Query psy3998
Match_columns 102
No_of_seqs 106 out of 1093
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 22:43:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 9.3E-33 2E-37 193.4 9.2 102 1-102 93-195 (663)
2 PTZ00009 heat shock 70 kDa pro 99.9 1.3E-25 2.9E-30 167.3 11.1 102 1-102 61-163 (653)
3 KOG0103|consensus 99.9 1E-25 2.2E-30 164.8 7.9 102 1-102 58-160 (727)
4 PTZ00400 DnaK-type molecular c 99.9 1.6E-24 3.4E-29 161.7 10.6 98 1-102 99-197 (663)
5 PTZ00186 heat shock 70 kDa pre 99.9 7.7E-24 1.7E-28 157.7 10.0 99 1-102 84-183 (657)
6 PF00012 HSP70: Hsp70 protein; 99.9 1.4E-23 3.1E-28 154.5 10.7 102 1-102 56-158 (602)
7 PRK13410 molecular chaperone D 99.9 1.9E-23 4.1E-28 156.0 10.1 98 1-102 60-158 (668)
8 KOG0101|consensus 99.9 1.1E-23 2.3E-28 154.2 6.1 102 1-102 64-166 (620)
9 PRK13411 molecular chaperone D 99.9 4.7E-23 1E-27 153.7 9.7 96 1-102 60-156 (653)
10 PLN03184 chloroplast Hsp70; Pr 99.9 1.3E-22 2.8E-27 151.7 10.0 98 1-102 97-195 (673)
11 PRK00290 dnaK molecular chaper 99.9 2.1E-22 4.6E-27 149.6 10.0 96 1-102 60-156 (627)
12 TIGR02350 prok_dnaK chaperone 99.9 3.3E-22 7.2E-27 147.8 9.8 96 1-102 58-153 (595)
13 KOG0102|consensus 99.9 1.8E-22 4E-27 145.0 7.6 98 1-102 85-183 (640)
14 KOG0104|consensus 99.9 7.1E-22 1.5E-26 145.8 8.8 101 1-102 80-181 (902)
15 TIGR01991 HscA Fe-S protein as 99.9 1.1E-21 2.4E-26 145.2 8.8 95 1-102 57-152 (599)
16 CHL00094 dnaK heat shock prote 99.9 2.6E-21 5.6E-26 143.8 9.9 98 1-102 60-158 (621)
17 PRK05183 hscA chaperone protei 99.9 3.7E-21 7.9E-26 142.8 9.2 96 1-102 76-172 (616)
18 PRK01433 hscA chaperone protei 99.8 6.8E-19 1.5E-23 130.3 8.5 94 6-102 71-164 (595)
19 COG0443 DnaK Molecular chapero 99.8 2E-18 4.4E-23 127.4 8.4 80 1-102 64-143 (579)
20 PRK11678 putative chaperone; P 99.4 1.2E-12 2.7E-17 94.5 7.2 48 55-102 125-180 (450)
21 TIGR02529 EutJ ethanolamine ut 98.8 5.1E-09 1.1E-13 70.3 4.8 51 52-102 34-84 (239)
22 PRK13929 rod-share determining 98.4 8.4E-07 1.8E-11 62.2 5.6 47 56-102 73-121 (335)
23 PRK15080 ethanolamine utilizat 97.7 0.0001 2.3E-09 50.3 5.6 48 55-102 64-111 (267)
24 PRK13928 rod shape-determining 97.6 0.00017 3.8E-09 50.5 5.3 49 54-102 70-118 (336)
25 PRK13930 rod shape-determining 97.3 0.00067 1.5E-08 47.3 5.5 45 58-102 79-123 (335)
26 TIGR00904 mreB cell shape dete 97.2 0.0011 2.3E-08 46.5 5.2 43 60-102 79-121 (333)
27 PRK13927 rod shape-determining 97.1 0.0017 3.6E-08 45.4 5.5 42 60-102 78-119 (334)
28 PF06723 MreB_Mbl: MreB/Mbl pr 95.6 0.024 5.2E-07 40.0 4.4 46 57-102 71-116 (326)
29 COG1077 MreB Actin-like ATPase 93.1 0.25 5.4E-06 35.0 4.7 46 57-102 78-124 (342)
30 cd06007 R3H_DEXH_helicase R3H 89.3 1.2 2.7E-05 23.6 4.0 33 68-102 5-37 (59)
31 cd02640 R3H_NRF R3H domain of 84.1 3.9 8.4E-05 21.7 4.2 35 67-102 4-38 (60)
32 smart00842 FtsA Cell division 82.4 3.8 8.2E-05 26.3 4.5 37 53-90 42-78 (187)
33 PF03484 B5: tRNA synthetase B 81.0 3.5 7.6E-05 22.3 3.4 57 7-65 8-66 (70)
34 smart00874 B5 tRNA synthetase 76.9 9.2 0.0002 20.4 4.6 30 7-36 8-37 (71)
35 cd02641 R3H_Smubp-2_like R3H d 75.9 9.3 0.0002 20.1 4.0 35 67-102 4-38 (60)
36 cd02646 R3H_G-patch R3H domain 73.6 8.6 0.00019 20.0 3.5 34 65-101 2-35 (58)
37 PF10726 DUF2518: Protein of f 72.4 6 0.00013 24.8 3.1 21 80-100 81-101 (145)
38 TIGR01174 ftsA cell division p 69.7 11 0.00024 26.8 4.4 37 52-89 42-78 (371)
39 cd02639 R3H_RRM R3H domain of 60.9 11 0.00025 19.9 2.4 21 80-100 16-36 (60)
40 PRK09472 ftsA cell division pr 60.4 21 0.00045 26.1 4.4 33 57-89 54-86 (420)
41 PF14085 DUF4265: Domain of un 59.5 36 0.00078 20.3 6.1 62 35-101 47-108 (117)
42 PLN03220 uncharacterized prote 57.0 18 0.00039 21.5 3.0 41 53-93 56-96 (105)
43 PF02519 Auxin_inducible: Auxi 55.8 37 0.00079 19.9 4.2 40 53-93 53-92 (100)
44 PLN03090 auxin-responsive fami 53.0 47 0.001 19.7 4.7 38 53-91 57-94 (104)
45 PF07520 SrfB: Virulence facto 50.7 49 0.0011 27.4 5.2 67 35-101 393-478 (1002)
46 PF10982 DUF2789: Protein of u 49.6 16 0.00036 20.3 1.9 15 87-101 42-56 (74)
47 COG0849 ftsA Cell division ATP 48.8 40 0.00086 25.0 4.3 38 55-92 50-87 (418)
48 PRK05528 methionine sulfoxide 47.8 35 0.00076 21.7 3.4 57 42-100 49-105 (156)
49 PLN03219 uncharacterized prote 47.5 29 0.00063 20.8 2.8 42 53-94 58-99 (108)
50 smart00268 ACTIN Actin. ACTIN 47.2 57 0.0012 23.1 4.8 42 57-101 74-117 (373)
51 PRK14054 methionine sulfoxide 45.5 30 0.00066 22.3 2.9 57 42-100 56-112 (172)
52 COG4820 EutJ Ethanolamine util 44.5 24 0.00052 23.9 2.4 31 60-90 74-104 (277)
53 PF13079 DUF3916: Protein of u 44.4 45 0.00097 21.2 3.5 38 55-92 38-82 (153)
54 COG1436 NtpG Archaeal/vacuolar 44.3 67 0.0015 19.0 4.5 30 59-88 52-81 (104)
55 cd00012 ACTIN Actin; An ubiqui 42.4 78 0.0017 22.4 4.9 22 79-100 95-116 (371)
56 PHA02896 A-type inclusion like 42.0 40 0.00087 25.8 3.4 37 55-91 137-173 (616)
57 TIGR00401 msrA methionine-S-su 41.8 36 0.00078 21.4 2.8 57 42-100 53-109 (149)
58 PF03389 MobA_MobL: MobA/MobL 41.0 32 0.00069 22.9 2.6 24 77-100 66-89 (216)
59 cd02426 Pol_gamma_b_Cterm C-te 39.5 51 0.0011 19.9 3.2 42 26-67 80-126 (128)
60 PRK00058 methionine sulfoxide 39.4 47 0.001 22.3 3.2 57 42-100 98-154 (213)
61 PF11548 Receptor_IA-2: Protei 39.2 75 0.0016 18.4 3.6 39 41-80 45-83 (91)
62 cd08633 PI-PLCc_eta2 Catalytic 38.7 1.3E+02 0.0029 20.8 7.5 89 4-99 17-108 (254)
63 PF12434 Malate_DH: Malate deh 38.6 23 0.00049 15.7 1.1 12 91-102 10-21 (28)
64 PF08127 Propeptide_C1: Peptid 38.0 11 0.00024 18.3 0.1 16 4-19 24-39 (41)
65 PF05812 Herpes_BLRF2: Herpesv 37.9 27 0.00058 21.2 1.7 45 54-102 3-53 (118)
66 PF12971 NAGLU_N: Alpha-N-acet 37.7 51 0.0011 18.5 2.8 46 30-75 20-70 (86)
67 PRK13014 methionine sulfoxide 37.3 49 0.0011 21.7 3.0 57 42-100 61-117 (186)
68 TIGR03549 conserved hypothetic 37.1 41 0.00088 26.7 2.9 55 48-102 30-108 (718)
69 PF14628 DUF4454: Domain of un 36.7 31 0.00067 22.9 2.0 21 80-100 52-72 (216)
70 PRK05904 coproporphyrinogen II 36.1 1.6E+02 0.0035 21.1 6.0 55 43-101 58-112 (353)
71 KOG0855|consensus 35.9 28 0.00061 22.7 1.7 25 13-37 127-154 (211)
72 PTZ00061 DNA-directed RNA poly 35.3 1.4E+02 0.003 20.0 5.4 38 64-101 79-116 (205)
73 PLN03111 DNA-directed RNA poly 34.8 1.4E+02 0.0031 20.0 5.3 38 64-101 80-117 (206)
74 TIGR03061 pip_yhgE_Nterm YhgE/ 34.4 47 0.001 20.7 2.5 25 70-94 87-111 (164)
75 COG2082 CobH Precorrin isomera 34.2 1.4E+02 0.0031 20.0 4.8 35 64-100 141-177 (210)
76 PRK02048 4-hydroxy-3-methylbut 34.2 66 0.0014 25.1 3.6 93 2-99 111-217 (611)
77 KOG3493|consensus 33.5 19 0.00041 19.6 0.5 16 2-17 19-34 (73)
78 cd08630 PI-PLCc_delta3 Catalyt 33.1 1.7E+02 0.0036 20.3 7.5 89 4-99 17-108 (258)
79 COG5130 YIP3 Prenylated rab ac 32.8 28 0.00061 22.0 1.3 17 82-98 39-55 (169)
80 PF01861 DUF43: Protein of unk 31.5 67 0.0014 22.1 3.0 39 50-89 66-122 (243)
81 PF10788 DUF2603: Protein of u 31.2 1.4E+02 0.003 18.7 4.6 55 39-93 40-95 (137)
82 PF08154 NLE: NLE (NUC135) dom 30.7 69 0.0015 16.9 2.5 24 78-101 14-37 (65)
83 PF14893 PNMA: PNMA 30.6 99 0.0021 22.2 3.8 36 67-102 5-42 (331)
84 PF01187 MIF: Macrophage migra 30.6 1.2E+02 0.0025 17.8 3.7 33 54-86 9-41 (114)
85 cd08629 PI-PLCc_delta1 Catalyt 29.9 1.9E+02 0.0042 20.0 7.6 91 4-99 17-108 (258)
86 PRK00061 ribH 6,7-dimethyl-8-r 29.4 95 0.0021 19.7 3.3 35 57-91 24-58 (154)
87 PF11918 DUF3436: Domain of un 29.0 82 0.0018 16.5 2.4 17 52-68 36-52 (55)
88 PRK02114 formylmethanofuran--t 28.8 25 0.00054 24.7 0.6 16 73-88 86-101 (297)
89 PHA03162 hypothetical protein; 28.8 1.5E+02 0.0033 18.4 3.9 48 51-102 10-63 (135)
90 PRK02289 4-oxalocrotonate taut 28.3 93 0.002 15.9 2.7 19 83-101 5-23 (60)
91 PF00885 DMRL_synthase: 6,7-di 28.2 1.5E+02 0.0032 18.5 3.9 35 57-91 15-49 (144)
92 PRK09875 putative hydrolase; P 28.0 2.2E+02 0.0047 20.0 6.2 49 51-102 93-145 (292)
93 COG5494 Predicted thioredoxin/ 27.8 17 0.00037 24.6 -0.3 33 60-92 24-66 (265)
94 cd08631 PI-PLCc_delta4 Catalyt 27.5 2.2E+02 0.0047 19.8 7.7 89 4-99 17-108 (258)
95 cd08595 PI-PLCc_zeta Catalytic 27.4 2.2E+02 0.0047 19.8 7.7 89 4-99 17-108 (257)
96 PRK00564 hypA hydrogenase nick 27.3 1.3E+02 0.0028 18.0 3.4 30 59-88 6-35 (117)
97 PF12588 PSDC: Phophatidylseri 27.0 1.5E+02 0.0032 18.5 3.8 39 60-98 98-139 (141)
98 PRK13669 hypothetical protein; 26.8 65 0.0014 18.1 1.9 17 53-69 58-74 (78)
99 PF02593 dTMP_synthase: Thymid 26.7 1E+02 0.0022 20.7 3.2 58 4-71 156-215 (217)
100 PF12937 F-box-like: F-box-lik 26.7 20 0.00043 17.3 -0.1 13 55-67 4-16 (47)
101 cd08594 PI-PLCc_eta Catalytic 26.7 2.1E+02 0.0046 19.5 7.8 91 4-99 17-108 (227)
102 COG0225 MsrA Peptide methionin 26.1 57 0.0012 21.2 1.8 57 42-100 59-115 (174)
103 PF01155 HypA: Hydrogenase exp 25.9 94 0.002 18.4 2.7 30 59-88 6-35 (113)
104 COG0054 RibH Riboflavin syntha 25.7 1.9E+02 0.004 18.5 4.2 34 57-91 24-58 (152)
105 PRK05550 bifunctional methioni 25.5 1E+02 0.0022 21.7 3.1 57 42-100 180-236 (283)
106 TIGR00746 arcC carbamate kinas 25.2 2E+02 0.0043 20.4 4.6 35 7-41 122-156 (310)
107 PF01556 CTDII: DnaJ C termina 25.2 82 0.0018 17.2 2.2 18 79-96 63-80 (81)
108 PF00022 Actin: Actin; InterP 25.2 1.5E+02 0.0033 21.0 4.1 23 78-100 93-115 (393)
109 PF09883 DUF2110: Uncharacteri 25.1 1.7E+02 0.0038 19.8 4.0 61 40-100 87-154 (225)
110 PF01990 ATP-synt_F: ATP synth 25.1 63 0.0014 18.3 1.8 29 63-91 52-80 (95)
111 COG2450 Uncharacterized conser 25.0 1.8E+02 0.0038 17.9 4.1 34 56-89 77-113 (124)
112 PRK00694 4-hydroxy-3-methylbut 24.8 1.1E+02 0.0024 23.8 3.4 93 2-99 115-221 (606)
113 COG4598 HisP ABC-type histidin 24.6 84 0.0018 21.1 2.4 46 56-101 118-166 (256)
114 cd08632 PI-PLCc_eta1 Catalytic 24.3 2.5E+02 0.0054 19.5 7.7 89 4-99 17-108 (253)
115 PF14319 Zn_Tnp_IS91: Transpos 24.1 76 0.0016 18.8 2.0 29 65-93 73-101 (111)
116 TIGR00370 conserved hypothetic 23.9 1.6E+02 0.0036 19.4 3.8 48 38-92 40-87 (202)
117 PRK03681 hypA hydrogenase nick 23.7 1.6E+02 0.0035 17.5 3.4 30 59-88 6-35 (114)
118 PF00646 F-box: F-box domain; 23.6 34 0.00074 16.3 0.4 15 56-70 7-21 (48)
119 PF03780 Asp23: Asp23 family; 23.6 1.5E+02 0.0033 16.8 6.4 48 38-86 57-104 (108)
120 cd08596 PI-PLCc_epsilon Cataly 22.9 2.7E+02 0.0058 19.3 7.7 89 4-99 17-108 (254)
121 smart00256 FBOX A Receptor for 22.6 40 0.00088 15.1 0.6 12 56-67 2-13 (41)
122 PLN00197 beta-amylase; Provisi 22.5 1.5E+02 0.0033 23.0 3.7 32 54-85 242-273 (573)
123 COG4844 Uncharacterized protei 22.1 85 0.0018 17.2 1.8 17 54-70 59-75 (78)
124 CHL00034 rpl22 ribosomal prote 22.1 1.9E+02 0.0041 17.3 3.7 29 57-85 51-79 (117)
125 TIGR00114 lumazine-synth 6,7-d 22.1 1.7E+02 0.0036 18.2 3.3 33 58-91 13-46 (138)
126 PRK01395 V-type ATP synthase s 22.0 1.8E+02 0.0039 17.0 5.0 32 59-91 51-82 (104)
127 PLN02404 6,7-dimethyl-8-ribity 21.8 1.8E+02 0.004 18.1 3.5 33 58-91 20-53 (141)
128 KOG3915|consensus 21.6 2.5E+02 0.0054 21.6 4.5 81 12-99 156-241 (641)
129 PRK14018 trifunctional thiored 21.6 1.2E+02 0.0026 23.2 3.1 57 42-100 250-306 (521)
130 PRK02228 V-type ATP synthase s 21.4 1.8E+02 0.0039 16.8 4.7 40 62-101 53-93 (100)
131 PF14756 Pdase_C33_assoc: Pept 21.1 70 0.0015 19.5 1.5 22 50-71 91-112 (147)
132 PF09059 TyeA: TyeA; InterPro 21.0 36 0.00079 19.5 0.2 31 62-102 43-73 (87)
133 cd08593 PI-PLCc_delta Catalyti 20.7 3E+02 0.0065 19.1 7.6 91 4-99 17-108 (257)
134 PF08673 RsbU_N: Phosphoserine 20.5 66 0.0014 17.9 1.2 22 52-73 33-54 (77)
135 PF13713 BRX_N: Transcription 20.2 1.3E+02 0.0027 14.5 2.2 22 55-76 9-30 (39)
136 PRK12419 riboflavin synthase s 20.1 2E+02 0.0043 18.4 3.4 35 57-91 22-56 (158)
137 COG1735 Php Predicted metal-de 20.0 1E+02 0.0022 22.1 2.2 48 52-102 108-158 (316)
No 1
>KOG0100|consensus
Probab=100.00 E-value=9.3e-33 Score=193.40 Aligned_cols=102 Identities=70% Similarity=1.063 Sum_probs=98.3
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEc-CceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYK-GEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.|||++.|||||+.|+|+.++...++|||+++..++.|.+++... |+.+.|+|||+++|+|.++|+.||.|+|.++
T Consensus 93 ~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv 172 (663)
T KOG0100|consen 93 SNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKV 172 (663)
T ss_pred cCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 599999999999999999999999999999999999999999999987 5688999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+++|+|||||||+.|||++++|+
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDAG 195 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDAG 195 (663)
T ss_pred cceEEecchhcchHHHhhhcccc
Confidence 99999999999999999999984
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=167.26 Aligned_cols=102 Identities=72% Similarity=1.129 Sum_probs=95.5
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||+||++++|||||+.++|+.++...++|||.++. .++.+.+.+.+.++.+.++|++|++|+|++|++.|+.++|.++
T Consensus 61 ~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v 140 (653)
T PTZ00009 61 RNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQV 140 (653)
T ss_pred hCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 589999999999999999999999988999999865 5677888888888778999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999999999996
No 3
>KOG0103|consensus
Probab=99.93 E-value=1e-25 Score=164.76 Aligned_cols=102 Identities=51% Similarity=0.754 Sum_probs=98.5
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+|++||+.++|||+|++|+||.++...+++|+.++. .+|.+++.+.+.|+.+.|||++|+||+|.+|++.|++.+..++
T Consensus 58 ~n~kntv~~~KRl~Gr~f~dP~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v 137 (727)
T KOG0103|consen 58 TNVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPV 137 (727)
T ss_pred ecccccchhhhhhhccccCChHhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCC
Confidence 689999999999999999999999999999999876 6899999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.+|||+||+||++.||+++++||
T Consensus 138 ~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 138 SDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred CCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999997
No 4
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.92 E-value=1.6e-24 Score=161.74 Aligned_cols=98 Identities=55% Similarity=0.895 Sum_probs=88.5
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++|||||+.++|+.++...+.+||+++. ++|...+.+ . .+.++|++|++|+|++|++.|+.++|.++
T Consensus 99 ~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~speel~a~iL~~lk~~ae~~lg~~v 174 (663)
T PTZ00400 99 TNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEA--Q--GKKYSPSQIGAFVLEKMKETAESYLGRKV 174 (663)
T ss_pred hCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999888999999875 455555544 3 37899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 175 ~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 175 KQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999996
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.91 E-value=7.7e-24 Score=157.75 Aligned_cols=99 Identities=56% Similarity=0.906 Sum_probs=87.9
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++||+||+.++|+.++...+.|||+++.. ++...+. . ++.+.++|+||++++|++||+.|+.++|.++
T Consensus 84 ~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~--~-~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v 160 (657)
T PTZ00186 84 TNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ--D-GNGKQYSPSQIGAFVLEKMKETAENFLGHKV 160 (657)
T ss_pred hCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEE--e-CCCeEEcHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 5899999999999999999999999989999998753 4444333 2 2347899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||+||++.||+++++||
T Consensus 161 ~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 99999999999999999999986
No 6
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.90 E-value=1.4e-23 Score=154.54 Aligned_cols=102 Identities=54% Similarity=0.951 Sum_probs=93.1
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||+++++++|||||+.++++.++...+.+||+++.+ +|.+.+.+.+.|....++|+++++|+|++|++.|+.++|.++
T Consensus 56 ~~~~~~~~~~k~liG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~ 135 (602)
T PF00012_consen 56 RNPKNTIYNLKRLIGRKFDDPDVQKEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKV 135 (602)
T ss_dssp TSGGGEEESGGGTTTSBTTSHHHHHHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBE
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhccccc
Confidence 5899999999999999999999999989999998764 788889999888778999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa 158 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA 158 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH
T ss_pred ccceeeechhhhhhhhhcccccc
Confidence 99999999999999999999986
No 7
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.90 E-value=1.9e-23 Score=156.00 Aligned_cols=98 Identities=49% Similarity=0.849 Sum_probs=85.0
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||+||++++|||||+++++ ++...+++||++.. ++|...+.+.. ..+.++|++|++|+|++|++.|+.++|.++
T Consensus 60 ~~p~~ti~~~KRliG~~~~~--~~~~~~~~~~~v~~~~~g~~~i~~~~--~~~~~speel~a~iL~~lk~~ae~~lg~~v 135 (668)
T PRK13410 60 LNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPR--LEREFAPEELSAMILRKLADDASRYLGEPV 135 (668)
T ss_pred hCccceehHHhhhhCCCchh--hHHhhccCCeEEEECCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 58999999999999999876 55566789999865 34555555433 348899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999996
No 8
>KOG0101|consensus
Probab=99.89 E-value=1.1e-23 Score=154.17 Aligned_cols=102 Identities=73% Similarity=1.125 Sum_probs=97.0
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++||++|+.++|+.++..+++|||++.. .++.+.+.+.++++.+.++|+++.+|+|.++++.|+.++|..+
T Consensus 64 ~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v 143 (620)
T KOG0101|consen 64 RNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTV 143 (620)
T ss_pred cCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCce
Confidence 689999999999999999999999999999999874 5678899999999899999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|+|||++|++.||+++.+||
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH
Confidence 99999999999999999999985
No 9
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.89 E-value=4.7e-23 Score=153.68 Aligned_cols=96 Identities=50% Similarity=0.865 Sum_probs=83.3
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||+||++++|||||+.++|+. ...+++||+++. .++...+. ..+ ..++|+++++|+|++|++.|+.++|.++
T Consensus 60 ~~p~~ti~~~KrliG~~~~d~~--~~~~~~~~~~v~~~~~~~~~~--i~~--~~~~peei~a~iL~~lk~~ae~~lg~~v 133 (653)
T PRK13411 60 TNAENTVYSIKRFIGRRWDDTE--EERSRVPYTCVKGRDDTVNVQ--IRG--RNYTPQEISAMILQKLKQDAEAYLGEPV 133 (653)
T ss_pred hCcccchHHHHHHhCCCccchh--HHhhcCCceEEecCCCceEEE--ECC--EEECHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5899999999999999998864 456789999875 34444444 333 7899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999999996
No 10
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.88 E-value=1.3e-22 Score=151.70 Aligned_cols=98 Identities=52% Similarity=0.775 Sum_probs=84.9
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++|||||++++| ++...+.+||+++. ++|...+.+... ...++|+++++++|++|++.|+.++|.++
T Consensus 97 ~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v 172 (673)
T PLN03184 97 VNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKV 172 (673)
T ss_pred hCchhhhHHHHHhhCCCcch--hhhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 58999999999999999987 45566889999875 345555554433 36899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 173 ~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 173 TKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999986
No 11
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.88 E-value=2.1e-22 Score=149.62 Aligned_cols=96 Identities=59% Similarity=0.969 Sum_probs=84.4
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++|||||+. ++.++...+.+||+++.. +|...+ ..++ +.++|+++++|+|++|++.|+.++|.++
T Consensus 60 ~~p~~~i~~~Kr~iG~~--~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~--~~~~peel~a~iL~~lk~~ae~~~g~~v 133 (627)
T PRK00290 60 TNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWV--EIDG--KKYTPQEISAMILQKLKKDAEDYLGEKV 133 (627)
T ss_pred hCchhhHHHHHHHhCCC--chHHHHHhhcCCeEEEEcCCCceEE--EECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 58999999999999999 566788888999998864 444444 3443 7899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999986
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.88 E-value=3.3e-22 Score=147.85 Aligned_cols=96 Identities=56% Similarity=0.983 Sum_probs=84.2
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||.||++++|||||+.+++ ++...+.+||++..++|...+.+ + .+.++|+++++++|++|++.|+.++|.++.
T Consensus 58 ~~p~~~i~~~Kr~iG~~~~~--~~~~~~~~~~~v~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~ 131 (595)
T TIGR02350 58 TNPENTIYSIKRFMGRRFDE--VTEEAKRVPYKVVGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKVT 131 (595)
T ss_pred hCchhhhHHHHHHhCCCchH--HHHHhhcCCeeEEcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 58999999999999999854 66677889999655666555554 3 378999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 81 EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~~Aa 102 (102)
++|||||++|++.||+++++||
T Consensus 132 ~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 132 EAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred eEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999999986
No 13
>KOG0102|consensus
Probab=99.87 E-value=1.8e-22 Score=144.95 Aligned_cols=98 Identities=58% Similarity=0.981 Sum_probs=90.4
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
.||.||++.-|||||+.|+|++++.+++..||+++. .||..+++. .| ..++|.++.+|+|.++++.|++++|..+
T Consensus 85 ~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~kmk~tae~yl~~~v 160 (640)
T KOG0102|consen 85 TNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLMKMKETAEAYLGKKV 160 (640)
T ss_pred cCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHHHHHHHHHHHcCchh
Confidence 489999999999999999999999999999999886 566666665 44 9999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|+|||||||+.||+++++|.
T Consensus 161 ~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999999984
No 14
>KOG0104|consensus
Probab=99.87 E-value=7.1e-22 Score=145.84 Aligned_cols=101 Identities=28% Similarity=0.503 Sum_probs=93.1
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCce-eeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFT-VVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
|+|.+++.+++.|||++.+++.++.+.+++|+- ++.++.+.++.+..++ ...|++|||+||+|.+.++.||.+...+|
T Consensus 80 r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~I 158 (902)
T KOG0104|consen 80 RFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPI 158 (902)
T ss_pred cCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcch
Confidence 689999999999999999999999999998865 6666677778887765 68999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+++|||||.||++.||+++.+||
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa 181 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA 181 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH
Confidence 99999999999999999999997
No 15
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.86 E-value=1.1e-21 Score=145.23 Aligned_cols=95 Identities=45% Similarity=0.698 Sum_probs=81.2
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||+||++++|||||+.++|.. . .+.+||+++.. +|...+.+ .+ ..++|+|+++++|++|++.|+.++|.++
T Consensus 57 ~~p~~ti~~~Kr~iG~~~~d~~--~-~~~~~~~~~~~~~~~~~~~~--~~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v 129 (599)
T TIGR01991 57 EDPKNTISSVKRLMGRSIEDIK--T-FSILPYRFVDGPGEMVRLRT--VQ--GTVTPVEVSAEILKKLKQRAEESLGGDL 129 (599)
T ss_pred hChhhhHHHHHHHhCCCccchh--h-cccCCEEEEEcCCCceEEEe--CC--CEEcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4899999999999999988743 2 56789998653 45544443 32 3789999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 130 ~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 130 VGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999986
No 16
>CHL00094 dnaK heat shock protein 70
Probab=99.86 E-value=2.6e-21 Score=143.76 Aligned_cols=98 Identities=57% Similarity=0.847 Sum_probs=84.4
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeC-CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSD-GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++|||||+.+++ +....+.+||+++.+ +|...+.+... ...++|+++++++|++|++.|+.++|.++
T Consensus 60 ~~p~~ti~~~KrliG~~~~~--~~~~~~~~~~~v~~~~~g~i~~~~~~~--~~~~s~eei~a~iL~~l~~~ae~~lg~~v 135 (621)
T CHL00094 60 INPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPAL--NKDFSPEEISAQVLRKLVEDASKYLGETV 135 (621)
T ss_pred hCccceehhhHHhcCCChHH--HHhhhhcCCeEEEECCCCCEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 48999999999999999876 555667799998753 46555554433 37899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 136 ~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 136 TQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999986
No 17
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.85 E-value=3.7e-21 Score=142.83 Aligned_cols=96 Identities=47% Similarity=0.749 Sum_probs=82.6
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++|||||+.++| ++.....+||.+.. ++|.+.+.+. + ..++|+|+++++|++|++.|+.++|.++
T Consensus 76 ~~p~~ti~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v 149 (616)
T PRK05183 76 QDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQRAEETLGGEL 149 (616)
T ss_pred hCchhhHHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 48999999999999999887 44445778998765 3566655542 2 4789999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 150 ~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 150 DGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999986
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.78 E-value=6.8e-19 Score=130.33 Aligned_cols=94 Identities=23% Similarity=0.321 Sum_probs=69.9
Q ss_pred ccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEE
Q psy3998 6 TVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVIT 85 (102)
Q Consensus 6 ti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~Vit 85 (102)
|++++|||||+.+++................. +...+.+... .+.++|+|+++++|++|++.|+.++|.++.++|||
T Consensus 71 ti~~~KrliG~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVIT 147 (595)
T PRK01433 71 GLRSIKRLFGKTLKEILNTPALFSLVKDYLDV-NSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVIT 147 (595)
T ss_pred hHHHHHHHhCCCchhhccchhhHhhhhheeec-CCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 78999999999987622111000001111111 2223344443 37899999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHhC
Q psy3998 86 VPAYFNDSQRQATKDAG 102 (102)
Q Consensus 86 VP~~f~~~qr~~~~~Aa 102 (102)
||++|++.||+++++||
T Consensus 148 VPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 148 VPAHFNDAARGEVMLAA 164 (595)
T ss_pred ECCCCCHHHHHHHHHHH
Confidence 99999999999999996
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2e-18 Score=127.42 Aligned_cols=80 Identities=66% Similarity=0.960 Sum_probs=69.5
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||.||++.+||++|+. +....+.+...+ +.++|+++++|+|.+||+.|+.++|.+++
T Consensus 64 ~~p~~t~~~~kr~~G~~--------------------~~~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~ 121 (579)
T COG0443 64 DNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVT 121 (579)
T ss_pred hCCcceEEEEehhcCCC--------------------CCCCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 58999999999999997 111223344433 89999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 81 EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~~Aa 102 (102)
++|||||+||++.||+++++||
T Consensus 122 ~~VItVPayF~d~qR~at~~A~ 143 (579)
T COG0443 122 DAVITVPAYFNDAQRQATKDAA 143 (579)
T ss_pred eEEEEeCCCCCHHHHHHHHHHH
Confidence 9999999999999999999986
No 20
>PRK11678 putative chaperone; Provisional
Probab=99.39 E-value=1.2e-12 Score=94.54 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=43.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC-----HHHHHH---HHHhC
Q psy3998 55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN-----DSQRQA---TKDAG 102 (102)
Q Consensus 55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~-----~~qr~~---~~~Aa 102 (102)
.+|++++++|++||+.|+.++|.++.++|||||++|+ +.||++ +++||
T Consensus 125 ~~e~l~a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa 180 (450)
T PRK11678 125 LFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAA 180 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999 889877 46765
No 21
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.84 E-value=5.1e-09 Score=70.32 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=46.0
Q ss_pred eeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 52 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
..+.--+.++++|+++++.++.++|.++.++|||||++|++.||+++.+|+
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~ 84 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVI 84 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHH
Confidence 345566789999999999999999999999999999999999999999874
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.38 E-value=8.4e-07 Score=62.17 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCccC--cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 56 PEEISSMVLTKMREIAEVYLGGKVS--EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 56 ~~ev~~~il~~l~~~ae~~~~~~~~--~~VitVP~~f~~~qr~~~~~Aa 102 (102)
--++++++|++++..++..+|..+. ++|||||++|+..||+++.+|+
T Consensus 73 d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~ 121 (335)
T PRK13929 73 DYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAV 121 (335)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999888887664 7999999999999999999874
No 23
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.71 E-value=0.0001 Score=50.26 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=42.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.--+.+...|+++++.+++++|.++..++++||++|+..||.++.+|+
T Consensus 64 ~di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~ 111 (267)
T PRK15080 64 VDFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVV 111 (267)
T ss_pred eeHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHH
Confidence 336778889999999999999999999999999999999999888763
No 24
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.58 E-value=0.00017 Score=50.48 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=36.6
Q ss_pred echhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 54 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 54 ~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+...+++..+|+++.+.+....+.....+|||||++|++.||+++++|+
T Consensus 70 i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 70 IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3455677888888886654332233347999999999999999999875
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=97.31 E-value=0.00067 Score=47.30 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 58 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 58 ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+.+..+++++.+......+.....+|+|+|++|+..||+++.+|+
T Consensus 79 ~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 79 EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 457777777776665544445688999999999999999998864
No 26
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=97.16 E-value=0.0011 Score=46.47 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 60 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 60 ~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+..++.++........+..-..+|+|||++|+..||+++.+|+
T Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 79 TEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred HHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3444555544333222222238999999999999999998874
No 27
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=97.06 E-value=0.0017 Score=45.38 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 60 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 60 ~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+..++.++......... .-..+|+|+|++|++.||+++++|+
T Consensus 78 ~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~ 119 (334)
T PRK13927 78 TEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESA 119 (334)
T ss_pred HHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 44555555544433222 2248999999999999999998874
No 28
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=95.61 E-value=0.024 Score=40.02 Aligned_cols=46 Identities=24% Similarity=0.125 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
-+++..+|+++.+.+.......--.++++||+.-|+.+|+++.+|+
T Consensus 71 ~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~ 116 (326)
T PF06723_consen 71 YEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA 116 (326)
T ss_dssp HHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3567777888777776532223457999999999999999999884
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=93.05 E-value=0.25 Score=35.01 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHhC-CccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 57 EEISSMVLTKMREIAEVYLG-GKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~-~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
-+++..+|+++.+.+....+ ...-.+++.||..-++.+|+|+++||
T Consensus 78 ~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~ 124 (342)
T COG1077 78 FEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA 124 (342)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH
Confidence 35667778888777764433 23346999999999999999999985
No 30
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=89.27 E-value=1.2 Score=23.57 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=24.9
Q ss_pred HHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 68 REIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 68 ~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.+..+++...+ ...++.|+.+|..+|..+-+.|
T Consensus 5 ~~~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a 37 (59)
T cd06007 5 NKALEDFRASD--NEEYEFPSSLTNHERAVIHRLC 37 (59)
T ss_pred HHHHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHH
Confidence 34455666555 7889999999999999887643
No 31
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=84.05 E-value=3.9 Score=21.71 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 67 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 67 l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+.+..+++.... ....++.|+.++..+|..+-+.|
T Consensus 4 ~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a 38 (60)
T cd02640 4 YRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIA 38 (60)
T ss_pred HHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHH
Confidence 455556666544 56788999999999999887643
No 32
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=82.41 E-value=3.8 Score=26.30 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=29.8
Q ss_pred eechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCC
Q psy3998 53 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYF 90 (102)
Q Consensus 53 ~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f 90 (102)
..-++ -++..++.+.+.+|+.+|.+++++++++|...
T Consensus 42 I~d~~-~~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~ 78 (187)
T smart00842 42 IVDIE-AAARAIREAVEEAERMAGVKIDSVYVGISGRH 78 (187)
T ss_pred EECHH-HHHHHHHHHHHHHHHHhCCcccEEEEEEcCCc
Confidence 33444 45888899999999999999999999998653
No 33
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=81.03 E-value=3.5 Score=22.29 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=33.8
Q ss_pred cccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEE-cCceeeechhhhHHHHHH
Q psy3998 7 VFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEY-KGEIKKFAPEEISSMVLT 65 (102)
Q Consensus 7 i~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~~ev~~~il~ 65 (102)
...+++++|..++..++....++..|.+.. +++...+.+.. .. -...+++|+-.+++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~--Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRF--DIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTST--T-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcC--CcCcccHHHHHHHH
Confidence 456789999999998999999999999876 33333333322 11 23366666666553
No 34
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=76.93 E-value=9.2 Score=20.35 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=25.0
Q ss_pred cccchhhcCCCCCCHHHHHhhhcCCceeee
Q psy3998 7 VFDAKRLIGRKFEDQKIQEDIKHWPFTVVS 36 (102)
Q Consensus 7 i~~~KrllG~~~~~~~v~~~~~~~~~~~~~ 36 (102)
...+.+++|..++..++.....+..+.+..
T Consensus 8 ~~~i~~llG~~i~~~ei~~~L~~lg~~~~~ 37 (71)
T smart00874 8 RERINRLLGLDLSAEEIEEILKRLGFEVEV 37 (71)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCeEEe
Confidence 456789999999988898888998888754
No 35
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=75.86 E-value=9.3 Score=20.14 Aligned_cols=35 Identities=6% Similarity=0.305 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 67 MREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 67 l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+.+....+...+ ....++.|+.+|..||..+-+-|
T Consensus 4 ~~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA 38 (60)
T cd02641 4 LKAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELA 38 (60)
T ss_pred HHHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHH
Confidence 444455555443 33678999999999999887643
No 36
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=73.57 E-value=8.6 Score=19.99 Aligned_cols=34 Identities=12% Similarity=0.335 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 65 TKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 65 ~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
..+++..+.+.... .-.++.|+ ++..+|..+-+-
T Consensus 2 ~~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~l 35 (58)
T cd02646 2 EDIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKL 35 (58)
T ss_pred hHHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHH
Confidence 34566666666544 45668899 899999888654
No 37
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=72.39 E-value=6 Score=24.84 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHH
Q psy3998 80 SEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~ 100 (102)
+.+||++|+.|++.|-+++++
T Consensus 81 ~~vVi~v~~~i~~~~leaTL~ 101 (145)
T PF10726_consen 81 DQVVIAVPPDITPEALEATLE 101 (145)
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 459999999999999988864
No 38
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=69.67 E-value=11 Score=26.79 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=29.9
Q ss_pred eeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCC
Q psy3998 52 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAY 89 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~ 89 (102)
....++. ++..++.+.+.+|+.+|.+++++++++|..
T Consensus 42 ~I~d~~~-~~~~i~~al~~~e~~~~~~i~~v~~~v~g~ 78 (371)
T TIGR01174 42 VINDIEA-AVGSIQRAIEAAELMAGCEIRSVIVSISGA 78 (371)
T ss_pred EEEcHHH-HHHHHHHHHHHHHHHhCCcccEEEEEEccc
Confidence 4445554 588899999999999999999999999863
No 39
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=60.92 E-value=11 Score=19.92 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=16.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHH
Q psy3998 80 SEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~ 100 (102)
..-.++.|+.++..||+.+-.
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~ 36 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHL 36 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHH
Confidence 356677899999999998754
No 40
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=60.38 E-value=21 Score=26.07 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAY 89 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~ 89 (102)
.+-++.-++++.+.||...|.+++++++++|..
T Consensus 54 ~~~~~~aI~~av~~ae~~~g~~i~~v~v~i~g~ 86 (420)
T PRK09472 54 LESVVKCVQRAIDQAELMADCQISSVYLALSGK 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccEEEEEecCc
Confidence 456677888999999999999999999999965
No 41
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=59.45 E-value=36 Score=20.34 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=32.8
Q ss_pred eeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 35 VSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
+...|...+++....... +....+...|.+.-...=+..-.-+.++||+.-+-..-..++++
T Consensus 47 v~~sGnsTiRv~~~~~~~-----~~~~~v~~~l~~lG~~~E~~~~~~lav~VP~~~~~~~i~~~L~~ 108 (117)
T PF14085_consen 47 VESSGNSTIRVIFDDPGP-----DDIEAVREELEALGCTVEGFSERMLAVDVPPSVDFDAIKDYLDR 108 (117)
T ss_pred EecCCCEEEEEEEcCCcc-----hhHHHHHHHHHHcCCeEEccCCCEEEEEECCCCCHHHHHHHHHh
Confidence 344566666666543222 23344444443322111112236799999999887776666553
No 42
>PLN03220 uncharacterized protein; Provisional
Probab=57.01 E-value=18 Score=21.50 Aligned_cols=41 Identities=12% Similarity=-0.012 Sum_probs=31.2
Q ss_pred eechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHH
Q psy3998 53 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDS 93 (102)
Q Consensus 53 ~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~ 93 (102)
.+...-+-.-+|..|.+.||+.+|-.-.+-.|++|..-...
T Consensus 56 VVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F 96 (105)
T PLN03220 56 VVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVF 96 (105)
T ss_pred EEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHH
Confidence 34566666788999999999999987556779999864433
No 43
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=55.81 E-value=37 Score=19.87 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=30.7
Q ss_pred eechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHH
Q psy3998 53 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDS 93 (102)
Q Consensus 53 ~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~ 93 (102)
.+.+.-+..-+|..|.+.|++..|.+. +-.|++|..-...
T Consensus 53 vvp~~~L~hp~f~~LL~~aeeEfG~~~-~G~l~iPC~~~~F 92 (100)
T PF02519_consen 53 VVPVSYLNHPLFQELLEQAEEEFGFDQ-DGPLTIPCDVVLF 92 (100)
T ss_pred EechHHcCchhHHHHHHHHhhhcCcCC-CCcEEeeCCHHHH
Confidence 456677777899999999999888875 6668999864433
No 44
>PLN03090 auxin-responsive family protein; Provisional
Probab=52.96 E-value=47 Score=19.72 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=29.0
Q ss_pred eechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 53 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 53 ~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
.+...-+..-+|..|.+.|++.+|.+... .|++|..-.
T Consensus 57 vVp~~~L~hP~F~~LL~~aeeEfGf~~~G-~L~IPC~~~ 94 (104)
T PLN03090 57 IVPISFLTHPEFQSLLQQAEEEFGFDHDM-GLTIPCEEV 94 (104)
T ss_pred EEEHHHcCCHHHHHHHHHHHHHhCCCCCC-cEEEeCCHH
Confidence 45666677788999999999888876544 699998543
No 45
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=50.68 E-value=49 Score=27.37 Aligned_cols=67 Identities=13% Similarity=0.326 Sum_probs=44.1
Q ss_pred eeCCCCceEEE-EEcC----ceeeechhhhHHHHHHHHHHHHHHHhCC--------------ccCcEEEEeCCCCCHHHH
Q psy3998 35 VSDGGKPKIQV-EYKG----EIKKFAPEEISSMVLTKMREIAEVYLGG--------------KVSEAVITVPAYFNDSQR 95 (102)
Q Consensus 35 ~~~~~~~~~~~-~~~~----~~~~~s~~ev~~~il~~l~~~ae~~~~~--------------~~~~~VitVP~~f~~~qr 95 (102)
+.+.|.+.+.+ .... -...||--.+.+++|..+...|--+.+. .++.+++|+|+.-.-.+|
T Consensus 393 iN~~G~~L~~l~~~~~r~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er 472 (1002)
T PF07520_consen 393 INDDGQPLYQLDPEDERLPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPER 472 (1002)
T ss_pred hcccCcchhhhcCccccCccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHH
Confidence 44556665555 1111 1245666777777777777666555432 366799999999999999
Q ss_pred HHHHHh
Q psy3998 96 QATKDA 101 (102)
Q Consensus 96 ~~~~~A 101 (102)
+..+..
T Consensus 473 ~ifr~r 478 (1002)
T PF07520_consen 473 EIFRRR 478 (1002)
T ss_pred HHHHHH
Confidence 887754
No 46
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=49.65 E-value=16 Score=20.27 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=11.3
Q ss_pred CCCCCHHHHHHHHHh
Q psy3998 87 PAYFNDSQRQATKDA 101 (102)
Q Consensus 87 P~~f~~~qr~~~~~A 101 (102)
-++||+.||..++++
T Consensus 42 ApFWs~sQ~~FL~E~ 56 (74)
T PF10982_consen 42 APFWSPSQAAFLREA 56 (74)
T ss_dssp -TTS-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 478999999998875
No 47
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=48.77 E-value=40 Score=24.97 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=31.9
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCH
Q psy3998 55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFND 92 (102)
Q Consensus 55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~ 92 (102)
.=.+.++.-++..++.||...|-++++++++++..+..
T Consensus 50 ~di~~~~~sI~~av~~AE~mag~~i~~v~vs~sG~~i~ 87 (418)
T COG0849 50 VDLDAAAQSIKKAVEAAERMAGCEIKSVIVSLSGNHIK 87 (418)
T ss_pred EcHHHHHHHHHHHHHHHHHhcCCCcceEEEEeccceeE
Confidence 33456778889999999999999999999999986543
No 48
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=47.77 E-value=35 Score=21.70 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=34.1
Q ss_pred eEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 42 ~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.++|.++. ..+|-++|+..++...--..-..-|.++..-.-|.=-+.++.|++...+
T Consensus 49 ~V~V~yDp--~~isy~~LL~~f~~~hdPt~~~~Qg~D~G~QYRS~If~~d~eQ~~~a~~ 105 (156)
T PRK05528 49 CVKTHFDP--RMVSITDLMGYLFEIIDPYSVNKQGNDVGEKYRTGIYSEVDDHLIEARQ 105 (156)
T ss_pred EEEEEECC--CcCCHHHHHHHHHHhCCcccccccCCCCCCCceEEEEeCCHHHHHHHHH
Confidence 46777754 7778888888888755433322223344333334444567888877654
No 49
>PLN03219 uncharacterized protein; Provisional
Probab=47.46 E-value=29 Score=20.75 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=32.0
Q ss_pred eechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHH
Q psy3998 53 KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQ 94 (102)
Q Consensus 53 ~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~q 94 (102)
.+...-+..-+|..|.+.|++.+|-.-.+-.|+||+.-...+
T Consensus 58 vVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~ 99 (108)
T PLN03219 58 VVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFL 99 (108)
T ss_pred EEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHH
Confidence 456677777899999999999999865456799998654443
No 50
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=47.23 E-value=57 Score=23.09 Aligned_cols=42 Identities=12% Similarity=-0.037 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCC--ccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 57 EEISSMVLTKMREIAEVYLGG--KVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~--~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
-+....++.++... .++. .-..+++|.|...+..+|+.+.+.
T Consensus 74 ~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~ 117 (373)
T smart00268 74 WDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEI 117 (373)
T ss_pred HHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHH
Confidence 44555666666543 2332 235799999999999999988664
No 51
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=45.48 E-value=30 Score=22.33 Aligned_cols=57 Identities=9% Similarity=0.163 Sum_probs=34.3
Q ss_pred eEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 42 ~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.++|.++. ..+|-++|+..++...-......-|.++..-.-|.=-+.++.|++...+
T Consensus 56 ~V~V~yDp--~~isy~~Ll~~f~~~hDPt~~~~Qg~D~G~qYRS~If~~~~~q~~~a~~ 112 (172)
T PRK14054 56 AVEITYDP--AVISYRELLELFFQIHDPTTLNRQGNDRGTQYRSAIFYHDEEQKEIAEA 112 (172)
T ss_pred EEEEEECC--CcCCHHHHHHHHHHhCCCCccCCCCCCCCcCceeEEEeCCHHHHHHHHH
Confidence 46777754 7788888888888765433332223333333334444567888877654
No 52
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=44.50 E-value=24 Score=23.91 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhCCccCcEEEEeCCCC
Q psy3998 60 SSMVLTKMREIAEVYLGGKVSEAVITVPAYF 90 (102)
Q Consensus 60 ~~~il~~l~~~ae~~~~~~~~~~VitVP~~f 90 (102)
+..+.+.+++..|+++|.+++++.=++|+.-
T Consensus 74 aveiVrrlkd~lEk~lGi~~tha~taiPPGt 104 (277)
T COG4820 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGT 104 (277)
T ss_pred HHHHHHHHHHHHHHhhCeEeeeccccCCCCc
Confidence 3467899999999999999999888888753
No 53
>PF13079 DUF3916: Protein of unknown function (DUF3916)
Probab=44.43 E-value=45 Score=21.23 Aligned_cols=38 Identities=21% Similarity=0.510 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCccCc-------EEEEeCCCCCH
Q psy3998 55 APEEISSMVLTKMREIAEVYLGGKVSE-------AVITVPAYFND 92 (102)
Q Consensus 55 s~~ev~~~il~~l~~~ae~~~~~~~~~-------~VitVP~~f~~ 92 (102)
++-.|=..++..|.+.|+.....+..+ |+|+.|.-|+.
T Consensus 38 t~~~vkr~c~Q~LIn~a~~Li~~kp~~~~~yRV~~~I~lp~L~~S 82 (153)
T PF13079_consen 38 TPRKVKRLCIQTLINAAEHLIQAKPDDENTYRVVCLISLPDLFNS 82 (153)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCCcCcCCceEEEEEEEcchhhhc
Confidence 677788999999999999888765533 88999987764
No 54
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=44.26 E-value=67 Score=18.98 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHhCCccCcEEEEeCC
Q psy3998 59 ISSMVLTKMREIAEVYLGGKVSEAVITVPA 88 (102)
Q Consensus 59 v~~~il~~l~~~ae~~~~~~~~~~VitVP~ 88 (102)
+...+.+++++..+.+.......+++.+|.
T Consensus 52 ite~~a~~i~~~i~~~~~~~~~P~iv~IPs 81 (104)
T COG1436 52 ITEDLAEKIREEIRRIIRSSVLPAIVEIPS 81 (104)
T ss_pred EeHHHHhhhHHHHHHHhhccCccEEEEeCC
Confidence 344556666776667666667899999999
No 55
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=42.43 E-value=78 Score=22.40 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.7
Q ss_pred cCcEEEEeCCCCCHHHHHHHHH
Q psy3998 79 VSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 79 ~~~~VitVP~~f~~~qr~~~~~ 100 (102)
-..+++++|..++..+|+.+.+
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e 116 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTE 116 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHH
Confidence 4679999999999888887765
No 56
>PHA02896 A-type inclusion like protein; Provisional
Probab=41.99 E-value=40 Score=25.84 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=28.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
++++|....-.+|..++.-.+-..++..+|.||+||-
T Consensus 137 ss~~V~di~tdFLn~I~SIHsryrCK~MFIGIPmYwW 173 (616)
T PHA02896 137 VSKKISEIVTDYLRLISSVHSRFKCKCMFIGLPTYYI 173 (616)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCceEEccceeeE
Confidence 5566666666666666666667788999999999986
No 57
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=41.83 E-value=36 Score=21.42 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred eEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 42 ~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.++|.++. ..+|-++|+..+++..--.....-|.++..-.-|.=-+.++.||+...+
T Consensus 53 ~V~V~yDp--~~is~~~Ll~~f~~~hdPt~~~~Qg~d~G~qYRs~If~~~~~q~~~a~~ 109 (149)
T TIGR00401 53 AVQVTYDP--KVISYEELLDVFWEIHDPTQGNRQGNDIGTQYRSGIYYHSDEQEKAARA 109 (149)
T ss_pred EEEEEECC--CcCcHHHHHHHHHHhCCCCcCCCCCCCCCCCceEEEEeCCHHHHHHHHH
Confidence 46777754 6778888888887654433322223333333333334557788776654
No 58
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=40.96 E-value=32 Score=22.90 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=16.4
Q ss_pred CccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 77 GKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 77 ~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
...++++|+.|..++..|+..+..
T Consensus 66 ~~are~~iALP~EL~~eq~~~L~~ 89 (216)
T PF03389_consen 66 RLAREFEIALPRELTLEQNIELVR 89 (216)
T ss_dssp --EEEEEEE--TTS-HHHHHHHHH
T ss_pred eEeeeeeeeCCccCCHHHHHHHHH
Confidence 346889999999999999987754
No 59
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=39.54 E-value=51 Score=19.95 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=25.7
Q ss_pred hhhcCCceeeeC-C--CCceEEEEE--cCceeeechhhhHHHHHHHH
Q psy3998 26 DIKHWPFTVVSD-G--GKPKIQVEY--KGEIKKFAPEEISSMVLTKM 67 (102)
Q Consensus 26 ~~~~~~~~~~~~-~--~~~~~~~~~--~~~~~~~s~~ev~~~il~~l 67 (102)
.....|+.++.. . ....+++.. .++...++.+++...+...+
T Consensus 80 dliGiP~~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~ 126 (128)
T cd02426 80 DEMGVLFTLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYI 126 (128)
T ss_pred hhcCCCEEEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHh
Confidence 456789987542 2 244455554 45667788888777665443
No 60
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=39.38 E-value=47 Score=22.32 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=33.7
Q ss_pred eEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 42 ~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.++|.++. ..+|-++|+..++...--.-...-|.++..-.-|.=-+.++.||+...+
T Consensus 98 aV~V~YDp--~~ISy~~LL~~Ff~~hDPt~~n~QG~D~G~QYRS~Ify~~~eQ~~~a~~ 154 (213)
T PRK00058 98 VVRVVYDP--AVISYEQLLQVFWENHDPTQGMRQGNDVGTQYRSAIYTLTPEQLAAAEA 154 (213)
T ss_pred EEEEEECC--ccCCHHHHHHHHHHhcCCcccCCCCCCCCcCceEEEEeCCHHHHHHHHH
Confidence 36666754 6788888888887654432222223334333444445668888877654
No 61
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=39.19 E-value=75 Score=18.40 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=24.4
Q ss_pred ceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 41 PKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 41 ~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+.+.+....+.+.++..+|+..+... |+.-|+.+|..|-
T Consensus 45 ~avTFrv~~N~~n~taadVa~~a~~~-K~~Le~~tG~~Iv 83 (91)
T PF11548_consen 45 PAVTFRVRPNNKNLTAADVAKQAVDN-KNQLEKETGLKIV 83 (91)
T ss_dssp TEEEEEE---TT---HHHHHHHHHHT-HHHHHHHHSS-EE
T ss_pred ceEEEEeccCcCCCCHHHHHHHHHHh-HHHHHHhhCcEEe
Confidence 55666666667899999998887765 8888888887654
No 62
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=38.69 E-value=1.3e+02 Score=20.79 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=49.6
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-C--CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-D--GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||+.-=..|-|.+-.+.-++..+. ++..++ | +|...-.+-..| .++|..-....+++.|++-|-. ...-
T Consensus 17 HNTYL~g~Ql~~~ss~e~y~~aL~~--GcRcvElD~Wdg~~~eP~V~HG--~tlts~i~f~~v~~~I~~~AF~---~s~y 89 (254)
T cd08633 17 HNTYLSGDQLMSQSRVDMYAWVLQA--GCRCVEVDCWDGPDGEPIVHHG--YTLTSKILFKDVIETINKYAFI---KNEY 89 (254)
T ss_pred ccccccCCccCCccCHHHHHHHHHc--CCcEEEEEeecCCCCCcEEeeC--CCcccCcCHHHHHHHHHHHhcc---CCCC
Confidence 5676666666666644444444444 343332 1 232211122233 3444444555666777765543 3446
Q ss_pred cEEEEeCCCCCHHHHHHHH
Q psy3998 81 EAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~ 99 (102)
.++||.-.+.+..|...+.
T Consensus 90 PvIlslE~Hcs~~qQ~~ma 108 (254)
T cd08633 90 PVILSIENHCSVPQQKKMA 108 (254)
T ss_pred CEEEEecccCCHHHHHHHH
Confidence 7999999999988877654
No 63
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=38.62 E-value=23 Score=15.74 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=8.8
Q ss_pred CHHHHHHHHHhC
Q psy3998 91 NDSQRQATKDAG 102 (102)
Q Consensus 91 ~~~qr~~~~~Aa 102 (102)
.+.+|..++.||
T Consensus 10 ~~~~r~~lR~AA 21 (28)
T PF12434_consen 10 KEDKRAQLRQAA 21 (28)
T ss_pred hHHHHHHHHHHH
Confidence 367788888775
No 64
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=37.98 E-value=11 Score=18.35 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=9.3
Q ss_pred ccccccchhhcCCCCC
Q psy3998 4 KNTVFDAKRLIGRKFE 19 (102)
Q Consensus 4 ~nti~~~KrllG~~~~ 19 (102)
.-++.++|+|+|..-+
T Consensus 24 ~~~~~~ik~LlGv~~~ 39 (41)
T PF08127_consen 24 NTSIEYIKRLLGVLPD 39 (41)
T ss_dssp SB-HHHHHHCS-B-TT
T ss_pred CCCHHHHHHHcCCCCC
Confidence 3467888999987543
No 65
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=37.93 E-value=27 Score=21.22 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=21.9
Q ss_pred echhhhHHHHH------HHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 54 FAPEEISSMVL------TKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 54 ~s~~ev~~~il------~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.|+||+.+.+- +.||.......| ...+.=|.-.++.||+++..|+
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~~~----p~~~p~~~~LTp~qKe~~I~s~ 53 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQSVG----PGPSPDDEVLTPAQKEAMITSA 53 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-------S-TT--B--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCC----CCCCCCccccChHHHHHHHHHH
Confidence 46677777654 344444444443 2222335566788888887653
No 66
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=37.68 E-value=51 Score=18.53 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=28.4
Q ss_pred CCceeeeC-CCCceEEEEE-cCceeee---chhhhHHHHHHHHHHHHHHHh
Q psy3998 30 WPFTVVSD-GGKPKIQVEY-KGEIKKF---APEEISSMVLTKMREIAEVYL 75 (102)
Q Consensus 30 ~~~~~~~~-~~~~~~~~~~-~~~~~~~---s~~ev~~~il~~l~~~ae~~~ 75 (102)
|-+++... ++...+++.. .++...+ |+..++.-+=-|||..+....
T Consensus 20 f~~~~~~~~~~~d~F~l~~~~~gki~I~G~s~vala~Gl~~YLk~~c~~~i 70 (86)
T PF12971_consen 20 FTFELIPSSNGKDVFELSSADNGKIVIRGNSGVALASGLNWYLKYYCHVHI 70 (86)
T ss_dssp EEEEE---BTTBEEEEEEE-SSS-EEEEESSHHHHHHHHHHHHHHHS--B-
T ss_pred EEEEEecCCCCCCEEEEEeCCCCeEEEEeCCHHHHHHHHHHHHHHHhCceE
Confidence 44555443 3777888887 6555544 788888888889998876544
No 67
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=37.29 E-value=49 Score=21.71 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=33.1
Q ss_pred eEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 42 ~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.++|.++. ..+|-++|+.+++...--.-...-|.++..-.-|.=-+.++.|++...+
T Consensus 61 ~V~V~yDp--~~iSy~~LL~~Ff~~hDPt~~~~Qg~D~G~QYRS~If~~~~eQ~~~a~~ 117 (186)
T PRK13014 61 AVQITYDP--KQVSYENLLQIFFSTHDPTQLNRQGPDRGEQYRSAIFYHDEEQKKVAEA 117 (186)
T ss_pred EEEEEECC--CcCCHHHHHHHHHHhcCCCccCCCCCCCCCCceEEEEeCCHHHHHHHHH
Confidence 46777754 6788888888888654332222223333333344444567888877654
No 68
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=37.10 E-value=41 Score=26.75 Aligned_cols=55 Identities=11% Similarity=-0.029 Sum_probs=36.5
Q ss_pred cCceeeechhhhHHHHHHHHHHHHH----HHhCCcc--------------------CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 48 KGEIKKFAPEEISSMVLTKMREIAE----VYLGGKV--------------------SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 48 ~~~~~~~s~~ev~~~il~~l~~~ae----~~~~~~~--------------------~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
+|++.-.+|.|+...=|..+..+.- +..|-++ -.+.|++|..+++.||+.+.++|
T Consensus 30 GG~g~GPsP~DLllASLAaCtaitlrmYA~rkgi~LegI~V~v~~~~~~e~r~~~~~~~~I~lpgdL~eeqr~rLl~iA 108 (718)
T TIGR03549 30 KGDGSAPGPFDYFLASSALCAAYFVKVYCNARDIPTENIRLSQNNIVDPEDRYNQIFKIQVELPEDISEKDRQGILRSI 108 (718)
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcEEEEEeeccCCCCccccEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4556778998887666655554321 1112111 14668999999999999998875
No 69
>PF14628 DUF4454: Domain of unknown function (DUF4454)
Probab=36.70 E-value=31 Score=22.94 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=16.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHH
Q psy3998 80 SEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~ 100 (102)
..--|+||+..+..|-+++++
T Consensus 52 ~~GtIsvP~~iT~eQ~~~~l~ 72 (216)
T PF14628_consen 52 AEGTISVPASITPEQYEAVLK 72 (216)
T ss_pred ecceEEeeeecCHHHHHHHHh
Confidence 345699999999999998554
No 70
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=36.15 E-value=1.6e+02 Score=21.06 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=32.1
Q ss_pred EEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 43 IQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 43 ~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
-.+-+.|++..+-+.+.+..+|..+++. +.....=.+-+-|..+++..-+.++++
T Consensus 58 ~tiy~GGGTPs~L~~~~l~~ll~~i~~~----~~~~~eitiE~nP~~lt~e~l~~lk~~ 112 (353)
T PRK05904 58 KTIYLGGGTPNCLNDQLLDILLSTIKPY----VDNNCEFTIECNPELITQSQINLLKKN 112 (353)
T ss_pred EEEEECCCccccCCHHHHHHHHHHHHHh----cCCCCeEEEEeccCcCCHHHHHHHHHc
Confidence 3455566666554445556677777654 221111123334999998888887765
No 71
>KOG0855|consensus
Probab=35.88 E-value=28 Score=22.73 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=19.2
Q ss_pred hcCCCCCCHHHHH---hhhcCCceeeeC
Q psy3998 13 LIGRKFEDQKIQE---DIKHWPFTVVSD 37 (102)
Q Consensus 13 llG~~~~~~~v~~---~~~~~~~~~~~~ 37 (102)
.||.+.|+..-+. .+.++||++..+
T Consensus 127 V~GlS~D~s~sqKaF~sKqnlPYhLLSD 154 (211)
T KOG0855|consen 127 VIGLSGDDSASQKAFASKQNLPYHLLSD 154 (211)
T ss_pred EEeeccCchHHHHHhhhhccCCeeeecC
Confidence 7999999977665 356699998754
No 72
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=35.33 E-value=1.4e+02 Score=20.02 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 64 LTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 64 l~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
.+.++..++......+..+++-++...|...|+++.+.
T Consensus 79 vk~ir~~~~~~~~~n~~r~IlV~q~~ltp~Ar~~i~~~ 116 (205)
T PTZ00061 79 VKPIRELTEKMEEHDIQRAILVTQNVLTPFAKDAILEA 116 (205)
T ss_pred HHHHHHHHHHHhhcCCceEEEEECCCCCHHHHHHHHhh
Confidence 46667777766677899999999999999999998664
No 73
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=34.79 E-value=1.4e+02 Score=19.98 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 64 LTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 64 l~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
.+.++..++......+..+++-++...|...|+++.+.
T Consensus 80 vk~ir~~~~~~~~e~~~r~IlV~q~~itp~A~~~i~~~ 117 (206)
T PLN03111 80 VKTIKTYAERMKDENVSRAILVLQSKLTPFAKQALSEF 117 (206)
T ss_pred HHHHHHHHHHHhhcCcceEEEEECCCCCHHHHHHHHhh
Confidence 46667777766678899999999999999999998664
No 74
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=34.41 E-value=47 Score=20.74 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=17.2
Q ss_pred HHHHHhCCccCcEEEEeCCCCCHHH
Q psy3998 70 IAEVYLGGKVSEAVITVPAYFNDSQ 94 (102)
Q Consensus 70 ~ae~~~~~~~~~~VitVP~~f~~~q 94 (102)
.|++.+...--+++|.+|..|+..-
T Consensus 87 ea~~~l~~g~~~~~ivIP~~Fs~~l 111 (164)
T TIGR03061 87 EAEKGLADGKYYMVITIPEDFSENA 111 (164)
T ss_pred HHHHHhHcCcEEEEEEECcchhHHH
Confidence 3444444445679999999999754
No 75
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=34.22 E-value=1.4e+02 Score=20.00 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCccCcEEEEeCCCCC--HHHHHHHHH
Q psy3998 64 LTKMREIAEVYLGGKVSEAVITVPAYFN--DSQRQATKD 100 (102)
Q Consensus 64 l~~l~~~ae~~~~~~~~~~VitVP~~f~--~~qr~~~~~ 100 (102)
|-++.++.++ +..--.+||.+|..|. .+-|+++++
T Consensus 141 L~~l~elie~--~~~~palvIg~PVGFv~AaesKe~L~~ 177 (210)
T COG2082 141 LFELLELIEE--GGIKPALVIGVPVGFVGAAESKEALRE 177 (210)
T ss_pred HHHHHHHHHc--cCCCCcEEEEcCCcccchHHHHHHHHh
Confidence 5566666666 3334579999999998 445555544
No 76
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=34.18 E-value=66 Score=25.11 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=52.5
Q ss_pred CcccccccchhhcCCCCCCHHHHHhhhcCCcee---ee---CCCCceEEEEEcCcee------e--echhhhHHHHHHHH
Q psy3998 2 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTV---VS---DGGKPKIQVEYKGEIK------K--FAPEEISSMVLTKM 67 (102)
Q Consensus 2 np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~------~--~s~~ev~~~il~~l 67 (102)
||.|....-|.|-.+.|.|.+.+....+..-++ +. +.| ..++|-.+.++. . -+|+-+...-|.++
T Consensus 111 NPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~-~~iRIGvN~GSL~~~i~~~yg~tpe~mVeSAle~~ 189 (611)
T PRK02048 111 NPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENH-TAIRIGVNHGSLSDRIMSRYGDTPEGMVESCMEFL 189 (611)
T ss_pred CCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCC-CCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHH
Confidence 888887776778888898888776555443221 21 122 223333222110 1 26655555555444
Q ss_pred HHHHHHHhCCccCcEEEEeCCCCCHHHHHHHH
Q psy3998 68 REIAEVYLGGKVSEAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 68 ~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~ 99 (102)
+- .-.....++|+|+=++-...--.+.+
T Consensus 190 ~i----~e~~~f~diviS~KsS~~~~~V~AyR 217 (611)
T PRK02048 190 RI----CVEEHFTDVVISIKASNTVVMVRTVR 217 (611)
T ss_pred HH----HHHCCCCcEEEEEEeCCcHHHHHHHH
Confidence 32 22345689999999887755444444
No 77
>KOG3493|consensus
Probab=33.46 E-value=19 Score=19.60 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.9
Q ss_pred CcccccccchhhcCCC
Q psy3998 2 NPKNTVFDAKRLIGRK 17 (102)
Q Consensus 2 np~nti~~~KrllG~~ 17 (102)
||..||-++|.||..+
T Consensus 19 n~dDtiGD~KKliaaQ 34 (73)
T KOG3493|consen 19 NTDDTIGDLKKLIAAQ 34 (73)
T ss_pred CCcccccCHHHHHHHh
Confidence 7889999999998763
No 78
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=33.07 E-value=1.7e+02 Score=20.32 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=48.3
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-C--CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-D--GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||+.-=..|-|.+-.+.-+..... ++..++ | +|...-.+-..| .++|..-....+++.|++-|-. ...-
T Consensus 17 HNTYL~g~Ql~~~ss~~~y~~aL~~--GcRcvElD~wdg~~~eP~V~HG--~tlts~i~f~~v~~~I~~~AF~---~s~y 89 (258)
T cd08630 17 HNTYLTDSQIGGPSSTEAYVRAFAQ--GCRCVELDCWEGPGGEPVIYHG--HTLTSKILFRDVIQAVRQHAFT---ASPY 89 (258)
T ss_pred cCccccCCcccCcccHHHHHHHHHc--CCcEEEEEeecCCCCCcEEeeC--CccccceEHHHHHHHHHHHhcc---CCCC
Confidence 5666655666666544444444433 344322 1 232211122223 2344444455566666665543 3447
Q ss_pred cEEEEeCCCCCHHHHHHHH
Q psy3998 81 EAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~ 99 (102)
.++||.-.+.+..|...+.
T Consensus 90 PvIlslE~Hcs~~qQ~~~a 108 (258)
T cd08630 90 PVILSLENHCGLEQQAAMA 108 (258)
T ss_pred CEEEEeeccCCHHHHHHHH
Confidence 7999999999988876654
No 79
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=32.83 E-value=28 Score=21.98 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.4
Q ss_pred EEEEeCCCCCHHHHHHH
Q psy3998 82 AVITVPAYFNDSQRQAT 98 (102)
Q Consensus 82 ~VitVP~~f~~~qr~~~ 98 (102)
--|++|-.|++.|++.-
T Consensus 39 ~rIs~PqNf~eaqsRv~ 55 (169)
T COG5130 39 GRISVPQNFNEAQSRVF 55 (169)
T ss_pred ccccCCcchHHHHHHHH
Confidence 35899999999999864
No 80
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=31.45 E-value=67 Score=22.07 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=24.7
Q ss_pred ceeeechhhhHHHHHHHHHHHHHHHhCCcc------------------CcEEEEeCCC
Q psy3998 50 EIKKFAPEEISSMVLTKMREIAEVYLGGKV------------------SEAVITVPAY 89 (102)
Q Consensus 50 ~~~~~s~~ev~~~il~~l~~~ae~~~~~~~------------------~~~VitVP~~ 89 (102)
..+.+++.|+-..+|.+|.+.|++. |.++ -|+++|=|++
T Consensus 66 ~~~~I~VvDiDeRll~fI~~~a~~~-gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 66 LPKRITVVDIDERLLDFINRVAEEE-GLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp --SEEEEE-S-HHHHHHHHHHHHHH-T--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHc-CCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 3467889999999999999999876 2111 2699999986
No 81
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=31.17 E-value=1.4e+02 Score=18.71 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=36.2
Q ss_pred CCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEE-EeCCCCCHH
Q psy3998 39 GKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVI-TVPAYFNDS 93 (102)
Q Consensus 39 ~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~Vi-tVP~~f~~~ 93 (102)
..+++...-+++...+.|..++..++..+++.-++.+........+ -+|-.|.+.
T Consensus 40 ~EpWf~~De~~~~~~l~p~~~l~~Li~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dv 95 (137)
T PF10788_consen 40 NEPWFIIDENNEEYVLLPQKSLQNLIESLKNAQKENFELKLEKDILQQMPIDFEDV 95 (137)
T ss_pred CCCeEEEcCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 3456666666777788999999999999999887665433222111 136555543
No 82
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=30.68 E-value=69 Score=16.93 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=19.4
Q ss_pred ccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 78 KVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 78 ~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
.+.+..+.||+..+..|=+.+.+.
T Consensus 14 ~~~~~~~~VP~~~t~~~Ls~LvN~ 37 (65)
T PF08154_consen 14 EVPGTPISVPSNITRKELSELVNQ 37 (65)
T ss_pred cCCCCCEEEeCCCCHHHHHHHHHH
Confidence 466788999999999888877653
No 83
>PF14893 PNMA: PNMA
Probab=30.60 E-value=99 Score=22.22 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCccCc--EEEEeCCCCCHHHHHHHHHhC
Q psy3998 67 MREIAEVYLGGKVSE--AVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 67 l~~~ae~~~~~~~~~--~VitVP~~f~~~qr~~~~~Aa 102 (102)
|.+.+..-.|.+... +|..||...++...+.+++||
T Consensus 5 lL~dWCr~m~~~~~r~lLv~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 5 LLEDWCRGMGVDPQRALLVLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred HHHHHHHhcCcChhhhheeecCCCCCCHHHHHHHHHHh
Confidence 556777777777765 788899999999999998875
No 84
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=30.58 E-value=1.2e+02 Score=17.81 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=25.4
Q ss_pred echhhhHHHHHHHHHHHHHHHhCCccCcEEEEe
Q psy3998 54 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITV 86 (102)
Q Consensus 54 ~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitV 86 (102)
++.+++-..+++.+-+...+.+|++...++++|
T Consensus 9 v~~~~~~~~f~~~ls~~va~~lgKpe~~i~V~v 41 (114)
T PF01187_consen 9 VSASKVPDDFLKELSKLVAELLGKPESYIMVTV 41 (114)
T ss_dssp S-GGGSHTTHHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred CCchhchHHHHHHHHHHHHHHhCcchhhEEEEe
Confidence 345667778888999988888899888877775
No 85
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=29.89 E-value=1.9e+02 Score=20.04 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=47.5
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcE
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEA 82 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~ 82 (102)
+||+.-=..|-|.+-.+.-+...+...-+-.++ =+|...-.+-..| .++|..-....+++.|++-|- ....-.+
T Consensus 17 HNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG--~tlts~i~f~~v~~~I~~~AF---~~S~yPv 91 (258)
T cd08629 17 HNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHG--YTFTSKILFCDVLRAIRDYAF---KASPYPV 91 (258)
T ss_pred ccccccCCccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeC--CCCccCcCHHHHHHHHHHHhc---cCCCCCE
Confidence 466555555556554443344444333322121 1222111122223 344444445566666776654 3345779
Q ss_pred EEEeCCCCCHHHHHHHH
Q psy3998 83 VITVPAYFNDSQRQATK 99 (102)
Q Consensus 83 VitVP~~f~~~qr~~~~ 99 (102)
+||.-.+.+..|...+.
T Consensus 92 IlsLE~Hcs~~qQ~~ma 108 (258)
T cd08629 92 ILSLENHCSLEQQRVMA 108 (258)
T ss_pred EEEeeccCCHHHHHHHH
Confidence 99999999988877654
No 86
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=29.40 E-value=95 Score=19.66 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
++++..++....+..++.-...-.-.|++||..|-
T Consensus 24 ~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~E 58 (154)
T PRK00061 24 DFITDALLEGALDALKRHGVSEENIDVVRVPGAFE 58 (154)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHH
Confidence 45677777777777776632334557789999875
No 87
>PF11918 DUF3436: Domain of unknown function (DUF3436); InterPro: IPR024591 This uncharacterised N-terminal domain is associated with the interphotoreceptor retinol-binding protein family. It is about 50 amino acids in length and has two conserved sequence motifs: DPRL and SYEP.
Probab=29.04 E-value=82 Score=16.45 Aligned_cols=17 Identities=18% Similarity=0.538 Sum_probs=13.4
Q ss_pred eeechhhhHHHHHHHHH
Q psy3998 52 KKFAPEEISSMVLTKMR 68 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~ 68 (102)
..+++|++++++=+.++
T Consensus 36 ~~Lt~EqLla~lq~~ik 52 (55)
T PF11918_consen 36 PNLTPEQLLAMLQKSIK 52 (55)
T ss_pred CCcCHHHHHHHHHhhee
Confidence 46899999999866654
No 88
>PRK02114 formylmethanofuran--tetrahydromethanopterin formyltransferase; Provisional
Probab=28.78 E-value=25 Score=24.73 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=11.9
Q ss_pred HHhCCccCcEEEEeCC
Q psy3998 73 VYLGGKVSEAVITVPA 88 (102)
Q Consensus 73 ~~~~~~~~~~VitVP~ 88 (102)
+++...+.+||+|.|.
T Consensus 86 kql~~RigQcVLT~PT 101 (297)
T PRK02114 86 KQLLERIGQCVLTAPT 101 (297)
T ss_pred HHHHHHccCcccCCcc
Confidence 3445568889999996
No 89
>PHA03162 hypothetical protein; Provisional
Probab=28.77 E-value=1.5e+02 Score=18.42 Aligned_cols=48 Identities=6% Similarity=0.067 Sum_probs=29.1
Q ss_pred eeeechhhhHHHHHH------HHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 51 IKKFAPEEISSMVLT------KMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 51 ~~~~s~~ev~~~il~------~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
....|+||+.+.+-+ .||.......|.+ -|.=+.-.|..||+++..++
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~----~~p~d~~LTp~qKea~I~s~ 63 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDD----PLPGDPILTPAAKEAMIGAA 63 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCCccCCHHHHHHHHHHH
Confidence 456799999988753 4444444433332 11112347899999987663
No 90
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=28.32 E-value=93 Score=15.90 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=13.8
Q ss_pred EEEeCCCCCHHHHHHHHHh
Q psy3998 83 VITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 83 VitVP~~f~~~qr~~~~~A 101 (102)
-|.+....+.+||+.+.++
T Consensus 5 ~i~~~~Grs~EqK~~L~~~ 23 (60)
T PRK02289 5 RIDLFEGRSQEQKNALARE 23 (60)
T ss_pred EEEECCCCCHHHHHHHHHH
Confidence 3566667789999888764
No 91
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=28.18 E-value=1.5e+02 Score=18.49 Aligned_cols=35 Identities=29% Similarity=0.236 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
+++...++....+.....--.+-.--+++||..|.
T Consensus 15 ~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~E 49 (144)
T PF00885_consen 15 EEITDRLLEGALEELKRHGVAEENIEVIRVPGAFE 49 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHH
Confidence 34667777777776665432333568999999886
No 92
>PRK09875 putative hydrolase; Provisional
Probab=27.96 E-value=2.2e+02 Score=19.98 Aligned_cols=49 Identities=8% Similarity=0.207 Sum_probs=35.2
Q ss_pred eeeechhhhHHHHHHHHHHHHHHHhCCccCcEEE-EeCC---CCCHHHHHHHHHhC
Q psy3998 51 IKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVI-TVPA---YFNDSQRQATKDAG 102 (102)
Q Consensus 51 ~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~Vi-tVP~---~f~~~qr~~~~~Aa 102 (102)
-...++++++.++++.|.+=.. |..++.-|| -+-. .+++.++..++.||
T Consensus 93 ~~~~~~e~la~~~i~ei~~Gi~---gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa 145 (292)
T PRK09875 93 VATRSVQELAQEMVDEIEQGID---GTELKAGIIAEIGSSEGKITPLEEKVFIAAA 145 (292)
T ss_pred HhcCCHHHHHHHHHHHHHHhhc---cCCCcccEEEEEecCCCCCCHHHHHHHHHHH
Confidence 3466889999999988876554 556666666 3333 36899999888775
No 93
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.76 E-value=17 Score=24.56 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=20.5
Q ss_pred HHHHHHHHHHH----------HHHHhCCccCcEEEEeCCCCCH
Q psy3998 60 SSMVLTKMREI----------AEVYLGGKVSEAVITVPAYFND 92 (102)
Q Consensus 60 ~~~il~~l~~~----------ae~~~~~~~~~~VitVP~~f~~ 92 (102)
+-|+|++|++. |+...-...++.|+|||+-|-+
T Consensus 24 sy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~D 66 (265)
T COG5494 24 SYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFID 66 (265)
T ss_pred HHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEc
Confidence 56788998872 1111112345689999987643
No 94
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=27.52 E-value=2.2e+02 Score=19.81 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=48.1
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-C--CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-D--GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||+.-=..|-|.+-.+.-+...+. ++..++ | +|...-.+-..| .++|..-....+++.|++-|- ....-
T Consensus 17 HNTYL~g~Ql~~~ss~e~y~~aL~~--GcRcvElD~wdg~~~eP~V~HG--~tlts~i~f~~v~~~Ik~~AF---~~s~y 89 (258)
T cd08631 17 HNTYLMEDQLRGQSSVEGYIRALKR--GCRCVEVDVWDGPNGEPIVYHG--HTFTSKILFKDVVAAVAQYAF---QVSDY 89 (258)
T ss_pred CCccccCCcccCccCHHHHHHHHHc--CCcEEEEEeecCCCCCcEEeeC--CcccCCcCHHHHHHHHHHHhc---cCCCC
Confidence 4666555566666544444444433 444332 1 222111122223 234444445556666666654 33456
Q ss_pred cEEEEeCCCCCHHHHHHHH
Q psy3998 81 EAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~ 99 (102)
.++||.-.+.+..|...+.
T Consensus 90 PvIlslE~Hc~~~qQ~~ma 108 (258)
T cd08631 90 PVILSLENHCGVEQQQTMA 108 (258)
T ss_pred CEEEEeeccCCHHHHHHHH
Confidence 7999999999988877654
No 95
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=27.38 E-value=2.2e+02 Score=19.79 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=49.0
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-C--CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-D--GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||+.-=.+|-|.+-.+.-+...+. ++..++ | +|...-.+-..| .++|..-....+++.|++-|- ....-
T Consensus 17 HNTYL~g~Ql~~~ss~e~y~~aL~~--GcRcvElD~wdg~~~ep~v~HG--~tlt~~i~f~~v~~~I~~~AF---~~s~y 89 (257)
T cd08595 17 HNTYLVSDQLVGPSDLDGYVSALRK--GCRCLEIDCWDGADNEPVVYHG--YTLTSKILFKEVITTVEKYAF---EKSDY 89 (257)
T ss_pred ccccccCCcccCcccHHHHHHHHHh--CCcEEEEEeecCCCCCcEEecC--CCcccccCHHHHHHHHHHHhc---cCCCC
Confidence 4666555666665544443444443 344332 1 232211122233 344444455666777776654 33457
Q ss_pred cEEEEeCCCCCHHHHHHHH
Q psy3998 81 EAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~ 99 (102)
.++||.-.+.+..|...+.
T Consensus 90 PvIlslE~Hcs~~qQ~~~a 108 (257)
T cd08595 90 PVVLSLENHCSTEQQEIMA 108 (257)
T ss_pred CEEEEeeccCCHHHHHHHH
Confidence 7999999999988877654
No 96
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.31 E-value=1.3e+02 Score=18.01 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHhCCccCcEEEEeCC
Q psy3998 59 ISSMVLTKMREIAEVYLGGKVSEAVITVPA 88 (102)
Q Consensus 59 v~~~il~~l~~~ae~~~~~~~~~~VitVP~ 88 (102)
++..+++-+.+.|++.-...+..+++.|-.
T Consensus 6 i~~~il~~v~~~a~~~~~~~V~~V~l~IG~ 35 (117)
T PRK00564 6 VVSSLIALCEEHAKKNQAHKIEKVVVGIGE 35 (117)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEEEcc
Confidence 566778888888888777789999888865
No 97
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=27.02 E-value=1.5e+02 Score=18.55 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhCCccCcEEEEeC---CCCCHHHHHHH
Q psy3998 60 SSMVLTKMREIAEVYLGGKVSEAVITVP---AYFNDSQRQAT 98 (102)
Q Consensus 60 ~~~il~~l~~~ae~~~~~~~~~~VitVP---~~f~~~qr~~~ 98 (102)
.-..||.+.+.+.++++.+-...|++.- .+|+..-++.+
T Consensus 98 vN~~lK~ILn~W~~fL~sp~S~~vL~~~~~~GWfs~~A~~~l 139 (141)
T PF12588_consen 98 VNAQLKKILNEWGEFLSSPASRSVLNTDPPNGWFSPEALKEL 139 (141)
T ss_pred HHHHHHHHHHHHHHHcCChhhhccccCCCCCCccCHHHHHHh
Confidence 5667999999999999988777788766 78998777665
No 98
>PRK13669 hypothetical protein; Provisional
Probab=26.76 E-value=65 Score=18.08 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.6
Q ss_pred eechhhhHHHHHHHHHH
Q psy3998 53 KFAPEEISSMVLTKMRE 69 (102)
Q Consensus 53 ~~s~~ev~~~il~~l~~ 69 (102)
--||+|++..|.++|.+
T Consensus 58 a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 58 GETPEELVENIYAHLEE 74 (78)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 35999999999999876
No 99
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=26.70 E-value=1e+02 Score=20.73 Aligned_cols=58 Identities=24% Similarity=0.264 Sum_probs=33.5
Q ss_pred ccccccchhhcCCCCCCHHHHHh--hhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHH
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQED--IKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIA 71 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~a 71 (102)
.+|.+-.|+|+|+.++|.....- ..++||.=.. .... ...-++-..++.+.+...+.|
T Consensus 156 GsT~~vAk~l~G~~~~d~~~~~g~~~q~YPC~As~-------~~d~---~~~d~~~h~Ag~i~~~Ave~A 215 (217)
T PF02593_consen 156 GSTWFVAKRLIGKEVEDAPEKAGLAHQHYPCRASM-------GRDF---ELGDTILHKAGYIHKEAVEKA 215 (217)
T ss_pred ccHHHHHHHhcCCccchhhhhhhhhheeccccccc-------cccc---ccccchhhhhHHHHHHHHHHh
Confidence 56888899999999999766652 2345554111 0000 011244556777776655544
No 100
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=26.68 E-value=20 Score=17.29 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=10.0
Q ss_pred chhhhHHHHHHHH
Q psy3998 55 APEEISSMVLTKM 67 (102)
Q Consensus 55 s~~ev~~~il~~l 67 (102)
=|.|+...||.++
T Consensus 4 LP~Eil~~If~~L 16 (47)
T PF12937_consen 4 LPDEILLEIFSYL 16 (47)
T ss_dssp S-HHHHHHHHTTS
T ss_pred hHHHHHHHHHhcC
Confidence 3789999999876
No 101
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=26.68 E-value=2.1e+02 Score=19.45 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=46.4
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcE
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEA 82 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~ 82 (102)
+||+.-=..|-|.+-.+.-+.......-+-.++ =+|..+-.+-+.| .++|..-....+++.|++-|- ....-.+
T Consensus 17 HNTYL~g~Ql~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG--~tlts~i~f~dv~~aI~~~AF---~~s~yPv 91 (227)
T cd08594 17 HNTYLTGDQLLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHG--YTLTSKILFRDVIETINKYAF---IKNEYPV 91 (227)
T ss_pred cCccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeC--CCcccCcCHHHHHHHHHHhhc---cCCCCCE
Confidence 466555555556554433333343333222121 1232211122233 233333345555666665544 3345779
Q ss_pred EEEeCCCCCHHHHHHHH
Q psy3998 83 VITVPAYFNDSQRQATK 99 (102)
Q Consensus 83 VitVP~~f~~~qr~~~~ 99 (102)
+||.-.+.+..|...+.
T Consensus 92 IlSlE~Hcs~~qQ~~ma 108 (227)
T cd08594 92 ILSIENHCSVQQQKKMA 108 (227)
T ss_pred EEEecccCCHHHHHHHH
Confidence 99999999988877654
No 102
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.14 E-value=57 Score=21.22 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=32.4
Q ss_pred eEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 42 ~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.++|.++. ..+|-++|+..+++-+--.--..-|.++..-.-|.=-+.++.|++...+
T Consensus 59 ~V~V~yDp--~~isy~~LL~~ff~ihDPT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~ 115 (174)
T COG0225 59 AVEVTYDP--KVISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEA 115 (174)
T ss_pred EEEEEeCC--ccccHHHHHHHHheecCCCCCCccCCcccccceeEEEEcCHHHHHHHHH
Confidence 46666754 7778888777777554333222234444444444445567777776554
No 103
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=25.87 E-value=94 Score=18.39 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHhCCccCcEEEEeCC
Q psy3998 59 ISSMVLTKMREIAEVYLGGKVSEAVITVPA 88 (102)
Q Consensus 59 v~~~il~~l~~~ae~~~~~~~~~~VitVP~ 88 (102)
++..++..+.+.|++.-..+++.+++.|-.
T Consensus 6 i~~~iv~~v~~~a~~~~~~kV~~V~l~iG~ 35 (113)
T PF01155_consen 6 IAQSIVEIVEEEAEENGAKKVTKVRLEIGE 35 (113)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEEECC
Confidence 567788888888887777788888888754
No 104
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=25.72 E-value=1.9e+02 Score=18.46 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccC-cEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVS-EAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~-~~VitVP~~f~ 91 (102)
.++...+|+-.++.++. .|.... =-|++||..|-
T Consensus 24 ~~I~d~ll~gA~~~l~~-~G~~~~~i~vv~VPGa~E 58 (152)
T COG0054 24 DDITDALLEGAVDALKR-HGADVDNIDVVRVPGAFE 58 (152)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCcccceEEEeCCcch
Confidence 45777888888888877 565544 36999999987
No 105
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=25.46 E-value=1e+02 Score=21.69 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=31.2
Q ss_pred eEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 42 ~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.++|.++. ..+|-++|+..++...-...-..-|.+...-.-|.=-+.++.|+....+
T Consensus 180 aV~V~yDp--~~isy~~LL~~F~~~hDPt~~~~Qg~D~G~QYRS~If~~d~eq~~~A~~ 236 (283)
T PRK05550 180 AVRVEFDP--AKISYETLLKVFFEIHDPTQLNRQGPDIGTQYRSAIFYHDDEQKQIAEK 236 (283)
T ss_pred EEEEEECC--ccCCHHHHHHHHHhhcCCCccCCCCCCCCcCceEEEEeCCHHHHHHHHH
Confidence 46677754 6677788888877654332222222233322333334557788776654
No 106
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=25.23 E-value=2e+02 Score=20.40 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=26.3
Q ss_pred cccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCc
Q psy3998 7 VFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKP 41 (102)
Q Consensus 7 i~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~ 41 (102)
+.+-.+.+|.-|+..+.+......++.+.+++|+.
T Consensus 122 f~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~ 156 (310)
T TIGR00746 122 FQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRG 156 (310)
T ss_pred ccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCc
Confidence 56677889999998888777777777666666554
No 107
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=25.20 E-value=82 Score=17.20 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=12.7
Q ss_pred cCcEEEEeCCCCCHHHHH
Q psy3998 79 VSEAVITVPAYFNDSQRQ 96 (102)
Q Consensus 79 ~~~~VitVP~~f~~~qr~ 96 (102)
+-...|.+|..+|..||+
T Consensus 63 ~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 63 IVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEE--SSTSHHHHH
T ss_pred EEEEEEECCCCCCHHHhc
Confidence 445778889999999986
No 108
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=25.19 E-value=1.5e+02 Score=20.99 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=17.1
Q ss_pred ccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 78 KVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 78 ~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.-..++++.|...+..+|+.+.+
T Consensus 93 ~~~~vll~~~~~~~~~~r~~l~e 115 (393)
T PF00022_consen 93 SDHPVLLTEPPFNPRSQREKLAE 115 (393)
T ss_dssp GGSEEEEEESTT--HHHHHHHHH
T ss_pred ccceeeeeccccCCchhhhhhhh
Confidence 34569999999999999987754
No 109
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.13 E-value=1.7e+02 Score=19.82 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=37.9
Q ss_pred CceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhC---CccC-cEEEE---eCCCCCHHHHHHHHH
Q psy3998 40 KPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLG---GKVS-EAVIT---VPAYFNDSQRQATKD 100 (102)
Q Consensus 40 ~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~---~~~~-~~Vit---VP~~f~~~qr~~~~~ 100 (102)
..++.+..+|.......+++....-...++++.+|.= .++. .+|=. +|+.|++.|+..+.+
T Consensus 87 ~~G~~~~v~G~~~~ip~d~L~~Lg~g~~~Qi~~rFG~V~hlPvev~~v~~~~~~~~rltd~q~d~l~~ 154 (225)
T PF09883_consen 87 EDGYGVDVDGIFVPIPKDELKPLGPGSPRQIRRRFGLVQHLPVEVEFVKVEDGIEARLTDEQVDRLYE 154 (225)
T ss_pred ccceEEEeecccccCcHHHhcccCCCCHHHHHHHhCcccCCceEEEEEEcccCcccccCHHHHHHHHH
Confidence 3444454444445566677767767888888888732 2321 12222 699999999987653
No 110
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=25.05 E-value=63 Score=18.28 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 63 VLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 63 il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
+..++.+...++.......+|+.+|....
T Consensus 52 ~~~~~~~~l~~~~~~~~~P~iv~IP~~~~ 80 (95)
T PF01990_consen 52 LAEKIRDELDEYREESSLPLIVEIPSKEG 80 (95)
T ss_dssp HHTTHHHHHHHHHHTSSSSEEEEESTTCC
T ss_pred HHHHHHHHHHHHHhccCCceEEEcCCCCC
Confidence 34455555555555557889999999765
No 111
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=24.97 E-value=1.8e+02 Score=17.92 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhCC---ccCcEEEEeCCC
Q psy3998 56 PEEISSMVLTKMREIAEVYLGG---KVSEAVITVPAY 89 (102)
Q Consensus 56 ~~ev~~~il~~l~~~ae~~~~~---~~~~~VitVP~~ 89 (102)
-.+....++..|++.|+++.|. -..+.||-.|..
T Consensus 77 d~~~~~~V~e~lr~~a~~~ggdi~~l~~n~viITP~~ 113 (124)
T COG2450 77 DDDLFERVIEELRDTAEEVGGDIAKLGDNVVIITPNG 113 (124)
T ss_pred ChhHHHHHHHHHHHHHHHhCchhhhhcCCEEEECCCC
Confidence 4567889999999999998764 245677777754
No 112
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=24.79 E-value=1.1e+02 Score=23.84 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=50.3
Q ss_pred CcccccccchhhcCCCCCCHHHHHhhhcCCcee---ee---CCCCceEEEEEcCcee------e--echhhhHHHHHHHH
Q psy3998 2 NPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTV---VS---DGGKPKIQVEYKGEIK------K--FAPEEISSMVLTKM 67 (102)
Q Consensus 2 np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~------~--~s~~ev~~~il~~l 67 (102)
||.|....-|.|-++.|.|.+.+....+..-++ +. +.| ..++|-.+.++. . -+|+-+...-|.++
T Consensus 115 NPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~-~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~ 193 (606)
T PRK00694 115 NPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLG-KAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYI 193 (606)
T ss_pred CCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCC-CCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHH
Confidence 888987777779999998877666544433221 21 122 223333222111 1 15554444444443
Q ss_pred HHHHHHHhCCccCcEEEEeCCCCCHHHHHHHH
Q psy3998 68 REIAEVYLGGKVSEAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 68 ~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~ 99 (102)
+ -.-.....++|||+=++=-..--++.+
T Consensus 194 ~----i~e~~~f~diviS~KsSnv~~mi~Ayr 221 (606)
T PRK00694 194 E----VCEKLDYRDVVFSMKSSNPKVMVAAYR 221 (606)
T ss_pred H----HHHHCCCCcEEEEEEcCCHHHHHHHHH
Confidence 3 222345789999998765444444443
No 113
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.58 E-value=84 Score=21.15 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhCC-ccCcEEEEeCCCCC--HHHHHHHHHh
Q psy3998 56 PEEISSMVLTKMREIAEVYLGG-KVSEAVITVPAYFN--DSQRQATKDA 101 (102)
Q Consensus 56 ~~ev~~~il~~l~~~ae~~~~~-~~~~~VitVP~~f~--~~qr~~~~~A 101 (102)
|..|++.-=...++.|+.++.. -+.+-.=..|++.+ +.||.+|..|
T Consensus 118 PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARa 166 (256)
T COG4598 118 PVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARA 166 (256)
T ss_pred chHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHH
Confidence 3334444444555666666532 12222227799998 7788887765
No 114
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=24.31 E-value=2.5e+02 Score=19.47 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=49.4
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-C--CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-D--GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||+.-=..|-|.+-.+.-+...+. ++..++ | +|...-.+-..| .++|..-....+++.|++-|- ....-
T Consensus 17 HNTYL~g~Ql~~~ss~e~y~~aL~~--GcRcvElD~Wdg~~~eP~V~HG--~Tlts~i~f~dv~~aI~~~AF---~~S~y 89 (253)
T cd08632 17 HNTYLTGDQLLSQSKVDMYARVLQA--GCRCVEVDCWDGPDGEPVVHHG--YTLTSKITFRDVIETINKYAF---VKNEF 89 (253)
T ss_pred CCccccCCcccCcccHHHHHHHHHc--CCcEEEEEeecCCCCCcEEeeC--CCCccCcCHHHHHHHHHHHhc---cCCCC
Confidence 5666555666666544444444433 344332 1 222111122223 344444455666777776654 33457
Q ss_pred cEEEEeCCCCCHHHHHHHH
Q psy3998 81 EAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~ 99 (102)
.++||.-.+.+..|...+.
T Consensus 90 PvIlSlE~Hcs~~qQ~~ma 108 (253)
T cd08632 90 PVILSIENHCSIQQQKKIA 108 (253)
T ss_pred CEEEEecccCCHHHHHHHH
Confidence 7999999999988877654
No 115
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=24.13 E-value=76 Score=18.81 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCccCcEEEEeCCCCCHH
Q psy3998 65 TKMREIAEVYLGGKVSEAVITVPAYFNDS 93 (102)
Q Consensus 65 ~~l~~~ae~~~~~~~~~~VitVP~~f~~~ 93 (102)
..+....+..+.-+-..+|+|+|..++..
T Consensus 73 ~W~~~~~~~ll~~~y~HvVFTlP~~L~~~ 101 (111)
T PF14319_consen 73 QWIEKQREDLLPVPYFHVVFTLPHELRPL 101 (111)
T ss_pred HHHHHHHhhCCCCCeEEEEEcCcHHHHHH
Confidence 34444445556777789999999876643
No 116
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=23.90 E-value=1.6e+02 Score=19.41 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=24.7
Q ss_pred CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCH
Q psy3998 38 GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFND 92 (102)
Q Consensus 38 ~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~ 92 (102)
.+...+-+.++.. .+...++..|++..++........-++.||..|..
T Consensus 40 P~~~sllv~fdp~-------~~~~~l~~~l~~~~~~~~~~~~~~r~~~iPV~Y~~ 87 (202)
T TIGR00370 40 PGMNNLTVFYDMY-------EVYKHLPQRLSSPWEEVKDYEVNRRIIEIPVCYGG 87 (202)
T ss_pred cccEEEEEEECch-------hhHHHHHHHHHHHHhhccccCCCCeEEEEeeEeCC
Confidence 4445555656431 11233445555443332223334457899999983
No 117
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=23.71 E-value=1.6e+02 Score=17.46 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHhCCccCcEEEEeCC
Q psy3998 59 ISSMVLTKMREIAEVYLGGKVSEAVITVPA 88 (102)
Q Consensus 59 v~~~il~~l~~~ae~~~~~~~~~~VitVP~ 88 (102)
++..+++.+.+.|.+.-...++.+++.|-.
T Consensus 6 i~~~iv~~v~~~a~~~~~~~V~~V~l~iG~ 35 (114)
T PRK03681 6 LCQRALELIEQQAAKHGAKRVTGVWLKIGA 35 (114)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEEEcC
Confidence 566777777777777766778888888754
No 118
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=23.58 E-value=34 Score=16.30 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHH
Q psy3998 56 PEEISSMVLTKMREI 70 (102)
Q Consensus 56 ~~ev~~~il~~l~~~ 70 (102)
|+|+..+||.++--.
T Consensus 7 P~~il~~Il~~l~~~ 21 (48)
T PF00646_consen 7 PDEILQEILSYLDPK 21 (48)
T ss_dssp -HHHHHHHHHTS-HH
T ss_pred CHHHHHHHHHHCcHH
Confidence 677888888776443
No 119
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=23.56 E-value=1.5e+02 Score=16.78 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=34.6
Q ss_pred CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEe
Q psy3998 38 GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITV 86 (102)
Q Consensus 38 ~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitV 86 (102)
++...+.+... -..-....+++..+=..+++..+..+|.++.++-|.|
T Consensus 57 ~~~i~v~l~v~-v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V 104 (108)
T PF03780_consen 57 DGGITVDLHVV-VEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHV 104 (108)
T ss_pred CcceEEEEEEE-EECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEE
Confidence 44444444432 1123477889999999999999999999988877765
No 120
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=22.91 E-value=2.7e+02 Score=19.31 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=47.8
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-C--CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-D--GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||+.-=..|-|.+-.+.-+..... ++..++ | +|...-.+-..| .++|..-....+++.|++-|- ....-
T Consensus 17 HNTYL~g~Ql~~~ss~~~y~~aL~~--GcRcvElD~wdG~~~eP~V~HG--~tlts~i~f~dv~~~I~~~AF---~~S~y 89 (254)
T cd08596 17 HNTYLTGHQLKGESSVELYSQVLLT--GCRCVELDCWDGDDGMPIIYHG--HTLTTKIPFKDVVEAINRSAF---ITSDY 89 (254)
T ss_pred ccccccCCccCCccCHHHHHHHHHc--CCcEEEEEeecCCCCCcEEeeC--CCcccCcCHHHHHHHHHHHhc---cCCCC
Confidence 4666555566666544444444433 444332 1 232211122233 233433345555666666544 33457
Q ss_pred cEEEEeCCCCCHHHHHHHH
Q psy3998 81 EAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~ 99 (102)
.++||.-.+.+..|...+.
T Consensus 90 PvIlslE~Hcs~~qQ~~ma 108 (254)
T cd08596 90 PVILSIENHCSLQQQRKMA 108 (254)
T ss_pred CEEEEecccCCHHHHHHHH
Confidence 7999999999988877654
No 121
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=22.58 E-value=40 Score=15.13 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHH
Q psy3998 56 PEEISSMVLTKM 67 (102)
Q Consensus 56 ~~ev~~~il~~l 67 (102)
|.|++..+|.++
T Consensus 2 P~~ll~~I~~~l 13 (41)
T smart00256 2 PDEILEEILSKL 13 (41)
T ss_pred CHHHHHHHHHcC
Confidence 567788887766
No 122
>PLN00197 beta-amylase; Provisional
Probab=22.51 E-value=1.5e+02 Score=23.00 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=28.6
Q ss_pred echhhhHHHHHHHHHHHHHHHhCCccCcEEEE
Q psy3998 54 FAPEEISSMVLTKMREIAEVYLGGKVSEAVIT 85 (102)
Q Consensus 54 ~s~~ev~~~il~~l~~~ae~~~~~~~~~~Vit 85 (102)
-||.+++..+.+..++....+++..|.++-|.
T Consensus 242 RTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VG 273 (573)
T PLN00197 242 RTPVQCYADFMRAFRDNFKHLLGDTIVEIQVG 273 (573)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceeEEEec
Confidence 48999999999999999999998888887765
No 123
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=85 Score=17.21 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.2
Q ss_pred echhhhHHHHHHHHHHH
Q psy3998 54 FAPEEISSMVLTKMREI 70 (102)
Q Consensus 54 ~s~~ev~~~il~~l~~~ 70 (102)
=||+|+...|..+|.+.
T Consensus 59 et~eeLv~NIY~~i~En 75 (78)
T COG4844 59 ETPEELVENIYTFIEEN 75 (78)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 48999999999888763
No 124
>CHL00034 rpl22 ribosomal protein L22
Probab=22.12 E-value=1.9e+02 Score=17.33 Aligned_cols=29 Identities=10% Similarity=-0.068 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEE
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVIT 85 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~Vit 85 (102)
-.++..+|+.....|+...|.+..+++|+
T Consensus 51 a~~i~klL~sA~aNA~~~~gld~d~L~I~ 79 (117)
T CHL00034 51 CYPILKLVYSAAANASHNMGLNKANLFIS 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHccCCCccceEEE
Confidence 33455556666667766677777776664
No 125
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=22.10 E-value=1.7e+02 Score=18.20 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCccCc-EEEEeCCCCC
Q psy3998 58 EISSMVLTKMREIAEVYLGGKVSE-AVITVPAYFN 91 (102)
Q Consensus 58 ev~~~il~~l~~~ae~~~~~~~~~-~VitVP~~f~ 91 (102)
+++..+++...+..++. |....+ -++.||..|-
T Consensus 13 ~i~~~L~~ga~~~l~~~-g~~~~~i~v~~VPGa~E 46 (138)
T TIGR00114 13 DITDMLLKGAIDALKRL-GAEVDNIDVIWVPGAFE 46 (138)
T ss_pred HHHHHHHHHHHHHHHHc-CCCccceEEEECCcHHH
Confidence 56777777777766654 444333 6789999886
No 126
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=22.03 E-value=1.8e+02 Score=17.00 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 59 ISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 59 v~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
+...+...+.+..+++ ......+|+.+|....
T Consensus 51 Ite~~a~~i~~~i~~~-~~~~~P~Il~IP~~~g 82 (104)
T PRK01395 51 ITEQIAADIPETIERY-DNQVLPAIILIPSNQG 82 (104)
T ss_pred EcHHHHHHhHHHHHHh-cCCCCCEEEEeCCCCC
Confidence 3444556666666666 4567899999999664
No 127
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=21.77 E-value=1.8e+02 Score=18.14 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCccC-cEEEEeCCCCC
Q psy3998 58 EISSMVLTKMREIAEVYLGGKVS-EAVITVPAYFN 91 (102)
Q Consensus 58 ev~~~il~~l~~~ae~~~~~~~~-~~VitVP~~f~ 91 (102)
++...++.-..+..+.. |.+.. --|+.||..|-
T Consensus 20 ~I~~~Ll~ga~~~l~~~-gv~~~~i~v~~VPGa~E 53 (141)
T PLN02404 20 IITKNLLEGALETFKRY-SVKEENIDVVWVPGSFE 53 (141)
T ss_pred HHHHHHHHHHHHHHHHc-CCCccceEEEEcCcHHH
Confidence 56777777777776654 43333 37889999885
No 128
>KOG3915|consensus
Probab=21.63 E-value=2.5e+02 Score=21.57 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=44.8
Q ss_pred hhcCCCCCCHH-HHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHH---HHHHhC-CccCcEEEEe
Q psy3998 12 RLIGRKFEDQK-IQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREI---AEVYLG-GKVSEAVITV 86 (102)
Q Consensus 12 rllG~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~---ae~~~~-~~~~~~VitV 86 (102)
.+=|++|+.+- +...-....|++++-.|.....|..+| .+.+-..++.-.|||+|.-= +...++ .+|..+|++|
T Consensus 156 ~~p~~~y~tp~pv~~~p~~necKmVd~rG~kVAsF~i~g-~emiCLPQafdlFLKhlVGGLHTVYTKLKRLdI~PvVCnV 234 (641)
T KOG3915|consen 156 PLPGKPYSTPSPVENTPQNNECKMVDLRGAKVASFTIEG-CELICLPQAFDLFLKHLVGGLHTVYTKLKRLDITPVVCNV 234 (641)
T ss_pred CCCCCcCCCCCcccCCCcccceeeeeecCceeeEEEecC-ceEEecHHHHHHHHHHHhchHHHHHHHhhccceeeeeech
Confidence 34456665533 222223344666655555545555554 35566778999999999753 333332 2566666654
Q ss_pred CCCCCHHHHHHHH
Q psy3998 87 PAYFNDSQRQATK 99 (102)
Q Consensus 87 P~~f~~~qr~~~~ 99 (102)
+|-+.++
T Consensus 235 ------EQVRiLR 241 (641)
T KOG3915|consen 235 ------EQVRILR 241 (641)
T ss_pred ------HHHHHHh
Confidence 5555543
No 129
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=21.58 E-value=1.2e+02 Score=23.21 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=35.4
Q ss_pred eEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 42 ~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
.++|.++. ..+|-++|+..+++.+-...-..-|.++..-.-|.=-+.++.||+...+
T Consensus 250 ~V~V~yDp--~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G~qYrs~I~~~~~eq~~~a~~ 306 (521)
T PRK14018 250 TVKVTYDA--DKLSLDTILQYYFRVVDPTSLNKQGNDTGTQYRSGVYYTDPADKAVIAA 306 (521)
T ss_pred EEEEEECC--CcCcHHHHHHHHHHhCCCccccccCCCCCCCceEEEEeCCHHHHHHHHH
Confidence 36667754 7778888888888765544333333444333444445668888887754
No 130
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.42 E-value=1.8e+02 Score=16.76 Aligned_cols=40 Identities=23% Similarity=0.111 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhCCccCcEEEEeCCCCC-HHHHHHHHHh
Q psy3998 62 MVLTKMREIAEVYLGGKVSEAVITVPAYFN-DSQRQATKDA 101 (102)
Q Consensus 62 ~il~~l~~~ae~~~~~~~~~~VitVP~~f~-~~qr~~~~~A 101 (102)
.++..+.+...+........+|+.+|..-. ..-++.+++|
T Consensus 53 ~~~~~i~e~i~~~~~~~~~P~ii~IP~~~~~~~i~~~v~ra 93 (100)
T PRK02228 53 DDLEKLPRRLRRTLEESVEPTVVTLGGGGGSGGLREKIKRA 93 (100)
T ss_pred hHhHhhHHHHHHHHhcCCCCEEEEECCCccchHHHHHHHHH
Confidence 344455555556566678899999997442 3344444443
No 131
>PF14756 Pdase_C33_assoc: Peptidase_C33-associated domain
Probab=21.14 E-value=70 Score=19.53 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.1
Q ss_pred ceeeechhhhHHHHHHHHHHHH
Q psy3998 50 EIKKFAPEEISSMVLTKMREIA 71 (102)
Q Consensus 50 ~~~~~s~~ev~~~il~~l~~~a 71 (102)
+....|||||++.|=.||+..+
T Consensus 91 ktnr~tpeeva~kidqYlrgA~ 112 (147)
T PF14756_consen 91 KTNRATPEEVAAKIDQYLRGAT 112 (147)
T ss_pred cccCCCHHHHHHHHHHHHhccc
Confidence 4457799999999999998754
No 132
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=21.01 E-value=36 Score=19.47 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 62 MVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 62 ~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.+|+.+++.... +.+..|.+..||+.+.+|+
T Consensus 43 ~Flrel~~l~r~----------~Pv~vF~D~EqR~~vL~a~ 73 (87)
T PF09059_consen 43 LFLRELKELFRL----------MPVDVFNDEEQRQNVLDAV 73 (87)
T ss_dssp HHHHHHHHHHHT----------S-GGGSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------CcHHhcCCHHHHHHHHHHH
Confidence 456666665553 2345677899999998874
No 133
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=20.72 E-value=3e+02 Score=19.07 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=46.2
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcE
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEA 82 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~ 82 (102)
+||+.-=..|-|.+-.+.-....+...-+-.++ -+|..+-.+-..| .++|..--...+++.|++-|-. ..--.+
T Consensus 17 HNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG--~t~t~~i~f~~v~~~I~~~aF~---~s~yPv 91 (257)
T cd08593 17 HNTYLLEDQLKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHG--HTLTSKILFKDVIQAIREYAFK---VSPYPV 91 (257)
T ss_pred cCccccCCcccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeC--CccccCcCHHHHHHHHHHHhcc---CCCCCE
Confidence 466555555666654443344443332222121 1232211122223 2333333445556666665442 334679
Q ss_pred EEEeCCCCCHHHHHHHH
Q psy3998 83 VITVPAYFNDSQRQATK 99 (102)
Q Consensus 83 VitVP~~f~~~qr~~~~ 99 (102)
+||.-.+.+..|...+.
T Consensus 92 IlslE~Hcs~~qQ~~~a 108 (257)
T cd08593 92 ILSLENHCSVEQQKVMA 108 (257)
T ss_pred EEEeeccCCHHHHHHHH
Confidence 99999999988877664
No 134
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=20.50 E-value=66 Score=17.89 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=15.7
Q ss_pred eeechhhhHHHHHHHHHHHHHH
Q psy3998 52 KKFAPEEISSMVLTKMREIAEV 73 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae~ 73 (102)
+.++|||++.+-.+.+.+...+
T Consensus 33 ~~I~PEeIv~iH~~~v~~l~~~ 54 (77)
T PF08673_consen 33 KDISPEEIVEIHKSAVQELSPS 54 (77)
T ss_dssp TT--HHHHHHHHHHHHHHH-TT
T ss_pred cCCCHHHHHHHHHHHHHHHccc
Confidence 5689999999998888877654
No 135
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=20.23 E-value=1.3e+02 Score=14.53 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=18.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhC
Q psy3998 55 APEEISSMVLTKMREIAEVYLG 76 (102)
Q Consensus 55 s~~ev~~~il~~l~~~ae~~~~ 76 (102)
...|++-.+-..|++++++..|
T Consensus 9 aaKe~IKsLt~QlK~maekl~~ 30 (39)
T PF13713_consen 9 AAKEVIKSLTAQLKDMAEKLPG 30 (39)
T ss_pred HHHHHHHHHHHHHHHHHHhCch
Confidence 4568888899999999998754
No 136
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=20.10 E-value=2e+02 Score=18.42 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
++++..+|.-..+..+..-..+-.--|+.||..|-
T Consensus 22 ~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~E 56 (158)
T PRK12419 22 ADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFE 56 (158)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH
Confidence 35677777777777665532222337889999885
No 137
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=20.05 E-value=1e+02 Score=22.08 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=31.9
Q ss_pred eeechhhhHHHHHHHHHHHHHHHhCCccCcEE---EEeCCCCCHHHHHHHHHhC
Q psy3998 52 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAV---ITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~V---itVP~~f~~~qr~~~~~Aa 102 (102)
...++++++.++.+.+++=.+ |.+++-=+ +|+-+.|+..++..++.||
T Consensus 108 ~~~~i~~~ae~~v~ei~~Gi~---gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA 158 (316)
T COG1735 108 ALRPIEELAEFVVKEIEEGIA---GTGIKAGIIKEAGGSPAITPLEEKSLRAAA 158 (316)
T ss_pred hhCCHHHHHHHHHHHHHhccc---CCccccceeeeccCcccCCHHHHHHHHHHH
Confidence 445678888888887774322 44444322 3444559999999999886
Done!