~ 88 (256)
..+++++||+||||||||++|+++|+.++. +|+.+++.+. ++|... ..++.+|..+. ..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~---------~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~-----~~ 123 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF---------PFIKICSPDK---MIGFSETAKCQAMKKIFDDAY-----KS 123 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC---------SEEEEECGGG---CTTCCHHHHHHHHHHHHHHHH-----TS
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEeCHHH---hcCCchHHHHHHHHHHHHHHH-----hc
Confidence 456789999999999999999999999754 6788887653 333332 45666776665 34
Q ss_pred CeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHH
Q psy3997 89 SLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIA 168 (256)
Q Consensus 89 ~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ 168 (256)
.+++|||||+|.++..+... ......+++.|...+++..... ..+.+.+ ++|.++.
T Consensus 124 ~~~vl~iDEid~l~~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~--------~~~~ii~-----------ttn~~~~ 179 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIG-----PRFSNLVLQALLVLLKKAPPQG--------RKLLIIG-----------TTSRKDV 179 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTT-----TBCCHHHHHHHHHHTTCCCSTT--------CEEEEEE-----------EESCHHH
T ss_pred CCcEEEEEChhhhhccCCCC-----hhHHHHHHHHHHHHhcCccCCC--------CCEEEEE-----------ecCChhh
Confidence 78999999999997654321 1122456666666655432111 1222333 5666778
Q ss_pred HHH-HHhhHhhhhhccCCCCCCCCcchhhhh-hhHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q psy3997 169 LEK-TVLDLLVEEKSLPLKRNTEVPNTYLHS-NQRIHIYLMFCGTSYPLQHSKHFTELVQSHPG 230 (256)
Q Consensus 169 ld~-ai~rRf~~~i~~~~p~~~e~~~~~~~~-~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g 230 (256)
+++ .+.+||...+.+|.++ + +....++... ... .+..++.+++.+.|
T Consensus 180 l~~~~l~~rf~~~i~~p~l~----------~r~~i~~i~~~~----~~~-~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 180 LQEMEMLNAFSTTIHVPNIA----------TGEQLLEALELL----GNF-KDKERTTIAQQVKG 228 (272)
T ss_dssp HHHTTCTTTSSEEEECCCEE----------EHHHHHHHHHHH----TCS-CHHHHHHHHHHHTT
T ss_pred cchhhhhcccceEEcCCCcc----------HHHHHHHHHHhc----CCC-CHHHHHHHHHHhcC
Confidence 888 6788998888776666 3 3333333321 112 45778888888877
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=1e-17 Score=144.55 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=111.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch-hhccch-hHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS-KYFSES-GKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
.+.++||+||||||||++|+++|+.++. ++++++++++.. .++|.. +..+++++..+...+.....++|
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA---------PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGI 119 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC---------CEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC---------CEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCE
Confidence 4789999999999999999999999854 789999988765 455543 34566666543111111124789
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
|||||+|.+...... .........+.+.|+..|++........ ......+.+.+ .++. .++.+..++++
T Consensus 120 l~iDEi~~l~~~~~~---~~~~~~~~~~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~-----~~~~--~~~~~~~l~~~ 188 (310)
T 1ofh_A 120 VFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIA-----SGAF--QVARPSDLIPE 188 (310)
T ss_dssp EEEECGGGGSCCSSC---CSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEE-----EECC--SSSCGGGSCHH
T ss_pred EEEEChhhcCccccc---cccchhHHHHHHHHHHHhcCCeEecccc-cccCCcEEEEE-----cCCc--ccCCcccCCHH
Confidence 999999999765431 1111112235788888888642110000 00001112222 1100 01223467889
Q ss_pred HhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc-------------CCCcccccchhHHHHHHhC
Q psy3997 173 VLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC-------------GTSYPLQHSKHFTELVQSH 228 (256)
Q Consensus 173 i~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~-------------~~~~~~~~~~~~~~l~~~t 228 (256)
+.+||...+.+++|+ .+++.++++... ......-.+..++.|++.+
T Consensus 189 l~~R~~~~i~~~~~~----------~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 247 (310)
T 1ofh_A 189 LQGRLPIRVELTALS----------AADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 247 (310)
T ss_dssp HHHTCCEEEECCCCC----------HHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHH
T ss_pred HHhhCCceEEcCCcC----------HHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHh
Confidence 999999889999999 777777766211 1111112446777787776
No 34
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.67 E-value=3.4e-17 Score=145.30 Aligned_cols=107 Identities=26% Similarity=0.408 Sum_probs=76.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh-hccch-hHHHHHHHHHHHHHHHhcCCeE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-YFSES-GKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~-~~g~~-~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.++.++||+||||||||++|+++|+.++. +|+.++++++... ++|.. ...++.+|..+...+. ...++
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~---------~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 118 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDV---------PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ-KAQRG 118 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTC---------CEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHH-HHHHC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCC---------CEEEechHHhcccccccccHHHHHHHHHHHhhhhHH-hcCCc
Confidence 35789999999999999999999999864 7899999988754 77765 5566777766521111 12578
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~ 131 (256)
||||||+|.+...+.....+. .....++.+.|++.|++.
T Consensus 119 vl~lDEid~l~~~~~~~~~~~-~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 119 IVYIDQIDKISRKSDNPSITR-DVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp EEEEECHHHHCCCSSCC---C-HHHHHHHHHHHHHHHHCC
T ss_pred EEEEeChhhhccccccccccc-ccchHHHHHHHHHHhcCc
Confidence 999999999987654322111 112234899999999954
No 35
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.67 E-value=2.3e-17 Score=149.22 Aligned_cols=128 Identities=17% Similarity=0.256 Sum_probs=57.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch-hhccc-hhHHHHHHHHHHHHHHHhcCCeEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS-KYFSE-SGKLVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~-~~~g~-~~~~~~~~f~~a~~~~~~~~~p~I 92 (256)
+++++||+||||||||++|+++|+.++. +|+.++++.+.. .|+|. .+..++++|..+...
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~---------~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------- 110 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA---------PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------- 110 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC---------CEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH---------
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCC---------CceeecchhhcccceeeccHHHHHHHHHHHHHhc---------
Confidence 5789999999999999999999999865 789999998887 58885 788899999998764
Q ss_pred EEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 93 LLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 93 i~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
+++||++.+..... .....+++++|+.+||++..... + .+ ..||.++.||+|
T Consensus 111 ~~~De~d~~~~~~~-------~~~e~rvl~~LL~~~dg~~~~~~---------v--~a----------~~TN~~~~ld~a 162 (444)
T 1g41_A 111 VRQQEIAKNRARAE-------DVAEERILDALLPPAKNQWGEVE---------N--HD----------SHSSTRQAFRKK 162 (444)
T ss_dssp HHHHHHHSCC----------------------------------------------------------------------
T ss_pred chhhhhhhhhccch-------hhHHHHHHHHHHHHhhccccccc---------c--cc----------ccccCHHHHHHH
Confidence 24788877643221 22336899999999998854211 0 11 128999999999
Q ss_pred Hhh--HhhhhhccCCCCC
Q psy3997 173 VLD--LLVEEKSLPLKRN 188 (256)
Q Consensus 173 i~r--Rf~~~i~~~~p~~ 188 (256)
++| ||+..+++++|+.
T Consensus 163 L~rggr~D~~i~i~lP~~ 180 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAG 180 (444)
T ss_dssp ------------------
T ss_pred HHcCCCcceEEEEcCCCC
Confidence 998 9999999999994
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.66 E-value=5.3e-17 Score=143.71 Aligned_cols=175 Identities=21% Similarity=0.188 Sum_probs=110.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhcc---------------------------
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFS--------------------------- 67 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g--------------------------- 67 (256)
+++++||+||||||||++|+++|+.++. ..+|+.+++..+...+.+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP-------DTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSL 141 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS-------SCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc-------cCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccH
Confidence 4689999999999999999999999963 346778877654333222
Q ss_pred ----------------------chhHHHHHHHHHHHHHHHhcCC----eEEEEeCcchhhhhhhhcccCCCCCCcHHHHH
Q psy3997 68 ----------------------ESGKLVQKMFNKIKEAVEYEES----LVCLLIDEIESLTRARESVMSGTEPSDGVRVV 121 (256)
Q Consensus 68 ----------------------~~~~~~~~~f~~a~~~~~~~~~----p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~ 121 (256)
.....+++.+..+......... |+||||||+|.+.. ...
T Consensus 142 ~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~---------------~~~ 206 (368)
T 3uk6_A 142 HEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI---------------ESF 206 (368)
T ss_dssp HHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH---------------HHH
T ss_pred hhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh---------------HHH
Confidence 2234455666555443222222 67999999999853 356
Q ss_pred HHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhH
Q psy3997 122 NAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQR 201 (256)
Q Consensus 122 ~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R 201 (256)
+.|++.++.... .+.+.+.......-..+..|.+..+++++.+||.. +.+++|+ .+++
T Consensus 207 ~~L~~~le~~~~-----------~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~----------~~e~ 264 (368)
T 3uk6_A 207 SFLNRALESDMA-----------PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYS----------EKDT 264 (368)
T ss_dssp HHHHHHTTCTTC-----------CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCC----------HHHH
T ss_pred HHHHHHhhCcCC-----------CeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCC----------HHHH
Confidence 777777754321 11110100000000000112335678899999987 7999999 8888
Q ss_pred HHHHHHhcCCCcccccchhHHHHHHhCC-CCcc
Q psy3997 202 IHIYLMFCGTSYPLQHSKHFTELVQSHP-GRCK 233 (256)
Q Consensus 202 ~~i~~~~~~~~~~~~~~~~~~~l~~~t~-g~~~ 233 (256)
..+++..+......-.+..++.+++.+. |+.+
T Consensus 265 ~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r 297 (368)
T 3uk6_A 265 KQILRIRCEEEDVEMSEDAYTVLTRIGLETSLR 297 (368)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHH
Confidence 8888877754433335578899999988 7654
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.64 E-value=1.1e-16 Score=140.22 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=108.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
++.++||+||||||||++|+++|++++. +|+.+++..+. ....+...+.. ...+.+||
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~---------~~~~~~~~~~~------~~~~~~~~~~~-------~~~~~vl~ 111 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSA---------NIKTTAAPMIE------KSGDLAAILTN-------LSEGDILF 111 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTC---------CEEEEEGGGCC------SHHHHHHHHHT-------CCTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---------CeEEecchhcc------chhHHHHHHHh-------ccCCCEEE
Confidence 4678999999999999999999999864 67889887652 12223333322 34678999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCch-------hhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGR-------TLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~-------~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
||||+.+.. ...+.|+..|+.....-.+-.+. ....+.+++ ++|...
T Consensus 112 lDEi~~l~~---------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----------atn~~~ 165 (338)
T 3pfi_A 112 IDEIHRLSP---------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG-----------ATTRAG 165 (338)
T ss_dssp EETGGGCCH---------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE-----------EESCGG
T ss_pred EechhhcCH---------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE-----------eCCCcc
Confidence 999999853 25677777776543111000000 000122222 333345
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.+++++.+||+..+.+++|+ .+++..++..++......-.+..++.|++.++|+.+
T Consensus 166 ~l~~~L~~R~~~~i~l~~~~----------~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r 221 (338)
T 3pfi_A 166 MLSNPLRDRFGMQFRLEFYK----------DSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR 221 (338)
T ss_dssp GSCHHHHTTCSEEEECCCCC----------HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHH
T ss_pred ccCHHHHhhcCEEeeCCCcC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHH
Confidence 58889999999999999999 888888888777654433355788999999999764
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=8.5e-16 Score=122.49 Aligned_cols=87 Identities=25% Similarity=0.382 Sum_probs=59.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh-cccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ-SKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~-~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+++++|+||||||||++++++++.+..... ......+++++++..+. ..+.+.....+++++..+.. ...+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 117 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK----QEGNV 117 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH----STTTE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh----cCCCe
Confidence 3678999999999999999999999853100 00013578888887765 23344445556666665442 45788
Q ss_pred EEEeCcchhhhhhh
Q psy3997 92 CLLIDEIESLTRAR 105 (256)
Q Consensus 92 Ii~iDEid~l~~~r 105 (256)
||+|||+|.+...+
T Consensus 118 vl~iDe~~~l~~~~ 131 (195)
T 1jbk_A 118 ILFIDELHTMVGAG 131 (195)
T ss_dssp EEEEETGGGGTT--
T ss_pred EEEEeCHHHHhccC
Confidence 99999999997654
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=8.6e-16 Score=134.00 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=103.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+.+++|+||||||||++++++++.+.. .+.+++++++.++...+.+.........|.... ..+.+|||
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vL~i 104 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK------RGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY------KSVDLLLL 104 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH------TTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH------HTCSEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh------cCCCEEEE
Confidence 578999999999999999999999843 135789999987755543332211112222111 15789999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||++.+...+. ....++..++....... .+ +.+ .++.. .. ...+++++.+
T Consensus 105 DEi~~l~~~~~-------------~~~~l~~~l~~~~~~~~--------~i-ii~-----~~~~~--~~-l~~l~~~L~s 154 (324)
T 1l8q_A 105 DDVQFLSGKER-------------TQIEFFHIFNTLYLLEK--------QI-ILA-----SDRHP--QK-LDGVSDRLVS 154 (324)
T ss_dssp ECGGGGTTCHH-------------HHHHHHHHHHHHHHTTC--------EE-EEE-----ESSCG--GG-CTTSCHHHHH
T ss_pred cCcccccCChH-------------HHHHHHHHHHHHHHCCC--------eE-EEE-----ecCCh--HH-HHHhhhHhhh
Confidence 99999865321 23344444444322110 11 111 11111 00 0146788999
Q ss_pred Hhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 176 LLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
||. ..+.+++ + .++|..+++..+......-.+..++.|++.+ |+++.
T Consensus 155 R~~~~~~i~l~~-~----------~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 155 RFEGGILVEIEL-D----------NKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHTSEEEECCC-C----------HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHH
T ss_pred cccCceEEEeCC-C----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHH
Confidence 997 5677888 8 8888899888875443333557889999999 87754
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.58 E-value=1.6e-16 Score=148.07 Aligned_cols=147 Identities=22% Similarity=0.291 Sum_probs=88.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch---------hhccchhHHHHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS---------KYFSESGKLVQKMFNKIKEAVE 85 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~---------~~~g~~~~~~~~~f~~a~~~~~ 85 (256)
++..++|+||||||||++|+++|+.++. ++..+++..... .++|.....+...|..+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~---------~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~--- 174 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR---------KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGK--- 174 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC---------EEEEECCCC--------------------CHHHHHHTTCS---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC---------CeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhc---
Confidence 3668999999999999999999999864 678888765432 3445444445555554432
Q ss_pred hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCc--h--hhhcccchhhHhhhhcCccC
Q psy3997 86 YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSG--R--TLRKIPFLTFVKYISNNSVS 161 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g--~--~~~~~~~~~~~~~~~~~~i~ 161 (256)
..| |+||||+|.+...++. ...+.|++.||..........+ . ....+.+. .
T Consensus 175 --~~~-vl~lDEid~l~~~~~~-----------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI-----------~ 229 (543)
T 3m6a_A 175 --LNP-VFLLDEIDKMSSDFRG-----------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI-----------A 229 (543)
T ss_dssp --SSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE-----------E
T ss_pred --cCC-EEEEhhhhhhhhhhcc-----------CHHHHHHHHHhhhhcceeecccCCeeecccceEEE-----------e
Confidence 244 9999999999765431 1456677777654322111000 0 00112222 2
Q ss_pred HHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 162 MENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 162 ~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
++|.++.+++++++||. .+.++.|+ .+.|.+|+..++
T Consensus 230 ttN~~~~l~~aL~~R~~-vi~~~~~~----------~~e~~~Il~~~l 266 (543)
T 3m6a_A 230 TANNLATIPGPLRDRME-IINIAGYT----------EIEKLEIVKDHL 266 (543)
T ss_dssp ECSSTTTSCHHHHHHEE-EEECCCCC----------HHHHHHHHHHTH
T ss_pred ccCccccCCHHHHhhcc-eeeeCCCC----------HHHHHHHHHHHH
Confidence 44555789999999995 78999999 777888877765
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.58 E-value=2.1e-15 Score=131.36 Aligned_cols=158 Identities=15% Similarity=0.212 Sum_probs=102.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
.|..+|++||||||||++++++|++++. +++++++++.. ...+++.+............+.||+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~---------~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vli 110 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNA---------DMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIV 110 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTE---------EEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCC---------CEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEE
Confidence 4567888999999999999999999854 78999987632 2334444443332211123688999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||+|.+... ...+.|+..++..... ..+.. ++|.+..+++++.
T Consensus 111 iDEi~~l~~~--------------~~~~~L~~~le~~~~~-----------~~iI~-----------~~n~~~~l~~~l~ 154 (324)
T 3u61_B 111 IDEFDRSGLA--------------ESQRHLRSFMEAYSSN-----------CSIII-----------TANNIDGIIKPLQ 154 (324)
T ss_dssp EESCCCGGGH--------------HHHHHHHHHHHHHGGG-----------CEEEE-----------EESSGGGSCTTHH
T ss_pred EECCcccCcH--------------HHHHHHHHHHHhCCCC-----------cEEEE-----------EeCCccccCHHHH
Confidence 9999999621 2456677777754321 11111 2333456888999
Q ss_pred hHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHh-------cCCCcccccc-hhHHHHHHhCCCCcccc
Q psy3997 175 DLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMF-------CGTSYPLQHS-KHFTELVQSHPGRCKVT 235 (256)
Q Consensus 175 rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~-------~~~~~~~~~~-~~~~~l~~~t~g~~~~~ 235 (256)
+||. .+.++.|+ +++|..+++.+ +......-.+ ..++.+++.++|+++..
T Consensus 155 sR~~-~i~~~~~~----------~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 155 SRCR-VITFGQPT----------DEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHSE-EEECCCCC----------HHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHH
T ss_pred hhCc-EEEeCCCC----------HHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHH
Confidence 9996 68999999 66654443322 2222222245 78999999999987653
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.57 E-value=1.1e-15 Score=138.95 Aligned_cols=170 Identities=14% Similarity=0.132 Sum_probs=106.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcC-CeEEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEE-SLVCLL 94 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~-~p~Ii~ 94 (256)
+.+++||||||||||++++++|+.+... .+...++++++.++...+.+.........|. .... .+.|||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~----~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vL~ 199 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITSEKFLNDLVDSMKEGKLNEFR------EKYRKKVDILL 199 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH----CCSSCEEEEEHHHHHHHHHHHHHTTCHHHHH------HHHTTTCSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHHHHHHHHHHHHHcccHHHHH------HHhcCCCCEEE
Confidence 5689999999999999999999998542 1356789999887654433221111011111 1123 688999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||++.+...+ .....++..++.+.... . .+.+ + +.+... . ...+++.+.
T Consensus 200 IDEi~~l~~~~-------------~~q~~l~~~l~~l~~~~--~------~iIi-t-----t~~~~~--~-l~~l~~~L~ 249 (440)
T 2z4s_A 200 IDDVQFLIGKT-------------GVQTELFHTFNELHDSG--K------QIVI-C-----SDREPQ--K-LSEFQDRLV 249 (440)
T ss_dssp EECGGGGSSCH-------------HHHHHHHHHHHHHHTTT--C------EEEE-E-----ESSCGG--G-CSSCCHHHH
T ss_pred EeCcccccCCh-------------HHHHHHHHHHHHHHHCC--C------eEEE-E-----ECCCHH--H-HHHHHHHHH
Confidence 99999986532 12344555555443211 0 1111 1 111110 0 012678889
Q ss_pred hHhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 175 DLLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 175 rRf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+||. ..+.+++|+ .+.|..++...+......-.++.++.|++.++|+++..
T Consensus 250 sR~~~g~~i~l~~p~----------~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPD----------EETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHSSBCCBCCCCC----------HHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHH
T ss_pred hhccCCeEEEeCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 9997 788999999 88899999887754333224577899999999987543
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.57 E-value=4e-15 Score=118.29 Aligned_cols=138 Identities=16% Similarity=0.235 Sum_probs=83.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh-cccccceEEEEeccccchh--hccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ-SKYKITEFIEINSHSLFSK--YFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~-~~~~~~~~~~v~~~~l~~~--~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+++++|+||||||||++++++|+.+..... .......++++++..+... +.+.....+++++..+.. ...+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 117 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQD----AEGQV 117 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHH----TTTSE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHh----cCCce
Confidence 3678999999999999999999999742100 0001357788887766432 334444456666655543 34688
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHH----
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI---- 167 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~---- 167 (256)
+|+|||+|.+...+...... ..+.+.+...++.- .+.+++ +++.+.
T Consensus 118 vl~iDe~~~l~~~~~~~~~~------~~~~~~l~~~~~~~-------------~~~ii~-----------~~~~~~~~~~ 167 (187)
T 2p65_A 118 VMFIDEIHTVVGAGAVAEGA------LDAGNILKPMLARG-------------ELRCIG-----------ATTVSEYRQF 167 (187)
T ss_dssp EEEETTGGGGSSSSSSCTTS------CCTHHHHHHHHHTT-------------CSCEEE-----------EECHHHHHHH
T ss_pred EEEEeCHHHhcccccccccc------hHHHHHHHHHHhcC-------------CeeEEE-----------ecCHHHHHHH
Confidence 99999999997554311101 11344444444321 111222 222222
Q ss_pred -HHHHHHhhHhhhhhccCCCC
Q psy3997 168 -ALEKTVLDLLVEEKSLPLKR 187 (256)
Q Consensus 168 -~ld~ai~rRf~~~i~~~~p~ 187 (256)
.+|+++.+||.. +.++.|+
T Consensus 168 ~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 168 IEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp TTTCHHHHHHEEE-EECCSCC
T ss_pred HhccHHHHHhcCc-ccCCCCC
Confidence 478999999995 8888875
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.55 E-value=3.1e-15 Score=136.21 Aligned_cols=153 Identities=18% Similarity=0.266 Sum_probs=103.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeC
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLID 96 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iD 96 (256)
.++||+||||||||++|+++|+.++. .|+.+++.. .+...++.++..+..... ...+.|||||
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~---------~f~~l~a~~-------~~~~~ir~~~~~a~~~~~-~~~~~iLfID 113 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANA---------DVERISAVT-------SGVKEIREAIERARQNRN-AGRRTILFVD 113 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC---------EEEEEETTT-------CCHHHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC---------CeEEEEecc-------CCHHHHHHHHHHHHHhhh-cCCCcEEEEe
Confidence 57999999999999999999999854 778888643 234457778877765433 4568899999
Q ss_pred cchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhH
Q psy3997 97 EIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDL 176 (256)
Q Consensus 97 Eid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rR 176 (256)
|||.+... ..+.|+..++.- . +.+++ .+ +.|....+++++.+|
T Consensus 114 EI~~l~~~---------------~q~~LL~~le~~---~----------v~lI~----at-----t~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 114 EVHRFNKS---------------QQDAFLPHIEDG---T----------ITFIG----AT-----TENPSFELNSALLSR 156 (447)
T ss_dssp TTTCC---------------------CCHHHHHTT---S----------CEEEE----EE-----SSCGGGSSCHHHHTT
T ss_pred ChhhhCHH---------------HHHHHHHHHhcC---c----------eEEEe----cC-----CCCcccccCHHHhCc
Confidence 99998543 234466666641 1 11111 01 112234577899999
Q ss_pred hhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC-------CcccccchhHHHHHHhCCCCccc
Q psy3997 177 LVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT-------SYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 177 f~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~-------~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+. .+.+++|+ .+.+..++..++.. ....-.+..++.|++.++|+++.
T Consensus 157 ~~-v~~l~~l~----------~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ 210 (447)
T 3pvs_A 157 AR-VYLLKSLS----------TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARR 210 (447)
T ss_dssp EE-EEECCCCC----------HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHH
T ss_pred ee-EEeeCCcC----------HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHH
Confidence 87 56688888 77778888877754 22222457889999999997753
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=6.6e-15 Score=121.92 Aligned_cols=161 Identities=11% Similarity=0.046 Sum_probs=103.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
.+++++|+||||||||++++++++++... ...++++++.++...+. +.+. ....+.+|+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~------~~~~~~~~~~~~~~~~~--------~~~~-------~~~~~~vli 109 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL------ERRSFYIPLGIHASIST--------ALLE-------GLEQFDLIC 109 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEEGGGGGGSCG--------GGGT-------TGGGSSEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEHHHHHHHHH--------HHHH-------hccCCCEEE
Confidence 46889999999999999999999998752 35788888877654321 1111 123678999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHh
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVL 174 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~ 174 (256)
|||++.+.... .....++..++........ .+.+.+ +...-.. ..+++.+.
T Consensus 110 iDe~~~~~~~~-------------~~~~~l~~~l~~~~~~~~~-------~ii~~~-----~~~~~~~----~~~~~~l~ 160 (242)
T 3bos_A 110 IDDVDAVAGHP-------------LWEEAIFDLYNRVAEQKRG-------SLIVSA-----SASPMEA----GFVLPDLV 160 (242)
T ss_dssp EETGGGGTTCH-------------HHHHHHHHHHHHHHHHCSC-------EEEEEE-----SSCTTTT----TCCCHHHH
T ss_pred EeccccccCCH-------------HHHHHHHHHHHHHHHcCCC-------eEEEEc-----CCCHHHH----HHhhhhhh
Confidence 99999985432 1234455555544322110 011111 1100000 12346778
Q ss_pred hHhh--hhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 175 DLLV--EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 175 rRf~--~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+||. ..+.+++|+ .+++.+++..++......-.+..++.+++.++|+++..
T Consensus 161 ~r~~~~~~i~l~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l 213 (242)
T 3bos_A 161 SRMHWGLTYQLQPMM----------DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTL 213 (242)
T ss_dssp HHHHHSEEEECCCCC----------GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHH
T ss_pred hHhhcCceEEeCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Confidence 8887 889999999 88888888887754333335588999999999977543
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.3e-15 Score=141.28 Aligned_cols=167 Identities=18% Similarity=0.254 Sum_probs=101.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhH-------HHHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGK-------LVQKMFNKIKEAVEY 86 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~-------~~~~~f~~a~~~~~~ 86 (256)
++++++||+||||||||++|+++|++++. .++++++++........... .+..+|..+......
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l~~---------~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 145 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQELGY---------DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNL 145 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHTTC---------EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC---------CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhc
Confidence 35789999999999999999999999864 78999998876543221110 022233332111112
Q ss_pred cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHH
Q psy3997 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFL 166 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~ 166 (256)
...+.||||||+|.+..... ..++.++..++... ..+.+.+ +....
T Consensus 146 ~~~~~vliIDEid~l~~~~~------------~~l~~L~~~l~~~~-----------~~iIli~-----~~~~~------ 191 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGGDR------------GGVGQLAQFCRKTS-----------TPLILIC-----NERNL------ 191 (516)
T ss_dssp STTSEEEEECSGGGCCTTST------------THHHHHHHHHHHCS-----------SCEEEEE-----SCTTS------
T ss_pred cCCCeEEEEECCCccchhhH------------HHHHHHHHHHHhcC-----------CCEEEEE-----cCCCC------
Confidence 35789999999999965321 13455666655321 1122221 11000
Q ss_pred HHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 167 IALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 167 ~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
..+. .+ +|+...+.++.|+ .+++..++...+......-.+..++.|++.++|+++..
T Consensus 192 ~~l~-~l-~~r~~~i~f~~~~----------~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~ 248 (516)
T 1sxj_A 192 PKMR-PF-DRVCLDIQFRRPD----------ANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQV 248 (516)
T ss_dssp STTG-GG-TTTSEEEECCCCC----------HHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHH
T ss_pred ccch-hh-HhceEEEEeCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Confidence 1121 22 3444578899999 77777777766644333225577999999999987653
No 47
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.54 E-value=1.6e-14 Score=117.68 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHH-HhcCCeEEEEe
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAV-EYEESLVCLLI 95 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~~~~p~Ii~i 95 (256)
.+++|+||||||||++++++++++..+. ....++.++++.... ...+...+....... .....+.+|+|
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vlii 108 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGEN----WRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFL 108 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGG----GGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccc----cccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEE
Confidence 4599999999999999999999875421 234678888765322 112222222211100 00246889999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.+... ..+.++..++.... ...+.. +++.+..+++++.+
T Consensus 109 De~~~l~~~---------------~~~~l~~~l~~~~~-----------~~~~i~-----------~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 109 DEADALTAD---------------AQAALRRTMEMYSK-----------SCRFIL-----------SCNYVSRIIEPIQS 151 (226)
T ss_dssp ETGGGSCHH---------------HHHHHHHHHHHTTT-----------TEEEEE-----------EESCGGGSCHHHHT
T ss_pred eChhhcCHH---------------HHHHHHHHHHhcCC-----------CCeEEE-----------EeCChhhcCHHHHH
Confidence 999998543 34556666654321 111111 12222456788889
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
||. .+.+++|+ .++..+++...+......-.+..++.+++.++|+.+.
T Consensus 152 r~~-~i~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~ 199 (226)
T 2chg_A 152 RCA-VFRFKPVP----------KEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRK 199 (226)
T ss_dssp TSE-EEECCCCC----------HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHH
T ss_pred hCc-eeecCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 988 78888888 7777777776664332222457888999999998753
No 48
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.7e-14 Score=125.41 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=94.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhc-ccccceEEEEeccccchh----------hc------cchhHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS-KYKITEFIEINSHSLFSK----------YF------SESGKLVQKMF 77 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~-~~~~~~~~~v~~~~l~~~----------~~------g~~~~~~~~~f 77 (256)
.|.+++++||||||||++++++++++...... ..+...+++++|..+.+. +. +.....++++|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 58899999999999999999999999642211 112457899999765433 11 22344566666
Q ss_pred HHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhc
Q psy3997 78 NKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISN 157 (256)
Q Consensus 78 ~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~ 157 (256)
+.+.. ....+.||+|||+|.|. . ..++..++++.+. .. .++.+++ ..
T Consensus 124 ~~~~~---~~~~~~ii~lDE~d~l~-~-------------q~~L~~l~~~~~~-~~----------s~~~vI~-----i~ 170 (318)
T 3te6_A 124 TNVPK---AKKRKTLILIQNPENLL-S-------------EKILQYFEKWISS-KN----------SKLSIIC-----VG 170 (318)
T ss_dssp HHSCG---GGSCEEEEEEECCSSSC-C-------------THHHHHHHHHHHC-SS----------CCEEEEE-----EC
T ss_pred HHhhh---ccCCceEEEEecHHHhh-c-------------chHHHHHHhcccc-cC----------CcEEEEE-----Ee
Confidence 65311 14578999999999996 1 1366666654321 10 1122222 11
Q ss_pred CccCHHHHHHHHHHHHhhHhh-hhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 158 NSVSMENFLIALEKTVLDLLV-EEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 158 ~~i~~t~~~~~ld~ai~rRf~-~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
+.. .+....+++++.+||. ..+.|++++ .++...|++.-+
T Consensus 171 n~~--d~~~~~L~~~v~SR~~~~~i~F~pYt----------~~el~~Il~~Rl 211 (318)
T 3te6_A 171 GHN--VTIREQINIMPSLKAHFTEIKLNKVD----------KNELQQMIITRL 211 (318)
T ss_dssp CSS--CCCHHHHHTCHHHHTTEEEEECCCCC----------HHHHHHHHHHHH
T ss_pred cCc--ccchhhcchhhhccCCceEEEeCCCC----------HHHHHHHHHHHH
Confidence 111 1112457888999997 689999999 777666665554
No 49
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.51 E-value=3.8e-14 Score=125.41 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=108.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh---------cc----chhHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY---------FS----ESGKLVQKMFNKI 80 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~---------~g----~~~~~~~~~f~~a 80 (256)
..+.+++|+||||||||++++++++.+............+++++|....+.. ++ ..+....+++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 3477899999999999999999999984321100114588999987543221 00 0011123334444
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
...+...+.|.+|+|||+|.+...+ ....++..++..++.... . .++.++. .++..
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~~~~~~~~~-~--------~~~~~I~-----~t~~~ 177 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRITRINQELGD-R--------VWVSLVG-----ITNSL 177 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHHHGGGCC--------------CEEEE-----ECSCS
T ss_pred HHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHhhchhhcCC-C--------ceEEEEE-----EECCC
Confidence 4444335568999999999997542 012355666665543320 0 1111111 11111
Q ss_pred CHHHHHHHHHHHHhhHhhh-hhccCCCCCCCCcchhhhhhhHHHHHHHhcCC--CcccccchhHHHHHHhCC---CCcc
Q psy3997 161 SMENFLIALEKTVLDLLVE-EKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT--SYPLQHSKHFTELVQSHP---GRCK 233 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~-~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~--~~~~~~~~~~~~l~~~t~---g~~~ 233 (256)
++...+++.+.+||.. .+.+++++ .+++..++...+.. ....-.+..++.+++.+. |+.+
T Consensus 178 ---~~~~~l~~~l~~r~~~~~i~l~~l~----------~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 178 ---GFVENLEPRVKSSLGEVELVFPPYT----------APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp ---TTSSSSCHHHHTTTTSEECCBCCCC----------HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred ---chHhhhCHHHHhcCCCeEEeeCCCC----------HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence 1113467788899985 88999999 88888888877642 111224466777777776 8763
No 50
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.50 E-value=2.2e-14 Score=123.89 Aligned_cols=173 Identities=20% Similarity=0.186 Sum_probs=100.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-----ccch----hHHHHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-----FSES----GKLVQKMFNKIKEAVEY 86 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-----~g~~----~~~~~~~f~~a~~~~~~ 86 (256)
...+||+||||||||++|+++|+.+.. ...+++.++|+.+.... +|.. .......+..+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~------~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---- 116 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR---- 116 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS------CGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHH----
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC------CCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHH----
Confidence 347999999999999999999999853 23468999988764321 1110 0000011222211
Q ss_pred cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc------
Q psy3997 87 EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV------ 160 (256)
Q Consensus 87 ~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i------ 160 (256)
...++||||||+|.+.+ .+.+.|++.|+.-...... + ..+.+...++.+++|.-
T Consensus 117 ~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~le~~~~~~~~--~---~~~~~~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 117 RRPYSVILFDAIEKAHP---------------DVFNILLQMLDDGRLTDSH--G---RTVDFRNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp HCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEECTT--S---CEEECTTEEEEEEESTTHHHHHT
T ss_pred hCCCeEEEEeChhhcCH---------------HHHHHHHHHHhcCEEEcCC--C---CEEECCCcEEEEecccCHHHHHh
Confidence 22458999999999843 3778888888754322110 0 11111111122222220
Q ss_pred ---------CHHH-----HHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC---------ccccc
Q psy3997 161 ---------SMEN-----FLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS---------YPLQH 217 (256)
Q Consensus 161 ---------~~t~-----~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~---------~~~~~ 217 (256)
.... ....+++++.+||+..+.+++|+ .+.+..|++.++... ...-.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~----------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 246 (311)
T 4fcw_A 177 GLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT----------KEQIRQIVEIQMSYLRARLAEKRISLELT 246 (311)
T ss_dssp TTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCC----------HHHHHHHHHHHTHHHHHHHHTTTCEEEEC
T ss_pred hhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCC----------HHHHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 1111 14567788899999999999999 677777777666431 11113
Q ss_pred chhHHHHHHhC
Q psy3997 218 SKHFTELVQSH 228 (256)
Q Consensus 218 ~~~~~~l~~~t 228 (256)
+..++.|++..
T Consensus 247 ~~~~~~l~~~~ 257 (311)
T 4fcw_A 247 EAAKDFLAERG 257 (311)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 46677777643
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=8.2e-15 Score=143.36 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhh-hcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRL-QSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~-~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+++++|+||||||||++|+++|+.+.... .....+.++++++++.+. .++.|+.+..++.+|..+.. ...|.
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQ----SQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHT----TCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHh----cCCCe
Confidence 356899999999999999999999983210 000124588999998886 56677788888888887764 34689
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHH----H
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFL----I 167 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~----~ 167 (256)
||||||+|.+.+.+... ......+.+...++.- .+.+++ +++.. .
T Consensus 266 iL~IDEi~~l~~~~~~~-------g~~~~~~~L~~~l~~~-------------~i~~I~-----------at~~~~~~~~ 314 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKAE-------GAVDAGNMLKPALARG-------------ELRLIG-----------ATTLDEYREI 314 (854)
T ss_dssp EEEECCC--------------------------HHHHHTT-------------CCCEEE-----------EECHHHHHHH
T ss_pred EEEEecHHHHhccCCcc-------chHHHHHHHHHHHhCC-------------CeEEEE-----------ecCchHHhhh
Confidence 99999999998664321 0112334444444321 111222 22322 2
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC----cccccchhHHHHHHhCCCCc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS----YPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~----~~~~~~~~~~~l~~~t~g~~ 232 (256)
.+|+++.|||.. +.++.|+ .+.+..+++.++... ...-.+..+..+++++.+++
T Consensus 315 ~~d~aL~rRf~~-i~l~~p~----------~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 315 EKDPALERRFQP-VYVDEPT----------VEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp TTCTTTCSCCCC-EEECCCC----------HHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred ccCHHHHhCCce-EEeCCCC----------HHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 368899999985 8999999 888888887655321 12224577788888776654
No 52
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.49 E-value=6.6e-15 Score=127.90 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=104.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
.+.++||+||||||||++|+++++.++. +++.+++..+.. ...+...|.. ....+.+||
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~---------~~~~~~~~~~~~------~~~l~~~l~~------~~~~~~~l~ 95 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGV---------NLRVTSGPAIEK------PGDLAAILAN------SLEEGDILF 95 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTC---------CEEEECTTTCCS------HHHHHHHHTT------TCCTTCEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCC---------CEEEEeccccCC------hHHHHHHHHH------hccCCCEEE
Confidence 4678999999999999999999999864 678888876532 1122222221 124678999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCch---hh----hcccchhhHhhhhcCccCHHHHHH
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGR---TL----RKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~---~~----~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
|||++.+... ....++..++.....-.+-.+. .. ..+.+.+ ++|...
T Consensus 96 lDEi~~l~~~---------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~-----------~t~~~~ 149 (324)
T 1hqc_A 96 IDEIHRLSRQ---------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG-----------ATTRPG 149 (324)
T ss_dssp ETTTTSCCHH---------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE-----------EESCCS
T ss_pred EECCcccccc---------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE-----------eCCCcc
Confidence 9999998643 3455666666432110000000 00 0111211 223234
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
.+++++.+||...+.+++|+ .+.+.+++..++......-.+..++.|++.++|+.+.
T Consensus 150 ~~~~~l~~R~~~~i~l~~~~----------~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~ 206 (324)
T 1hqc_A 150 LITAPLLSRFGIVEHLEYYT----------PEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRV 206 (324)
T ss_dssp SCSCSTTTTCSCEEECCCCC----------HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHH
T ss_pred cCCHHHHhcccEEEecCCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHH
Confidence 56777889998899999999 7778888887775443333457889999999997643
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=1e-13 Score=121.54 Aligned_cols=161 Identities=14% Similarity=0.168 Sum_probs=101.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHH-----------HH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEA-----------VE 85 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-----------~~ 85 (256)
.++||+||||||||++++++|+.++.+-. ....++++++++... ...+++.+...... ..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDL---MKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENY 129 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHH---HTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcc---cccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccC
Confidence 44999999999999999999999864311 124678888876421 11222222221110 00
Q ss_pred hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHH
Q psy3997 86 YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENF 165 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~ 165 (256)
....+.||+|||+|.+... ..+.|++.|+..... ..+.+ ++|.
T Consensus 130 ~~~~~~vliiDE~~~l~~~---------------~~~~Ll~~le~~~~~---------~~~il-------------~~~~ 172 (353)
T 1sxj_D 130 PCPPYKIIILDEADSMTAD---------------AQSALRRTMETYSGV---------TRFCL-------------ICNY 172 (353)
T ss_dssp CCCSCEEEEETTGGGSCHH---------------HHHHHHHHHHHTTTT---------EEEEE-------------EESC
T ss_pred CCCCceEEEEECCCccCHH---------------HHHHHHHHHHhcCCC---------ceEEE-------------EeCc
Confidence 1235679999999998643 346677777654311 01111 1223
Q ss_pred HHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 166 LIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 166 ~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+..+++++.+|+. .+.+++|+ .++...++...+......-.+..++.|++.+.|+.+.
T Consensus 173 ~~~l~~~l~sR~~-~i~~~~~~----------~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 173 VTRIIDPLASQCS-KFRFKALD----------ASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRR 230 (353)
T ss_dssp GGGSCHHHHHHSE-EEECCCCC----------HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHH
T ss_pred hhhCcchhhccCc-eEEeCCCC----------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHH
Confidence 3457788899987 77888888 6666777776664433322568899999999998754
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.46 E-value=9.5e-14 Score=123.53 Aligned_cols=107 Identities=24% Similarity=0.381 Sum_probs=64.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-hhhccch-hHHHHHHHHHHHHHHHhcCCeE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-SKYFSES-GKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.++.++||+||||||||++|+++|+.++. +|+.+++..+. ..++|.. +..+..++..+...+. ...++
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 139 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDI---------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ-KAQKG 139 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTC---------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHH-HHTTS
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCC---------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhh-hcCCe
Confidence 35678999999999999999999999854 77999998775 3455554 3345555544321111 12568
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~ 131 (256)
||||||+|.+...+.......+ .....+.+.|+..|++.
T Consensus 140 vl~iDEi~~l~~~~~~~~~~~~-~~~~~~~~~Ll~~le~~ 178 (376)
T 1um8_A 140 IVFIDEIDKISRLSENRSITRD-VSGEGVQQALLKIVEGS 178 (376)
T ss_dssp EEEEETGGGC---------------CHHHHHHHHHHHHCC
T ss_pred EEEEcCHHHHhhhcCCCceecc-cchHHHHHHHHHHhhcc
Confidence 9999999999876543211111 11234789999999854
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.44 E-value=9.7e-14 Score=134.15 Aligned_cols=147 Identities=20% Similarity=0.321 Sum_probs=92.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEeCc
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDE 97 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~iDE 97 (256)
++||+||||||||++|+++|+.+.. ...+|+.++|+++...+....+ .++..++ ...++||||||
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~------~~~~~i~i~~s~~~~~~~~~~~----~l~~~~~-----~~~~~vl~lDE 587 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG------DEESMIRIDMSEYMEKHSTSGG----QLTEKVR-----RKPYSVVLLDA 587 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS------CTTCEEEEEGGGGCSSCCCC-------CHHHHH-----HCSSSEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC------CCcceEEEechhcccccccccc----hhhHHHH-----hCCCeEEEEeC
Confidence 6999999999999999999999842 3458999999998877654411 1222222 23568999999
Q ss_pred chhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccC------HHHHHHHHHH
Q psy3997 98 IESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVS------MENFLIALEK 171 (256)
Q Consensus 98 id~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~------~t~~~~~ld~ 171 (256)
||.+.+ .+.+.|++.|+.-.-...+ | +.+.+....+.+++|.-. .......+.+
T Consensus 588 i~~~~~---------------~~~~~Ll~~le~g~~~~~~--g---~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p 647 (758)
T 3pxi_A 588 IEKAHP---------------DVFNILLQVLEDGRLTDSK--G---RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRP 647 (758)
T ss_dssp GGGSCH---------------HHHHHHHHHHHHSBCC----------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCH
T ss_pred ccccCH---------------HHHHHHHHHhccCeEEcCC--C---CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCH
Confidence 998743 4889999999863211110 1 111122222222333111 1122334678
Q ss_pred HHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 172 TVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 172 ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
.+.+||+..+.+++|+ ++.+..|+..++
T Consensus 648 ~l~~Rl~~~i~~~~l~----------~~~~~~i~~~~l 675 (758)
T 3pxi_A 648 EFINRIDEIIVFHSLE----------KKHLTEIVSLMS 675 (758)
T ss_dssp HHHTTSSEEEECC--C----------HHHHHHHHHHHH
T ss_pred HHHhhCCeEEecCCCC----------HHHHHHHHHHHH
Confidence 8899998899999999 666666666555
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.44 E-value=1.6e-13 Score=132.57 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=93.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh------------hccchhHHHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK------------YFSESGKLVQKMFNKIKEAV 84 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~ 84 (256)
.++||+||||||||++|+++|+.++. +++.++++++... |+|..+. ..+...++
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~---------~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~--- 554 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGI---------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVI--- 554 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC---------EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHH---
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcC---------CEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHH---
Confidence 46999999999999999999999854 7899999887653 2332211 11223222
Q ss_pred HhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhc-CCCCCchhhhcccchhhHhhhhcCcc---
Q psy3997 85 EYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK-STGLSGRTLRKIPFLTFVKYISNNSV--- 160 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~-~~g~~g~~~~~~~~~~~~~~~~~~~i--- 160 (256)
...++||||||||.+.+ .+++.|++.||.-.-. ..|. .+.+...++.+++|.-
T Consensus 555 --~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~~~~~~~~g~------~~~~~~~~iI~tsN~~~~~ 611 (758)
T 1r6b_X 555 --KHPHAVLLLDEIEKAHP---------------DVFNILLQVMDNGTLTDNNGR------KADFRNVVLVMTTNAGVRE 611 (758)
T ss_dssp --HCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEETTTE------EEECTTEEEEEEECSSCC-
T ss_pred --hCCCcEEEEeCccccCH---------------HHHHHHHHHhcCcEEEcCCCC------EEecCCeEEEEecCcchhh
Confidence 23578999999998743 3889999999853211 1111 1111111222222211
Q ss_pred ----------------CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcC
Q psy3997 161 ----------------SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCG 210 (256)
Q Consensus 161 ----------------~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~ 210 (256)
........+++++.+||+..+.+++|+ ++.+..|++.++.
T Consensus 612 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~----------~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 612 TERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLS----------TDVIHQVVDKFIV 667 (758)
T ss_dssp ----------------CHHHHHHHSCHHHHTTCSEEEECCCCC----------HHHHHHHHHHHHH
T ss_pred hhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCC----------HHHHHHHHHHHHH
Confidence 112233466788999999889999999 6667777666554
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.42 E-value=3.1e-14 Score=137.55 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=106.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhh-hcccccceEEEEeccccc--hhhccchhHHHHHHHHHHHHHHHhcCCeE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRL-QSKYKITEFIEINSHSLF--SKYFSESGKLVQKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~-~~~~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~~~~p~ 91 (256)
.+.++||+||||||||++|+++|+.+.... .....++.++.++...+. .++.|..+..++.+|+.+.. ..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~-----~~~~ 280 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-----DTNS 280 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS-----SSCE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh-----cCCe
Confidence 467899999999999999999999984310 001124577888877766 45677778888888887763 3689
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHH----
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI---- 167 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~---- 167 (256)
||||||+|.+.+.+.. ........+.+...++. . .+.+++ +++.++
T Consensus 281 iL~IDEi~~l~~~~~~------~~~~~~~~~~L~~~l~~----~---------~~~~I~-----------at~~~~~~~~ 330 (758)
T 1r6b_X 281 ILFIDEIHTIIGAGAA------SGGQVDAANLIKPLLSS----G---------KIRVIG-----------STTYQEFSNI 330 (758)
T ss_dssp EEEETTTTTTTTSCCS------SSCHHHHHHHHSSCSSS----C---------CCEEEE-----------EECHHHHHCC
T ss_pred EEEEechHHHhhcCCC------CcchHHHHHHHHHHHhC----C---------CeEEEE-----------EeCchHHhhh
Confidence 9999999999865432 11122233333222221 0 111111 233322
Q ss_pred -HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC----CcccccchhHHHHHHhCCCC
Q psy3997 168 -ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT----SYPLQHSKHFTELVQSHPGR 231 (256)
Q Consensus 168 -~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~----~~~~~~~~~~~~l~~~t~g~ 231 (256)
.+|+++.+||. .+.++.|+ .++|..+++..+.. ....-.+..++.+++++.++
T Consensus 331 ~~~d~aL~~Rf~-~i~v~~p~----------~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 331 FEKDRALARRFQ-KIDITEPS----------IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp CCCTTSSGGGEE-EEECCCCC----------HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCHHHHhCce-EEEcCCCC----------HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 25788999998 69999999 88888888765532 11111345666677666554
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.42 E-value=1.7e-14 Score=132.20 Aligned_cols=161 Identities=14% Similarity=0.183 Sum_probs=95.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhh-hcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRL-QSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~-~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.+.++||+||||||||++|+++|+.+.... .....+.+++.+++. .++.|..+..++.+|+.+.. ..+.||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~-----~~~~iL 271 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQ-----AGNIIL 271 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHT-----CCCCEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHh-----cCCeEE
Confidence 367899999999999999999999974210 001124578888887 56677777788889988774 378899
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHH
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTV 173 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai 173 (256)
||| . . ....+.|+..|+.- .+.+++ .++...... ...+|+++
T Consensus 272 fiD------~-------~------~~a~~~L~~~L~~g-------------~v~vI~-----at~~~e~~~-~~~~~~al 313 (468)
T 3pxg_A 272 FID------A-------A------IDASNILKPSLARG-------------ELQCIG-----ATTLDEYRK-YIEKDAAL 313 (468)
T ss_dssp EEC------C---------------------CCCTTSS-------------SCEEEE-----ECCTTTTHH-HHTTCSHH
T ss_pred EEe------C-------c------hhHHHHHHHhhcCC-------------CEEEEe-----cCCHHHHHH-HhhcCHHH
Confidence 999 0 0 01334444333310 111222 111111111 12478999
Q ss_pred hhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC----CcccccchhHHHHHHhCCCCc
Q psy3997 174 LDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT----SYPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 174 ~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~----~~~~~~~~~~~~l~~~t~g~~ 232 (256)
.+||.. +.++.|+ .+.+..|++.++.. ....-.+..++.+++++.+++
T Consensus 314 ~~Rf~~-i~v~~p~----------~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 314 ERRFQP-IQVDQPS----------VDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp HHSEEE-EECCCCC----------HHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred HHhCcc-ceeCCCC----------HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 999984 9999999 88999999977754 222224577888888877654
No 59
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=2.5e-13 Score=117.68 Aligned_cols=160 Identities=15% Similarity=0.194 Sum_probs=99.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHH-hcCCeEEEEe
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVE-YEESLVCLLI 95 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~-~~~~p~Ii~i 95 (256)
..+||+||||||||++|+++|+.+..+. ....++++++++... ...++..+........ ....+.+|+|
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vlii 116 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGEN----WRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 116 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGG----HHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCc----ccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEE
Confidence 3599999999999999999999975321 123578888765321 1112222221111000 1146789999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.+... ..+.|+..++..... ..+.. +++.+..+.+++.+
T Consensus 117 De~~~l~~~---------------~~~~L~~~le~~~~~-----------~~~i~-----------~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 117 DEADALTQD---------------AQQALRRTMEMFSSN-----------VRFIL-----------SCNYSSKIIEPIQS 159 (327)
T ss_dssp ETGGGSCHH---------------HHHHHHHHHHHTTTT-----------EEEEE-----------EESCGGGSCHHHHH
T ss_pred eCCCcCCHH---------------HHHHHHHHHHhcCCC-----------CeEEE-----------EeCCccccCHHHHh
Confidence 999998542 456677777653211 11111 12222446778888
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
|+. .+.+++++ .++...++...+......-.+..++.|++.++|+.+.
T Consensus 160 r~~-~~~~~~l~----------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~ 207 (327)
T 1iqp_A 160 RCA-IFRFRPLR----------DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRR 207 (327)
T ss_dssp TEE-EEECCCCC----------HHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHH
T ss_pred hCc-EEEecCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHH
Confidence 887 67888888 6777777776665443332557889999999997754
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.7e-13 Score=121.54 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=99.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhh-cccc-cceEEEEeccccc-hhh------c----c----chhHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ-SKYK-ITEFIEINSHSLF-SKY------F----S----ESGKLVQKMF 77 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~-~~~~-~~~~~~v~~~~l~-~~~------~----g----~~~~~~~~~f 77 (256)
.+++++|+||||||||++++++++++..... .... ...+++++|.... +.. . | ........++
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 3678999999999999999999999843210 0001 4578999986543 110 0 0 0000012233
Q ss_pred HHHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHH-HHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhh
Q psy3997 78 NKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRV-VNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYIS 156 (256)
Q Consensus 78 ~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i-~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~ 156 (256)
..+...+. ...+ ||+|||+|.+...+. ... +..++... .++.++. .
T Consensus 124 ~~l~~~l~-~~~~-vlilDEi~~l~~~~~-----------~~~~l~~l~~~~---------------~~~~iI~-----~ 170 (384)
T 2qby_B 124 DKIKNGTR-NIRA-IIYLDEVDTLVKRRG-----------GDIVLYQLLRSD---------------ANISVIM-----I 170 (384)
T ss_dssp HHHHHHHS-SSCE-EEEEETTHHHHHSTT-----------SHHHHHHHHTSS---------------SCEEEEE-----E
T ss_pred HHHHHHhc-cCCC-EEEEECHHHhccCCC-----------CceeHHHHhcCC---------------cceEEEE-----E
Confidence 33333222 2233 999999999975421 113 44443322 1111111 1
Q ss_pred cCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC--CcccccchhHHHHHHhCC---CC
Q psy3997 157 NNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT--SYPLQHSKHFTELVQSHP---GR 231 (256)
Q Consensus 157 ~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~--~~~~~~~~~~~~l~~~t~---g~ 231 (256)
++.. ++...+++.+.+||...+.+++++ .++..+++...+.. ....-.+..++.+++.+. |+
T Consensus 171 t~~~---~~~~~l~~~l~sr~~~~i~l~~l~----------~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~ 237 (384)
T 2qby_B 171 SNDI---NVRDYMEPRVLSSLGPSVIFKPYD----------AEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGD 237 (384)
T ss_dssp CSST---TTTTTSCHHHHHTCCCEEEECCCC----------HHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCC
T ss_pred ECCC---chHhhhCHHHHhcCCCeEEECCCC----------HHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCC
Confidence 1111 112446788889987799999999 88888888876642 111224567778888776 86
Q ss_pred cc
Q psy3997 232 CK 233 (256)
Q Consensus 232 ~~ 233 (256)
.+
T Consensus 238 ~r 239 (384)
T 2qby_B 238 AR 239 (384)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 61
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.39 E-value=3.6e-13 Score=118.11 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=96.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
++..++|+|||||||||+++++|+.++. ++...++..+.. ...+..++.. ...+.|++
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---------~~~~~sg~~~~~------~~~l~~~~~~-------~~~~~v~~ 107 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQT---------NIHVTSGPVLVK------QGDMAAILTS-------LERGDVLF 107 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTC---------CEEEEETTTCCS------HHHHHHHHHH-------CCTTCEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC---------CEEEEechHhcC------HHHHHHHHHH-------ccCCCEEE
Confidence 3577999999999999999999999864 445555433221 2223333221 23567999
Q ss_pred eCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhc---CCCCCch----hhhcccchhhHhhhhcCccCHHHHHH
Q psy3997 95 IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK---STGLSGR----TLRKIPFLTFVKYISNNSVSMENFLI 167 (256)
Q Consensus 95 iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~---~~g~~g~----~~~~~~~~~~~~~~~~~~i~~t~~~~ 167 (256)
|||++.+.+. +...++..++..... ..+.... .+..+.+. .+++.+.
T Consensus 108 iDE~~~l~~~---------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li-----------~at~~~~ 161 (334)
T 1in4_A 108 IDEIHRLNKA---------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-----------GATTRSG 161 (334)
T ss_dssp EETGGGCCHH---------------HHHHHHHHHHTSCCCC---------------CCCEEE-----------EEESCGG
T ss_pred EcchhhcCHH---------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEE-----------EecCCcc
Confidence 9999998642 223333344322100 0000000 00111111 1233345
Q ss_pred HHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcc
Q psy3997 168 ALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCK 233 (256)
Q Consensus 168 ~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~ 233 (256)
.|+..+++||.....+++|+ .+++.++++.........-.+..++.|++.+.|+.+
T Consensus 162 ~Ls~~l~sR~~l~~~Ld~~~----------~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R 217 (334)
T 1in4_A 162 LLSSPLRSRFGIILELDFYT----------VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPR 217 (334)
T ss_dssp GSCHHHHTTCSEEEECCCCC----------HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHH
T ss_pred cCCHHHHHhcCceeeCCCCC----------HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChH
Confidence 68889999998888999999 888888887766433222244778899999888764
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.38 E-value=2.1e-14 Score=125.52 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=86.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc--cchhhccchhHHHHHHHHHHHHHHHhcCC---e
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS--LFSKYFSESGKLVQKMFNKIKEAVEYEES---L 90 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~--l~~~~~g~~~~~~~~~f~~a~~~~~~~~~---p 90 (256)
+.++||+||||||||++|+++|+.++. +++.+++.. ......|... +............ .
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~---------~~~~i~~~~~~~~~~l~g~~~------~~~~~~~~~~~~g~l~~ 110 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDL---------DFHRIQFTPDLLPSDLIGTMI------YNQHKGNFEVKKGPVFS 110 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTC---------CEEEEECCTTCCHHHHHEEEE------EETTTTEEEEEECTTCS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC---------CeEEEecCCCCChhhcCCcee------ecCCCCceEeccCcccc
Confidence 578999999999999999999999864 567777631 1111222110 0000000000111 2
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHH
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALE 170 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld 170 (256)
+|+||||+|.+.+ ...+.|+..|+.......|........+.+.+ ++|...... ...++
T Consensus 111 ~vl~iDEi~~~~~---------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via-----t~np~~~~~-~~~l~ 169 (331)
T 2r44_A 111 NFILADEVNRSPA---------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLA-----TQNPVEQEG-TYPLP 169 (331)
T ss_dssp SEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEE-----EECTTCCSC-CCCCC
T ss_pred cEEEEEccccCCH---------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEE-----ecCCCcccC-cccCC
Confidence 6999999999743 35677777777532211111100111111211 222211000 01278
Q ss_pred HHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCC
Q psy3997 171 KTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGT 211 (256)
Q Consensus 171 ~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~ 211 (256)
+++.+||...+.++.|+ .+.|.++++..+..
T Consensus 170 ~~l~~Rf~~~i~i~~p~----------~~~~~~il~~~~~~ 200 (331)
T 2r44_A 170 EAQVDRFMMKIHLTYLD----------KESELEVMRRVSNM 200 (331)
T ss_dssp HHHHTTSSEEEECCCCC----------HHHHHHHHHHHHCT
T ss_pred HHHHhheeEEEEcCCCC----------HHHHHHHHHhcccc
Confidence 89999998889999999 88899998887754
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=1.7e-12 Score=115.11 Aligned_cols=166 Identities=14% Similarity=0.169 Sum_probs=102.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh--h-------cc----chhHHHHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK--Y-------FS----ESGKLVQKMFNKIKEAV 84 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~--~-------~g----~~~~~~~~~f~~a~~~~ 84 (256)
.++++||||||||++++++++.+... ....+++++|....+. . +| ........+++.+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK-----TTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL 120 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS-----CCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh-----cCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999998431 0347889997654321 0 01 01112233444444444
Q ss_pred HhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHH
Q psy3997 85 EYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMEN 164 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~ 164 (256)
.....|.||+|||++.+. ...+..|+..++....... .++.++. .++. .+
T Consensus 121 ~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~~~~~~~~~~-------~~~~iI~-----~~~~---~~ 170 (389)
T 1fnn_A 121 RERDLYMFLVLDDAFNLA---------------PDILSTFIRLGQEADKLGA-------FRIALVI-----VGHN---DA 170 (389)
T ss_dssp HHTTCCEEEEEETGGGSC---------------HHHHHHHHHHTTCHHHHSS-------CCEEEEE-----EESS---TH
T ss_pred hhcCCeEEEEEECccccc---------------hHHHHHHHHHHHhCCCCCc-------CCEEEEE-----EECC---ch
Confidence 445678999999999981 2366777777765542100 0111111 1111 12
Q ss_pred HHHHHHHHHhhHhhh-hhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC--cccccchhHHHHHHhC
Q psy3997 165 FLIALEKTVLDLLVE-EKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS--YPLQHSKHFTELVQSH 228 (256)
Q Consensus 165 ~~~~ld~ai~rRf~~-~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~--~~~~~~~~~~~l~~~t 228 (256)
+...+++.+.+||.. .+.+++++ .++...++...+... ...-.+..++.+++.+
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYT----------KDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCB----------HHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCC----------HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 345567778889886 78888888 777777776665421 1122457888899998
No 64
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.38 E-value=1.2e-13 Score=119.24 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=99.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHh-cCCeEEEEeC
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEY-EESLVCLLID 96 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~-~~~p~Ii~iD 96 (256)
.+||+||||||||++|+++|+.+..+. ....++++++++.... ..++..+......... ...+.||+||
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiD 109 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGEN----WRDNFIEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLD 109 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTC----HHHHCEEEETTSTTCT------TTSSHHHHHHHHSCCSSSCCCEEEEEE
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCc----ccCCeEEEeCccccCh------HHHHHHHHHHHhcCCCCCCCceEEEEe
Confidence 499999999999999999999973210 1236788888764221 1122222222111011 2457899999
Q ss_pred cchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhH
Q psy3997 97 EIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDL 176 (256)
Q Consensus 97 Eid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rR 176 (256)
|+|.+... ..+.|+..++.... ...+.. ++|.+..+.+++.+|
T Consensus 110 e~~~l~~~---------------~~~~L~~~le~~~~-----------~~~~i~-----------~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 110 EADALTAD---------------AQAALRRTMEMYSK-----------SCRFIL-----------SCNYVSRIIEPIQSR 152 (319)
T ss_dssp TGGGSCHH---------------HHHTTGGGTSSSSS-----------SEEEEE-----------EESCGGGSCHHHHTT
T ss_pred CCCcCCHH---------------HHHHHHHHHHhcCC-----------CCeEEE-----------EeCChhhcchHHHhh
Confidence 99998542 33445555543211 111111 122234567888899
Q ss_pred hhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 177 LVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 177 f~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+. .+.+++|+ .+++..++...+......-.+..++.|++.++|+.+.
T Consensus 153 ~~-~i~~~~~~----------~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 153 CA-VFRFKPVP----------KEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRK 199 (319)
T ss_dssp CE-EEECCCCC----------HHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHH
T ss_pred Ce-EEEecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 86 78888888 7777788777775444333557889999999998754
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.37 E-value=5.3e-14 Score=135.96 Aligned_cols=161 Identities=14% Similarity=0.190 Sum_probs=94.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhh-hhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~-~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
.+.++||+||||||||++|+++|+.+... ......++.++.+++ ..++.|+.+..++.+|+.+.. ..++||
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~-----~~~~iL 271 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQ-----AGNIIL 271 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHT-----CCCCEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHh-----cCCEEE
Confidence 46789999999999999999999997320 000112457787777 456678888889999998874 478999
Q ss_pred EeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHH
Q psy3997 94 LIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTV 173 (256)
Q Consensus 94 ~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai 173 (256)
||| . . ....+.|+..|+.- .+.+++ .++...... ...+|+++
T Consensus 272 fiD-----~--------~------~~~~~~L~~~l~~~-------------~v~~I~-----at~~~~~~~-~~~~d~al 313 (758)
T 3pxi_A 272 FID-----A--------A------IDASNILKPSLARG-------------ELQCIG-----ATTLDEYRK-YIEKDAAL 313 (758)
T ss_dssp EEC-----C----------------------CCCTTSS-------------SCEEEE-----ECCTTTTHH-HHTTCSHH
T ss_pred EEc-----C--------c------hhHHHHHHHHHhcC-------------CEEEEe-----CCChHHHHH-HhhccHHH
Confidence 999 0 0 01334444443310 111222 111111111 12578999
Q ss_pred hhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC----cccccchhHHHHHHhCCCCc
Q psy3997 174 LDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS----YPLQHSKHFTELVQSHPGRC 232 (256)
Q Consensus 174 ~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~----~~~~~~~~~~~l~~~t~g~~ 232 (256)
.||| ..+.++.|+ .+++..|++.++... ...-.+..++.+++++.+++
T Consensus 314 ~rRf-~~i~v~~p~----------~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 314 ERRF-QPIQVDQPS----------VDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp HHSE-EEEECCCCC----------HHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred HhhC-cEEEeCCCC----------HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 9999 459999999 999999999776542 11123466777777766543
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=4.9e-13 Score=115.59 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=99.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHH-Hh-cCCeEEEEe
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAV-EY-EESLVCLLI 95 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~-~~~p~Ii~i 95 (256)
.++|+||||||||++|+++|+.+..+. ....++++++++... ...++++++...... .. ...+.||+|
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viii 113 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRS----YADGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVIL 113 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGG----HHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCc----ccCCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEE
Confidence 399999999999999999999974321 123678888765321 223444444332100 00 224789999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.+... ..+.|+..++..... ..+.. +++.+..+.+.+.+
T Consensus 114 De~~~l~~~---------------~~~~L~~~le~~~~~-----------~~~il-----------~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 114 DEADSMTAG---------------AQQALRRTMELYSNS-----------TRFAF-----------ACNQSNKIIEPLQS 156 (323)
T ss_dssp ESGGGSCHH---------------HHHTTHHHHHHTTTT-----------EEEEE-----------EESCGGGSCHHHHT
T ss_pred ECcccCCHH---------------HHHHHHHHHhccCCC-----------ceEEE-----------EeCChhhchhHHHh
Confidence 999998542 345566666643210 11111 11222456678888
Q ss_pred HhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 176 LLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 176 Rf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
|+. .+.+++|+ .++..+++...+......-.+..++.+++.++|+...
T Consensus 157 r~~-~i~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 157 QCA-ILRYSKLS----------DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp TSE-EEECCCCC----------HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHH
T ss_pred hce-EEeecCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 876 78888888 7777777776664332222457788999999997743
No 67
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.34 E-value=7.8e-13 Score=108.76 Aligned_cols=164 Identities=20% Similarity=0.258 Sum_probs=95.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc---------------cccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK---------------YKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~---------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..++++||||||||++++++++.++...... .....++.++... ......++++++.+
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 118 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNV 118 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHh
Confidence 45799999999999999999999986421000 0001223333221 01122334444332
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... .....+.+|+|||+|.+.. ...+.++..++.... ...+..
T Consensus 119 ~~~-~~~~~~~vlviDe~~~l~~---------------~~~~~l~~~l~~~~~-----------~~~~i~---------- 161 (250)
T 1njg_A 119 QYA-PARGRFKVYLIDEVHMLSR---------------HSFNALLKTLEEPPE-----------HVKFLL---------- 161 (250)
T ss_dssp CCS-CSSSSSEEEEEETGGGSCH---------------HHHHHHHHHHHSCCT-----------TEEEEE----------
T ss_pred hhc-hhcCCceEEEEECcccccH---------------HHHHHHHHHHhcCCC-----------ceEEEE----------
Confidence 110 0123578999999999743 245667777764311 111111
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
+++....+++++.+|+ ..+.+++++ .++..+++..++......-.++.++.+++.++|+...
T Consensus 162 -~t~~~~~~~~~l~~r~-~~i~l~~l~----------~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~ 223 (250)
T 1njg_A 162 -ATTDPQKLPVTILSRC-LQFHLKALD----------VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRD 223 (250)
T ss_dssp -EESCGGGSCHHHHTTS-EEEECCCCC----------HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHH
T ss_pred -EeCChHhCCHHHHHHh-hhccCCCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHH
Confidence 1111234566777775 577888888 7777888877775433332457788999999997643
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.8e-12 Score=114.43 Aligned_cols=176 Identities=20% Similarity=0.263 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccc-cceEEEEeccccchh------h---cc----chhHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYK-ITEFIEINSHSLFSK------Y---FS----ESGKLVQKMFNKI 80 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~-~~~~~~v~~~~l~~~------~---~g----~~~~~~~~~f~~a 80 (256)
.+..++++||||||||++++++++.+.... . ...+++++|...... . +| .......++++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 119 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKF----LGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRL 119 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHT----CSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 367899999999999999999999885321 1 347888887643211 0 00 0111123344444
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
...+.....|.||+|||++.+..... ..++..++..++.... .++.++. .++..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~~~~~~~~~----------~~~~~I~-----~~~~~ 173 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLSRINSEVNK----------SKISFIG-----ITNDV 173 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHHHHHHSCCC------------EEEEE-----EESCG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHhhchhhcCC----------CeEEEEE-----EECCC
Confidence 44444345689999999999975421 1266777777765411 1111111 11111
Q ss_pred CHHHHHHHHHHHHhhHhhh-hhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC--cccccchhHHHHHHhCC---CCcc
Q psy3997 161 SMENFLIALEKTVLDLLVE-EKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS--YPLQHSKHFTELVQSHP---GRCK 233 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~-~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~--~~~~~~~~~~~l~~~t~---g~~~ 233 (256)
++...+++.+.+||.. .+.+++++ .++..+++...+... ...-.+..++.+++.+. |+..
T Consensus 174 ---~~~~~~~~~~~~r~~~~~i~l~~l~----------~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 239 (386)
T 2qby_A 174 ---KFVDLLDPRVKSSLSEEEIIFPPYN----------AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDAR 239 (386)
T ss_dssp ---GGGGGCTTHHHHTTTTEEEEECCCC----------HHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHH
T ss_pred ---ChHhhhCHHHhccCCCeeEEeCCCC----------HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHH
Confidence 1123456677788864 88899998 777788877655321 11123466777777776 7654
No 69
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=7.6e-12 Score=109.72 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=95.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHH-HhcCCeEEEEeCc
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAV-EYEESLVCLLIDE 97 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~~~~p~Ii~iDE 97 (256)
++|+||||||||++++++|+.+..+. ....+.++++++.. | ...+++......... .....+.|++|||
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~----~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe 118 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN----YSNMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDE 118 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS----HHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC----ccceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeC
Confidence 99999999999999999999975321 12357778776531 1 122333332222100 0113478999999
Q ss_pred chhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhhHh
Q psy3997 98 IESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLL 177 (256)
Q Consensus 98 id~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~rRf 177 (256)
+|.+... ..+.|+..++.....+ .+.+ ++|.+..+.+++.+|+
T Consensus 119 ~~~l~~~---------------~~~~L~~~le~~~~~~---------~~il-------------~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 119 ADAMTNA---------------AQNALRRVIERYTKNT---------RFCV-------------LANYAHKLTPALLSQC 161 (340)
T ss_dssp GGGSCHH---------------HHHHHHHHHHHTTTTE---------EEEE-------------EESCGGGSCHHHHTTS
T ss_pred CCCCCHH---------------HHHHHHHHHhcCCCCe---------EEEE-------------EecCccccchhHHhhc
Confidence 9998542 3466777777543211 1111 1233355778889998
Q ss_pred hhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccc
Q psy3997 178 VEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKV 234 (256)
Q Consensus 178 ~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~ 234 (256)
. .+.++.++ .++..+.+...+......-.+...+.+++++.|+.+.
T Consensus 162 ~-~~~~~~l~----------~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 162 T-RFRFQPLP----------QEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp E-EEECCCCC----------HHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHH
T ss_pred e-eEeccCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 6 55666666 5555555555553322222457788899999997754
No 70
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.26 E-value=1.2e-12 Score=114.57 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.++||+||||||||++|+++|+.++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 45699999999999999999999885
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.26 E-value=5.3e-12 Score=123.49 Aligned_cols=87 Identities=26% Similarity=0.362 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-----c-------cchhHHHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-----F-------SESGKLVQKMFNKIKEAV 84 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-----~-------g~~~~~~~~~f~~a~~~~ 84 (256)
..+||+||||||||++|+++|+.+.. ...+|+.++|+++.... + |... ...+...++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~------~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~--- 657 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVR--- 657 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS------SGGGEEEECTTTCCSSGGGGGC----------------CHHHHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC------CCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHH---
Confidence 47999999999999999999999843 23578999998775432 1 2211 112222222
Q ss_pred HhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch
Q psy3997 85 EYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~ 131 (256)
...++||||||+|.+.+ .+.+.|++.|+.-
T Consensus 658 --~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~l~~~ 687 (854)
T 1qvr_A 658 --RRPYSVILFDEIEKAHP---------------DVFNILLQILDDG 687 (854)
T ss_dssp --HCSSEEEEESSGGGSCH---------------HHHHHHHHHHTTT
T ss_pred --hCCCeEEEEecccccCH---------------HHHHHHHHHhccC
Confidence 23568999999998743 4889999999853
No 72
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.25 E-value=1.2e-11 Score=108.27 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc---------------cccceEEEEeccccchhhccchhHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK---------------YKITEFIEINSHSLFSKYFSESGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~---------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 79 (256)
.+.++||+||||||||++|+++|+.+..+.... .....++.+++.+- ++ ..+...++++.+.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHH
Confidence 467899999999999999999999986421000 00123555554310 00 1122345565554
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+... .....+.|++|||+|.+... ..+.|++.|++-... ..+..
T Consensus 100 ~~~~-~~~~~~kvviIdead~l~~~---------------a~naLLk~lEep~~~-----------~~~Il--------- 143 (334)
T 1a5t_A 100 LNEH-ARLGGAKVVWVTDAALLTDA---------------AANALLKTLEEPPAE-----------TWFFL--------- 143 (334)
T ss_dssp TTSC-CTTSSCEEEEESCGGGBCHH---------------HHHHHHHHHTSCCTT-----------EEEEE---------
T ss_pred Hhhc-cccCCcEEEEECchhhcCHH---------------HHHHHHHHhcCCCCC-----------eEEEE---------
Confidence 4321 01235789999999998532 457888888753211 11111
Q ss_pred cCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 160 VSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 160 i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+++.++.+.+.+++|+. .+.+++|+ +++..+++...+ .. .+..++.+++.+.|+...+
T Consensus 144 --~t~~~~~l~~ti~SRc~-~~~~~~~~----------~~~~~~~L~~~~----~~-~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 144 --ATREPERLLATLRSRCR-LHYLAPPP----------EQYAVTWLSREV----TM-SQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp --EESCGGGSCHHHHTTSE-EEECCCCC----------HHHHHHHHHHHC----CC-CHHHHHHHHHHTTTCHHHH
T ss_pred --EeCChHhCcHHHhhcce-eeeCCCCC----------HHHHHHHHHHhc----CC-CHHHHHHHHHHcCCCHHHH
Confidence 12223567788999986 68888888 766666666554 11 3467788999998876433
No 73
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.24 E-value=2.6e-11 Score=124.14 Aligned_cols=112 Identities=14% Similarity=0.190 Sum_probs=85.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc------------hhhccc----hhHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF------------SKYFSE----SGKLVQ 74 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~------------~~~~g~----~~~~~~ 74 (256)
+++|..+.+|+|||||||||++|+++|.+.+. ++.+.++++..... ++|+++ +++.++
T Consensus 1077 GG~p~g~~~l~~G~~g~GKT~la~~~~~~~~~------~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~ 1150 (1706)
T 3cmw_A 1077 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 1150 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCChHHHHHHHHHHhhh------cCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHH
Confidence 45566666999999999999999999998865 23455666666544 666777 889999
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhccc--CCCCCCcHHHHHHHHHHHHHchhh
Q psy3997 75 KMFNKIKEAVEYEESLVCLLIDEIESLTRARESVM--SGTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 75 ~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~--~~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
.+|..|+.. .|++|++||+|.|++.+.... ...+.....|+++++|+.|+++..
T Consensus 1151 ~~~~~ar~~-----~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~ 1206 (1706)
T 3cmw_A 1151 ICDALARSG-----AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1206 (1706)
T ss_dssp HHHHHHHHT-----CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhc
Confidence 999888854 899999999999999865321 122235567899999999998554
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.24 E-value=8.7e-12 Score=107.96 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=59.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-----ccchhH-------HHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-----FSESGK-------LVQKMFNKIK 81 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-----~g~~~~-------~~~~~f~~a~ 81 (256)
..+.++||+||||||||++|+++++.... ...+|+.++|+.+.... +|.... .....|..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~------~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a- 95 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSAR------SDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA- 95 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSC------SSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHH-
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcc------cCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhc-
Confidence 34678999999999999999999997642 24578999998765422 221100 011123222
Q ss_pred HHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHch
Q psy3997 82 EAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQL 131 (256)
Q Consensus 82 ~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~ 131 (256)
.+++||||||+.+... +...|+..|+..
T Consensus 96 -------~~g~L~LDEi~~l~~~---------------~q~~Ll~~l~~~ 123 (304)
T 1ojl_A 96 -------DGGTLFLDEIGDISPL---------------MQVRLLRAIQER 123 (304)
T ss_dssp -------TTSEEEEESCTTCCHH---------------HHHHHHHHHHSS
T ss_pred -------CCCEEEEeccccCCHH---------------HHHHHHHHHhcC
Confidence 2468999999998543 556777777754
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=5e-12 Score=111.03 Aligned_cols=164 Identities=16% Similarity=0.232 Sum_probs=93.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcc--------------------cccceEEEEeccccchhhccchhHHHHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSK--------------------YKITEFIEINSHSLFSKYFSESGKLVQKMFN 78 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~--------------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~ 78 (256)
++|+||||||||++++++|+++..+-... .....++++++++.. ......+++.++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~ 114 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLK 114 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHH
Confidence 99999999999999999999763211000 000123334332210 001112444443
Q ss_pred HHHHHHHh---------cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccch
Q psy3997 79 KIKEAVEY---------EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFL 149 (256)
Q Consensus 79 ~a~~~~~~---------~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~ 149 (256)
.+...... ...|.|++|||++.+.. ...+.+++.|+..... ..+.+
T Consensus 115 ~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---------------~~~~~L~~~le~~~~~---------~~~Il- 169 (354)
T 1sxj_E 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---------------DAQAALRRTMEKYSKN---------IRLIM- 169 (354)
T ss_dssp HHTTTTC------------CCEEEEEECTTSSCH---------------HHHHHHHHHHHHSTTT---------EEEEE-
T ss_pred HHHHhccccccccccccCCCCeEEEEeCccccCH---------------HHHHHHHHHHHhhcCC---------CEEEE-
Confidence 33211000 22677999999998632 2456777777654311 01111
Q ss_pred hhHhhhhcCccCHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCccccc-chhHHHHHHhC
Q psy3997 150 TFVKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQH-SKHFTELVQSH 228 (256)
Q Consensus 150 ~~~~~~~~~~i~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~-~~~~~~l~~~t 228 (256)
.+ +.+..+.+.+.+|+ ..+.+++|+ .++..++++..+......-. +..++.+++.+
T Consensus 170 ------~t------~~~~~l~~~l~sR~-~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~ 226 (354)
T 1sxj_E 170 ------VC------DSMSPIIAPIKSQC-LLIRCPAPS----------DSEISTILSDVVTNERIQLETKDILKRIAQAS 226 (354)
T ss_dssp ------EE------SCSCSSCHHHHTTS-EEEECCCCC----------HHHHHHHHHHHHHHHTCEECCSHHHHHHHHHH
T ss_pred ------Ee------CCHHHHHHHHHhhc-eEEecCCcC----------HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHc
Confidence 11 11233566788898 778899999 77777887777644332224 67789999999
Q ss_pred CCCccc
Q psy3997 229 PGRCKV 234 (256)
Q Consensus 229 ~g~~~~ 234 (256)
+|+.+.
T Consensus 227 ~G~~r~ 232 (354)
T 1sxj_E 227 NGNLRV 232 (354)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 998753
No 76
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.22 E-value=5.9e-12 Score=111.10 Aligned_cols=165 Identities=20% Similarity=0.259 Sum_probs=97.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcc---------------cccceEEEEeccccchhhccchhHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK---------------YKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~---------------~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 80 (256)
+..+||+||||||||++++++|+.++...... .....++.+++... .....++++++.+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~ 111 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNV 111 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHH
Confidence 56799999999999999999999986421000 00012344443321 1112345555543
Q ss_pred HHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCcc
Q psy3997 81 KEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSV 160 (256)
Q Consensus 81 ~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i 160 (256)
... .....+.||+|||+|.+.. ...+.|+..++.... ...+.. .+
T Consensus 112 ~~~-~~~~~~~vliiDe~~~l~~---------------~~~~~Ll~~le~~~~-----------~~~~Il-----~~--- 156 (373)
T 1jr3_A 112 QYA-PARGRFKVYLIDEVHMLSR---------------HSFNALLKTLEEPPE-----------HVKFLL-----AT--- 156 (373)
T ss_dssp TSC-CSSSSSEEEEEECGGGSCH---------------HHHHHHHHHHHSCCS-----------SEEEEE-----EE---
T ss_pred hhc-cccCCeEEEEEECcchhcH---------------HHHHHHHHHHhcCCC-----------ceEEEE-----Ee---
Confidence 311 0123578999999999843 245777777765321 111111 11
Q ss_pred CHHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccc
Q psy3997 161 SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVT 235 (256)
Q Consensus 161 ~~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~ 235 (256)
+....+.+.+.+|+ ..+.+++|+ .++...++...+......-.+..++.+++.++|+....
T Consensus 157 ---~~~~~l~~~l~sr~-~~i~~~~l~----------~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~ 217 (373)
T 1jr3_A 157 ---TDPQKLPVTILSRC-LQFHLKALD----------VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA 217 (373)
T ss_dssp ---SCGGGSCHHHHTTS-EEEECCCCC----------HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHH
T ss_pred ---CChHhCcHHHHhhe-eEeeCCCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHH
Confidence 11134556777787 577888888 77777777766644332224467888999999976543
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.21 E-value=1.1e-12 Score=120.58 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=81.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc-cchhhccc-hhHHH--HHHHHHHHHHHHhcCCeE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS-LFSKYFSE-SGKLV--QKMFNKIKEAVEYEESLV 91 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~-l~~~~~g~-~~~~~--~~~f~~a~~~~~~~~~p~ 91 (256)
..++||+||||||||++|+++|+.++. ...|..+++.- .....+|. ..... ...|..+... ....++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~-------~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g--~l~~~~ 111 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQN-------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSG--YLPEAE 111 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSS-------CCEEEEECCTTCCHHHHHCCBC----------CBCCTT--SGGGCS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhh-------hhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhcc--CCCcce
Confidence 578999999999999999999998742 22455555532 12223331 11110 1111111100 000356
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHH
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEK 171 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ 171 (256)
|+|||||+.+.+ .+.+.|+..|+.-.-...|.......++. .+.+|..... ....+
T Consensus 112 IL~IDEI~r~~~---------------~~q~~LL~~lee~~v~i~G~~~~~~~~~i------I~ATN~lpe~---~~~~~ 167 (500)
T 3nbx_X 112 IVFLDEIWKAGP---------------AILNTLLTAINERQFRNGAHVEKIPMRLL------VAASNELPEA---DSSLE 167 (500)
T ss_dssp EEEEESGGGCCH---------------HHHHHHHHHHHSSEEECSSSEEECCCCEE------EEEESSCCCT---TCTTH
T ss_pred eeeHHhHhhhcH---------------HHHHHHHHHHHHHhccCCCCcCCcchhhh------hhccccCCCc---cccHH
Confidence 999999987643 47788999987543322222111111111 1122221100 11235
Q ss_pred HHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhc
Q psy3997 172 TVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFC 209 (256)
Q Consensus 172 ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~ 209 (256)
++.+||...+.+++|+. ++.+..|+....
T Consensus 168 aLldRF~~~i~v~~p~~---------~ee~~~IL~~~~ 196 (500)
T 3nbx_X 168 ALYDRMLIRLWLDKVQD---------KANFRSMLTSQQ 196 (500)
T ss_dssp HHHTTCCEEEECCSCCC---------HHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhh---------hhhHHHHHhccc
Confidence 88999999999999992 255666665443
No 78
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.19 E-value=1.9e-11 Score=94.25 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=50.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
.+..+||+||||||||++|+++++.... ...+|+ ++|..+... ......|..+ ..++||
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~------~~~~~v-~~~~~~~~~------~~~~~~~~~a--------~~g~l~ 81 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN------AQGEFV-YRELTPDNA------PQLNDFIALA--------QGGTLV 81 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT------TTSCCE-EEECCTTTS------SCHHHHHHHH--------TTSCEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc------cCCCEE-EECCCCCcc------hhhhcHHHHc--------CCcEEE
Confidence 4678999999999999999999998643 245778 999876543 1233344433 346899
Q ss_pred eCcchhhhhh
Q psy3997 95 IDEIESLTRA 104 (256)
Q Consensus 95 iDEid~l~~~ 104 (256)
|||+|.+...
T Consensus 82 ldei~~l~~~ 91 (145)
T 3n70_A 82 LSHPEHLTRE 91 (145)
T ss_dssp EECGGGSCHH
T ss_pred EcChHHCCHH
Confidence 9999998653
No 79
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.18 E-value=2.5e-11 Score=102.53 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=57.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-----ccchhHHHHHHHHHHH----HHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-----FSESGKLVQKMFNKIK----EAVE 85 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~f~~a~----~~~~ 85 (256)
.+.++||+||||||||++|+++++.+.. ...+|++++|+.+.... +|.... .|..+. ..+.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~------~~~~~~~v~~~~~~~~~~~~~l~g~~~~----~~~g~~~~~~~~l~ 97 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR------WQGPFISLNCAALNENLLDSELFGHEAG----AFTGAQKRHPGRFE 97 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT------TTSCEEEEEGGGSCHHHHHHHHHCCC-------------CCCCHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc------cCCCeEEEecCCCChhHHHHHhcCCccc----ccccccccccchhh
Confidence 4678999999999999999999998753 24579999998764321 111100 011000 0011
Q ss_pred hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 86 YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
...+.+|||||++.+... +...|+..|+.
T Consensus 98 -~a~~~~l~lDEi~~l~~~---------------~q~~Ll~~l~~ 126 (265)
T 2bjv_A 98 -RADGGTLFLDELATAPMM---------------VQEKLLRVIEY 126 (265)
T ss_dssp -HTTTSEEEEESGGGSCHH---------------HHHHHHHHHHH
T ss_pred -hcCCcEEEEechHhcCHH---------------HHHHHHHHHHh
Confidence 113569999999998543 45667777764
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.13 E-value=1.1e-11 Score=95.40 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=49.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
.+.++||+||||||||++|+++++..+ +|++++|.++...+ ...+|..+ .+.+||
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~----------~~~~~~~~~~~~~~-------~~~~~~~a--------~~~~l~ 80 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT----------PWVSPARVEYLIDM-------PMELLQKA--------EGGVLY 80 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS----------CEECCSSTTHHHHC-------HHHHHHHT--------TTSEEE
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC----------CeEEechhhCChHh-------hhhHHHhC--------CCCeEE
Confidence 467899999999999999999999762 67899998765433 23344332 346899
Q ss_pred eCcchhhhhh
Q psy3997 95 IDEIESLTRA 104 (256)
Q Consensus 95 iDEid~l~~~ 104 (256)
|||+|.+...
T Consensus 81 lDei~~l~~~ 90 (143)
T 3co5_A 81 VGDIAQYSRN 90 (143)
T ss_dssp EEECTTCCHH
T ss_pred EeChHHCCHH
Confidence 9999998653
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.07 E-value=7.4e-10 Score=98.75 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=99.0
Q ss_pred CCceEEE--EcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch------hh---ccc----hhHHHHHHHHH
Q psy3997 15 WNRVVLL--HGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS------KY---FSE----SGKLVQKMFNK 79 (256)
Q Consensus 15 ~~~~iLL--~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~------~~---~g~----~~~~~~~~f~~ 79 (256)
.+..+++ +||||+|||++++++++.+............+++++|....+ .. +|. .......++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 128 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 3678999 999999999999999998754210001134678888743211 10 010 01112233444
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCc
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNS 159 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 159 (256)
+...+.....|.||+|||++.+...+. .....+..++..++..... +. ..++.++. .++
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~~~~~---------~~~~~l~~l~~~~~~~~~~--~~----~~~v~lI~-----~~~- 187 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSMLSSPR---------IAAEDLYTLLRVHEEIPSR--DG----VNRIGFLL-----VAS- 187 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHHSCTT---------SCHHHHHHHHTHHHHSCCT--TS----CCBEEEEE-----EEE-
T ss_pred HHHHHHhcCCeEEEEEeCHHHHhhccC---------cchHHHHHHHHHHHhcccC--CC----CceEEEEE-----Eec-
Confidence 443333345789999999999864210 0123555666665543200 00 00111111 111
Q ss_pred cCHHHHHHHHH---HHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCC--cccccchhHHHHHHhCC
Q psy3997 160 VSMENFLIALE---KTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTS--YPLQHSKHFTELVQSHP 229 (256)
Q Consensus 160 i~~t~~~~~ld---~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~--~~~~~~~~~~~l~~~t~ 229 (256)
..++...++ +.+.+++...+.+++++ .++..+++...+... .....+..++.+++.+.
T Consensus 188 --~~~~~~~l~~~~~~~~~~~~~~i~l~~l~----------~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 188 --DVRALSYMREKIPQVESQIGFKLHLPAYK----------SRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp --ETHHHHHHHHHCHHHHTTCSEEEECCCCC----------HHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred --cccHHHHHhhhcchhhhhcCCeeeeCCCC----------HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 123445566 66777777667888888 666666665443211 01123467788888888
No 82
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=2.1e-10 Score=99.34 Aligned_cols=123 Identities=10% Similarity=0.067 Sum_probs=78.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
+..+|||||||||||++|+++|+.++. +......+++++++.- ..+...++++.+.+... .......|++|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~---~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~-p~~~~~kvviI 88 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEK---FPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYS-PELYTRKYVIV 88 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHT---SCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSC-CSSSSSEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCch---hhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhc-cccCCceEEEe
Confidence 458999999999999999999997541 1111336777776521 11233467777666421 11224579999
Q ss_pred CcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHHHhh
Q psy3997 96 DEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLD 175 (256)
Q Consensus 96 DEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~ai~r 175 (256)
||+|.|... -.|.|++.|++....+ .+.- +++.+..+-+++++
T Consensus 89 dead~lt~~---------------a~naLLk~LEep~~~t-----------~fIl-----------~t~~~~kl~~tI~S 131 (305)
T 2gno_A 89 HDCERMTQQ---------------AANAFLKALEEPPEYA-----------VIVL-----------NTRRWHYLLPTIKS 131 (305)
T ss_dssp TTGGGBCHH---------------HHHHTHHHHHSCCTTE-----------EEEE-----------EESCGGGSCHHHHT
T ss_pred ccHHHhCHH---------------HHHHHHHHHhCCCCCe-----------EEEE-----------EECChHhChHHHHc
Confidence 999998542 4688999998653211 1111 12223456678898
Q ss_pred HhhhhhccCCCC
Q psy3997 176 LLVEEKSLPLKR 187 (256)
Q Consensus 176 Rf~~~i~~~~p~ 187 (256)
| .+.+++|+
T Consensus 132 R---~~~f~~l~ 140 (305)
T 2gno_A 132 R---VFRVVVNV 140 (305)
T ss_dssp T---SEEEECCC
T ss_pred e---eEeCCCCC
Confidence 8 88888888
No 83
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.00 E-value=1.8e-10 Score=93.23 Aligned_cols=74 Identities=23% Similarity=0.351 Sum_probs=48.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccch-hHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSES-GKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~-~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
+++++|+||||||||++++++++.+.. ....++++++.++...+.... ...+..+++... .+.+|+
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~li 120 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAK------RNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK-------KVPVLM 120 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHT------TTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH-------HSSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc-------CCCEEE
Confidence 389999999999999999999999854 234678888876654332110 001222333322 345999
Q ss_pred eCcchhhh
Q psy3997 95 IDEIESLT 102 (256)
Q Consensus 95 iDEid~l~ 102 (256)
|||++...
T Consensus 121 lDei~~~~ 128 (202)
T 2w58_A 121 LDDLGAEA 128 (202)
T ss_dssp EEEECCC-
T ss_pred EcCCCCCc
Confidence 99997653
No 84
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.95 E-value=5.5e-12 Score=118.63 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..++||+||||||||++|+++|+.++.
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCC
Confidence 347999999999999999999998853
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.90 E-value=1.1e-09 Score=87.03 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=47.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhH-HHHHHHHHHHHHHHhcCCeEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGK-LVQKMFNKIKEAVEYEESLVC 92 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~~~~p~I 92 (256)
+.+.+++|+||||||||++++++++.+... .+..+++++..++...+...... ....+.+. ...|.+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l 103 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEK-----KGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT-------VLNSPV 103 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHH-----SCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH-------HHTCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH-------hcCCCE
Confidence 347889999999999999999999998421 12345666666554432211000 00011111 126789
Q ss_pred EEeCcchhh
Q psy3997 93 LLIDEIESL 101 (256)
Q Consensus 93 i~iDEid~l 101 (256)
|+|||++..
T Consensus 104 lilDE~~~~ 112 (180)
T 3ec2_A 104 LVLDDLGSE 112 (180)
T ss_dssp EEEETCSSS
T ss_pred EEEeCCCCC
Confidence 999999854
No 86
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.89 E-value=5.1e-09 Score=90.63 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=59.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCe
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL 90 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p 90 (256)
+++++.+.++++||||||||++|.++|...|. .+.|+.+...+.++.+....+..++.+++.+.+ .+
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~-------~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~------~~ 184 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGG-------KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ------HR 184 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHT-------TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH------CS
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCC-------CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh------CC
Confidence 55666777899999999999999999988432 234555522333332222333334444444432 23
Q ss_pred EEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhh
Q psy3997 91 VCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 91 ~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~ 133 (256)
+|+||+++.+......... .....+.+.+++..|.++..
T Consensus 185 -LLVIDsI~aL~~~~~~~s~---~G~v~~~lrqlL~~L~~~~k 223 (331)
T 2vhj_A 185 -VIVIDSLKNVIGAAGGNTT---SGGISRGAFDLLSDIGAMAA 223 (331)
T ss_dssp -EEEEECCTTTC--------------CCHHHHHHHHHHHHHHH
T ss_pred -EEEEecccccccccccccc---cchHHHHHHHHHHHHHHHHh
Confidence 9999999998654332100 01112455666666665543
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.88 E-value=6.3e-10 Score=118.40 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHH---------
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVE--------- 85 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~--------- 85 (256)
..+++||+||||||||++|+.+.... ....++.++++...+ ...+++.+........
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~--------~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P 1331 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS--------SLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLP 1331 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC--------SSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC--------CCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccC
Confidence 46899999999999999996655543 234677788765432 2234444432211000
Q ss_pred -hcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHH
Q psy3997 86 -YEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMEN 164 (256)
Q Consensus 86 -~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~ 164 (256)
..+.+.|+||||+|.-...+- + ......++.+++. ..++.....+ .-..+.++.+.+++ |..+. .
T Consensus 1332 ~~~gk~~VlFiDEinmp~~d~y----g--~q~~lelLRq~le-~gg~yd~~~~-~~~~~~~i~lIaA~-----Npp~~-g 1397 (2695)
T 4akg_A 1332 KSDIKNLVLFCDEINLPKLDKY----G--SQNVVLFLRQLME-KQGFWKTPEN-KWVTIERIHIVGAC-----NPPTD-P 1397 (2695)
T ss_dssp BSSSSCEEEEEETTTCSCCCSS----S--CCHHHHHHHHHHH-TSSEECTTTC-CEEEEESEEEEEEE-----CCTTS-T
T ss_pred CCCCceEEEEeccccccccccc----C--chhHHHHHHHHHh-cCCEEEcCCC-cEEEecCEEEEEec-----CCCcc-C
Confidence 012357999999996322211 1 1111223333321 1122111111 11112333344422 21100 0
Q ss_pred HHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcC
Q psy3997 165 FLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCG 210 (256)
Q Consensus 165 ~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~ 210 (256)
--..|++++.||| ..+.++.|+ ++.+.+|+..++.
T Consensus 1398 GR~~l~~rllRrf-~vi~i~~P~----------~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1398 GRIPMSERFTRHA-AILYLGYPS----------GKSLSQIYEIYYK 1432 (2695)
T ss_dssp TCCCCCHHHHTTE-EEEECCCCT----------TTHHHHHHHHHHH
T ss_pred CCccCChhhhhee-eEEEeCCCC----------HHHHHHHHHHHHH
Confidence 0025789999999 779999999 8888888876663
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.88 E-value=9.1e-10 Score=95.39 Aligned_cols=74 Identities=24% Similarity=0.272 Sum_probs=48.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh-hhhhcccccceEEEEeccccchhhccc-hhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS-IRLQSKYKITEFIEINSHSLFSKYFSE-SGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~-~~~~~~~~~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
+.+++|+||||||||++|+++|+++. . .+.+++++++.++...+... ....+.+.+.... .+.+|
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~------~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-------~~~lL 218 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEK------KGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK-------NVPVL 218 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHH------SCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH-------TSSEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh------cCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc-------CCCEE
Confidence 68999999999999999999999986 4 24577788877665543221 1111222222222 45699
Q ss_pred EeCcchhhh
Q psy3997 94 LIDEIESLT 102 (256)
Q Consensus 94 ~iDEid~l~ 102 (256)
+|||++...
T Consensus 219 iiDdig~~~ 227 (308)
T 2qgz_A 219 ILDDIGAEQ 227 (308)
T ss_dssp EEETCCC--
T ss_pred EEcCCCCCC
Confidence 999997643
No 89
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.83 E-value=1.2e-08 Score=105.98 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=73.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----cc------------chhHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FS------------ESGKLVQ 74 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g------------~~~~~~~ 74 (256)
++++++++++++||||||||++|.++|.+... .+....+++........ .| ..+..++
T Consensus 1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~------~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A 1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 1495 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHH
Confidence 36778999999999999999999999998754 23355666665432111 12 2334455
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCcchhhhhhhhccc-CCC-CCCcHHHHHHHHHHHHHchhh
Q psy3997 75 KMFNKIKEAVEYEESLVCLLIDEIESLTRARESVM-SGT-EPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 75 ~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~-~~~-~~~~~~~i~~~ll~~ld~~~~ 133 (256)
.++..++. ..|++|+|||++.+.+.+.... .+. ......++++++|..|.+...
T Consensus 1496 ~~~~lvr~-----~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~ 1551 (2050)
T 3cmu_A 1496 ICDALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1551 (2050)
T ss_dssp HHHHHHHH-----TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 55555543 4899999999998887543211 111 111146788888898887765
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.73 E-value=1.7e-09 Score=101.90 Aligned_cols=26 Identities=54% Similarity=0.760 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...++|+||||||||++|+++|+.+.
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 56899999999999999999999875
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.69 E-value=1.5e-08 Score=78.46 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
....++|+||+|+|||++++++++.+.. .+...++++..++... .. ...|.+++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~------~g~~~~~~~~~~~~~~-----------------~~---~~~~~lLi 88 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE------AGKNAAYIDAASMPLT-----------------DA---AFEAEYLA 88 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT------TTCCEEEEETTTSCCC-----------------GG---GGGCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh------cCCcEEEEcHHHhhHH-----------------HH---HhCCCEEE
Confidence 4678999999999999999999998842 1235678887766443 00 12678999
Q ss_pred eCcchhhh
Q psy3997 95 IDEIESLT 102 (256)
Q Consensus 95 iDEid~l~ 102 (256)
|||++.+.
T Consensus 89 lDE~~~~~ 96 (149)
T 2kjq_A 89 VDQVEKLG 96 (149)
T ss_dssp EESTTCCC
T ss_pred EeCccccC
Confidence 99998864
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.61 E-value=5.6e-08 Score=103.73 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=54.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEE
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL 94 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~ 94 (256)
...+.+++||||||||++++++|+.+|. +++.++|++-+. ...+..+|..+.. .++.++
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~---------~~v~~nc~e~ld------~~~lg~~~~g~~~------~Gaw~~ 702 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGR---------VVVVFNCDDSFD------YQVLSRLLVGITQ------IGAWGC 702 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTC---------CCEEEETTSSCC------HHHHHHHHHHHHH------HTCEEE
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCC---------cEEEEECCCCCC------hhHhhHHHHHHHh------cCCEee
Confidence 3578899999999999999999999987 668899986544 3445677776664 458999
Q ss_pred eCcchhhhh
Q psy3997 95 IDEIESLTR 103 (256)
Q Consensus 95 iDEid~l~~ 103 (256)
+||++++..
T Consensus 703 ~DE~nr~~~ 711 (2695)
T 4akg_A 703 FDEFNRLDE 711 (2695)
T ss_dssp EETTTSSCH
T ss_pred ehhhhhcCh
Confidence 999999744
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.52 E-value=3.8e-07 Score=79.06 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+.++++||+|+|||++++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 689999999999999999999885
No 94
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.40 E-value=1.5e-06 Score=76.39 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=69.2
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----cc--------chhHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FS--------ESGKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g--------~~~~~~~~~f~ 78 (256)
+++++...++++||||+|||+++..+|..+.. ....+++++........ +| .....+.++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~------~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~ 129 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK------MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALE 129 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHH
Confidence 57777888999999999999999999998753 23356777765432211 01 01112334444
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhhhhhcccCCCC--CCcHHHHHHHHHHHHHchhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTE--PSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~--~~~~~~i~~~ll~~ld~~~~ 133 (256)
.+...+. ...+.+++||.+..+.+...-.....+ .....+.+++++..|..+..
T Consensus 130 ~~~~l~~-~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak 185 (356)
T 3hr8_A 130 IVDELVR-SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185 (356)
T ss_dssp HHHHHHH-TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh-hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444332 346889999999988752221111111 11224566777776666543
No 95
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.34 E-value=2.4e-06 Score=75.03 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=55.9
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccch--------hHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSES--------GKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~~--------~~~~~~~f~ 78 (256)
+++++...++++||||+|||+++..+|..+.. .....++++........ .|.. .....+++.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~------~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~ 129 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQA------AGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALE 129 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHH
Confidence 46777888999999999999999999987753 23356666655432211 1110 012334444
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
.+...+. ...|.+|+||++..+.+
T Consensus 130 ~~~~l~~-~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 130 IADMLVR-SGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHHHT-TTCCSEEEEECGGGCCC
T ss_pred HHHHHHh-cCCCCEEEEcChHhhcc
Confidence 4443332 34689999999999974
No 96
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.29 E-value=4.5e-06 Score=67.61 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=51.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc--cchhh------ccc--------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS--LFSKY------FSE-------------- 68 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~--l~~~~------~g~-------------- 68 (256)
+++++...++++||||+|||++++.+|..- ....++++... ....+ .+.
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~---------~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLS---------GKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTP 85 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHHHH---------CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECC
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHc---------CCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEec
Confidence 467778889999999999999999999821 23566666543 11000 000
Q ss_pred -hhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 69 -SGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 69 -~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
.....+.....++..... .|.+|+|||+..+...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~--~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 86 SDFKEQRRVIGSLKKTVDS--NFALVVVDSITAHYRA 120 (220)
T ss_dssp TTTSHHHHHHHHHHHHCCT--TEEEEEEECCCCCTTG
T ss_pred CCHHHHHHHHHHHHHHhhc--CCCEEEEcCcHHHhhh
Confidence 011122344444444321 5999999999988643
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.26 E-value=4.4e-07 Score=73.53 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=25.6
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+|..+++|+|||||||||++|.++|+.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44457899999999999999999999985
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.25 E-value=2.6e-06 Score=73.85 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
+.++++||+|+|||++++.+++.++. .++++++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~---------~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL---------PYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC---------CEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC---------CEEEEEchh
Confidence 58999999999999999999998743 356666543
No 99
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.25 E-value=3.5e-06 Score=87.83 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=78.2
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----cc--------chhHHHHHHHHH
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FS--------ESGKLVQKMFNK 79 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g--------~~~~~~~~~f~~ 79 (256)
++++...++++|+||+|||+++..+|..+.. ...++++++..+..... +| ..+.++.+++..
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~------~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~ 801 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEI 801 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHH
Confidence 6788999999999999999999999998864 23468888887665543 22 223446777777
Q ss_pred HHHHHHhcCCeEEEEeCcchhhhh-hhhcccCCC-CCCcHHHHHHHHHHHHHchhh
Q psy3997 80 IKEAVEYEESLVCLLIDEIESLTR-ARESVMSGT-EPSDGVRVVNAVLTQIDQLKK 133 (256)
Q Consensus 80 a~~~~~~~~~p~Ii~iDEid~l~~-~r~~~~~~~-~~~~~~~i~~~ll~~ld~~~~ 133 (256)
++.+.. ...|.+|+||.+..+.+ .......+. ......|.++.++..|..+..
T Consensus 802 ~r~l~~-~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAk 856 (2050)
T 3cmu_A 802 CDALAR-SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 856 (2050)
T ss_dssp HHHHHH-HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh-ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 766443 34789999999999986 331111111 112234567777777776544
No 100
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.25 E-value=9e-06 Score=70.55 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=58.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc--h------hhccc--------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF--S------KYFSE-------------- 68 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~--~------~~~g~-------------- 68 (256)
+++++...++++||||+|||+++..+|.....+..........++++..... . .-+|.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 5677788899999999999999999998763321000013366777765531 0 00111
Q ss_pred -hhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 69 -SGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 69 -~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+.....+++..+...+.+...+.+|+||.+..+...
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 111222345555555544357999999999999754
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.24 E-value=8.7e-07 Score=95.52 Aligned_cols=66 Identities=23% Similarity=0.230 Sum_probs=51.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEEEe
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLI 95 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii~i 95 (256)
..|..+.||+|||||++++.+|+.+|. .++.++|++-+. ...+.++|.-+.. ..+..++
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr---------~~~vfnC~~~~d------~~~~g~i~~G~~~------~GaW~cf 662 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGR---------FVLVFCCDEGFD------LQAMSRIFVGLCQ------CGAWGCF 662 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTC---------CEEEEECSSCCC------HHHHHHHHHHHHH------HTCEEEE
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCC---------eEEEEeCCCCCC------HHHHHHHHhhHhh------cCcEEEe
Confidence 467789999999999999999999986 568889987544 2345667766554 4567899
Q ss_pred Ccchhhh
Q psy3997 96 DEIESLT 102 (256)
Q Consensus 96 DEid~l~ 102 (256)
||++++-
T Consensus 663 DEfNrl~ 669 (3245)
T 3vkg_A 663 DEFNRLE 669 (3245)
T ss_dssp ETTTSSC
T ss_pred hhhhcCC
Confidence 9999974
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.22 E-value=4.7e-07 Score=73.34 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=71.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhccccc-ceEEEEeccccchhhc----------cchhH--HHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKI-TEFIEINSHSLFSKYF----------SESGK--LVQKMFNKIKE 82 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~-~~~~~v~~~~l~~~~~----------g~~~~--~~~~~f~~a~~ 82 (256)
+.-.|++|+||||||++|.+++...-. +.....+ .+++..++.++..... ..... ..+..++.+.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~-~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~- 82 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEM-FKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK- 82 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGG-GSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHh-hcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-
Confidence 456899999999999999887655310 0000012 3445566554432221 11000 1122222210
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCH
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSM 162 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~ 162 (256)
.. ...++||+|||++.+.+.+... .+ ..+ ++..++.-. ..++ .+.. +
T Consensus 83 -~~-~~~~~vliIDEAq~l~~~~~~~---~e---~~r----ll~~l~~~r--~~~~------~iil-------------~ 129 (199)
T 2r2a_A 83 -KP-ENIGSIVIVDEAQDVWPARSAG---SK---IPE----NVQWLNTHR--HQGI------DIFV-------------L 129 (199)
T ss_dssp -SG-GGTTCEEEETTGGGTSBCCCTT---CC---CCH----HHHGGGGTT--TTTC------EEEE-------------E
T ss_pred -cc-ccCceEEEEEChhhhccCcccc---ch---hHH----HHHHHHhcC--cCCe------EEEE-------------E
Confidence 01 1247899999999997654321 11 112 334443221 1111 1111 1
Q ss_pred HHHHHHHHHHHhhHhhhhhccCCCCCC
Q psy3997 163 ENFLIALEKTVLDLLVEEKSLPLKRNT 189 (256)
Q Consensus 163 t~~~~~ld~ai~rRf~~~i~~~~p~~~ 189 (256)
++.+..|+.++++|+...+.++.|...
T Consensus 130 tq~~~~l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 130 TQGPKLLDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp ESCGGGBCHHHHTTEEEEEEEEECSSC
T ss_pred CCCHHHHhHHHHHHhheEEEEcCcccC
Confidence 111366888899999999988887633
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=9.3e-06 Score=64.40 Aligned_cols=26 Identities=38% Similarity=0.797 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
.+.|.||+|+||||+++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999998743
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.20 E-value=3.1e-06 Score=66.43 Aligned_cols=27 Identities=22% Similarity=0.541 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|++.|+||+||||+++.+|+.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 567999999999999999999999864
No 105
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.16 E-value=1.1e-05 Score=71.08 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=54.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccch--------hHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSES--------GKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~~--------~~~~~~~f~ 78 (256)
+++++...++++||||+|||++|..+|..+.. ....+++++........ .|.. .....++..
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~------~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~ 131 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 131 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHH
Confidence 46778888999999999999999999988753 23356777764332211 1110 001223333
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
.+..+.. ...+.+|+||.+..+..
T Consensus 132 ~~~~l~~-~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 132 ICDALAR-SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHH-HTCCSEEEEECGGGCCC
T ss_pred HHHHHHh-ccCCCEEEEcCHHHhcc
Confidence 3332222 34688999999999875
No 106
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.16 E-value=9.1e-06 Score=71.16 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=57.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh--------hccc--------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK--------YFSE-------------- 68 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~--------~~g~-------------- 68 (256)
+++++...++++||||+|||+++..+|.....+..........++++....... .+|.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 467777889999999999999999999875331100001335677776553110 0111
Q ss_pred -hhHHHHHHHHHHHHHHHhc-CCeEEEEeCcchhhhhh
Q psy3997 69 -SGKLVQKMFNKIKEAVEYE-ESLVCLLIDEIESLTRA 104 (256)
Q Consensus 69 -~~~~~~~~f~~a~~~~~~~-~~p~Ii~iDEid~l~~~ 104 (256)
+...+.++...+...+.+. ..+.+|+||.+..+...
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 1112223444444544432 57899999999999854
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.16 E-value=1.1e-05 Score=71.28 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=56.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-----ccchhHH-------HHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-----FSESGKL-------VQKMFNKIKE 82 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-----~g~~~~~-------~~~~f~~a~~ 82 (256)
....++++|++||||+++|+++....+. ...|+.++|..+.... +|..... -.-.|..|
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r-------~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a-- 221 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGR-------KGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA-- 221 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCC-------CSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT--
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccc-------cCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc--
Confidence 3566999999999999999999988753 2249999998764332 2211000 00122222
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
....||||||+.+... +...|+..|+.
T Consensus 222 ------~~gtlfldei~~l~~~---------------~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 222 ------DQGTLFLDEVGELDQR---------------VQAKLLRVLET 248 (368)
T ss_dssp ------TTSEEEEETGGGSCHH---------------HHHHHHHHHHH
T ss_pred ------CCCeEEecChhhCCHH---------------HHHHHHHHHHh
Confidence 2357999999999654 66777777764
No 108
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.15 E-value=1.2e-05 Score=66.14 Aligned_cols=92 Identities=16% Similarity=0.251 Sum_probs=53.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch--------hhccc--------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS--------KYFSE-------------- 68 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~--------~~~g~-------------- 68 (256)
+++++...++|+||||+|||++++.+|...-.+..........++++..+... ..+|.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 46677888999999999999999999986322100000123566766654210 00111
Q ss_pred -hhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 69 -SGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 69 -~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
+......++..+.+.+. ...|.+|+|||+..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~-~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMV-ESRYALLIVDSATALYR 133 (243)
T ss_dssp CSHHHHHHHHHHHHHHHH-HSCEEEEEEETSSGGGC
T ss_pred CCHHHHHHHHHHHHHHHh-cCCceEEEEeCchHHHH
Confidence 11122223333333332 34789999999998864
No 109
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.14 E-value=7e-06 Score=72.51 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=56.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccch--------hHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSES--------GKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~~--------~~~~~~~f~ 78 (256)
+++++...++++||||+|||+++..+|..+.. ....+++++........ .|.. .....+++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~------~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~ 142 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQK------AGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALE 142 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHH------CCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHH
Confidence 46777888999999999999999999988753 13356777765433221 1110 012334444
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
.+..+.. ...+.+|+||.+..+.+
T Consensus 143 ~l~~l~~-~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 143 IMELLVR-SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHHHT-TTCCSEEEEECTTTCCC
T ss_pred HHHHHHh-cCCCCEEEEeChHHhcc
Confidence 4444332 34688999999999974
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.14 E-value=7.6e-06 Score=66.62 Aligned_cols=31 Identities=32% Similarity=0.311 Sum_probs=26.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+++++...++++||||+|||++++.+|..+.
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3566677899999999999999999997653
No 111
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.13 E-value=1.7e-06 Score=77.06 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh-----ccchhH-------HHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY-----FSESGK-------LVQKMFNKIKE 82 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~-----~g~~~~-------~~~~~f~~a~~ 82 (256)
....++++|++|||||++|+++...... ...+|+.++|..+.... +|.... ...-.|..|
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r------~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a-- 230 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDR------SKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA-- 230 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTT------TTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT--
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCC------CCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeC--
Confidence 4567899999999999999999988653 34689999998764432 221100 001122222
Q ss_pred HHHhcCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc
Q psy3997 83 AVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ 130 (256)
Q Consensus 83 ~~~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~ 130 (256)
...+||||||+.+... +...|++.|+.
T Consensus 231 ------~~gtlfldei~~l~~~---------------~q~~Ll~~l~~ 257 (387)
T 1ny5_A 231 ------DGGTLFLDEIGELSLE---------------AQAKLLRVIES 257 (387)
T ss_dssp ------TTSEEEEESGGGCCHH---------------HHHHHHHHHHH
T ss_pred ------CCcEEEEcChhhCCHH---------------HHHHHHHHHhc
Confidence 2368999999999653 66777777764
No 112
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.09 E-value=1.1e-05 Score=83.26 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=61.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----cc--------chhHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FS--------ESGKLVQKMFN 78 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g--------~~~~~~~~~f~ 78 (256)
+++++...++++||||+|||+++..+|..+.. ...++.+++..+..... .| ..+..+.+++.
T Consensus 727 GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~------~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~ 800 (1706)
T 3cmw_A 727 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 800 (1706)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCcCCCceEEEECCCCCCcHHHHHHHHHHHHH------cCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHH
Confidence 46888999999999999999999999998764 23367777765544221 22 11224556666
Q ss_pred HHHHHHHhcCCeEEEEeCcchhhhh
Q psy3997 79 KIKEAVEYEESLVCLLIDEIESLTR 103 (256)
Q Consensus 79 ~a~~~~~~~~~p~Ii~iDEid~l~~ 103 (256)
.++.+.. ...|.+|+||.+..+.+
T Consensus 801 ~l~~lv~-~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 801 ICDALAR-SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHHHHHH-HTCCSEEEESCSTTCCC
T ss_pred HHHHHHH-ccCCCEEEEechhhhcc
Confidence 6665443 34789999999999974
No 113
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.06 E-value=1.3e-05 Score=69.10 Aligned_cols=117 Identities=11% Similarity=0.146 Sum_probs=64.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhh----ccc--------hhHHHHHH-H
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY----FSE--------SGKLVQKM-F 77 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~----~g~--------~~~~~~~~-f 77 (256)
+++++. .++++||||+|||+++..++...... +....++++++..-.... +|- .+....++ +
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l 98 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRI 98 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHH
Confidence 566666 68999999999999999888876531 013467788875533211 111 11123333 3
Q ss_pred HHHHHHH-HhcCCeEEEEeCcchhhhhhhhcccCCCCC--C--cHHHHHHHHHHHHHchh
Q psy3997 78 NKIKEAV-EYEESLVCLLIDEIESLTRARESVMSGTEP--S--DGVRVVNAVLTQIDQLK 132 (256)
Q Consensus 78 ~~a~~~~-~~~~~p~Ii~iDEid~l~~~r~~~~~~~~~--~--~~~~i~~~ll~~ld~~~ 132 (256)
..+..+. .+...|.+|+||-|..+.+...-.....+. . ...|.+++.|..|..+.
T Consensus 99 ~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~a 158 (333)
T 3io5_A 99 DMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYF 158 (333)
T ss_dssp HHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3332220 124579999999999997532211100000 1 23456667666655443
No 114
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.06 E-value=2.5e-06 Score=71.98 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=24.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++.++++||||||||||++++++|+.++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3356899999999999999999999864
No 115
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.03 E-value=4.4e-06 Score=66.00 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|+|.||||+||||+++.+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999999965
No 116
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=4.4e-06 Score=67.14 Aligned_cols=28 Identities=43% Similarity=0.523 Sum_probs=25.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.+.|+|.||||+||||+++.+|+.++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999999965
No 117
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.98 E-value=2.7e-05 Score=63.30 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=26.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+++++..-+.|.||+|+||||+++.++..+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4666778899999999999999999998653
No 118
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.98 E-value=6.5e-05 Score=61.80 Aligned_cols=29 Identities=34% Similarity=0.404 Sum_probs=25.2
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+++++...+.|.||+|+||||+++.++..
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35677888999999999999999999953
No 119
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.96 E-value=2.5e-05 Score=67.54 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=57.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhh---------hcccc-cceEEEEeccccc--hh---h---ccc----
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL---------QSKYK-ITEFIEINSHSLF--SK---Y---FSE---- 68 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~---------~~~~~-~~~~~~v~~~~l~--~~---~---~g~---- 68 (256)
+++++...++++||||+|||+++..+|.....+. ..... ...+++++..... .. + +|.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~ 172 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQT 172 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHH
Confidence 5677788899999999999999999998743210 00000 1467777766531 10 0 111
Q ss_pred -----------hhHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 69 -----------SGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 69 -----------~~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
+.....+++..+...+.+...+.+|+||.+..+...
T Consensus 173 ~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 173 VLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 111122344445555443357899999999999753
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.96 E-value=1.5e-05 Score=62.34 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~ 38 (256)
|+.|++.|+||+||||+++.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 56799999999999999999998
No 121
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.94 E-value=1.1e-05 Score=66.21 Aligned_cols=41 Identities=27% Similarity=0.581 Sum_probs=33.7
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
++.++.|+|.||||+||+|.|+.+|+.+|. ..++..+++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~-----------~hIstGdllR~ 66 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHF-----------NHLSSGDLLRA 66 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCC-----------EEECHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCC-----------ceEcHHHHHHH
Confidence 344788999999999999999999999854 67777776654
No 122
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.94 E-value=9.7e-05 Score=60.61 Aligned_cols=31 Identities=39% Similarity=0.402 Sum_probs=26.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+++++...++++||||+|||+++..+|...-
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4677788899999999999999998887653
No 123
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.92 E-value=4.9e-05 Score=66.67 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=57.1
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-hh----h----------------ccc-
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-SK----Y----------------FSE- 68 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-~~----~----------------~g~- 68 (256)
+++++...+.++||||+|||++++.+|.....+..........++++..+.. .. . +..
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 4567778899999999999999999999873221000001245666654421 00 0 010
Q ss_pred -hhHHHHHHHHHHHHHHHhc----CCeEEEEeCcchhhhhh
Q psy3997 69 -SGKLVQKMFNKIKEAVEYE----ESLVCLLIDEIESLTRA 104 (256)
Q Consensus 69 -~~~~~~~~f~~a~~~~~~~----~~p~Ii~iDEid~l~~~ 104 (256)
......+++..+...+... ..|.+|+|||+-.+...
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 0112334555555555432 57999999999988754
No 124
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.90 E-value=7.9e-05 Score=66.54 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=54.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh--------hccch-------------
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK--------YFSES------------- 69 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~--------~~g~~------------- 69 (256)
+++++...+.++||||+|||+|++.+|-....+..........++++..+.... .+|-.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 567778889999999999999999887554332111111235677776542111 01110
Q ss_pred --hHHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 70 --GKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 70 --~~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
..........+...+. ...|.+|+||++-.+...
T Consensus 253 ~~~~~~~~~l~~~~~~l~-~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMS-ESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp CSHHHHHHHHHHHHHHHH-HSCEEEEEEETGGGGCC-
T ss_pred CChHHHHHHHHHHHHHHH-hcCCceEEecchhhhCch
Confidence 1112233334444333 247999999999888653
No 125
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.88 E-value=2.8e-05 Score=61.53 Aligned_cols=27 Identities=33% Similarity=0.646 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|..|+|.|+||+||||+++.+++.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567999999999999999999999864
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.86 E-value=1.7e-05 Score=61.81 Aligned_cols=27 Identities=37% Similarity=0.757 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..+.|.||||+||||+++.+|..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999863
No 127
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.86 E-value=4.7e-06 Score=89.98 Aligned_cols=153 Identities=21% Similarity=0.248 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHh--------
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEY-------- 86 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~-------- 86 (256)
..+.+||+||||||||+++......+ ....++.++++.-.+ ...+...+..-.+....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l--------~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~ 1368 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF--------PDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLR 1368 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC--------TTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC--------CCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccC
Confidence 35789999999999998876554433 233567788765432 23344444321000000
Q ss_pred ---cCCeEEEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHc--hhhcCCCCCchhhhcccchhhHhhhhcCccC
Q psy3997 87 ---EESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQ--LKKKSTGLSGRTLRKIPFLTFVKYISNNSVS 161 (256)
Q Consensus 87 ---~~~p~Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~--~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~ 161 (256)
.++..|+||||++.-....- + ....+..|.+.||. +-... ...-..+..+.+.+++.-...
T Consensus 1369 p~~~Gk~~VlFiDDiNmp~~D~y----G-----tQ~~ielLrqlld~~g~yd~~-~~~~~~i~d~~~vaamnPp~~---- 1434 (3245)
T 3vkg_A 1369 PTQLGKWLVVFCDEINLPSTDKY----G-----TQRVITFIRQMVEKGGFWRTS-DHTWIKLDKIQFVGACNPPTD---- 1434 (3245)
T ss_dssp ESSTTCEEEEEETTTTCCCCCTT----S-----CCHHHHHHHHHHHHSEEEETT-TTEEEEESSEEEEEEECCTTS----
T ss_pred CCcCCceEEEEecccCCCCcccc----c-----cccHHHHHHHHHHcCCeEECC-CCeEEEecCeEEEEEcCCCCC----
Confidence 12346999999996322110 1 11233333344442 11111 111112223333332221110
Q ss_pred HHHHHHHHHHHHhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHh
Q psy3997 162 MENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMF 208 (256)
Q Consensus 162 ~t~~~~~ld~ai~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~ 208 (256)
.-...+++.+.|||.. +.++.|+ ++....|+..+
T Consensus 1435 --gGr~~l~~Rf~r~F~v-i~i~~ps----------~esL~~If~ti 1468 (3245)
T 3vkg_A 1435 --AGRVQLTHRFLRHAPI-LLVDFPS----------TSSLTQIYGTF 1468 (3245)
T ss_dssp --TTCCCCCHHHHTTCCE-EECCCCC----------HHHHHHHHHHH
T ss_pred --CCCccCCHHHHhhceE-EEeCCCC----------HHHHHHHHHHH
Confidence 0002367788899887 7899999 77777776544
No 128
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.85 E-value=1.1e-05 Score=63.97 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=25.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.+..|++.|+||+||||+++.+++.++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34778999999999999999999999864
No 129
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.85 E-value=3e-05 Score=65.05 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
+..|++.|+||+||||+++.+++.+.. .+..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~------~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK------NNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh------CCCEEEEECchHH
Confidence 567999999999999999999998542 1234554555444
No 130
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.84 E-value=1.3e-05 Score=65.90 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=45.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc---c---chhhccch-----hHHHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS---L---FSKYFSES-----GKLVQKMFNKIKEAV 84 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~---l---~~~~~g~~-----~~~~~~~f~~a~~~~ 84 (256)
..-++++||||+||||++..++..+.. .+..++.+++.. . +.+..|-. .....+++..+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~------~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY------ADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 345777899999999999999888753 122344443221 1 11111211 011234555554321
Q ss_pred HhcCCeEEEEeCcchhh
Q psy3997 85 EYEESLVCLLIDEIESL 101 (256)
Q Consensus 85 ~~~~~p~Ii~iDEid~l 101 (256)
. ...+.+|+|||+..+
T Consensus 86 ~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 86 F-NDETKVIGIDEVQFF 101 (223)
T ss_dssp S-CTTCCEEEECSGGGS
T ss_pred h-CCCCCEEEEecCccC
Confidence 1 235789999999875
No 131
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.84 E-value=3.9e-05 Score=60.53 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.|++.|+||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999986
No 132
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.84 E-value=4.9e-05 Score=66.13 Aligned_cols=166 Identities=13% Similarity=-0.016 Sum_probs=92.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchhhccchhHHHHHHHHHHHHHHHhcCCeEEE
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL 93 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~~~~p~Ii 93 (256)
..+..+|||||+|+||++.++.+++.+..+- ......+.++. +..++++.+.+... ..-...-||
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----------~~~~~~l~~~~~~~-plf~~~kvv 80 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQG---FEEHHTFSIDP-----------NTDWNAIFSLCQAM-SLFASRQTL 80 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHT---CCEEEEEECCT-----------TCCHHHHHHHHHHH-HHCCSCEEE
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCC---CCeeEEEEecC-----------CCCHHHHHHHhcCc-CCccCCeEE
Confidence 3467899999999999999999999875320 00111222221 13356666665532 223456799
Q ss_pred EeCcchh-hhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHHHHHHHHH
Q psy3997 94 LIDEIES-LTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKT 172 (256)
Q Consensus 94 ~iDEid~-l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~~~~ld~a 172 (256)
+|||++. +.. ...+.|+..+++....+ .+++ .++.+.-.+....+-++
T Consensus 81 ii~~~~~kl~~---------------~~~~aLl~~le~p~~~~---------~~il-------~~~~~~~~~~~~k~~~~ 129 (343)
T 1jr3_D 81 LLLLPENGPNA---------------AINEQLLTLTGLLHDDL---------LLIV-------RGNKLSKAQENAAWFTA 129 (343)
T ss_dssp EEECCSSCCCT---------------THHHHHHHHHTTCBTTE---------EEEE-------EESCCCTTTTTSHHHHH
T ss_pred EEECCCCCCCh---------------HHHHHHHHHHhcCCCCe---------EEEE-------EcCCCChhhHhhHHHHH
Confidence 9999988 632 14577777776543211 1111 11111100111245566
Q ss_pred HhhHhhhhhccCCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCccccc
Q psy3997 173 VLDLLVEEKSLPLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTS 236 (256)
Q Consensus 173 i~rRf~~~i~~~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~ 236 (256)
+.+|.. .+.+..++ +++....+...+......-.+..++.|++.++|+.....
T Consensus 130 i~sr~~-~~~~~~l~----------~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~ 182 (343)
T 1jr3_D 130 LANRSV-QVTCQTPE----------QAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALA 182 (343)
T ss_dssp HTTTCE-EEEECCCC----------TTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHH
T ss_pred HHhCce-EEEeeCCC----------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHH
Confidence 777764 45566666 444444444454433322244778888888888765443
No 133
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.83 E-value=1.3e-05 Score=63.92 Aligned_cols=28 Identities=25% Similarity=0.667 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+++.|+|.|+||+||||+++.+|+.++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999999864
No 134
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.83 E-value=1.4e-05 Score=64.16 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++.|+|.|+||+||||+++.+++.+|.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999999864
No 135
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.82 E-value=1.3e-05 Score=62.77 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|++.||||+||||+++.+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999999964
No 136
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.80 E-value=9.7e-06 Score=64.64 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+-++++||||+||||++..++..+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999977777653
No 137
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.80 E-value=2.3e-05 Score=61.90 Aligned_cols=28 Identities=29% Similarity=0.602 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++.|+|.|+||+||||+++.+++.++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567999999999999999999999864
No 138
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.79 E-value=1.2e-05 Score=63.46 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|+|.|+||+||||+++.+|+.+|.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346999999999999999999999975
No 139
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.79 E-value=2.2e-05 Score=63.90 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++..|+|.|+||+||||+++.+|+.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3678999999999999999999999864
No 140
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.79 E-value=1.3e-05 Score=71.06 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=26.4
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.++++..++++||||+||||++++++..++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 356678899999999999999999999864
No 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.78 E-value=4.9e-05 Score=63.44 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=31.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
..|..++|.||||+||||+++.+++.++. .++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~---------~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG---------NIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT---------CCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC---------CcEEEecHHH
Confidence 34678999999999999999999999853 3456666554
No 142
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.78 E-value=0.00016 Score=59.32 Aligned_cols=30 Identities=33% Similarity=0.341 Sum_probs=26.1
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+|+++...++++|+||+|||+++..+|...
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577888889999999999999999887653
No 143
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.77 E-value=1.5e-05 Score=62.65 Aligned_cols=27 Identities=44% Similarity=0.658 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|++.|+||+||||+++.+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 567999999999999999999999864
No 144
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.77 E-value=2.3e-05 Score=63.76 Aligned_cols=27 Identities=26% Similarity=0.689 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
...|+|.|+||+||||+++.+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 467999999999999999999999864
No 145
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.77 E-value=3.7e-05 Score=59.47 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.|++.||||+||||+++.+ +.+|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 46899999999999999999 77754
No 146
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.77 E-value=1.8e-05 Score=64.83 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=24.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.+..|+|.|+||+||||+++.+|+.++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34678999999999999999999999864
No 147
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.76 E-value=8e-05 Score=62.94 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=25.9
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++++...++++||||+|||++++.+|..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566677899999999999999999998653
No 148
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.76 E-value=3.2e-05 Score=64.24 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
+|..|+|.||||+||||+++.+++.++. ..++..++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~-----------~~is~~~~~r~ 66 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY-----------CHLSTGDLLRE 66 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC-----------EEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC-----------eEEecHHHHHH
Confidence 5778999999999999999999999854 55666555443
No 149
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.75 E-value=2.9e-05 Score=63.88 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..|+|.|+||+||||+++.+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567999999999999999999999864
No 150
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.75 E-value=2.4e-05 Score=61.73 Aligned_cols=27 Identities=37% Similarity=0.733 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..|+|.|+||+||||+++.+|+.+|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456899999999999999999999864
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.74 E-value=1.8e-05 Score=62.70 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-Hhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK-LSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~-l~~ 42 (256)
++.|+|.|+||+||||+++.+|+. +|.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 567999999999999999999999 654
No 152
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.73 E-value=2e-05 Score=63.14 Aligned_cols=28 Identities=46% Similarity=0.681 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|..|+|.|+||+||||+++.+++.++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567999999999999999999999864
No 153
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.73 E-value=3.4e-05 Score=62.66 Aligned_cols=36 Identities=25% Similarity=0.635 Sum_probs=30.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccchh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK 64 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~~ 64 (256)
.|+|.||||+||+|.|+.+|+.+|. ..++..+++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~-----------~~istGdllR~ 37 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF-----------VHISTGDILRE 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-----------EEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----------eEEcHHHHHHH
Confidence 4789999999999999999999864 67777776654
No 154
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.73 E-value=2.2e-05 Score=60.88 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|++.||||+||||+++.+++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999999864
No 155
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.70 E-value=8.9e-05 Score=59.94 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=31.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
..+..+++.|+||+||||+++.+++.++... +.+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~-----g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-----RVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-----CCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccc-----CCcEEEECChHH
Confidence 3466799999999999999999999986211 223566665443
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.70 E-value=8.1e-05 Score=62.60 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=25.1
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+++...+++.||+|+||||++++++..+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 344556899999999999999999998753
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.70 E-value=3.6e-05 Score=61.76 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++..+.|.||||+||||+++.++..+|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3567999999999999999999999864
No 158
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.69 E-value=0.00012 Score=57.82 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+..++|.|+||+||||+++.+|..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3567999999999999999999999864
No 159
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.68 E-value=2.8e-05 Score=61.34 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++.|++.||||+||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999987
No 160
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.68 E-value=2e-05 Score=67.20 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
.|..++|.||||+||||+++.++++++. .++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~---------~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG---------NVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT---------CCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEechHh
Confidence 4678999999999999999999998732 3466766444
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.68 E-value=2.7e-05 Score=60.51 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+|+|.|+||+||||+++.+|+.+|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999999975
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.67 E-value=2.7e-05 Score=61.82 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++.|+|.|+||+||||+++.+|+.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999999864
No 163
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.66 E-value=4.7e-05 Score=59.50 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..++|.||||+||||+++.++..+|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 456899999999999999999998864
No 164
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.66 E-value=0.00021 Score=62.28 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=27.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+++.+..-+++.|+||+|||+++..+|.....
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35666778999999999999999999988654
No 165
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.65 E-value=0.00017 Score=62.38 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++.+++.||+|+|||++++.+|+.++.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~ 31 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPC 31 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999999999999864
No 166
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.64 E-value=2.2e-05 Score=62.20 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=23.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+.+..+.|.||||+||||+++.++...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 446779999999999999999999874
No 167
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.63 E-value=6.7e-05 Score=58.27 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.|+|.|+||+||||+++.+|+.+|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999999864
No 168
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.62 E-value=3.4e-05 Score=62.85 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+..|+|.||||+||||+++.+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999999864
No 169
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.61 E-value=8.5e-05 Score=61.00 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+|++.|+||+|||+++-.+|..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45899999999999999999998854
No 170
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.60 E-value=3.7e-05 Score=64.27 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=23.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+++.||||+||||+|+.+|+.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5789999999999999999999864
No 171
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.59 E-value=6e-05 Score=60.94 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+|.||||+||||+++.+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999864
No 172
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.59 E-value=3e-05 Score=62.11 Aligned_cols=27 Identities=30% Similarity=0.664 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|+|.|+||+||||+++.+++.+|.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 567999999999999999999999854
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.58 E-value=4.2e-05 Score=63.41 Aligned_cols=27 Identities=33% Similarity=0.791 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|..+.|.||||+||||+++.+|+.+|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999999864
No 174
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.55 E-value=0.00024 Score=65.63 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
.+..|++.|.||+||||+++.+|+.++..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 45679999999999999999999999763
No 175
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.55 E-value=5.2e-05 Score=58.70 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+|.|+||+||||+++.+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999999864
No 176
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.55 E-value=8.5e-05 Score=65.33 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+...+++.||+|+||||+.++++..+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 3445889999999999999999998864
No 177
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.55 E-value=5.3e-05 Score=60.75 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++-|++.|+||+||||+++.+++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999875
No 178
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.54 E-value=5.6e-05 Score=61.17 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+|.||||+||||+++.+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999999854
No 179
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.54 E-value=3e-05 Score=60.92 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|+|.|+||+||||+++.+++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 567999999999999999999999875
No 180
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.54 E-value=0.00031 Score=63.74 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
...++|+||||+|||+|++.++.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 445899999999999999999987654
No 181
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.52 E-value=0.00028 Score=63.92 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=27.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+++++..-+++.|+||+|||+++..+|..+..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45677788999999999999999999998753
No 182
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.52 E-value=9.3e-05 Score=59.24 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|.+.|++|+||||+++.+|+ +|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 588999999999999999999 754
No 183
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.51 E-value=6.9e-05 Score=60.07 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=25.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.++..+.|.||+|+||||+++.+|..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467789999999999999999999986
No 184
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.49 E-value=7.5e-05 Score=60.00 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
.++.|+|.|+||+||||+++.+++.++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36779999999999999999999999863
No 185
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.48 E-value=8.2e-05 Score=59.83 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..|+|.|+||+||||+++.+++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 677999999999999999999999875
No 186
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.47 E-value=0.00024 Score=66.34 Aligned_cols=27 Identities=48% Similarity=0.700 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+.+++.||||||||+++.+++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999998754
No 187
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.47 E-value=0.0003 Score=60.55 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=25.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++..+++.||+|+||||++..+|..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34677999999999999999999998853
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.47 E-value=0.0002 Score=55.97 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.4
Q ss_pred CCceEEEEcCCCCcHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKA 35 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~ 35 (256)
.+.-+.+.||+|+||||+++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 356789999999999999994
No 189
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.46 E-value=0.00027 Score=61.46 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.|+|.||+|+|||+++..+|+.++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 57999999999999999999999864
No 190
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.45 E-value=0.00013 Score=60.29 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.+++.||+|+|||.++..++..++
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999998888763
No 191
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.44 E-value=0.00041 Score=62.70 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=27.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+++++..-+++.|+||+|||+++..+|.....
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46777778999999999999999999987653
No 192
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.44 E-value=0.00011 Score=64.93 Aligned_cols=29 Identities=21% Similarity=0.443 Sum_probs=24.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+...+++.||+|+||||++++++..+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 44566899999999999999999998754
No 193
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.43 E-value=9.5e-05 Score=66.33 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|.-|++.|+||+||||+++.+++.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3677999999999999999999998753
No 194
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.43 E-value=0.00022 Score=60.59 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
|+.|++.|+||+||||+++.+++.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC
Confidence 5679999999999999999999964
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.43 E-value=8.5e-05 Score=59.61 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..+.|.||+|+||||+++.+|. +|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 4588999999999999999998 654
No 196
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.43 E-value=0.00011 Score=61.33 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
...|.|.|++|+||||+++.+|+.+|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 567999999999999999999999975
No 197
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.41 E-value=0.00041 Score=62.57 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+|..+++.|+||+||||++..+|..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998864
No 198
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.40 E-value=5.7e-05 Score=66.16 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~ 44 (256)
.+++|.||||+||||+++++|+.++.++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4599999999999999999999998764
No 199
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.39 E-value=0.0001 Score=58.65 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=23.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|.|.|+||+||||+++.+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 4789999999999999999999964
No 200
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.39 E-value=0.00077 Score=58.06 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=32.1
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS 58 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~ 58 (256)
+++.+..-+++.|+||+|||+++..+|...... +.++++++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~------g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT------TCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc------CCeEEEEEC
Confidence 467777889999999999999999999876431 235555554
No 201
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.38 E-value=0.0001 Score=59.21 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..++.++|.||||+||||+++.+++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3467899999999999999999999873
No 202
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.35 E-value=0.0002 Score=56.19 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
+..+.|.|++|+||||+++.++..+.. .+.+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~------~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC------HGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH------TTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh------CCCcEEEECCh
Confidence 567899999999999999999998821 12356666653
No 203
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.35 E-value=1e-05 Score=73.27 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=64.6
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HHHHhhhhhcccccceEEEEeccc---cchhhccchhHHHHH-HHHHHHHHHHhcCCeE
Q psy3997 17 RVVLLHGPPGTGKTSLCKAV-AQKLSIRLQSKYKITEFIEINSHS---LFSKYFSESGKLVQK-MFNKIKEAVEYEESLV 91 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~i-A~~l~~~~~~~~~~~~~~~v~~~~---l~~~~~g~~~~~~~~-~f~~a~~~~~~~~~p~ 91 (256)
-++||.|+||| ||++|+++ ++.+. ...|....++. +...+.+.++..++. .+..| ...
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~p--------R~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LA--------dgG 302 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAP--------RGVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLA--------DGG 302 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCS--------SEEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHT--------TTS
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCC--------CeEEecCCCCCccCceEEEEcCCCcccCCCeeEEc--------CCC
Confidence 37999999999 99999999 66542 12222111110 110000000000000 01111 236
Q ss_pred EEEeCcchhhhhhhhcccCCCCCCcHHHHHHHHHHHHHchhhcCCCCCchhhhcccchhhHhhhhcCccCHHHH------
Q psy3997 92 CLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENF------ 165 (256)
Q Consensus 92 Ii~iDEid~l~~~r~~~~~~~~~~~~~~i~~~ll~~ld~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~i~~t~~------ 165 (256)
++|+||++.+.++ +...|++.|++-.-.-.|. .++... .+.+.+|.+. .+
T Consensus 303 vl~lDEIn~~~~~---------------~qsaLlEaMEe~~VtI~G~------~lparf-~VIAA~NP~~--~yd~~~s~ 358 (506)
T 3f8t_A 303 ILAVDHLEGAPEP---------------HRWALMEAMDKGTVTVDGI------ALNARC-AVLAAINPGE--QWPSDPPI 358 (506)
T ss_dssp EEEEECCTTCCHH---------------HHHHHHHHHHHSEEEETTE------EEECCC-EEEEEECCCC----CCSCGG
T ss_pred eeehHhhhhCCHH---------------HHHHHHHHHhCCcEEECCE------EcCCCe-EEEEEeCccc--ccCCCCCc
Confidence 8999999998543 6788888887533211121 121111 2222344442 11
Q ss_pred -HHHHHHHHhhHhh-hhhccCCCCCC
Q psy3997 166 -LIALEKTVLDLLV-EEKSLPLKRNT 189 (256)
Q Consensus 166 -~~~ld~ai~rRf~-~~i~~~~p~~~ 189 (256)
.-.|..++++||+ ..+..+.|+.+
T Consensus 359 ~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 359 ARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp GGCCSCHHHHTTCSEEEETTC-----
T ss_pred cccCCChHHhhheeeEEEecCCCChh
Confidence 1157789999996 45566777643
No 204
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.35 E-value=0.00022 Score=66.42 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++.++++||+|+|||++|+.+++..
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDH 171 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhch
Confidence 5679999999999999999998653
No 205
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.34 E-value=0.00012 Score=59.21 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+|.|+||+||||+++.+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999999864
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.34 E-value=0.00017 Score=57.44 Aligned_cols=25 Identities=20% Similarity=0.559 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++.|.|.|+||+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5779999999999999999999988
No 207
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.33 E-value=0.00024 Score=56.95 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 16 NRVVLLHGPPGTGKT-SLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 16 ~~~iLL~GppGtGKT-~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
.+-.++|||.|+||| +|.+++.+..-. +.+++.+++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEccc
Confidence 455888999999999 788888876532 3466777654
No 208
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.33 E-value=0.00017 Score=57.73 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..|.|.|++|+||||+++.+++.+|.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45889999999999999999998864
No 209
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.33 E-value=0.00026 Score=58.86 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=33.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccch
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS 63 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~~ 63 (256)
.+..|.+.|+||+||||+++.+++.++.+... ........++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d-~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhccc-ccCCceEEEecCcccc
Confidence 35679999999999999999999999864210 0012344566666553
No 210
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.33 E-value=0.00016 Score=62.24 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+.+++.||+|+|||+++..+|+.++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 3677899999999999999999999854
No 211
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.31 E-value=0.00022 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.|.|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999983
No 212
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.31 E-value=0.00062 Score=54.61 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=50.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc-------ccchhhcc------------------chh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH-------SLFSKYFS------------------ESG 70 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~-------~l~~~~~g------------------~~~ 70 (256)
...|++|+++|.||||.|-++|-+.-. +...+-|+..... .+...+ + +..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g----~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG----HGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH----TTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHH
Confidence 346999999999999999999887532 1122333322221 122222 1 012
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcchhhhhh
Q psy3997 71 KLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104 (256)
Q Consensus 71 ~~~~~~f~~a~~~~~~~~~p~Ii~iDEid~l~~~ 104 (256)
...+..++.+++.+. .....+|+|||+.....-
T Consensus 103 ~~a~~~l~~a~~~l~-~~~yDlvILDEi~~al~~ 135 (196)
T 1g5t_A 103 AACMAVWQHGKRMLA-DPLLDMVVLDELTYMVAY 135 (196)
T ss_dssp HHHHHHHHHHHHHTT-CTTCSEEEEETHHHHHHT
T ss_pred HHHHHHHHHHHHHHh-cCCCCEEEEeCCCccccC
Confidence 345666777776643 246789999999876543
No 213
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.29 E-value=0.00017 Score=58.64 Aligned_cols=27 Identities=44% Similarity=0.839 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..|.|.||||+||||+++.+++.+|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999999864
No 214
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.29 E-value=0.00022 Score=58.96 Aligned_cols=27 Identities=41% Similarity=0.711 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|..+.+.||||+||||+++.+|+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567999999999999999999999964
No 215
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.29 E-value=0.00017 Score=57.61 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++..+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46779999999999999999999876
No 216
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.29 E-value=0.00016 Score=58.98 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+|.|+||+||||+++.+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999999864
No 217
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.27 E-value=0.0015 Score=57.88 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=50.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc-------cchhh--------ccchh-HHH---HHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS-------LFSKY--------FSESG-KLV---QKM 76 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~-------l~~~~--------~g~~~-~~~---~~~ 76 (256)
...+++.||||+|||++++.||+.+.... +++.++++-+.+ +...+ ..+.. ..+ ...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~----~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH----PDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC----TTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC----CCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45599999999999999999999875421 233444443221 11110 01111 111 112
Q ss_pred HHHHHHHHHhcCCeEEEEeCcchhhhhhhhc
Q psy3997 77 FNKIKEAVEYEESLVCLLIDEIESLTRARES 107 (256)
Q Consensus 77 f~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~ 107 (256)
...|. .+.+.+...+|++|++.+++..-..
T Consensus 250 lt~AE-yfrd~G~dVLil~DslTR~A~A~re 279 (422)
T 3ice_A 250 IEKAK-RLVEHKKDVIILLDSITRLARAYNT 279 (422)
T ss_dssp HHHHH-HHHHTSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHH-HHHhcCCCEEEEEeCchHHHHHHHH
Confidence 22232 3344678889999999999865543
No 218
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.25 E-value=0.0001 Score=64.08 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=45.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccccc-----hh---hccchhHHHHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF-----SK---YFSESGKLVQKMFNKIKEAVE 85 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l~-----~~---~~g~~~~~~~~~f~~a~~~~~ 85 (256)
++...+++.||+|+||||++++++..+.. ....+.++..... .. ++...+...+..+..|-
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~-------~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL---- 237 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPK-------EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCL---- 237 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCT-------TSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHT----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcC-------CCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHh----
Confidence 34677999999999999999999998642 2233444432111 01 11001223333444333
Q ss_pred hcCCeEEEEeCcchh
Q psy3997 86 YEESLVCLLIDEIES 100 (256)
Q Consensus 86 ~~~~p~Ii~iDEid~ 100 (256)
...|.++++||.-.
T Consensus 238 -~~~p~ilildE~~~ 251 (330)
T 2pt7_A 238 -RMRPDRIILGELRS 251 (330)
T ss_dssp -TSCCSEEEECCCCS
T ss_pred -hhCCCEEEEcCCCh
Confidence 34899999999764
No 219
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.25 E-value=0.00027 Score=57.24 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..|.|.|++|+||||+++.++. +|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 56799999999999999999998 653
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00013 Score=58.00 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+..|.|.|++|+||||+++.+|+. |.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~ 33 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GY 33 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CC
Confidence 3667999999999999999999997 64
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.21 E-value=0.00023 Score=57.50 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 466789999999999999999999863
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.20 E-value=0.00026 Score=55.76 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.+-+.|.||+|+||||+++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4668999999999999999999975
No 223
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.18 E-value=0.00028 Score=56.30 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.|.+.|++|+||||+++.+|+.+|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 36899999999999999999999875
No 224
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.17 E-value=0.00023 Score=56.37 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l 40 (256)
-|.+.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999998
No 225
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.17 E-value=0.0007 Score=63.67 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
+..|+|.|+||+||||+++.+++.+.. .+.+++.++...
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~------~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVC------HGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEechHH
Confidence 567999999999999999999999821 122566766443
No 226
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.15 E-value=0.00026 Score=59.03 Aligned_cols=27 Identities=44% Similarity=0.844 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
...|.|.||+|+||||+++.+|+.+|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 456899999999999999999999975
No 227
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.14 E-value=0.0013 Score=59.68 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~ 43 (256)
.+..|++.|.||+||||+++.+|+.++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 35679999999999999999999998753
No 228
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.11 E-value=0.0014 Score=60.10 Aligned_cols=44 Identities=7% Similarity=-0.042 Sum_probs=32.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
+++.+..-+++.|+||+|||+++..+|....... +.++.+++..
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-----g~~vl~~s~E 280 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-----GKKVGLAMLE 280 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-----CCCEEEEESS
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-----CCcEEEEecc
Confidence 3566777899999999999999999999875420 2355665543
No 229
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.11 E-value=0.00036 Score=55.63 Aligned_cols=25 Identities=36% Similarity=0.715 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+.-+.|.||+|+||||+++.++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5668899999999999999999875
No 230
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.11 E-value=0.00025 Score=55.99 Aligned_cols=24 Identities=38% Similarity=0.901 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l 40 (256)
..+.|.||||+||||+++.++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 357899999999999999999754
No 231
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.11 E-value=0.00032 Score=60.40 Aligned_cols=27 Identities=30% Similarity=0.504 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++-|++.||+|+|||+++..+|+.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 456889999999999999999999863
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00033 Score=56.13 Aligned_cols=26 Identities=42% Similarity=0.621 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+++.+.|.||+|+||||+++.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45779999999999999999999876
No 233
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.09 E-value=0.00032 Score=56.30 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++..+.+.|+||+||||+++.+++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999999976
No 234
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.07 E-value=0.00044 Score=58.62 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..|.+.|+||+||||+++.++ .+|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 5679999999999999999999 5653
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.07 E-value=0.00036 Score=55.57 Aligned_cols=25 Identities=36% Similarity=0.708 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
|-|+|.||+|+||||+++.+.++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999988753
No 236
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.05 E-value=0.00033 Score=55.43 Aligned_cols=26 Identities=35% Similarity=0.692 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++.+.|.||+|+||||+++.++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999999874
No 237
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.05 E-value=0.00046 Score=61.44 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|++.||+|+|||+++..+|+.++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC
Confidence 567889999999999999999999864
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.02 E-value=0.00041 Score=55.87 Aligned_cols=27 Identities=41% Similarity=0.691 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+..+.+.||+|+||||+++.++..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 355688999999999999999999985
No 239
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.01 E-value=0.00048 Score=55.31 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+..+.|.||+|+||||+++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55688999999999999999999985
No 240
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.96 E-value=0.00063 Score=59.25 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++.|++.||+|+|||++++.+|..++.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 357899999999999999999999863
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.95 E-value=0.00061 Score=55.97 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.-|.+.||||+||||+++.+++.++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999999999985
No 242
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.95 E-value=0.00062 Score=54.97 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|..|.+.|++|+|||++++.+++.+|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457899999999999999999999864
No 243
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.94 E-value=0.00062 Score=55.91 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=25.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.+..|.|.|++|+||||+++.+|+.+|.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34567999999999999999999999864
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.94 E-value=0.00062 Score=54.71 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.++-+.|.||+|+|||||++.+++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356789999999999999999998763
No 245
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.94 E-value=0.00063 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||.|+||||+++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568899999999999999999987
No 246
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.93 E-value=0.0023 Score=57.64 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
+|+.|++.|++|+||||++-.+|..+.... +.++.-+++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-----G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKH-----KKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTS-----CCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCeEEEEecC
Confidence 467899999999999999999999986520 2345555554
No 247
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.91 E-value=0.00032 Score=56.32 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
-|.+.|++|+||||+++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999863
No 248
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.00045 Score=46.77 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=36.6
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 184 PLKRNTEVPNTYLHSNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 184 ~~p~~~e~~~~~~~~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
|+|+ .++|.+|++.++...... .+.+++.|++.|+| |||.||
T Consensus 1 plPd----------~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G------------~SGADi 42 (78)
T 3kw6_A 1 PPPN----------EEARLDILKIHSRKMNLT-RGINLRKIAELMPG------------ASGAEV 42 (78)
T ss_dssp CCCC----------HHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTT------------CCHHHH
T ss_pred CcCC----------HHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCC------------CCHHHH
Confidence 6899 999999999999876543 56789999999999 999998
No 249
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.90 E-value=0.00035 Score=64.27 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+.++++.||+|+||||++++++..+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467799999999999999999998774
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.90 E-value=0.00061 Score=54.77 Aligned_cols=26 Identities=31% Similarity=0.721 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||+|+||||+++.++..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35568899999999999999999986
No 251
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.90 E-value=0.0023 Score=59.31 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=30.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecccc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~l 61 (256)
+..|+|.|+||+||||+++.+++.++. .+.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~------~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA------RGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh------cCCeEEEECchHh
Confidence 467899999999999999999999874 1234566665443
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.90 E-value=0.0006 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+++.-+.|.||+|+||||+++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345668999999999999999999976
No 253
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.89 E-value=0.00076 Score=57.24 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=26.9
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++++..-+++.||||+|||++++.+|..+..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34566777999999999999999999998753
No 254
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.85 E-value=0.0023 Score=59.62 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhccccc-ceEEEEecccc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKI-TEFIEINSHSL 61 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~-~~~~~v~~~~l 61 (256)
+..|+|.|+||+||||+++++++.++.. + .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~------G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQ------GGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHH------CSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhccc------CCceEEEECcHHH
Confidence 4678999999999999999999999731 1 35677766544
No 255
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.85 E-value=0.00083 Score=57.70 Aligned_cols=28 Identities=36% Similarity=0.682 Sum_probs=24.8
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+++...+.|.||+|+|||||++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3456779999999999999999999987
No 256
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.83 E-value=0.00086 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+-.+++||+|+|||+.+..++..+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 35678899999999999998888874
No 257
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.82 E-value=0.00085 Score=55.43 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.-+-|.||+|+||||+++.++..+|.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 445889999999999999999999874
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.80 E-value=0.00093 Score=53.48 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+..+.+.||+|+||||+++.++..+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356689999999999999999999874
No 259
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.78 E-value=0.0031 Score=57.79 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.++.|++.|+||+||||++..+|..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999998864
No 260
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.77 E-value=0.00049 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+++++.||||+|||++|..+++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 367899999999999999999999864
No 261
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.73 E-value=0.0011 Score=54.15 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=23.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+...-+.|.||+|+|||||.+.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4466789999999999999999999763
No 262
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.72 E-value=0.003 Score=58.44 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~ 38 (256)
.+.+.++|++|+|||++|+.+++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57799999999999999999997
No 263
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.70 E-value=0.0012 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..|.+.|++|||||++++.+|+.+|.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 46899999999999999999999986
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.68 E-value=0.00062 Score=55.65 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=16.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH-HHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVA-QKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA-~~l 40 (256)
++.-+.|.||+|+||||+++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678999999999999999999 765
No 265
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.68 E-value=0.0012 Score=59.87 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..+++.|+||||||+++.+++..+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999998854
No 266
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.65 E-value=0.0029 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.+.+++.+|+|+|||.++-..+...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999888777654
No 267
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.65 E-value=0.00098 Score=54.84 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..+-+.||||+||||+++.+|+.++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCC
Confidence 34678999999999999999999865
No 268
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.64 E-value=0.0014 Score=56.20 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.++..+.+.||+|+||||+++.+|..+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999999875
No 269
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.63 E-value=0.001 Score=62.87 Aligned_cols=24 Identities=38% Similarity=0.786 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.-.|+.||||||||+++-.+...+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999998655444443
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.61 E-value=0.0013 Score=52.37 Aligned_cols=24 Identities=46% Similarity=0.801 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+.+.||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999884
No 271
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.61 E-value=0.0015 Score=55.62 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+.-|.+.||+|+||||+++.++..++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3566889999999999999999999874
No 272
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.60 E-value=0.0016 Score=55.89 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+..+.+.||+|+||||+++.+|..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3567999999999999999999998753
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.60 E-value=0.0021 Score=57.89 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+|..+++.||+|+||||++..+|..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999998854
No 274
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.59 E-value=0.0015 Score=65.55 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++.+.++|++|+|||+||+.+++..
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 5678999999999999999998864
No 275
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.58 E-value=0.0045 Score=52.87 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..+.+.|++|+||||++..+|..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 667889999999999999999998853
No 276
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.54 E-value=0.0018 Score=55.82 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=24.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+..+-+.||+|+||||+++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4466788999999999999999999875
No 277
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.52 E-value=0.01 Score=58.35 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..-+++.||.|+||||+.|.+|..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998643
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.51 E-value=0.0019 Score=55.18 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+..+++.||+|+||||++..+|..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999885
No 279
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.50 E-value=0.0018 Score=56.09 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++..+.+.||+|+||||+++.+|..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4667999999999999999999998753
No 280
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.49 E-value=0.0015 Score=55.65 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.-|.+.||+|+||||+++.+++.++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999886
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.49 E-value=0.0022 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+.+.+.||+|+||||+++.++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46789999999999999999999864
No 282
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.49 E-value=0.0022 Score=50.25 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+.+.+.|++|+||||++..++..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 456899999999999999999998853
No 283
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0019 Score=56.66 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.++..+.+.||+|+||||+++.+|..+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3466799999999999999999999875
No 284
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.47 E-value=0.0037 Score=56.47 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=33.1
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~ 59 (256)
+++.+..-+++.|+||+|||+++..+|...... +.++.+++..
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~------g~~vl~fSlE 234 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSLE 234 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc------CCEEEEEECC
Confidence 356677789999999999999999999887542 3356666553
No 285
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.47 E-value=0.0016 Score=53.55 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
|+-|.+.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999999983
No 286
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.43 E-value=0.0041 Score=53.66 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+++.+++.||+|+||||++..+|..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999998864
No 287
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.40 E-value=0.012 Score=57.74 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...+.+.||.|+||||+.+.+|..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 456899999999999999998854
No 288
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.39 E-value=0.0024 Score=55.22 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
|.-+-+.||+|+||||+++.++..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55688999999999999999999885
No 289
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.37 E-value=0.0085 Score=59.49 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.+.+.++||+|.|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 577999999999999999999964
No 290
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.36 E-value=0.0057 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=18.1
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCK-AVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~-~iA~~ 39 (256)
.+.+++.+|+|+|||..+- .+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 3679999999999998643 34444
No 291
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.36 E-value=0.0024 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.-.+++||.|+|||+++++|+..++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34578999999999999999999875
No 292
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.34 E-value=0.0029 Score=51.40 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.-|.+.|++|+||||+++.+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999864
No 293
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.33 E-value=0.0019 Score=59.98 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+..+.|.|++|+||||+++++|..++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 356789999999999999999999986
No 294
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.32 E-value=0.0024 Score=57.48 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.|+.|++.|+||+||||++..+|..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999998853
No 295
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.32 E-value=0.003 Score=51.63 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..|.+.|++|||||++++.+|+.+|.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 346889999999999999999999976
No 296
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.31 E-value=0.0024 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..+++||.|++|+|||++|.++.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3689999999999999999999985
No 297
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.30 E-value=0.0022 Score=58.93 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+..|+|.|.+|+||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999973
No 298
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.30 E-value=0.0025 Score=59.99 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...++.||||||||+++..++..+-
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999998888777653
No 299
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.29 E-value=0.0022 Score=52.90 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++...+.+.||+|+||||+.+.++..+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345568899999999999999999875
No 300
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.29 E-value=0.0019 Score=52.78 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.+.||+|+|||||.+.++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35568899999999999999999865
No 301
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.28 E-value=0.0022 Score=52.91 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++...+.+.||+|+||||+++.++..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345668999999999999999999875
No 302
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.25 E-value=0.0035 Score=51.76 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.-|.+.|++|+||||+++.+++.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999864
No 303
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.24 E-value=0.0031 Score=54.02 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+..+-|.||+|+||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999875
No 304
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.24 E-value=0.0036 Score=51.22 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.-|.+.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 556888999999999999999999865
No 305
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.24 E-value=0.0025 Score=52.29 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.-|.+.||+|+||||+++.+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999965
No 306
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.24 E-value=0.0018 Score=44.73 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=33.3
Q ss_pred hhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 198 SNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 198 ~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
.++|.+|++.+++..... .+.+++.|++.|+| |||.||
T Consensus 13 ~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G------------~SGADL 50 (86)
T 2krk_A 13 EEARLDILKIHSRKMNLT-RGINLRKIAELMPG------------ASGAEV 50 (86)
T ss_dssp HHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSS------------CCHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCC------------CCHHHH
Confidence 999999999999876543 56789999999999 999999
No 307
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.22 E-value=0.038 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...+.+.||.|+||||+.|.+|...
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4568999999999999999999853
No 308
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.22 E-value=0.0029 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++ ..+.+.||+|+||||+.+.++..+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 44 678899999999999999999875
No 309
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.21 E-value=0.0033 Score=57.40 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=24.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
..+..+.|.||+|+||||+++.||..+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 34667999999999999999999998753
No 310
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.20 E-value=0.001 Score=55.54 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.++-|.+.|++|+||||+++.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35678999999999999999999987
No 311
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.19 E-value=0.0037 Score=50.89 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++-|.+.|++|+||||.++.+++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 567899999999999999999999863
No 312
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.19 E-value=0.024 Score=50.17 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=49.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEecc-------ccchhhcc--------chhH-HH---HHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH-------SLFSKYFS--------ESGK-LV---QKMF 77 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~-------~l~~~~~g--------~~~~-~~---~~~f 77 (256)
..+++.|+||||||+++..||+..... .+++.++++-+. ++...+.| +... .+ ....
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~----~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~al 251 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAEN----HPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTL 251 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHH----CTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhc----CCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHH
Confidence 348999999999999999999987532 123344444332 12211111 1111 11 1122
Q ss_pred HHHHHHHHhcCCeEEEEeCcchhhhhhhhc
Q psy3997 78 NKIKEAVEYEESLVCLLIDEIESLTRARES 107 (256)
Q Consensus 78 ~~a~~~~~~~~~p~Ii~iDEid~l~~~r~~ 107 (256)
..| +.+.+.+...+|++|++-+++..-..
T Consensus 252 tiA-Eyfrd~G~dVLil~DslTR~A~A~rE 280 (427)
T 3l0o_A 252 EMA-KRLVEFNYDVVILLDSLTRLARVYNI 280 (427)
T ss_dssp HHH-HHHHHTTCEEEEEEECHHHHHHHHHH
T ss_pred HHH-HHHHHcCCCEEEecccchHHHHHHHH
Confidence 222 33344677889999999999865543
No 313
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.15 E-value=0.0028 Score=53.14 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||+|+|||||.+.++..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35568899999999999999999875
No 314
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.13 E-value=0.0032 Score=59.14 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+.+++.||||||||+++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999998888774
No 315
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.13 E-value=0.0028 Score=50.12 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
+|++|++|+|||++|..+|.. +. +.+|+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~---------~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-AP---------QVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CS---------SEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CC---------CeEEEecCC
Confidence 689999999999999999976 53 456776644
No 316
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.12 E-value=0.0033 Score=55.14 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
..-+.|.||+|+||||+.+.||...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4558899999999999999999975
No 317
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.11 E-value=0.0042 Score=50.40 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
-.+++||.|+|||+.+..++....
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~ 53 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQ 53 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 356889999999999988888764
No 318
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.11 E-value=0.0026 Score=51.68 Aligned_cols=26 Identities=46% Similarity=0.699 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.+.||.|+||||+.+.++..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35568899999999999999999875
No 319
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.11 E-value=0.0042 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...+++.|++|+|||+++.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5679999999999999999998754
No 320
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.11 E-value=0.0028 Score=52.42 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=23.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++...+.+.||+|+||||+.+.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999999875
No 321
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.09 E-value=0.0037 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
++...+.|.||+|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556889999999999999999986
No 322
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.08 E-value=0.0029 Score=52.84 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||+|+||||+.+.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35568899999999999999999875
No 323
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.08 E-value=0.0035 Score=52.07 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+...+.|.||+|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3556889999999999999999985
No 324
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.08 E-value=0.003 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+...+.+.||.|+||||+.+.++..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456688999999999999999998753
No 325
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.07 E-value=0.0032 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
....+.|.||+|+|||||++.++..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45568899999999999999999875
No 326
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.06 E-value=0.003 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||+|+||||+++.++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45668899999999999999999875
No 327
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.06 E-value=0.0039 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+.+++.|++|+|||+++++++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 328
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.06 E-value=0.0033 Score=52.63 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++...+.+.||+|+|||||++.++..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345668999999999999999999865
No 329
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.05 E-value=0.0043 Score=55.58 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+++.||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3478999999999999999999885
No 330
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.04 E-value=0.0041 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++.+.||+|+||||+.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999763
No 331
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.04 E-value=0.0021 Score=52.00 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=22.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
++...+.+.||+|+|||||++.++..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34566889999999999999999987
No 332
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.04 E-value=0.0034 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++...+.|.||+|+|||||++.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999999875
No 333
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.03 E-value=0.0032 Score=52.02 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
....+.|.||+|+||||+.+.++..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35568899999999999999999875
No 334
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.02 E-value=0.0026 Score=55.82 Aligned_cols=28 Identities=39% Similarity=0.707 Sum_probs=24.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++...+++.||+|+||||++++++..+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567899999999999999999999764
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0051 Score=48.08 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=22.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.....|++.|++|+|||+++.++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 336
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.01 E-value=0.0041 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...-+.|.||+|+||||+.+.||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34558899999999999999999875
No 337
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.01 E-value=0.0041 Score=54.55 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...-+.|.||+|+||||+.+.||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34568899999999999999999875
No 338
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.00 E-value=0.0039 Score=54.66 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...-+.|.||+|+||||+.+.||...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999865
No 339
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.99 E-value=0.0033 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||+|+||||+++.++..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 35568899999999999999999875
No 340
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.99 E-value=0.004 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l 40 (256)
..+.+.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999998753
No 341
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.99 E-value=0.0042 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...+.+.|++|+|||+|.+.++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 342
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.0029 Score=49.58 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.+.+.|++|+||||+++.++..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46789999999999999999999853
No 343
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.98 E-value=0.0034 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.+.||+|+|||||.+.++..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35568899999999999999999876
No 344
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.97 E-value=0.0038 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||.|+|||||.+.++..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35568899999999999999999875
No 345
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.96 E-value=0.0038 Score=52.35 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||.|+|||||.+.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45568899999999999999999865
No 346
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.96 E-value=0.0044 Score=54.77 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..-+.|.||+|+||||+.+.||....
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 45588999999999999999998753
No 347
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.96 E-value=0.0044 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...-+.|.||+|+||||+.+.||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34558899999999999999999865
No 348
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.95 E-value=0.0046 Score=59.93 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+..++.||||||||+++..++..+-
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999998888877653
No 349
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.93 E-value=0.0059 Score=49.51 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++-|.+.|++|+||||.++.+++.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999864
No 350
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.92 E-value=0.041 Score=51.03 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEeccc
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~~~ 60 (256)
-..+|+.|.+|+|||++++.|...+-.... -..++++-+++..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~s--P~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKST--PSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCC--CcceEEEEeCCCh
Confidence 357999999999999999998887643210 1246788888763
No 351
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.92 E-value=0.0053 Score=47.09 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~ 38 (256)
+.+..|++.|++|+|||++++++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4467899999999999999999976
No 352
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.92 E-value=0.0059 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
-.|-|.|..||||||+++.+++ +|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~ 34 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGA 34 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 4578999999999999999998 765
No 353
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.92 E-value=0.0044 Score=54.32 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...+.+.||+|+|||||++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999999874
No 354
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.92 E-value=0.0038 Score=52.46 Aligned_cols=26 Identities=31% Similarity=0.545 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+..-+.|.||+|+||||+++.++..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35568899999999999999999875
No 355
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.91 E-value=0.0038 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||.|+|||||.+.++..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 35568899999999999999999875
No 356
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.91 E-value=0.0038 Score=52.05 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.|.||+|+||||+.+.++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35568899999999999999999875
No 357
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.90 E-value=0.0045 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...-+.|.||+|+|||||.+.||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 35568899999999999999999875
No 358
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.90 E-value=0.0037 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...-+.|.||+|+||||+.+.||...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34568899999999999999999865
No 359
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.88 E-value=0.0053 Score=56.55 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=26.4
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 11 ~~~~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.+++...+++.||||+|||++++.++....
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3556677799999999999999999998763
No 360
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.87 E-value=0.0054 Score=56.50 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.7
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHH--HHHH
Q psy3997 12 IISWNRVVLLHGPPGTGKTSLCKAV--AQKL 40 (256)
Q Consensus 12 ~~~~~~~iLL~GppGtGKT~la~~i--A~~l 40 (256)
.+++...++|.||+|+||||+++.+ +...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4566778999999999999999994 4544
No 361
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.80 E-value=0.0075 Score=45.84 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
....|++.|++|+|||++++++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999753
No 362
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.0066 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.+.+++.|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999999864
No 363
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.79 E-value=0.013 Score=52.67 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.+++.+|+|+|||..+-.++..++
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~ 133 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999888877764
No 364
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.75 E-value=0.0067 Score=45.90 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999874
No 365
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.74 E-value=0.0067 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|++|+|||++++++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999865
No 366
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.73 E-value=0.0069 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
-.|++.|+||+|||++++++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 367
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.73 E-value=0.0061 Score=54.07 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=23.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...-+.|.||+|+||||+.+.||..+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345568999999999999999999854
No 368
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.73 E-value=0.0061 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+..|++.|++|+|||++++++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999864
No 369
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.72 E-value=0.0038 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...-+.|.||+|+||||+.+.||...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999865
No 370
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.71 E-value=0.0061 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..+.+.|+||+|||++.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999863
No 371
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.71 E-value=0.013 Score=49.76 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
.+..+.+.|++|+||||++..+|..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667888999999999999999998753
No 372
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.007 Score=58.66 Aligned_cols=24 Identities=42% Similarity=0.767 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+..++.||||||||+++..++..+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999877766554
No 373
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.67 E-value=0.0052 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~ 38 (256)
..+++.|+||+|||+|++.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999987
No 374
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.67 E-value=0.0058 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
-.|++.|++|+|||++++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 375
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.64 E-value=0.0059 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+...+.+.||.|+||||+.+.++..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35568899999999999999999875
No 376
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.64 E-value=0.0065 Score=46.36 Aligned_cols=24 Identities=50% Similarity=0.600 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+..|++.|+||+|||+|++++...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998754
No 377
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.64 E-value=0.0089 Score=48.08 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...+++.|++|+|||+++..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 56788999999999999999998863
No 378
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.63 E-value=0.0047 Score=50.41 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.1
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.+.+.-+.|.||.|+||||+++.++..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 344566889999999999999999987
No 379
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.62 E-value=0.0093 Score=45.39 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.-.+++||.|+|||++..+|.-.+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34578999999999999999998773
No 380
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.0062 Score=51.03 Aligned_cols=25 Identities=40% Similarity=0.721 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...+.+.||+|+||||+.+.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4558899999999999999999875
No 381
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.59 E-value=0.0072 Score=46.39 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998864
No 382
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.59 E-value=0.0083 Score=45.46 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.-.|++.|++|+|||++++++...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999875
No 383
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.59 E-value=0.0092 Score=51.82 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...+.+.||||+||||+.++++..+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 45688999999999999999998763
No 384
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.58 E-value=0.062 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVA 37 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA 37 (256)
...+++.||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4679999999999999999993
No 385
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.58 E-value=0.0084 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999754
No 386
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.54 E-value=0.0075 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999999853
No 387
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.54 E-value=0.0071 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 388
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.54 E-value=0.0071 Score=46.93 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+..+++.|++|+|||++++.++..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999863
No 389
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.51 E-value=0.022 Score=46.73 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
.-.+++||.|+|||+.+-..+....
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~ 44 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQ 44 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4477889999999987766666553
No 390
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.49 E-value=0.0095 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999863
No 391
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.48 E-value=0.016 Score=51.90 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
++..+.+.|++|+||||++..+|..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999999864
No 392
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.47 E-value=0.0089 Score=46.14 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...+.+.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999864
No 393
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0087 Score=45.94 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
....|++.|++|+|||++++++...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3567999999999999999998764
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.46 E-value=0.01 Score=51.76 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+..|.+.|+||+||||++..++..+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998873
No 395
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.46 E-value=0.0089 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999999764
No 396
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.46 E-value=0.01 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|++|+|||++++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 397
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.44 E-value=0.0088 Score=45.40 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~ 38 (256)
.|++.|+||+|||++++++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 398
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.44 E-value=0.01 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~ 39 (256)
.|++.|++|+|||++++++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999764
No 399
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.0084 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~ 38 (256)
..|++.|++|+|||++++++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 400
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.42 E-value=0.0053 Score=52.68 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
++...+.+.||+|+||||+++.++..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 446678999999999999999999875
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.42 E-value=0.01 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++++...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999863
No 402
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.41 E-value=0.0042 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...+.+.|++|+|||+|.++++...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458999999999999999987643
No 403
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0099 Score=53.90 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...-+.+.||+|+|||||++.++....
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 356689999999999999999999753
No 404
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.40 E-value=0.0092 Score=45.72 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999875
No 405
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.40 E-value=0.011 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+..|++.|++|+|||+|++++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999875
No 406
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.39 E-value=0.01 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~ 38 (256)
...|++.|+||+|||++++++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999986
No 407
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.38 E-value=0.0086 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+-.|++.|++|+|||++++++...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999864
No 408
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.38 E-value=0.01 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|++|+|||++++++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 409
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.36 E-value=0.0088 Score=45.25 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~ 38 (256)
-.+++.|+||+|||++++++.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999864
No 410
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.35 E-value=0.0094 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 411
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.34 E-value=0.011 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...-+-+.||+|+|||||++.++...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34558899999999999999999865
No 412
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.33 E-value=0.013 Score=46.95 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
+.-.+++||.|+|||++..+|.-.++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 345789999999999999999988864
No 413
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.32 E-value=0.066 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...+.+.||.|+||||+.|.+|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4668999999999999999999864
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.32 E-value=0.01 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356999999999999999999864
No 415
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.31 E-value=0.012 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999865
No 416
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.31 E-value=0.012 Score=45.84 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|++|+|||+++.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 417
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.30 E-value=0.0091 Score=45.75 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999999854
No 418
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.30 E-value=0.01 Score=49.60 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|.|.|+||+|||++.+++...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999764
No 419
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.30 E-value=0.014 Score=44.90 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999998864
No 420
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.29 E-value=0.012 Score=45.97 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++++...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356999999999999999999874
No 421
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.26 E-value=0.011 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999998765
No 422
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.24 E-value=0.013 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.24 E-value=0.013 Score=45.93 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 567999999999999999999874
No 424
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.22 E-value=0.012 Score=45.36 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999864
No 425
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.20 E-value=0.012 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 426
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.17 E-value=0.0093 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~ 38 (256)
.+..|++.|++|+|||++++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 467799999999999999998874
No 427
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.17 E-value=0.028 Score=57.45 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 14 ~~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
++...+.+.||+|+||||+++.+.+...
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4567799999999999999999998764
No 428
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.16 E-value=0.014 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|++|+|||++++++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 429
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.16 E-value=0.012 Score=45.03 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998753
No 430
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.14 E-value=0.014 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+.|.||+|+|||||++.||+...
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 3488999999999999999999864
No 431
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.11 E-value=0.013 Score=51.12 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...+.|.||+|+||||+.+.|++...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34489999999999999999999874
No 432
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.10 E-value=0.015 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 567999999999999999999753
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.10 E-value=0.015 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 434
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.10 E-value=0.014 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
-.|++.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999988764
No 435
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.09 E-value=0.016 Score=50.45 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...+.|.|+||+||||+.++++..+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 45688999999999999999998763
No 436
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.07 E-value=0.013 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~ 39 (256)
.|++.|++|+|||++++++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5799999999999999999864
No 437
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.06 E-value=0.013 Score=46.15 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999765
No 438
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.016 Score=45.22 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
.-.|++.|++|+|||+|++.+...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4569999999999999999998753
No 439
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.04 E-value=0.014 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999998864
No 440
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.03 E-value=0.016 Score=46.08 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++.+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999999874
No 441
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.03 E-value=0.015 Score=45.05 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
....|++.|++|+|||++++++...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998864
No 442
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.03 E-value=0.016 Score=45.18 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 443
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.01 E-value=0.016 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 444
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.00 E-value=0.016 Score=45.04 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...+++.|++|+|||++++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999998764
No 445
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.00 E-value=0.015 Score=45.15 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...|++.|+||+|||+|++.+.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45699999999999999988876543
No 446
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.017 Score=45.05 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 457999999999999999999863
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.99 E-value=0.014 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 448
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.016 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 449
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.98 E-value=0.014 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|++|+|||+|++++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999998753
No 450
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.98 E-value=0.028 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..++++.||+|+|||++++.++..+-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999998763
No 451
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.97 E-value=0.016 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~ 38 (256)
...|++.|++|+|||+|++++..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45699999999999999999984
No 452
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=94.97 E-value=0.012 Score=40.72 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=32.8
Q ss_pred hhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 198 SNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 198 ~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
.+.|.+|++.++...... .+.+++.|++.|+| |||.||
T Consensus 3 ~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G------------~SGADl 40 (88)
T 3vlf_B 3 LEGRANIFRIHSKSMSVE-RGIRWELISRLCPN------------STGAEL 40 (88)
T ss_dssp SSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSS------------CCHHHH
T ss_pred HHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCC------------CcHHHH
Confidence 678999999988776543 66889999999999 999998
No 453
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.017 Score=44.92 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 454
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.97 E-value=0.018 Score=49.93 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
....+.+.|+||+||||++..++..+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356688999999999999999998764
No 455
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.97 E-value=0.019 Score=47.26 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
...+++.|.+|+||||++..+|..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45688899999999999999999875
No 456
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.96 E-value=0.017 Score=45.70 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
....|++.|++|+|||+|+.++...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999853
No 457
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.95 E-value=0.017 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999875
No 458
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.95 E-value=0.012 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999874
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.94 E-value=0.017 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 460
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.93 E-value=0.017 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.92 E-value=0.02 Score=46.04 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+=|.+-|+.|+||||.++.+++.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3478899999999999999999984
No 462
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.91 E-value=0.014 Score=47.66 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|+|.|++|+|||++++++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 457999999999999999999864
No 463
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.90 E-value=0.035 Score=43.72 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=25.1
Q ss_pred eEEEE-cCCCCcHHHHHHHHHHHHhhhhhcccccceEEEEec
Q psy3997 18 VVLLH-GPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS 58 (256)
Q Consensus 18 ~iLL~-GppGtGKT~la~~iA~~l~~~~~~~~~~~~~~~v~~ 58 (256)
.|.++ +-.|+|||+++-.+|..+.. .+.++..+++
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~------~g~~vlliD~ 38 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSR------SGYNIAVVDT 38 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHH------TTCCEEEEEC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHH------CCCeEEEEEC
Confidence 34455 67889999999999999875 2335555554
No 464
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.89 E-value=0.017 Score=45.50 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456999999999999999999874
No 465
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.87 E-value=0.017 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~ 38 (256)
...|++.|++|+|||++++.+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 56799999999999999999864
No 466
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.019 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~ 38 (256)
....|++.|++|+|||++.+++..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999999985
No 467
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.86 E-value=0.018 Score=50.49 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...+.|.||||+|||||+++++...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4568999999999999999999764
No 468
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.86 E-value=0.015 Score=45.97 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~ 38 (256)
+..|++.|++|+|||++++++..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999999875
No 469
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.85 E-value=0.017 Score=46.07 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999874
No 470
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.018 Score=45.70 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998864
No 471
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.82 E-value=0.018 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998764
No 472
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.82 E-value=0.015 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++.+...
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999998763
No 473
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.80 E-value=0.015 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~ 39 (256)
+.|.||+|+|||||++.|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 474
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=94.80 E-value=0.011 Score=40.30 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=32.6
Q ss_pred hhhHHHHHHHhcCCCcccccchhHHHHHHhCCCCcccccCCCccccccccc
Q psy3997 198 SNQRIHIYLMFCGTSYPLQHSKHFTELVQSHPGRCKVTSDDSTLNFSFSSL 248 (256)
Q Consensus 198 ~~~R~~i~~~~~~~~~~~~~~~~~~~l~~~t~g~~~~~~~~~~~~~~~~~~ 248 (256)
.++|.+|++.+++..... .+.+++.|++.|+| |||.||
T Consensus 3 ~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G------------~SGADi 40 (83)
T 3aji_B 3 RRQKRLIFSTITSKMNLS-EEVDLEDYVARPDK------------ISGADI 40 (83)
T ss_dssp HHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCC------------CCHHHH
T ss_pred HHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCC------------CCHHHH
Confidence 688999999999776543 56789999999999 999999
No 475
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.79 E-value=0.015 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.-.|.+.||+|+|||||++.++..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 456799999999999999998754
No 476
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.76 E-value=0.015 Score=49.89 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..+|+|+.|++|+|||++|..+.+.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3688999999999999999988663
No 477
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.72 E-value=0.021 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|+||+|||+|.+.++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999853
No 478
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.68 E-value=0.024 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l~ 41 (256)
..+.|.||+|+||||+.++++..+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 6788999999999999999998764
No 479
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.68 E-value=0.016 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++++...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.67 E-value=0.02 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
.++++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 678999999999999999999885
No 481
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.63 E-value=0.0072 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLS 41 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~ 41 (256)
+.+.||+|+||||+.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 56789999999999999999874
No 482
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.61 E-value=0.022 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
....|++.|++|+|||++++.+...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999854
No 483
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.60 E-value=0.018 Score=47.84 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+.|.+.|+||+|||++..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999764
No 484
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.022 Score=45.10 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
+..|++.|++|+|||++++++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999863
No 485
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.023 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~ 39 (256)
..|++.|++|+|||++++.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999875
No 486
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.59 E-value=0.019 Score=46.40 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+++.++...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999764
No 487
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.58 E-value=0.022 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...+.|.||+|+|||||.++++ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4568899999999999999999 54
No 488
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.55 E-value=0.026 Score=44.99 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q psy3997 19 VLLHGPPGTGKTSLCKAVAQKLSI 42 (256)
Q Consensus 19 iLL~GppGtGKT~la~~iA~~l~~ 42 (256)
|.+-|+-|+||||.++.+++.+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678899999999999999999864
No 489
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.54 E-value=0.032 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 18 ~iLL~GppGtGKT~la~~iA~~l 40 (256)
++++..|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999888776654
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.51 E-value=0.013 Score=45.23 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=10.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998754
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.50 E-value=0.021 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999864
No 492
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.50 E-value=0.023 Score=44.81 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999998753
No 493
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.49 E-value=0.023 Score=46.84 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
....|++.|+||+|||++..++...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999864
No 494
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.48 E-value=0.016 Score=49.31 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
...+.+.||+|+||||+.++++...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4568899999999999999999764
No 495
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.47 E-value=0.025 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||++++.+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 356999999999999999999753
No 496
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.44 E-value=0.018 Score=44.68 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q psy3997 15 WNRVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 15 ~~~~iLL~GppGtGKT~la~~iA~ 38 (256)
....|++.|++|+|||++++++..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 366799999999999999999853
No 497
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.42 E-value=0.026 Score=52.17 Aligned_cols=28 Identities=39% Similarity=0.547 Sum_probs=24.0
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 13 ~~~~~~iLL~GppGtGKT~la~~iA~~l 40 (256)
+.+...+.|.||.|+|||||++.++..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456678999999999999999999865
No 498
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.40 E-value=0.025 Score=44.87 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q psy3997 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (256)
Q Consensus 16 ~~~iLL~GppGtGKT~la~~iA~~ 39 (256)
...|++.|++|+|||+|++.+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 499
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.39 E-value=0.019 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQ 38 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~ 38 (256)
..|++.|+||+|||+|++.++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999863
No 500
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.38 E-value=0.19 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHH
Q psy3997 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (256)
Q Consensus 17 ~~iLL~GppGtGKT~la~~iA~~l 40 (256)
..+++.|++|+|||+|+..+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeeeeecCCCCChHHHHHHHHHhh
Confidence 348999999999999999998864
Done!