RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3997
(256 letters)
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 97.6 bits (243), Expect = 3e-23
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
+ R +LL+GPPGTGKT + +AVA + F IN + SK ES
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAF---------FFLINGPEIMSKLAGESESN 285
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
++K F +EA + ++ + IDE++++ RE E R+V+ +LT +D LK
Sbjct: 286 LRKAF---EEAEKNAPAI--IFIDELDAIAPKREKTHGEVER----RIVSQLLTLMDGLK 336
Query: 133 KKS 135
+++
Sbjct: 337 QRA 339
Score = 87.2 bits (216), Expect = 9e-20
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL +GPPG GKT L KA+A + FI I L + +F ES V+++F+
Sbjct: 514 VLFYGPPGCGKTLLAKAIANECQAN---------FISIKGPELLTMWFGESEANVREIFD 564
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQID 129
K ++A + L DE++S+ +AR G RV+N +LT++D
Sbjct: 565 KARQA-----APCVLFFDELDSIAKARGGN-IGDGGGAADRVINQILTEMD 609
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 88.3 bits (219), Expect = 7e-21
Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+ + G G GK+ C+ V +K+ I I +++ L S E KL+++ +
Sbjct: 39 LGIWGGKGQGKSFQCELVFRKMGI---------NPIMMSAGELESGNAGEPAKLIRQRYR 89
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQI 128
+ E + + ++ CL I+++++ T ++VNA L I
Sbjct: 90 EAAEIIR-KGNMCCLFINDLDAGAGRMGGTTQYTV---NNQMVNATLMNI 135
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 87.5 bits (217), Expect = 5e-20
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL+GPPGTGKT + +AVA + F IN + SK ES ++K F
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGA---------FFFLINGPEIMSKLAGESESNLRKAF- 290
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
+EA + +++ IDE++++ RE E R+V+ +LT +D LK+++
Sbjct: 291 --EEAEKNAPAII--FIDELDAIAPKREKTHGEVE----RRIVSQLLTLMDGLKQRA 339
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 85.1 bits (211), Expect = 2e-19
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 17/121 (14%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL GPPGTGK+ L KAVA ++ + F I+S L SK+ ES KLV+ +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVA--------TEANNSTFFSISSSDLVSKWLGESEKLVKNL 97
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKST 136
F A E + S++ IDEI+SL +R + +E + R+ L Q+ + +
Sbjct: 98 FQL---ARENKPSII--FIDEIDSLCGSRSE--NESEAAR--RIKTEFLVQMQGVGVDND 148
Query: 137 G 137
G
Sbjct: 149 G 149
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 84.7 bits (210), Expect = 2e-19
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 26/125 (20%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE----FIEINSHSLFSKYFSESGKL 72
+LL+GPPGTGK+ L KAVA TE F ++S L SK+ ES KL
Sbjct: 52 SGILLYGPPGTGKSYLAKAVA-------------TEANSTFFSVSSSDLVSKWMGESEKL 98
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
V+++F A E + S++ ID++++LT R +E S R+ +L Q++ +
Sbjct: 99 VKQLFAM---ARENKPSII--FIDQVDALTGTRGE--GESEASR--RIKTELLVQMNGVG 149
Query: 133 KKSTG 137
S G
Sbjct: 150 NDSQG 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 83.9 bits (208), Expect = 2e-19
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
+ +LL GPPG GKT L +AVA + F+ I++ SL SKY + KLV+ +
Sbjct: 55 KGLLLFGPPGNGKTLLARAVAT------ECS---ATFLNISAASLTSKYVGDGEKLVRAL 105
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKST 136
F A + S++ IDE++SL R S S E S R+ L + D L
Sbjct: 106 FAV---ARHMQPSII--FIDEVDSLLSERSS--SEHEASR--RLKTEFLVEFDGLPGNPD 156
Query: 137 G 137
G
Sbjct: 157 G 157
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 83.7 bits (207), Expect = 7e-19
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
+ +LL GPPGTGKT + K +A QS F I++ SL SK+ E K+V+ +
Sbjct: 118 KGILLFGPPGTGKTLIGKCIAS------QSG---ATFFSISASSLTSKWVGEGEKMVRAL 168
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
F A + +++ IDEI+SL R E R+ L Q+D S
Sbjct: 169 FAV---ARCQQPAVI--FIDEIDSLLSQR----GDGEHESSRRIKTEFLVQLDGATTSS 218
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 82.2 bits (204), Expect = 1e-18
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 35/128 (27%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE----FIEINSHSLFSKYFSESGKLVQ 74
VLL GPPG GKT L KAVA E FI + L + Y ES + V+
Sbjct: 47 VLLAGPPGCGKTLLAKAVA-------------NESGLNFISVKGPELLNMYVGESERAVR 93
Query: 75 KMFNKIKEAVEYEESLVCLL-IDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKK 133
++F + K + C++ DE+++L R T S RVVN +LT++D
Sbjct: 94 QVFQRAKNSAP------CVIFFDEVDALCPRRSD--RETGASV--RVVNQLLTEMD---- 139
Query: 134 KSTGLSGR 141
GL R
Sbjct: 140 ---GLEAR 144
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 82.3 bits (204), Expect = 1e-18
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL+GPPGTGKT L KAVA + + FI + L K+ E LV+ +F
Sbjct: 54 ILLYGPPGTGKTLLAKAVATETN---------ATFIRVVGSELVKKFIGEGASLVKDIF- 103
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQID 129
K A E S++ IDEI+++ R ++G + + R + +L ++D
Sbjct: 104 --KLAKEKAPSII--FIDEIDAIAAKRTDALTGGD-REVQRTLMQLLAEMD 149
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 83.0 bits (205), Expect = 1e-18
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL GPPG GKT L KAVA +S F I++ SL SKY E KLV+ +
Sbjct: 149 RGLLLFGPPGNGKTMLAKAVAA------ESN---ATFFNISAASLTSKYVGEGEKLVRAL 199
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKST 136
F A E + S++ ID+++SL R E R+ L + D ++
Sbjct: 200 FAV---ARELQPSII--FIDQVDSLLCER----REGEHDASRRLKTEFLIEFDGVQSAGD 250
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 81.9 bits (203), Expect = 2e-18
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 29/118 (24%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE----FIEINSHSLFSKYFSESGKLVQ 74
VL +GPPG GKT L KA+A E FI I L + +F ES V+
Sbjct: 52 VLFYGPPGCGKTLLAKAIA-------------NECQANFISIKGPELLTMWFGESEANVR 98
Query: 75 KMFNKIKEAVEYEESLVCLL-IDEIESLTRARESVMSGTEPSDGV--RVVNAVLTQID 129
++F+K ++A C+L DE++S+ +AR + G RV+N +LT++D
Sbjct: 99 EIFDKARQAAP------CVLFFDELDSIAKARGGNIGD---GGGAADRVINQILTEMD 147
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 79.2 bits (195), Expect = 3e-17
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 17/121 (14%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +LL GPPGTGK+ L KAVA ++ + F I+S L SK+ ES KLV+ +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVA--------TEANNSTFFSISSSDLVSKWLGESEKLVKNL 219
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKST 136
F A E + S++ IDEI+SL +R + +E + R+ L Q+ + +
Sbjct: 220 FQL---ARENKPSII--FIDEIDSLCGSRSE--NESEAAR--RIKTEFLVQMQGVGVDND 270
Query: 137 G 137
G
Sbjct: 271 G 271
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 77.5 bits (191), Expect = 4e-17
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGK--LVQKM 76
VLL GPP +GKT+L +A++ + FI+I S + SE+ K ++K+
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNF---------PFIKICSPDKMIGF-SETAKCQAMKKI 116
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKST 136
F +A Y+ L C+++D+IE L G S+ V+ A+L + + +
Sbjct: 117 F---DDA--YKSQLSCVVVDDIERLLDYVP---IGPRFSN--LVLQALLVLLKKAPPQGR 166
Query: 137 GL 138
L
Sbjct: 167 KL 168
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 78.3 bits (193), Expect = 6e-17
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 18/121 (14%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
+LL+GPPGTGK+ L KAVA + + + F ++S L SK+ ES KLV+++
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEAN---------STFFSVSSSDLVSKWMGESEKLVKQL 135
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKST 136
F A E + S++ ID++++LT R +E S R+ +L Q++ + S
Sbjct: 136 FAM---ARENKPSII--FIDQVDALTGTRGE--GESEASR--RIKTELLVQMNGVGNDSQ 186
Query: 137 G 137
G
Sbjct: 187 G 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 2e-11
Identities = 38/259 (14%), Positives = 70/259 (27%), Gaps = 78/259 (30%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKI----------TEFIEINSHSLFSKY 65
+ VL+ G G+GKT + V ++ + +KI E + L +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 66 FSESGKLVQKMFNKIKEAVEYEESLV----------CLLI-DEIESLTRARESVMSGTEP 114
N + L CLL+ +++
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------------- 255
Query: 115 SDGVRVVNAVLTQIDQLKKKSTGLSGRTL---RKIPFLTFVKYISNNSVSMENFLIALEK 171
+ NA LS + L R F+ + +S+++ + L
Sbjct: 256 ---AKAWNAF------------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 172 T-VLDLL-----VEEKSLP-----------------LKRNTEVPNTYLHSN--QRIHIYL 206
V LL + LP ++ + + H N + I
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 207 MFCGTSYPLQHSKHFTELV 225
P ++ K F L
Sbjct: 361 SSLNVLEPAEYRKMFDRLS 379
Score = 40.2 bits (93), Expect = 6e-04
Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 70/241 (29%)
Query: 36 VAQKLSIRLQSKYKITE-FIE-----INSHSLFSKYFSESGKLV--QKMFNKIKEAVEYE 87
+ + + +T +IE N + +F+KY V + + K+++A
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------VSRLQPYLKLRQA---- 143
Query: 88 ESLVCLLIDEIESLTRARESV---MSGTEPSDGVRVVNAVLTQIDQLKKKSTGLSGRTLR 144
+ L A+ + + G+ + + LS +
Sbjct: 144 ----------LLELRPAKNVLIDGVLGSGKT--------WVA-------LDVCLSYKVQC 178
Query: 145 KIPF----LTFVKYISNNSV--SMENFLIALEKTVLDLLVEEKSLPLKRNTEVPNTYLHS 198
K+ F L S +V ++ L ++ + S +K L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAEL-- 234
Query: 199 NQRIHIYLMFCGTSYP-----LQHSKHFTELVQSHPGRCK--VTSDDSTLNFSFSSLAVQ 251
+R+ Y L + ++ + + CK +T+ + S+
Sbjct: 235 -RRL-----LKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 252 H 252
H
Sbjct: 288 H 288
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 53.3 bits (128), Expect = 2e-08
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN-----SHSLFSKYFSE--S 69
R +L+GPPG GKT+ VAQ+L Y + +E N S +L +
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQEL------GY---DILEQNASDVRSKTLLNAGVKNALD 128
Query: 70 GKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104
V F +EA +++DE++ ++
Sbjct: 129 NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG 163
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 52.1 bits (124), Expect = 4e-08
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 24/142 (16%)
Query: 20 LLHGPPGTGKTSLCKAVAQKL-SIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
G PGTGKT++ +A L + K + + L +Y + +++
Sbjct: 71 SFTGNPGTGKTTVALKMAGLLHRLGYVRKGH---LVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTE------------PSDGVRVVNAVLT 126
+ V L IDE L R G E D V ++
Sbjct: 128 RAMGGV--------LFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179
Query: 127 QIDQLKKKSTGLSGRTLRKIPF 148
+++ + + G R I F
Sbjct: 180 RMENFFQSNPGFRSRIAHHIEF 201
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 51.1 bits (122), Expect = 1e-07
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQK 75
R VLL GPPGTGKT+L A+AQ+L ++ F + ++S ++ L++
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSKVP-------FCPMVGSEVYSTEIKKTEVLMEN 115
Query: 76 MFNKIKEAVEYEESLVCLLIDEIESLTRARE------------SVMSGTEPSDGVRVVNA 123
I ++ + + E+ LT V+ G + + G + +
Sbjct: 116 FRRAIGLRIKETKEVY---EGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKL 172
Query: 124 VLTQIDQLKKK 134
+ + L+K+
Sbjct: 173 DPSIFESLQKE 183
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 47.7 bits (113), Expect = 1e-06
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------------- 65
+ ++G GTGKT++ K V KL + K+K + IN+ + + Y
Sbjct: 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLGKFK---HVYINTRQIDTPYRVLADLLESLDVK 104
Query: 66 FSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTR 103
+G + +++ ++ +AV S V +++DEI++ +
Sbjct: 105 VPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK 142
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 46.2 bits (110), Expect = 3e-06
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG-KLVQKMF 77
VLL GPPG GKT L +AVA + + FI S S F + F G V+ +F
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARV---------PFITA-SGSDFVEMFVGVGAARVRDLF 125
Query: 78 NKIKEAVEYEESLVCLL-IDEIESLTRARESVMSG 111
K C++ IDEI+++ R R S + G
Sbjct: 126 ETAKRHAP------CIVFIDEIDAVGRKRGSGVGG 154
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 45.8 bits (109), Expect = 4e-06
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 18/95 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG-KLVQKMF 77
VL+ GPPGTGKT L KA+A + + F I S S F + F G V+ MF
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKV---------PFFTI-SGSDFVEMFVGVGASRVRDMF 97
Query: 78 NKIKEAVEYEESLVCLL-IDEIESLTRARESVMSG 111
+ K+A C++ IDEI+++ R R + + G
Sbjct: 98 EQAKKAAP------CIIFIDEIDAVGRQRGAGLGG 126
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 45.8 bits (109), Expect = 4e-06
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG-KLVQKMF 77
VLL GPPG GKT L +AVA + + FI S S F + F G V+ +F
Sbjct: 52 VLLVGPPGVGKTHLARAVAGEARV---------PFITA-SGSDFVEMFVGVGAARVRDLF 101
Query: 78 NKIKEAVEYEESLVCLL-IDEIESLTRARESVMSG 111
K C++ IDEI+++ R R S + G
Sbjct: 102 ETAKRHAP------CIVFIDEIDAVGRKRGSGVGG 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 45.6 bits (107), Expect = 6e-06
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 18/96 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY------------- 65
L G PGTGKT + + + + K F+ IN +
Sbjct: 47 ATLLGRPGTGKTVTLRKLWEL----YKDKTTA-RFVYINGFIYRNFTAIIGEIARSLNIP 101
Query: 66 FSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESL 101
F G + + E + + + L++D+ +L
Sbjct: 102 FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 44.8 bits (105), Expect = 1e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEF--IEINSHSLFSKYFSESGKLVQKM 76
L G GTGKT + K + ++ + + + +N + + L K+
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107
Query: 77 FNK 79
Sbjct: 108 TGF 110
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 44.2 bits (105), Expect = 2e-05
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG-KLVQKMF 77
VLL GPPGTGKT L KAVA + + F + S F + F G V+ +F
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHV---------PFFSM-GGSSFIEMFVGLGASRVRDLF 96
Query: 78 NKIKEAVEYEESLVCLL-IDEIESLTRAR 105
K+ ++ IDEI+++ ++R
Sbjct: 97 ETAKKQAP------SIIFIDEIDAIGKSR 119
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 43.4 bits (103), Expect = 3e-05
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG-KLVQKMF 77
LL GPPG GKT L KAVA + + F+ + + + F + G V+ +F
Sbjct: 42 ALLLGPPGCGKTLLAKAVATEAQV---------PFLAM-AGAEFVEVIGGLGAARVRSLF 91
Query: 78 NKIKEAVEYEESLVCLL-IDEIESLTRARESVMSG 111
+ + C++ IDEI+++ + R + MSG
Sbjct: 92 KEARARAP------CIVYIDEIDAVGKKRSTTMSG 120
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 43.3 bits (103), Expect = 4e-05
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
+LL GPPGTGKT L +AVA
Sbjct: 52 ILLVGPPGTGKTLLARAVA 70
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 43.4 bits (103), Expect = 4e-05
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLL GPPG GKT L +AVA
Sbjct: 67 VLLVGPPGVGKTHLARAVA 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 42.6 bits (99), Expect = 6e-05
Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 15/123 (12%)
Query: 1 MKFSHSKVKSNIISWNRVVLL--HGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS 58
+ +++ S + ++ G G GKT+L K +++S + + +N+
Sbjct: 35 ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94
Query: 59 HSLFSKY-------------FSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRAR 105
+ + Y G + + + + E + +++DE +S+ +
Sbjct: 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP 154
Query: 106 ESV 108
Sbjct: 155 RIA 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 41.6 bits (97), Expect = 7e-05
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++LL G PG+GK+++ +A+A +
Sbjct: 10 NILLLSGHPGSGKSTIAEALANLPGVP 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 41.8 bits (99), Expect = 7e-05
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN 57
L GPPGTGKT+ A+A+ L ++ FIE+N
Sbjct: 42 LFSGPPGTGKTATAIALARDL---FGENWR-DNFIEMN 75
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 41.5 bits (97), Expect = 7e-05
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
++++ G P TGKT+L +A+A L + L
Sbjct: 6 ALIIVTGHPATGKTTLSQALATGLRLPL 33
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 41.2 bits (97), Expect = 2e-04
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN 57
L GPPGTGKT+ A+A+ L ++ FIE+N
Sbjct: 42 LFSGPPGTGKTATAIALARDL---FGENWR-DNFIEMN 75
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 40.4 bits (94), Expect = 2e-04
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLV---QK 75
+LL G PG GKT+L K +A K ++ + + + L+ Y E + +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYIN---VGDLAR--EEQLYDGYDEEYDCPILDEDR 68
Query: 76 MFNKIKEAVEYEESLV 91
+ +++ + +V
Sbjct: 69 VVDELDNQMREGGVIV 84
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 40.8 bits (96), Expect = 2e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN 57
L GPPG GKT+ A+A++L ++ F+E+N
Sbjct: 50 LFAGPPGVGKTTAALALAREL---FGENWR-HNFLELN 83
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 40.3 bits (94), Expect = 2e-04
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42
++ ++ GP G GK++ CK +A +L
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDN 28
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 41.0 bits (95), Expect = 2e-04
Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFS-------------KY 65
LL+G GTGKT++ + V ++L R S + + I +N+ +
Sbjct: 47 ALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR 106
Query: 66 FSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARES 107
+G V +++ ++ + + + +++DEI+ L +
Sbjct: 107 VPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGG 148
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 39.6 bits (92), Expect = 3e-04
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 34/150 (22%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR------------------------LQSKYKITEFI 54
+++ G PG GKT+L K + ++L R + K KI
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 55 EINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVC--LLIDEI---ESLTRARESVM 109
S L Y + ++ A + ++IDEI E ++ ++
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122
Query: 110 SGTEPSDGVRVVNAVLTQ-----IDQLKKK 134
V VV + + + ++++
Sbjct: 123 RQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 39.0 bits (90), Expect = 6e-04
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41
R+++L+G GK+ + + + L
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 39.5 bits (91), Expect = 6e-04
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 14/102 (13%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK-YKITEFIEINSHSLFSKYFS------- 67
N++ + + K L V +L K I ++I I++ L
Sbjct: 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFA 104
Query: 68 ------ESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTR 103
++ + I + ++ +LI E+L
Sbjct: 105 ISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 39.5 bits (93), Expect = 6e-04
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 25/93 (26%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE--FIEINSHSLFSKYFSESGKLVQKM 76
+LL GPPG GKT+L +A +L + L ++T IE + G L +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNL----RVTSGPAIE------------KPGDLAAIL 84
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVM 109
N + EE + L IDEI L+R E +
Sbjct: 85 ANSL------EEGDI-LFIDEIHRLSRQAEEHL 110
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 38.2 bits (88), Expect = 0.001
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEI-NSHSLFSKYFSESGKLVQKMF 77
+L+ G PGTGKTS+ + +A +L ++ E ++ + +++Y +E +
Sbjct: 13 ILITGTPGTGKTSMAEMIAAEL-----DGFQHLEVGKLVKENHFYTEYDTELDTHI---- 63
Query: 78 NKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSD 116
EE L+D +E + +R + + S+
Sbjct: 64 --------IEEKDEDRLLDFMEPIMVSRGNHVVDYHSSE 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.001
Identities = 54/341 (15%), Positives = 100/341 (29%), Gaps = 140/341 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF------SKYFSESG 70
R++ ++L +AV + + +L ++F YF E
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEG-NAQL--------------VAIFGGQGNTDDYFEE-- 172
Query: 71 KLVQKMFNKIKEAVEYEESLVCLLIDEI----ESLTRARES----------VMS-----G 111
L + ++ Y LV LI L R ++
Sbjct: 173 -L-RDLYQ------TYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 112 TEPSDGVRVVNAV------LTQI--------------DQLKKKSTGLSGRTLRKIPFLTF 151
P + + + Q+ +L+ G +G + + +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS-QGLVTAVA 282
Query: 152 VKYISNNSVSMENFLIALEKTVLDLL----VE------EKSLPLK------RNTE-VP-- 192
I+ + S E+F +++ K + +L V SLP N E VP
Sbjct: 283 ---IAE-TDSWESFFVSVRK-AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 193 -------------------NTYLHSNQRIHIYLMFCG------TSYP---------LQHS 218
N++L + +++ I L G + P L+ +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 219 KHFTELVQSHPGRCKVTSDDSTLNFSFSSLAVQ---HCIPL 256
K + L QS ++ + L FS L V H L
Sbjct: 397 KAPSGLDQS-----RIPFSERKLKFSNRFLPVASPFHS-HL 431
Score = 36.2 bits (83), Expect = 0.009
Identities = 35/173 (20%), Positives = 52/173 (30%), Gaps = 83/173 (47%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL----------QSKYKITE--------FIEIN 57
N VV GPP SL L++ L QS+ +E F+ +
Sbjct: 376 NLVV--SGPP----QSLYG-----LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 58 S--HSLFSKYFSESGKLVQK-------MFNK--IKEAV----------EYEESLVCLLID 96
S HS + L+ K FN I+ V S+ ++D
Sbjct: 425 SPFHS---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 97 EI-------ESLTRARES-------------------VMSGTEPSDGVRVVNA 123
I E+ T+ + + GT GVRV+ A
Sbjct: 482 CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT----GVRVIVA 530
Score = 31.6 bits (71), Expect = 0.34
Identities = 37/199 (18%), Positives = 63/199 (31%), Gaps = 49/199 (24%)
Query: 51 TEFIEINS-HSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVM 109
++E N H+L +K E+ + K IK Y + + + S +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---YITARIMAK----RPFDKKSNSAL 145
Query: 110 SGTEPSDGVRVVNAVLT-QIDQLKKKSTGLSGRT---LRKIPFLTFVKYISNNSVSMENF 165
++V A+ Q G + LR + + T+ + +
Sbjct: 146 FRAVGEGNAQLV-AIFGGQ---------GNTDDYFEELRDL-YQTYHVLVGDLIKFSAET 194
Query: 166 LIALEKTVLDLLVEEKSLP--------LKRNTEVPNTYLHSNQRIHIYLMFCGTSYPL-- 215
L L +T LD EK L+ + P+ YL+ S PL
Sbjct: 195 LSELIRTTLD---AEKVFTQGLNILEWLENPSNTPDKD---------YLLSIPISCPLIG 242
Query: 216 --Q--HSKHFTELVQSHPG 230
Q H +L+ PG
Sbjct: 243 VIQLAHYVVTAKLLGFTPG 261
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 38.7 bits (91), Expect = 0.001
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG-KLVQKMF 77
++L GPPGTGKT+L + +A+ + + I++ + SG K +++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYAN---------ADVERISAVT--------SGVKEIREAI 95
Query: 78 NKIKEAVEYEESLVCLLIDEI 98
+ ++ + L +DE+
Sbjct: 96 ERARQNRNAGRRTI-LFVDEV 115
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 38.3 bits (90), Expect = 0.002
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQS 46
VLL GPPG GKT+L +A +L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHV 81
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 37.5 bits (88), Expect = 0.003
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQS 46
+L GP G GKT+L ++ ++S +++
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANIKT 85
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 36.5 bits (84), Expect = 0.004
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
++ ++GP G GKT + ++L
Sbjct: 6 PIIWINGPFGVGKTHTAHTLHERLP 30
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman
fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 36.6 bits (85), Expect = 0.006
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEF 53
V L GPPG K+ + + + +Y +T F
Sbjct: 44 VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF 78
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 36.4 bits (84), Expect = 0.007
Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 35/144 (24%)
Query: 6 SKVKSNIISWNRVVLLHGPPGTGKTS-------------------------LCKAVAQKL 40
+V +I R+ ++ PG GKT + + + L
Sbjct: 9 YEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEAL 68
Query: 41 --------SIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEES--L 90
+ ++S + E +++ H+ F+ S ++ + EA +
Sbjct: 69 RGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVA 128
Query: 91 VCLLIDEIESLTRARESVMSGTEP 114
I + A M+ T P
Sbjct: 129 ARGYISTRVEMGEAAAIFMTATPP 152
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 34.9 bits (81), Expect = 0.008
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+V L+G G GKT+L + + Q + +
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGIGHQ 60
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 35.5 bits (82), Expect = 0.008
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
+++L G PG+GK++ + K F IN + + +
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKN----------PGFYNINRDDYRQSIMA-HEERDEYK 51
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARES 107
+ K KE + + D +S+ +S
Sbjct: 52 YTKKKEGIVTG-----MQFDTAKSILYGGDS 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 35.9 bits (84), Expect = 0.009
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVA 37
+K I+ L GPPG GKTSL K++A
Sbjct: 105 SLKGPIL------CLAGPPGVGKTSLAKSIA 129
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 35.6 bits (82), Expect = 0.009
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+ L+G G GK+ L A+A +LS + + F + + + S V++ +
Sbjct: 155 LYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-VKNAISNGS---VKEEID 210
Query: 79 KIKEAVEYEESLVCLLIDEI 98
+K + L++D+I
Sbjct: 211 AVKNV-----PV--LILDDI 223
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 35.1 bits (80), Expect = 0.010
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
++ ++ G PG GK+++ V + L + IN + G +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEIL------DNQGINNKIINYGDFMLATALKLG-YAKDR 54
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRAR 105
K +VE ++ L I RA
Sbjct: 55 DEMRKLSVEKQKKLQIDAAKGIAEEARAG 83
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 35.1 bits (80), Expect = 0.011
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R V L GPPG GKT+L ++ L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 35.0 bits (80), Expect = 0.016
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R L GP +GKT+L A+ + K F + LV +
Sbjct: 170 RYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLV--V 221
Query: 77 FNKIKEAVEYEESLVC-LLIDEIESL 101
F +K L I+ +++L
Sbjct: 222 FEDVKGTGGESRDLPSGQGINNLDNL 247
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 34.7 bits (80), Expect = 0.016
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+ LHG G GKT L A+A +L
Sbjct: 57 LYLHGSFGVGKTYLLAAIANEL 78
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 35.1 bits (80), Expect = 0.016
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 24/124 (19%)
Query: 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQ----------------KLSIRLQSKYKITEFI 54
+ + LL G GK+SL +A R + ++ I
Sbjct: 26 ESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTI 85
Query: 55 E--INSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESL------VCLLIDEIESLTRARE 106
S F + ++ ++E L + DE + L
Sbjct: 86 SPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS 145
Query: 107 SVMS 110
Sbjct: 146 RGGK 149
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 35.1 bits (80), Expect = 0.017
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
+++L G PG+GK++ + K F IN + + +
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKN----------PGFYNINRDDYRQSIMA-HEERDEYK 51
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARES 107
+ K KE + + D +S+ +S
Sbjct: 52 YTKKKEGIVTG-----MQFDTAKSILYGGDS 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 34.9 bits (80), Expect = 0.017
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
+ GPP TGK+ LC ++ L + F N S F
Sbjct: 127 NCLAFIGPPNTGKSMLCNSLIHFL------GGSVLSF--ANHKSHF 164
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 34.3 bits (80), Expect = 0.021
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP +GK+S+ + VA L +
Sbjct: 9 GPSASGKSSVARRVAAALGVPY 30
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 33.9 bits (77), Expect = 0.025
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
R V++ G G+GKT++ VA + +
Sbjct: 30 RHVVVMGVSGSGKTTIAHGVADETGLEF 57
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 34.7 bits (80), Expect = 0.026
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQ 38
+R+V+L G PGTGK++ KAVA
Sbjct: 204 HRLVVLTGGPGTGKSTTTKAVAD 226
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 34.3 bits (79), Expect = 0.027
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 20 LLHGPPGTGKTSLCKAVAQKL 40
L+ PG G +L A+++ L
Sbjct: 28 LIQALPGMGDDALIYALSRYL 48
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 34.2 bits (79), Expect = 0.027
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
+ L G PGTGKT
Sbjct: 23 GFFIALTGEPGTGKTIFS 40
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 33.9 bits (77), Expect = 0.028
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
N+VV++ G PG G T+ + L
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 33.5 bits (77), Expect = 0.029
Identities = 14/96 (14%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+ G PG GKT L A + + + + ++ L + ++ + +
Sbjct: 41 LTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-----FDTKDLIFR--------LKHLMD 87
Query: 79 KIKEAVEYEESLV---CLLIDEI--ESLTRARESVM 109
+ K+ ++ ++++ L++D++ E L+ + ++
Sbjct: 88 EGKDT-KFLKTVLNSPVLVLDDLGSERLSDWQRELI 122
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 34.0 bits (79), Expect = 0.032
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP GTGK+S+ + +A+ L R
Sbjct: 16 GPAGTGKSSVSRGLARALGARY 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 34.3 bits (79), Expect = 0.033
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN 57
+L +GPPGTGKTS A+A+++ Y +E+N
Sbjct: 49 LLFYGPPGTGKTSTIVALAREI---YGKNYS-NMVLELN 83
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 34.0 bits (78), Expect = 0.033
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VL+ G GTGK++ +A+A
Sbjct: 48 VLVFGDRGTGKSTAVRALA 66
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 33.9 bits (78), Expect = 0.034
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
VVLL G PGTGKT
Sbjct: 23 RNVVLLSGGPGTGKTIFS 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 34.4 bits (79), Expect = 0.037
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
V ++G G GK+ L + S+
Sbjct: 148 GWVTIYGMAGCGKSVLAAEAVRDHSL 173
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 33.7 bits (77), Expect = 0.043
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+++L G PG GK++ K +A+ LS
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKN 31
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 33.7 bits (77), Expect = 0.043
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 28/123 (22%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS----------------------IRLQSK-YKITE- 52
V + G G GKT++ A A ++ + KITE
Sbjct: 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKITEN 74
Query: 53 --FIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL--IDEIESLTRARESV 108
+EI+ +Y ++ + + ++ + + + IDE + + +
Sbjct: 75 LYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYM 134
Query: 109 MSG 111
+
Sbjct: 135 TTD 137
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 33.6 bits (78), Expect = 0.045
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP +GK+++ K +A+
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTY 44
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 33.9 bits (77), Expect = 0.048
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
V I V ++GP GTG T+L K + + L
Sbjct: 36 IVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL 69
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 33.7 bits (77), Expect = 0.059
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 27/97 (27%)
Query: 16 NRVVLLHGPPGTGKTSLC---------------------------KAVAQKLSIRLQSKY 48
R L+ G GTGKT A+ L
Sbjct: 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 98
Query: 49 KITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVE 85
+ +++ G + + +I A++
Sbjct: 99 DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQ 135
Score = 31.8 bits (72), Expect = 0.19
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++L G GTGKT L +
Sbjct: 282 SIILATGATGTGKTLLVSRFVENACAN 308
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 32.8 bits (76), Expect = 0.061
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP G GK +LCKA+A+ L L
Sbjct: 12 GPSGAGKGTLCKAMAEALQWHL 33
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 33.0 bits (75), Expect = 0.067
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
+ L GP TGKT++ +A+A +
Sbjct: 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 32.8 bits (76), Expect = 0.067
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP GK+++ K VA +LS+
Sbjct: 10 GPAAAGKSTIAKRVASELSMIY 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 32.9 bits (75), Expect = 0.074
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+LL+GP GTGK + C A+ + +
Sbjct: 39 LLLYGPNGTGKKTRCMALLESI 60
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 32.7 bits (74), Expect = 0.078
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN--SHSLFSKYFSESGKLV 73
++ + G+G + K +A+ +I L SK + E + S + ++ +
Sbjct: 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFA 65
Query: 74 QKMFNKIKEAVEYEESLVCLLIDEIESLTRARES 107
+ E+ + + I +
Sbjct: 66 FIPVPAGGTTISLEQDIAIRQFNFIRKKANEEKE 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 32.6 bits (74), Expect = 0.081
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
VLL G GTGKT+
Sbjct: 30 GTTVLLTGGTGTGKTTFA 47
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 32.8 bits (75), Expect = 0.082
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN 57
+++ G PG GKT+ +A +L L Y +E+N
Sbjct: 45 MIISGMPGIGKTTSVHCLAHEL---LGRSYA-DGVLELN 79
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 33.3 bits (76), Expect = 0.089
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41
+S +R ++L GPPG+GKT + +
Sbjct: 1300 WLSEHRPLILCGPPGSGKTMTLTSTLRAFP 1329
Score = 29.1 bits (65), Expect = 2.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 12 IISWNRVV-------LLHGPPGTGKTSLCKAVA-----QKLSIRLQSKYKITEFIE 55
I+ +RV LL G G GK+ L + VA +I++ + YK ++F +
Sbjct: 1635 ILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYKSSDFDD 1690
Score = 27.6 bits (61), Expect = 5.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 23 GPPGTGKTSLCKAVAQKLSI 42
GP GTGKT KA+ +L
Sbjct: 611 GPAGTGKTETVKALGSQLGR 630
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 32.8 bits (75), Expect = 0.097
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
R VLL G PGTGK+ L +A+A+ L
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELL 84
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.0 bits (73), Expect = 0.097
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+++L GP K+++ ++++L
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELKYP 28
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 33.0 bits (76), Expect = 0.098
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 22/86 (25%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSK-------Y--FSESGKLV 73
GP G GKT + +++ L I L ++ ++E++E H++ S+ Y F + G L
Sbjct: 495 GPTGVGKTEVTVQLSKALGIELL-RFDMSEYME--RHTV-SRLIGAPPGYVGFDQGGLLT 550
Query: 74 QKMFNKIKEAVEYEESLVCLLIDEIE 99
+AV V LL+DEIE
Sbjct: 551 --------DAVIKHPHAV-LLLDEIE 567
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 32.5 bits (74), Expect = 0.10
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEF 53
+L +GPPGTGKTS A+ ++L K +I E
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 95
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 32.5 bits (75), Expect = 0.12
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
GP G GKT L K +A L
Sbjct: 54 GPTGVGKTELAKTLAATL 71
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 32.3 bits (73), Expect = 0.12
Identities = 9/46 (19%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQS 46
++ ++++ N + V+L G PG+GK+++ + + Q ++ + +
Sbjct: 12 LQLLDNRIEDN---YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54
Score = 29.7 bits (66), Expect = 1.0
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 10 SNIISWNR-VVLLHGPPGTGKTSLCKAVAQKLSIR 43
S + S N + GT AV +++
Sbjct: 112 SALTSNNEECTAVVARGGTANAIRIAAVDNPVNVN 146
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.0 bits (72), Expect = 0.13
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+++ G G+GK+S+ +A+A+
Sbjct: 19 GSIVVMGVSGSGKSSVGEAIAEAC 42
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 32.4 bits (73), Expect = 0.13
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQ 74
+ L+ G TGK+S+ K +L++ +I ++ + + +
Sbjct: 29 RAPITLVLGLRRTGKSSIIKIGINELNLP---------YIYLDLRKFEERNYISYKDFLL 79
Query: 75 KMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKK 134
++ +I + V+ SL+ L + + E + +L +Q K
Sbjct: 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNE--IKFNWNRKDRLSFANLLESFEQASKD 137
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 32.6 bits (74), Expect = 0.14
Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 35/149 (23%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTS-------------------------LCKA 35
+ +V +I R+ ++ PG GKT +
Sbjct: 171 IGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAE 230
Query: 36 VAQKL--------SIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYE 87
+ + L + ++S + E +++ H+ F+ S ++ + EA +
Sbjct: 231 MEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTD 290
Query: 88 ESLVCL--LIDEIESLTRARESVMSGTEP 114
V I + A M+ T P
Sbjct: 291 PCSVAARGYISTRVEMGEAAAIFMTATPP 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.5 bits (71), Expect = 0.15
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42
+ + +L G G+GK+++ VA +L
Sbjct: 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 31.4 bits (72), Expect = 0.17
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+L G PG+GK+++ + +A+ L +
Sbjct: 2 APKAVLVGLPGSGKSTIGRRLAKALGVG 29
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.1 bits (74), Expect = 0.18
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
GP G GKT L K +A L
Sbjct: 595 GPTGVGKTELAKTLAATL 612
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.6 bits (72), Expect = 0.19
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
++V L G PG+GK++L +A LS
Sbjct: 23 QLVALSGAPGSGKSTLSNPLAAALS 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 31.7 bits (73), Expect = 0.19
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI---RLQ 45
+LL G PG KT +A+ + + R+Q
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 31.0 bits (71), Expect = 0.23
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 23 GPPGTGKTSL----CKAVAQKLSI 42
G G+GKT L + + ++ I
Sbjct: 37 GAIGSGKTLLIERTIERIGNEVKI 60
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 31.2 bits (70), Expect = 0.25
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 18 VVLLHGPPGTGKT----SLCKAVA 37
V L P G GK+ L +A
Sbjct: 32 VGALVSPGGAGKSMLALQLAAQIA 55
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 31.7 bits (72), Expect = 0.25
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 11 NIISWNRVVLLHGPPGTGKT 30
N++ ++ +L PG+GKT
Sbjct: 16 NMLRKRQMTVLDLHPGSGKT 35
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 30.6 bits (70), Expect = 0.26
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ ++ G G G T++ + +A+ L
Sbjct: 3 EPIFMV-GARGCGMTTVGRELARALGYE 29
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 30.9 bits (70), Expect = 0.26
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
++ GP TGK+ + + + + F +NS S F
Sbjct: 61 LVFCGPANTGKSYFGMSFIHFI------QGAVISF--VNSTSHF 96
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 31.2 bits (70), Expect = 0.27
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
+VLL G GK+S+CK V + + T + S
Sbjct: 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTL 45
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 31.1 bits (71), Expect = 0.27
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 23 GPPGTGKTSL----CKAVAQKLSI 42
G G+GKT L + K I
Sbjct: 45 GAIGSGKTLLIEKLIDNLKDKYKI 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 31.3 bits (71), Expect = 0.27
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 10 SNIISWNRVVLLHGPPGTGKT 30
S+++ +L PG GKT
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKT 22
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 30.6 bits (70), Expect = 0.28
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
K +NI L G G GKTS+ +A+
Sbjct: 3 KNLTNIY-------LIGLMGAGKTSVGSQLAKLTKRI 32
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 30.6 bits (70), Expect = 0.29
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ NI+ G G+GK++L +A+A+ L +
Sbjct: 2 SLAKNIV-------FIGFMGSGKSTLARALAKDLDLV 31
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 30.6 bits (69), Expect = 0.30
Identities = 13/101 (12%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFI--EINSHSLFSKYFSESGKLVQ 74
+V+L+ G PG+GK+ K + ++ ++ +++ + + + + + K ++
Sbjct: 2 KVILITGMPGSGKSEFAK-LLKERGAKV---IVMSDVVRKRYSIEAKPGERLMDFAKRLR 57
Query: 75 KMF------NKIKEAVEYEESLVCLL-----IDEIESLTRA 104
+++ E + + + + E+E R
Sbjct: 58 EIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRL 98
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 30.8 bits (69), Expect = 0.31
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIE 55
N ++ + G+G + K +A++L I + E
Sbjct: 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASE 53
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.1 bits (70), Expect = 0.32
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS 58
+++L+ G G+GK+S+ + S + T +E +
Sbjct: 5 KLLLM-GRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH 45
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 30.2 bits (69), Expect = 0.37
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
K NI L GP G GK+++ + +AQ+L++
Sbjct: 2 AEKRNIF-------LVGPMGAGKSTIGRQLAQQLNME 31
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 31.0 bits (71), Expect = 0.39
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
KSNI LL GP G+GKT L + +A+ L
Sbjct: 51 KSNI-------LLIGPTGSGKTLLAETLARLL 75
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 30.7 bits (70), Expect = 0.39
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 7/32 (21%)
Query: 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
KSNI LL GP G+GKT + + +A+ L
Sbjct: 72 KSNI-------LLIGPTGSGKTLMAQTLAKHL 96
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.8 bits (69), Expect = 0.40
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
+V+ G G+GKT+L + L
Sbjct: 16 IVVFVGTAGSGKTTLTGEFGRYL 38
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 30.2 bits (69), Expect = 0.43
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 18 VVLLHGPPGTGKTSLC 33
+ ++GP +GKT+L
Sbjct: 22 LTQVYGPYASGKTTLA 37
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 31.1 bits (70), Expect = 0.45
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK 47
+ L+ GPPGTGKT + L+ +
Sbjct: 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGP 402
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 30.7 bits (70), Expect = 0.45
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+L+ GP G GKT + + +A+ + + T+F E+ E +++ + +
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKV-EATKFTEV------GYVGKEVDSIIRDLTD 105
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPS-DGV 118
A++ E + IDEI+ + ++ SG + S +GV
Sbjct: 106 SAGGAIDAVEQNGIVFIDEIDKI--CKKGEYSGADVSREGV 144
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 30.2 bits (68), Expect = 0.49
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ L++GP +GKT + +AQ+
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQET 25
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 30.6 bits (69), Expect = 0.56
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK 47
+ L+ GPPGTGKT + L+ +
Sbjct: 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGP 226
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 30.3 bits (68), Expect = 0.58
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 26/121 (21%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS---------------------IRLQSK-YKITE-- 52
++ G G +T + A A+ L+ L +I
Sbjct: 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVLPLLLEQTLTPDPQQIAPNL 62
Query: 53 -FIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCLL-IDEIESLTRARESVMS 110
++ S L + + E KL + Y + LV L +D +L RE S
Sbjct: 63 EVVQFQSSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDAS 122
Query: 111 G 111
G
Sbjct: 123 G 123
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 29.4 bits (67), Expect = 0.62
Identities = 7/27 (25%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R+ L+ G +GK+++ +++ L+I
Sbjct: 2 RIYLI-GFMCSGKSTVGSLLSRSLNIP 27
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 29.9 bits (68), Expect = 0.64
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 21/81 (25%)
Query: 21 LHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKI 80
L GP +G+T L A N S Y +
Sbjct: 57 LWGPVKSGRTHLIHAACA----------------RANELERRSFYIPLG-----IHASIS 95
Query: 81 KEAVEYEESLVCLLIDEIESL 101
+E E + ID+++++
Sbjct: 96 TALLEGLEQFDLICIDDVDAV 116
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 29.9 bits (67), Expect = 0.69
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++++L G GTGK+ L +A
Sbjct: 41 KLLVLMGATGTGKSRLSIDLAAHF 64
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 29.1 bits (66), Expect = 0.81
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
+VL+ G G+GK+SL + + L
Sbjct: 8 QHLVLI-GFMGSGKSSLAQELGLAL 31
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.8 bits (68), Expect = 0.82
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ + L GP +GKT+L + + L
Sbjct: 11 KAIFLMGPTASGKTALAIELRKIL 34
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 29.9 bits (68), Expect = 0.83
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
GP G GKT L +A+A+ +
Sbjct: 528 GPTGVGKTELARALAESI 545
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 29.2 bits (66), Expect = 0.88
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLS 41
V+ + G +GKT+L ++Q L
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLR 47
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.8 bits (68), Expect = 0.90
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ L GP GKT L A+A L
Sbjct: 6 PAIFLMGPTAAGKTDLAMALADAL 29
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.4 bits (67), Expect = 0.92
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+++L GP G GK ++ K + + S +
Sbjct: 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 29.2 bits (65), Expect = 0.96
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINS 58
R++L+ G +GK+S+ K V K+S + T I +
Sbjct: 22 RILLM-GLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDD 62
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 29.4 bits (67), Expect = 0.96
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQK-----LSI 42
SN ++ + ++ P G GKTSL +A+ + +SI
Sbjct: 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISI 38
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 29.9 bits (67), Expect = 1.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK 47
+ L+ GPPGTGKT + LS + +
Sbjct: 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDR 406
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase;
HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 29.5 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
++ I+ R VL+ G PGTGKT++ +AQ L
Sbjct: 63 IREGKIA-GRAVLIAGQPGTGKTAIAMGMAQAL 94
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 29.4 bits (66), Expect = 1.1
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 35/134 (26%)
Query: 16 NRVVLLHGPPGTGKT-------------------------SLCKAVAQKL--------SI 42
+ +L PG GKT + + + L +
Sbjct: 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRGEPIRYMTP 61
Query: 43 RLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKEAVEYEESLVCL--LIDEIES 100
+QS+ E ++ HS F+ + ++ + EA + + V I+ S
Sbjct: 62 AVQSERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS 121
Query: 101 LTRARESVMSGTEP 114
+ A M+ T P
Sbjct: 122 MGDAGAIFMTATPP 135
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 28.7 bits (65), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R+ L G G GKT+L KA A+KL++
Sbjct: 27 RIFLT-GYMGAGKTTLGKAFARKLNVP 52
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.4 bits (65), Expect = 1.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+VVL+ G PG GKT +
Sbjct: 162 KVVLVDGVPGCGKTKEILSRVNF 184
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.4 bits (67), Expect = 1.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++V + GP GKT +A++L
Sbjct: 4 KLVAIVGPTAVGKTKTSVMLAKRL 27
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 29.0 bits (65), Expect = 1.2
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ L+ G G+GKT++ K +A+ L
Sbjct: 51 MYLV-GMMGSGKTTVGKIMARSLGYT 75
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 29.1 bits (66), Expect = 1.3
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+V++ G P +GK + C+ + K +
Sbjct: 7 KVMIS-GAPASGKGTQCELIKTKYQL 31
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.7 bits (65), Expect = 1.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
V+ + G +GKT+L +A+A+ L R
Sbjct: 7 FVIGIAGGTASGKTTLAQALARTLGER 33
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 29.1 bits (66), Expect = 1.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++++ GP +GKT L VA+K
Sbjct: 8 FLIVIVGPTASGKTELSIEVAKKF 31
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 28.6 bits (65), Expect = 1.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+R +++ GP GTGK++L K + +
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 28.7 bits (65), Expect = 1.5
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQK 39
M + ++ + ++ P G GK+SL +A+ +
Sbjct: 1 MGSDKIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKT 39
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.0 bits (65), Expect = 1.8
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 19 VLLHGPPGTGKTSLCKAVA-----QKLSIRLQSKYKITEFIE 55
++L G TGKT L + VA + + ++ +++F
Sbjct: 1612 MMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDM 1653
Score = 28.7 bits (64), Expect = 2.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41
+++ R ++L GPPG+GKT + + S
Sbjct: 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNSS 1292
Score = 27.5 bits (61), Expect = 5.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 23 GPPGTGKTSLCKAVAQKLSI 42
GP GTGKT KA Q L
Sbjct: 652 GPAGTGKTETVKAFGQNLGR 671
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 28.2 bits (64), Expect = 1.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+++L GP G GK ++ +AV +
Sbjct: 9 LLIVLSGPSGVGKGTVREAVFKDPETSFD 37
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 28.0 bits (63), Expect = 1.8
Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 26/90 (28%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
+ + + G G GK+ L +A + + Y +
Sbjct: 37 QFIYVWGEEGAGKSHLLQAWVA----------------QALEAGKNAAYIDAAS------ 74
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARE 106
+ L +D++E L +
Sbjct: 75 ----MPLTDAAFEAEYLAVDQVEKLGNEEQ 100
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 28.7 bits (64), Expect = 1.9
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN-SHSLFSKYFSESGKLVQK 75
+ G G GKTS+ A A +L+ + + + + + ++ + FS Q
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLA---EQGKR-VLLVSTDPASNV-GQVFS------QT 57
Query: 76 MFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQID 129
+ N I+ + L L ID + + R ++ + VV+++ Q+
Sbjct: 58 IGNTIQA-IASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLS 110
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 28.3 bits (64), Expect = 2.0
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 17 RVVLLHGPPGTGKTSLCKA 35
+ ++L G G G++ + A
Sbjct: 20 KTLVLIGASGVGRSHIKNA 38
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 28.3 bits (64), Expect = 2.0
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R++LL G PG GK + + +K I
Sbjct: 10 RLILL-GAPGAGKGTQANFIKEKFGI 34
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.8 bits (65), Expect = 2.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
I+ VV + GP GTGKT+ K +A +L
Sbjct: 111 LPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.1 bits (62), Expect = 2.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
V + G +GKT+L +
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.3 bits (62), Expect = 2.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+LL G G GKT++ + ++
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEF 56
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 28.4 bits (63), Expect = 2.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
+ ++ G G GKT++ A L+
Sbjct: 27 KYIMFGGKGGVGKTTMSAATGVYLA 51
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 27.8 bits (63), Expect = 2.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+ ++L G G G+ + + K
Sbjct: 6 KTLVLLGAHGVGRRHIKNTLITK 28
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 28.3 bits (64), Expect = 2.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQ 45
P G GKT++ + +K +
Sbjct: 34 SPSGCGKTTVANKLLEKQKNNIV 56
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 28.4 bits (64), Expect = 2.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+V+++ G G GK+ L +AQK
Sbjct: 3 KVIVIAGTTGVGKSQLSIQLAQKF 26
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.9 bits (63), Expect = 2.4
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK-----LSI 42
RVV+L GP GK+++ + + ++ S+
Sbjct: 21 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 51
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 28.3 bits (64), Expect = 2.5
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVV--NAVLTQIDQLKKKST 136
IK+ ++ ++ IE + + V+ + + V VV A LT + +
Sbjct: 191 TIKKDFSRHREIMRVVRPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL 250
Query: 137 GL 138
G
Sbjct: 251 GK 252
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 28.5 bits (64), Expect = 2.6
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH-------SLFS 63
N ++ + G G GKT++ K +A ++ E+ + F
Sbjct: 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79
Query: 64 KYFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESV 108
+ +S K+V K+ ++ A ++ + V ++ +I+ + E
Sbjct: 80 ELYSNELKIVHKIQY-VEYASKFLKGTVNEILTKIDERGKKDEVK 123
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 28.0 bits (63), Expect = 2.8
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
+ R + L G PG+GK + + +
Sbjct: 19 KRRYACLSKPDGRYIFL-GAPGSGKGTQSLNLKKSHCY 55
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5;
1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB:
1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 27.9 bits (63), Expect = 2.9
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R++LL G P GK + + + +K I
Sbjct: 2 RIILL-GAPVAGKGTQAQFIMEKYGI 26
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.0 bits (63), Expect = 2.9
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R V+L GPPG+GK ++C+ +AQ +
Sbjct: 29 RAVIL-GPPGSGKGTVCQRIAQNFGL 53
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.9 bits (63), Expect = 3.0
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R V++ G PG+GK ++ + +
Sbjct: 9 RAVIM-GAPGSGKGTVSSRITTHFEL 33
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.1 bits (63), Expect = 3.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 16 NRVVLLHGPPGTGKTS 31
R+ ++ G PGTGKT+
Sbjct: 164 RRISVISGGPGTGKTT 179
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 27.5 bits (62), Expect = 3.3
Identities = 7/26 (26%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
++L+ G PG+GK + C+ + ++ +
Sbjct: 7 NLILI-GAPGSGKGTQCEFIKKEYGL 31
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 27.5 bits (62), Expect = 3.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42
VV + G PG GK + C + +K
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 27.5 bits (62), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+V L GPPG GK + K +A++
Sbjct: 2 ILVFL-GPPGAGKGTQAKRLAKEKGF 26
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 27.7 bits (60), Expect = 3.5
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEF 53
+ GP G+GK+ + L + + I
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYA 68
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 27.5 bits (62), Expect = 3.5
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
FS +V V+ + G PG GK + C+ + + S
Sbjct: 10 FSPDQVS--------VIFVLGGPGAGKGTQCEKLVKDYSF 41
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 27.6 bits (61), Expect = 3.7
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN 57
G G GK+++ +++KL + E +E N
Sbjct: 7 GTVGAGKSTISAEISKKLGYEI-----FKEPVEEN 36
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 27.5 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R V+L GP G GK++L K + Q+
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQE 27
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN
PG4; 2.24A {Gluconacetobacter hansenii}
Length = 199
Score = 27.3 bits (61), Expect = 3.9
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 29 KTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESG--KLVQKMFNKIKEA 83
K S AVA+ L IT I + +S+ E G V M +I A
Sbjct: 18 KASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATA 74
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 27.5 bits (62), Expect = 4.0
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R+VL+ GPPG GK + + ++
Sbjct: 6 RMVLI-GPPGAGKGTQAPNLQERFHA 30
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A*
2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A*
1zip_A* 1s3g_A*
Length = 216
Score = 27.5 bits (62), Expect = 4.2
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+VL+ G PG GK + + + +K I
Sbjct: 2 NLVLM-GLPGAGKGTQGERIVEKYGI 26
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 27.5 bits (62), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R VLL GPPG GK + +A+ +
Sbjct: 18 RAVLL-GPPGAGKGTQAPKLAKNFCV 42
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.5 bits (60), Expect = 4.4
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE 52
+ L G G GKT+ + +I I E
Sbjct: 14 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE 48
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 27.7 bits (61), Expect = 4.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 16 NRVVLLHGPPGTGKTSLCKAV 36
+ + LHG G+GK+ +
Sbjct: 152 SFFLFLHGRAGSGKSVIASQA 172
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 27.3 bits (60), Expect = 4.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 18 VVLLHGPPGTGKTS 31
+ L+ G PG+GKT
Sbjct: 7 ICLITGTPGSGKTL 20
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 27.3 bits (59), Expect = 4.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
LL G PG+GKTSL A+ ++
Sbjct: 34 TAFLLGGQPGSGKTSLRSAIFEET 57
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 27.1 bits (61), Expect = 4.6
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+VL+ G PG GK + + + +K I
Sbjct: 2 NIVLM-GLPGAGKGTQAEQIIEKYEI 26
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 27.6 bits (62), Expect = 4.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
++ VV + GP GTGK++ K +A +L
Sbjct: 41 LPVVKEGMVVGIVGPNGTGKSTAVKILAGQL 71
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 27.2 bits (61), Expect = 4.6
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+++ GP G+GK + V K S+
Sbjct: 2 NILIF-GPNGSGKGTQGNLVKDKYSL 26
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 26.8 bits (60), Expect = 5.0
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 16 NRVVLLHGPPGTGK 29
V L G G+
Sbjct: 27 TSPVFLTGEAGSPF 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 27.3 bits (61), Expect = 5.6
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 10/40 (25%)
Query: 19 VLLHGP-PGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN 57
++LH P PGTGKT++ KA+ ++ + + +N
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVN---------ADMMFVN 80
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 27.2 bits (61), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 10 SNIISWNRVV---LLHGPPGTGKTSLCKAVAQKL 40
+N +S R+ L G G GKTS+ + +A+ L
Sbjct: 36 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 27.2 bits (60), Expect = 5.8
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
+ G TGKT L +
Sbjct: 123 AITEAFGEFRTGKTQLSHTLC 143
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 27.0 bits (60), Expect = 5.8
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++ + G +GK+++C+ + + L
Sbjct: 26 FLIGVSGGTASGKSTVCEKIMELL 49
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 26.7 bits (60), Expect = 6.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42
VV + G PG+GK + C + +
Sbjct: 8 VVFVLGGPGSGKGTQCANIVRDFGW 32
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 26.7 bits (60), Expect = 6.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+++ GP G GK +L K V + R +
Sbjct: 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFR 41
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 26.8 bits (60), Expect = 6.1
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+++ GP G GK +L K + +
Sbjct: 24 YPLVICGPSGVGKGTLIKKLLNEFPNYFY 52
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 27.2 bits (60), Expect = 6.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
R + + G G GKT+ ++A +L+
Sbjct: 17 RWIFVGGKGGVGKTTTSCSLAIQLA 41
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 27.0 bits (59), Expect = 6.5
Identities = 10/62 (16%), Positives = 23/62 (37%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF 66
K + VL+ G G+GKT+ + + + ++ +N +L +
Sbjct: 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMY 70
Query: 67 SE 68
+
Sbjct: 71 KD 72
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase;
HET: AMP; 2.3A {Homo sapiens}
Length = 199
Score = 26.7 bits (60), Expect = 6.7
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+++ + G PG+GK + C+ + +K
Sbjct: 13 KIIFIIGGPGSGKGTQCEKLVEKYGF 38
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 27.2 bits (59), Expect = 7.1
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 16 NRVVLLHGPPGTGKT 30
+++ GP +GKT
Sbjct: 155 RKIIFHSGPTNSGKT 169
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.8 bits (59), Expect = 7.2
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 19 VLLHGPPGTGKTSL 32
+L++G GTGK+ L
Sbjct: 56 LLVNGATGTGKSVL 69
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 26.3 bits (59), Expect = 7.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
++ + G PG+GK + C+ + QK
Sbjct: 10 NIIFVVGGPGSGKGTQCEKIVQKYGY 35
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 26.6 bits (58), Expect = 7.3
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
R + + G GK++ K + +
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics; 1.80A {Thermus thermophilus}
Length = 186
Score = 26.3 bits (59), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
V+ L GPPG GK + +AQ+L
Sbjct: 6 AVIFL-GPPGAGKGTQASRLAQELGF 30
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 26.4 bits (58), Expect = 7.9
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 4 SHSKVKSNIIS-WNR--VVLLHGPPGTGKTSLCKAVAQKL 40
H S ++ ++ ++ + G +GKT+L K + + L
Sbjct: 6 HHHHHSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 26.4 bits (59), Expect = 8.1
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 23 GPPGTGKTSLCKAVA 37
GP G+GKT L A+A
Sbjct: 29 GPAGSGKTYL--AMA 41
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.3 bits (58), Expect = 8.8
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
++ + G +GK+S+C + Q L
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLL 46
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 26.0 bits (56), Expect = 9.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++ GTGKT+L K + L R
Sbjct: 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 26.1 bits (58), Expect = 10.0
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFNKIKE 82
G +GKT+ C + + + + K F + + +GK++ + K
Sbjct: 11 GLDKSGKTTQCMNIMESIP---ANTIKYLNFPQ---------RSTVTGKMIDDYLTRKKT 58
Query: 83 AVEYEESL 90
++ +L
Sbjct: 59 YNDHIVNL 66
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 26.0 bits (58), Expect = 10.0
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
RV+LL GPPG GK + +A+KL I
Sbjct: 22 RVLLL-GPPGAGKGTQAVKLAEKLGI 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.371
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,591,878
Number of extensions: 198195
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 236
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)