RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3997
(256 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 87.2 bits (216), Expect = 3e-21
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
+ VL+ GPPGTGKT L KA+A + + F I+ +
Sbjct: 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---------PFFTISGSDFVEMFVGVGASR 92
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
V+ MF + K+A + + IDEI+++ R R + + G + + +N +L ++D +
Sbjct: 93 VRDMFEQAKKA-----APCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFE 146
Query: 133 KKS 135
Sbjct: 147 GNE 149
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 86.4 bits (214), Expect = 6e-21
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
+ VLL GPPG GKT L +AVA + + FI + +
Sbjct: 39 ARIPKGVLLVGPPGVGKTHLARAVAGEARV---------PFITASGSDFVEMFVGVGAAR 89
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
V+ +F K + + IDEI+++ R R S + G + + +N +L ++D +
Sbjct: 90 VRDLFETAKRH-----APCIVFIDEIDAVGRKRGSGVGG-GNDEREQTLNQLLVEMDGFE 143
Query: 133 KKS 135
K +
Sbjct: 144 KDT 146
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 73.1 bits (179), Expect = 9e-16
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMF 77
+V++ G +GKT L A+ + L + + + + S Y ++ V +
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDK-------YATVRFGEPLSGYNTDFNVFVDDIA 177
Query: 78 NKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
+ + ++ID ++++ A T R +L+ I +
Sbjct: 178 RAMLQH-------RVIVIDSLKNVIGAA---GGNTTSGGISRGAFDLLSDIGAMAASR 225
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 65.2 bits (158), Expect = 3e-13
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
++ ++ VL +GPPG GKT L KA+A + FI I L + +F ES
Sbjct: 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQAN---------FISIKGPELLTMWFGESEAN 88
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
V+++F+K + + + L DE++S+ +AR G RV+N +LT++D +
Sbjct: 89 VREIFDKAR-----QAAPCVLFFDELDSIAKAR-GGNIGDGGGAADRVINQILTEMDGMS 142
Query: 133 KKSTGL 138
K
Sbjct: 143 TKKNVF 148
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 55.8 bits (134), Expect = 1e-09
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 11/113 (9%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60
+ + K I R L GP +GKT+L A+ + + + +N
Sbjct: 139 VVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG---------KALNVNLPL 189
Query: 61 LFSKY-FSESGKLVQKMFNKIKE-AVEYEESLVCLLIDEIESLTRARESVMSG 111
+ + +F +K E + I+ +++L + +
Sbjct: 190 DRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKV 242
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 49.1 bits (116), Expect = 1e-07
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
+ +L+ GP G GKT + + +A KL+ K + T+F E+ ++ +
Sbjct: 50 KNILMIGPTGVGKTEIARRLA-KLANAPFIKVEATKFTEVGYVGKEVDSI------IRDL 102
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQID 129
+ A++ E + IDEI+ + + V +L ++
Sbjct: 103 TDSAGGAIDAVEQNGIVFIDEIDKICK---KGEYSGADVSREGVQRDLLPLVE 152
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 45.9 bits (107), Expect = 1e-06
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY---------- 65
N + G G GKT+L K +++S + + +N+ + + Y
Sbjct: 46 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT 105
Query: 66 ---FSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARES 107
G + + + + E + +++DE +S+ +
Sbjct: 106 GYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI 150
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 42.7 bits (99), Expect = 1e-05
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEF 53
R+++L+G GK+ + + + L + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 41.9 bits (97), Expect = 2e-05
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++LL G PG+GK+++ +A+A +
Sbjct: 5 NILLLSGHPGSGKSTIAEALANLPGVP 31
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 41.9 bits (97), Expect = 3e-05
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
LL G PG+GKTSL A+ ++ I I++ + ++ + +
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEET---------QGNVIVIDNDTFKQQHPNFDELVKLYE 83
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEP 114
+ +K Y + +I + +G
Sbjct: 84 KDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTT 121
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 40.8 bits (94), Expect = 4e-05
Identities = 14/122 (11%), Positives = 38/122 (31%), Gaps = 3/122 (2%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQK 75
+ + +L G G+GK+++ VA +L + + + +
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAF---LDGDFLHPRRNIEKMASGEPLNDDDRKP 62
Query: 76 MFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKS 135
+ +A + + + +L + ++ P+ + I+ K
Sbjct: 63 WLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKAR 122
Query: 136 TG 137
G
Sbjct: 123 KG 124
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 41.3 bits (95), Expect = 5e-05
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
L G PGTGKT + + + F+ IN +
Sbjct: 46 ATLLGRPGTGKTVTLRKLWELY-----KDKTTARFVYINGFIYRNFTAIIGEIARSLNIP 100
Query: 79 KIKEAVEYE 87
+ + +
Sbjct: 101 FPRRGLSRD 109
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 40.3 bits (93), Expect = 9e-05
Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 7/144 (4%)
Query: 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK---YKITEFIEINSHSLFSK 64
K++ + VLL GPP +GKT+L +A++ + K+ F E K
Sbjct: 32 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKK 91
Query: 65 YFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAV 124
F ++ K ++ + + +E V + + +A ++ P ++
Sbjct: 92 IFDDAYK--SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 149
Query: 125 LTQIDQLKKKSTGLSGRTLRKIPF 148
++ D L + + I
Sbjct: 150 TSRKDVL--QEMEMLNAFSTTIHV 171
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 39.6 bits (91), Expect = 1e-04
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITE 52
N+VV++ G PG G T+ + L + ++
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 37
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 40.1 bits (92), Expect = 1e-04
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR--LQSKYKITEFIEINSHSLFSKYFSESGKL 72
+ L+ G TGK+S+ K +L++ K E I+ + E KL
Sbjct: 28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKL 87
Query: 73 VQKMFNKIK 81
V+++ + +K
Sbjct: 88 VKRLPSLLK 96
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 39.2 bits (90), Expect = 2e-04
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
+ R +LL+GPPGTGKT + +AVA + F IN + SK G+
Sbjct: 35 VKPPRGILLYGPPGTGKTLIARAVANETGAF---------FFLINGPEIMSKLA---GES 82
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSG 111
+ +EA + ++ + IDE++++ RE
Sbjct: 83 ESNLRKAFEEAEKNAPAI--IFIDELDAIAPKREKTHGE 119
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 38.8 bits (89), Expect = 2e-04
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R V L GPPG GKT+L ++ L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 38.5 bits (88), Expect = 3e-04
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
++ ++ GP G GK++ CK +A +L
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSA 30
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 37.4 bits (85), Expect = 6e-04
Identities = 14/92 (15%), Positives = 32/92 (34%)
Query: 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQ 74
+ + V + G +GK+ L +A + +Y E + +S+ ++
Sbjct: 6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 65
Query: 75 KMFNKIKEAVEYEESLVCLLIDEIESLTRARE 106
I AV + + + D I + +
Sbjct: 66 GHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQ 97
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 36.9 bits (84), Expect = 0.001
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 24/125 (19%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL GPPG GKT+L + +H L SG ++K +
Sbjct: 38 LLLFGPPGLGKTTLAH---------------------VIAHELGVNLRVTSGPAIEKPGD 76
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGL 138
E L IDEI L+R E + P+ V++ V+ Q + L
Sbjct: 77 LAAILANSLEEGDILFIDEIHRLSRQAEEHLY---PAMEDFVMDIVIGQGPAARTIRLEL 133
Query: 139 SGRTL 143
TL
Sbjct: 134 PRFTL 138
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 36.8 bits (85), Expect = 0.001
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
VL+ G G GK + + + + LS R + + I ++ F +
Sbjct: 26 VLITGESGVGKEVVARLIHK-LSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS 84
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRA 104
+ E + L +DEI L+
Sbjct: 85 SKEGFFELADGGT-LFLDEIGELSLE 109
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 36.5 bits (83), Expect = 0.001
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 2 KFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
FS +V V+ + G PG GK + C+ + + S
Sbjct: 2 AFSPDQVS--------VIFVLGGPGAGKGTQCEKLVKDYSF 34
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 36.8 bits (84), Expect = 0.002
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 8 VKSNIISWNRVVLLHGPPGTGKT 30
++ +I R+ ++ PG GKT
Sbjct: 1 IEDDIFRKKRLTIMDLHPGAGKT 23
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 36.5 bits (83), Expect = 0.002
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60
VL+ G GTGK++ +A+A L + + E ++S +
Sbjct: 31 VLVFGDRGTGKSTAVRALAALL-----PEIEAVEGCPVSSPN 67
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 36.2 bits (82), Expect = 0.002
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42
V+ + GP G GK +LCKA+A+ L
Sbjct: 5 VITIDGPSGAGKGTLCKAMAEALQW 29
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 35.5 bits (80), Expect = 0.002
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH 59
+ L G +GK ++ +A+ L+ + + +
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE 49
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 35.6 bits (81), Expect = 0.003
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQS 46
VV+ G PG GK++ + +
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 44
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 35.3 bits (80), Expect = 0.003
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF 66
+LL G PG GKT+L K +A K ++ + + ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDC 54
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 35.1 bits (79), Expect = 0.003
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
+++L G PG+GK++ + K
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKN 26
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 35.3 bits (80), Expect = 0.003
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFI 54
+R +++ GP GTGK++L K + + T
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 35.0 bits (79), Expect = 0.003
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ VL+ G PG+GK+++ + +A+ L + L
Sbjct: 3 KAVLV-GLPGSGKSTIGRRLAKALGVGL 29
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 35.5 bits (81), Expect = 0.004
Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 16/182 (8%)
Query: 11 NIISWNRV---VLLHGPPGTGKTSLCKAVAQKL------SIRLQSKYKITEFIEINSHSL 61
N +S R+ L G G GKTS+ + +A+ L + IE
Sbjct: 26 NGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 85
Query: 62 FSKYFSESGKLVQKMFNKIKEAVE--YEESLVCLLIDEIESLTRARESVMSGT--EPSDG 117
+ + S V+ + + LIDE+ L+R + + T EP +
Sbjct: 86 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 145
Query: 118 VRVVNAVLTQIDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLL 177
V+ +L D K T LS + L + + IA E L LL
Sbjct: 146 VKF---LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 202
Query: 178 VE 179
Sbjct: 203 AR 204
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 35.4 bits (81), Expect = 0.004
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR-----LQSKYKITEFIEINSHSLFSKYFSESGKLV 73
+L G PG GKT++ + +AQ++ L+ K + + SL + G+
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK----RIVSLQMGSLLAGA-KYRGEFE 100
Query: 74 QKMFNKIKEAVEYEESLVCLLIDEIESLTRARES 107
+++ I+E V+ + ++ L IDE+ ++ A ++
Sbjct: 101 ERLKAVIQEVVQSQGEVI-LFIDELHTVVGAGKA 133
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 34.9 bits (79), Expect = 0.004
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
VV + G PG+GK + C + +
Sbjct: 7 NVVFVLGGPGSGKGTQCANIVRDFGW 32
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 35.5 bits (81), Expect = 0.005
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE 68
NI L+ GP G GKT + + +A+ + K + T+F E + + S
Sbjct: 49 PKNI-------LMIGPTGVGKTEIARRLAKLANAPF-IKVEATKFTE--VGYVGKEVDSI 98
Query: 69 SGKLVQKMFNKIKEA 83
L +++
Sbjct: 99 IRDLTDSAMKLVRQQ 113
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 34.6 bits (78), Expect = 0.005
Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 4/146 (2%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMF 77
++ GTGKT+L K + L R + + K +S +L +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGA 60
Query: 78 NKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTG 137
+ A + +L+ DE E + S M T D + V +I ++ G
Sbjct: 61 AQTIVASQQRWALMTETPDEEELDLQFLASRMD-TSKLDLILVEGFKHEEIAKIVLFRDG 119
Query: 138 LSGRTLRKIPFLTFVKYISNNSVSME 163
R + + S+ ++++
Sbjct: 120 AGHRPEELVIDRHVIAVASDVPLNLD 145
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 34.3 bits (77), Expect = 0.006
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
K NI L GP G GK+++ + +AQ+L++
Sbjct: 2 KRNIF-------LVGPMGAGKSTIGRQLAQQLNME 29
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 34.6 bits (78), Expect = 0.006
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++ ++ G PG GK+++ V + L +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 34.2 bits (77), Expect = 0.007
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
R V+L GP G GK++L K + Q+ S
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHS 25
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 34.6 bits (78), Expect = 0.008
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQS 46
+ + GP +GK+++ K +A+
Sbjct: 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLD 33
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 34.1 bits (77), Expect = 0.008
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R VLL GPPG GK + +A+ +
Sbjct: 5 RAVLL-GPPGAGKGTQAPKLAKNFCV 29
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 34.1 bits (77), Expect = 0.009
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R+VL+ GPPG GK + + ++
Sbjct: 4 RMVLI-GPPGAGKGTQAPNLQERFHA 28
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 33.8 bits (76), Expect = 0.009
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
+L+ G PGTGKTS+ + +A +L
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELD 30
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 34.2 bits (77), Expect = 0.009
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
+ ++++ + G PG+GK + C+ + QK
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGY 34
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 34.2 bits (77), Expect = 0.009
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42
VV + G PG GK + C + +K
Sbjct: 3 VVFVLGGPGAGKGTQCARIVEKYGY 27
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 34.2 bits (77), Expect = 0.009
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
++++ G P GKT + K + + L
Sbjct: 4 LIVMVGLPARGKTYISKKLTRYL 26
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 33.8 bits (76), Expect = 0.010
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ + G G G T++ + +A+ L
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEF 30
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 33.9 bits (76), Expect = 0.011
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 10 SNIISWNRV--VLLHGPPGTGKTSLCKAVAQKL---SIRLQSKYKITEFIEINSHSLFSK 64
+ + +L +GPPGTGKTS A+ ++L + ++ E + K
Sbjct: 25 KKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK 84
Query: 65 YFSESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRA 104
+ + V K E + +++DE +S+T
Sbjct: 85 VKNFARLTVSKPSKHDLENYPCPPYKI-IILDEADSMTAD 123
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 33.7 bits (76), Expect = 0.012
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42
V++ G P +GK + C+ + K +
Sbjct: 5 KVMISGAPASGKGTQCELIKTKYQL 29
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 34.0 bits (76), Expect = 0.012
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 1/163 (0%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
R +L+GPPG GKT+ VAQ+L + ++ + K ++ +V
Sbjct: 53 RAAMLYGPPGIGKTTAAHLVAQELGYD-ILEQNASDVRSKTLLNAGVKNALDNMSVVGYF 111
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKST 136
+ + + V ++ + R V + ++ L K
Sbjct: 112 KHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRP 171
Query: 137 GLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVE 179
+ S L+ V+D L++
Sbjct: 172 FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQ 214
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 33.5 bits (76), Expect = 0.012
Identities = 5/42 (11%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60
+L++G + + + + + + K ++ +EI+
Sbjct: 18 ILINGEDLSYPREVSLELPEYV---EKFPPKASDVLEIDPEG 56
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 33.7 bits (76), Expect = 0.013
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R ++ G PG+GK ++ + + +
Sbjct: 8 RAAIM-GAPGSGKGTVSSRITKHFEL 32
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 33.4 bits (75), Expect = 0.013
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
RVV+L GP GK+++ + + +++
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERI 26
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 33.3 bits (75), Expect = 0.014
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
VLL GPPG GK + +A+KL I
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGI 26
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 33.6 bits (75), Expect = 0.014
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 10 SNIISWNRV---VLLHGPPGTGKTSLCKAVAQKL 40
++ R +LL+GP GTGK + C A+ + +
Sbjct: 24 KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 57
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 33.8 bits (76), Expect = 0.014
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGK---LVQK 75
VLL GPPG GKT+L +A + LQ+ +T + + + + L
Sbjct: 38 VLLAGPPGLGKTTLAHIIASE----LQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 93
Query: 76 MFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNA 123
+++ +AVE E + +I+ + S S +V A
Sbjct: 94 EIHRLNKAVE-ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 140
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.7 bits (73), Expect = 0.015
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 10 SNIISWNRVVLLHGPPGTGKT 30
S+++ +L PG GKT
Sbjct: 1 SHMLKKGMTTVLDFHPGAGKT 21
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 32.9 bits (74), Expect = 0.017
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+ ++L G G G+ + + K R
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFA 32
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.0 bits (74), Expect = 0.019
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R++LL G P GK + + + +K I
Sbjct: 2 RIILL-GAPVAGKGTQAQFIMEKYGIP 27
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 33.0 bits (74), Expect = 0.020
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+VL+ G PG GK + + + I
Sbjct: 2 NLVLM-GLPGAGKGTQAEKIVAAYGI 26
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.2 bits (74), Expect = 0.021
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ + G TGKT +C +A +
Sbjct: 23 GSITEMFGEFRTGKTQICHTLAVTCQLP 50
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 33.2 bits (74), Expect = 0.021
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLF 62
+ + L G TGK+ LC +A I L + + I++ F
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF 80
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 33.2 bits (74), Expect = 0.025
Identities = 18/155 (11%), Positives = 43/155 (27%), Gaps = 5/155 (3%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKL 72
I + G TGKT L + + Y + I I++ + F L
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR-----L 88
Query: 73 VQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLK 132
+ ++++ E + V + G+ + + + + +
Sbjct: 89 RDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 148
Query: 133 KKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLI 167
+G R+ + + S +
Sbjct: 149 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVF 183
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 33.1 bits (74), Expect = 0.026
Identities = 12/84 (14%), Positives = 20/84 (23%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQK 75
V G G+GKT + L Y + + Y G +
Sbjct: 34 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE 93
Query: 76 MFNKIKEAVEYEESLVCLLIDEIE 99
++ E + V
Sbjct: 94 RIMQMAEHAGIDGQTVLDNTFVAR 117
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 33.0 bits (74), Expect = 0.026
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
++L G GTGKT L + +K + F S + + G ++M
Sbjct: 27 SIILATGATGTGKTLLVSRFVENA---CANKERAILFAYEESRAQLLRNAYSWGMDFEEM 83
Query: 77 FNKIKEAVEYEESLVCLLIDEIESLTRA 104
+ + L D ++ +
Sbjct: 84 ERQNLLKIVCAYPESAGLEDHLQIIKSE 111
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.7 bits (73), Expect = 0.026
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYK-ITEFIEINSHSLFSKYFSESGKLVQKM 76
V L G G GKT++ A+ + L Y + I + + + V+++
Sbjct: 21 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRI 80
Query: 77 FNKIK 81
K
Sbjct: 81 AEVAK 85
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 32.7 bits (73), Expect = 0.027
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 16 NRVVLLHGPPGTGKTSLC--KAVAQKLSIRLQSKYKITEFI---EINSHSLFSKYFSESG 70
+ + G G+GKT L AV +L +I + G
Sbjct: 36 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRG 95
Query: 71 KLVQKMFNKIKEAVEYEESLVCLLIDEIE 99
++ I A + + LL+ + E
Sbjct: 96 LDPDEVLKHIYVARAFNSNHQMLLVQQAE 124
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.7 bits (73), Expect = 0.028
Identities = 20/96 (20%), Positives = 25/96 (26%), Gaps = 9/96 (9%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIE--------INSHSLFSKYFSE 68
R L+ G GTGKT I F E S +
Sbjct: 27 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVD 86
Query: 69 SGKLVQKMFNKIKEAVEYEESLVCL-LIDEIESLTR 103
GKL + E E LI+ I +
Sbjct: 87 EGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQ 122
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 32.5 bits (73), Expect = 0.028
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+VL+ G PG GK + + +K
Sbjct: 2 NIVLM-GLPGAGKGTQADRIVEKYGT 26
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 32.7 bits (73), Expect = 0.033
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLS 41
V L P G GK+ L +A +++
Sbjct: 31 VGALVSPGGAGKSMLALQLAAQIA 54
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 32.5 bits (73), Expect = 0.037
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEIN 57
+ + LHG G+GK+ + K + Y +++ +
Sbjct: 44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 85
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.0 bits (71), Expect = 0.039
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIE 55
L+ PG G +L A+++ L + +K
Sbjct: 28 LIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCR 63
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 32.3 bits (73), Expect = 0.046
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI-RLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMF 77
LL G G GKT++ + +A ++ + ++ SL + G ++
Sbjct: 42 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT-KYRGDFEKRFK 100
Query: 78 NKIKEAVEYEESLVCLLIDEIESLTRA 104
+K+ + S++ IDEI ++ A
Sbjct: 101 ALLKQLEQDTNSILF--IDEIHTIIGA 125
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 32.1 bits (72), Expect = 0.049
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMFN 78
+LL GP G+GKT + + +A+ L I + + + + +L+Q
Sbjct: 71 ILLIGPTGSGKTLMAQTLAKHLDIPIA---ISDATSLTEAGYVGEDVENILTRLLQASDW 127
Query: 79 KIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQIDQLKKKSTGL 138
+++A ++ +V IDEI+ ++R E+ + S G V A+L ++
Sbjct: 128 NVQKA---QKGIV--FIDEIDKISRLSENRSITRDVS-GEGVQQALLKIVEGSLVNIPPK 181
Query: 139 SGRTLRKIPFLTFVKYISNNSVSM 162
G RK P F++ +++ + +
Sbjct: 182 GG---RKHPEGNFIQIDTSDILFI 202
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.5 bits (70), Expect = 0.069
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
+V+ G G+GKT+L + L
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYL 24
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 31.0 bits (69), Expect = 0.070
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
++ G G+GK++L +A+A+ L +
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLV 27
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 31.1 bits (69), Expect = 0.070
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
+++ G PG GKT+L K + ++L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 31.3 bits (69), Expect = 0.074
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLS 41
V+ + G +GKT+L ++Q L
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLR 47
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 31.7 bits (71), Expect = 0.075
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMF 77
+ GP G+GK+ ++ L KY + I S F + KL ++
Sbjct: 29 FIFFSGPQGSGKSFTSI----QIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFK 84
Query: 78 NKI 80
N
Sbjct: 85 NNK 87
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.6 bits (68), Expect = 0.13
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+ ++ P G GK+SL +A+ +
Sbjct: 3 TLYIVSAPSGAGKSSLIQALLKT 25
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.8 bits (66), Expect = 0.19
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
V + G +GKT+L +
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.9 bits (66), Expect = 0.20
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKIT 51
++ + G +GK+S+C + Q L +
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQ 37
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 29.4 bits (65), Expect = 0.20
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 16 NRVVLLHGPPGTGKT 30
+V LH P G+GK+
Sbjct: 8 FQVAHLHAPTGSGKS 22
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 30.2 bits (67), Expect = 0.23
Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 14/146 (9%)
Query: 6 SKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL-----SIRLQSKYKITEFIEINSHS 60
+K ++ ++++ G G GK+S ++ + + + + +
Sbjct: 23 GNLKQEDVNSLTILVM-GKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT 81
Query: 61 LFSKYFS---ESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARES-----VMSGT 112
L E G + N IK + + V L +D +++ ++ +
Sbjct: 82 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDS 141
Query: 113 EPSDGVRVVNAVLTQIDQLKKKSTGL 138
LT
Sbjct: 142 FGKGIWNKAIVALTHAQFSPPDGLPY 167
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 30.0 bits (66), Expect = 0.24
Identities = 9/71 (12%), Positives = 27/71 (38%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMF 77
V+++ G GK++ + A + + K + E + + +++
Sbjct: 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD 96
Query: 78 NKIKEAVEYEE 88
+ +E +E +
Sbjct: 97 SLKREIIENGK 107
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 29.6 bits (66), Expect = 0.26
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60
V+L+ G G GKT+ KL+ + + + K ++
Sbjct: 11 VILMVGVNGVGKTTTIG----KLARQFEQQGKSVMLAAGDTFR 49
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 29.5 bits (66), Expect = 0.29
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 6 SKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
+ + L GP TGKT++ +A+A +
Sbjct: 94 LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 29.3 bits (65), Expect = 0.29
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSK 47
+V L+G G GKT+L + + Q + + K
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVK 64
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.35
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60
+ L G G+GKT+ KL++ + K + + ++
Sbjct: 11 NLWFLVGLQGSGKTTTAA----KLALYYKGKGRRPLLVAADTQR 50
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 29.0 bits (65), Expect = 0.37
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++ GP TGK+ + +
Sbjct: 54 NCLVFCGPANTGKSYFGMSFIHFI 77
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.4 bits (65), Expect = 0.37
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60
V++L G GTGK + KL+ + K + + +
Sbjct: 14 VIMLVGVQGTGKATTAG----KLAYFYKKKGFKVGLVGADVYR 52
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 0.48
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
RVVL+ G G GKT+ + +
Sbjct: 7 RVVLVVGVNGVGKTTTIAKLGRYYQ 31
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 29.1 bits (64), Expect = 0.51
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYK 49
R+ ++ G PGTGKT+ + L +
Sbjct: 163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERC 196
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.0 bits (63), Expect = 0.59
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 1 MKFSHSKVKSNIISWNRVVL--------LHGPPGTGKTSLCKAVAQKLSIRLQSK 47
MK VK N S + V+ + G G+GK+SL A+ L L+ K
Sbjct: 1 MKLERVTVK-NFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIK 54
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.5 bits (63), Expect = 0.61
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHS 60
V+++ G GTGKT+ C KL+ + K ++
Sbjct: 13 VIMVVGVNGTGKTTSCG----KLAKMFVDEGKSVVLAAADTFR 51
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 28.4 bits (62), Expect = 0.73
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ +++L G G GKT++ A+A +L+
Sbjct: 20 HGLIMLMGKGGVGKTTMAAAIAVRLADM 47
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 28.4 bits (62), Expect = 0.91
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41
M+F + + G G GKTS+ A A +L+
Sbjct: 1 MQFLQNI--------PPYLFFTGKGGVGKTSISCATAIRLA 33
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 28.3 bits (62), Expect = 0.93
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKMF 77
L GP G GKT + +++ L I L ++ ++E++E H++ + G +
Sbjct: 54 SFLFAGPTGVGKTEVTVQLSKALGIELL-RFDMSEYME--RHTVSRLIGAPPGYVGFDQG 110
Query: 78 NKIKEAVEYEESLVCLLIDEIESLTR 103
+ +A + LL+DEIE
Sbjct: 111 GLLTDA-VIKHPHAVLLLDEIEKAHP 135
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.3 bits (62), Expect = 1.0
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSE 68
G PG GK++ +A + L + I ++ S +
Sbjct: 61 GTPGAGKSTFLEA----FGMLLIREGLKVAVIAVDPSSPVTGGSIL 102
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 27.9 bits (61), Expect = 1.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G PG GK++ A+ L
Sbjct: 58 GVPGVGKSTTIDALGSLL 75
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 27.7 bits (60), Expect = 1.1
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYF 66
VL+ G G+GKT+ + + + ++ +N +L +
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMY 59
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 1.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R +L++G GTGK+ L + +A +R
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLR 77
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.2 bits (60), Expect = 1.5
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQK 39
VL+ G G GK+ + Q+
Sbjct: 14 GLGVLITGDSGVGKSETALELVQR 37
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 27.4 bits (60), Expect = 1.7
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLS 41
++ + G GK++ + + LS
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLS 105
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 27.1 bits (59), Expect = 1.7
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
+ L G +GK++L + +L
Sbjct: 26 TIWLTGLSASGKSTLAVELEHQL 48
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.8 bits (59), Expect = 1.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQK 39
VLL G G GK+ + K
Sbjct: 15 GVGVLLTGRSGIGKSECALDLINK 38
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 26.9 bits (58), Expect = 1.9
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G G GK +L + ++
Sbjct: 7 GVDGAGKRTLVEKLSGAF 24
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 26.8 bits (58), Expect = 1.9
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G GK++ + + + L
Sbjct: 10 GVDRAGKSTQSRKLVEAL 27
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 26.9 bits (58), Expect = 2.0
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 10 SNIISWNRV--VLLHGPPGTGKTSLCKAVAQKL 40
I + +++ G PG GKT+ +A +L
Sbjct: 28 QQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 60
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 26.8 bits (58), Expect = 2.0
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQSKYKITEF 53
G G GKT+ V + L T
Sbjct: 9 GLEGAGKTTARNVVVETLEQLGIRDMVFTRE 39
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 27.3 bits (59), Expect = 2.1
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 12 IISWNRVVLLHGPPGTGKTS-LCKAVAQKLSIRLQSKYKI 50
+ + +L+ G+GKT L +A ++ + + + I
Sbjct: 20 VRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNI 59
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 26.8 bits (58), Expect = 2.2
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 12/172 (6%)
Query: 10 SNIISWNRV--VLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFS 67
+ + + +L GPPG GKT+ A+A++ L + F+E+N+
Sbjct: 37 KHYVKTGSMPHLLFAGPPGVGKTTAALALARE----LFGENWRHNFLELNASDERGIN-- 90
Query: 68 ESGKLVQKMFNKIKEAVEYEESLVCLLIDEIESLTRARESVMSGTEPSDGVRVVNAVLTQ 127
+ +K+ + S + +DE ++LT+ + + T V +L+
Sbjct: 91 ---VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSC 146
Query: 128 IDQLKKKSTGLSGRTLRKIPFLTFVKYISNNSVSMENFLIALEKTVLDLLVE 179
K S + + L EN + L + L ++
Sbjct: 147 NYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 198
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.4 bits (58), Expect = 2.4
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
VL+ G G GK+
Sbjct: 15 GVGVLITGDSGIGKSETA 32
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.8 bits (59), Expect = 2.6
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLS 41
++ + G G G +++ Q
Sbjct: 6 IISVTGSSGAGTSTVKHTFDQIFR 29
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 26.9 bits (59), Expect = 2.6
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQSKYKITE 52
G G GKT+ + +I I E
Sbjct: 12 GAYGIGKTTAAEEFLHHFAITPNRILLIGE 41
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 26.3 bits (57), Expect = 2.9
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSH--SLFSK 64
+ N+ S + ++G GTGKT L +A + R + + L
Sbjct: 27 EALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG 86
Query: 65 YFSESGKLVQKMFNKIKEAVEY 86
+E + + + + + V++
Sbjct: 87 TINEFRNMYKSVDLLLLDDVQF 108
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.4 bits (57), Expect = 3.2
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQSKYKITEF 53
G TGKT+ C + + +LQ K+ +F
Sbjct: 10 GLDRTGKTTQCNILYK----KLQPNCKLLKF 36
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 26.1 bits (56), Expect = 3.4
Identities = 10/50 (20%), Positives = 14/50 (28%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKY 65
V L G G GK++ A L L + + K
Sbjct: 24 ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKG 73
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 26.5 bits (58), Expect = 3.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQSKY 48
G G GK++ + +A S + Y
Sbjct: 13 GVYGIGKSTTGRVMASAASGGSPTLY 38
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 26.3 bits (56), Expect = 3.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSK-YKITEFIEINSHSLF 62
+ L+ G G+GK+SL A+ L L+ K K EF ++ + +
Sbjct: 23 EGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTY 70
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.1 bits (56), Expect = 4.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 17 RVVLLHGPPGTGKTSL 32
R VL G +GKT L
Sbjct: 1 RAVLFVGLCDSGKTLL 16
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 26.1 bits (56), Expect = 4.5
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ + + G GK++ + Q
Sbjct: 3 KKISIEGNIAAGKSTFVNILKQLC 26
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.1 bits (57), Expect = 4.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 23 GPPGTGKTSLCKAVAQKLS 41
GP G GKT+ + + S
Sbjct: 11 GPHGMGKTTTTQLLVALGS 29
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 25.8 bits (55), Expect = 4.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
R + + G GK++ K + +
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.4 bits (54), Expect = 5.9
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+++ L G GKT+L +
Sbjct: 2 KLLFL-GLDNAGKTTLLHMLKND 23
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.4 bits (55), Expect = 6.0
Identities = 11/59 (18%), Positives = 19/59 (32%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQKM 76
+ GP G GKT+ + +A Y + N + + G + Q
Sbjct: 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 25.8 bits (55), Expect = 6.3
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 19 VLLHGPPGTGKTS 31
L+ G+GKT
Sbjct: 17 CLVLAGAGSGKTR 29
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.3 bits (55), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
VV HGP G GKT+L K ++
Sbjct: 29 VVNFHGPNGIGKTTLLKTIS 48
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 25.8 bits (56), Expect = 7.3
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSLFSKYFSESGKLVQK 75
N+ L+ G G GKT K V L+ + K E ++ +++
Sbjct: 121 NQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEA 180
Query: 76 MFN 78
N
Sbjct: 181 YGN 183
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 25.4 bits (54), Expect = 7.3
Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 7/180 (3%)
Query: 14 SWNRVVLLHGPPGTGKTSLCKAVA---QKLSIRLQSKYKITEFIEINSHSLFSKYFSESG 70
S+ +++ GP +GKTSL + + ++ Q ++ + +
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60
Query: 71 KLVQKMFNKIKEAVEYEESLVCLLIDE--IESLTRARESVMSGTEPSDGVRV-VNAVLTQ 127
+ + V+ +V +D + + ++S TE S + + +
Sbjct: 61 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 120
Query: 128 IDQLKKKSTGLSGRTLRK-IPFLTFVKYISNNSVSMENFLIALEKTVLDLLVEEKSLPLK 186
+ + L I + + S N V + + LD+L
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFA 180
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.0 bits (53), Expect = 7.6
Identities = 6/16 (37%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
R+++L G GKT++
Sbjct: 4 RLLML-GLDNAGKTTI 18
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 24.9 bits (53), Expect = 7.6
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R++LL G GKT+L K +A +
Sbjct: 18 RILLL-GLDNAGKTTLLKQLASE 39
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 24.8 bits (53), Expect = 8.2
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQSKYKITEFIEINSHSL 61
++VL+ G G GKT L + Q T ++ ++
Sbjct: 7 KIVLI-GNAGVGKTCLVRRFTQG---LFPPGQGATIGVDFMIKTV 47
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 25.0 bits (53), Expect = 9.0
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 10 SNIISWNRV--VLLHGPPGTGKTSLCKAVAQKL 40
+ ++ +L +GPPGTGKTS A+A+++
Sbjct: 27 RKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.371
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 872,962
Number of extensions: 37403
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 167
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.8 bits)