Query psy3998
Match_columns 102
No_of_seqs 106 out of 1093
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 22:43:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yuw_A Heat shock cognate 71 k 99.9 1.5E-24 5.2E-29 158.1 11.8 102 1-102 61-162 (554)
2 3d2f_A Heat shock protein homo 99.9 1.9E-24 6.6E-29 160.5 11.5 102 1-102 59-161 (675)
3 4b9q_A Chaperone protein DNAK; 99.9 4.8E-23 1.6E-27 151.5 11.6 98 1-102 60-158 (605)
4 3i33_A Heat shock-related 70 k 99.9 1.1E-22 3.9E-27 142.6 12.1 102 1-102 80-181 (404)
5 3qfu_A 78 kDa glucose-regulate 99.9 4E-22 1.4E-26 139.1 11.5 102 1-102 75-176 (394)
6 2kho_A Heat shock protein 70; 99.9 3.6E-22 1.2E-26 146.8 10.4 98 1-102 60-158 (605)
7 1dkg_D Molecular chaperone DNA 99.8 1.9E-19 6.5E-24 125.5 10.9 98 1-102 60-158 (383)
8 4gni_A Putative heat shock pro 99.8 2.8E-19 9.7E-24 125.7 6.5 100 1-102 70-173 (409)
9 2v7y_A Chaperone protein DNAK; 99.6 1.5E-15 5E-20 109.8 9.2 74 1-102 59-132 (509)
10 1jce_A ROD shape-determining p 97.9 7E-06 2.4E-10 56.2 3.5 44 55-102 75-118 (344)
11 2fsj_A Hypothetical protein TA 97.3 3.4E-05 1.2E-09 53.2 0.4 50 52-102 93-144 (346)
12 3h1q_A Ethanolamine utilizatio 96.8 0.00092 3.2E-08 44.0 3.4 44 58-101 71-114 (272)
13 1k8k_A ARP3, actin-like protei 93.9 0.09 3.1E-06 36.7 4.8 24 79-102 107-130 (418)
14 2fxu_A Alpha-actin-1, actin, a 92.5 0.2 6.8E-06 34.5 4.8 22 80-101 101-122 (375)
15 4a2a_A Cell division protein F 68.7 8.8 0.0003 27.0 4.8 33 57-89 53-86 (419)
16 1msz_A DNA-binding protein smu 67.6 5.2 0.00018 22.1 2.8 19 82-100 34-52 (86)
17 2ych_A Competence protein PILM 67.5 4.1 0.00014 27.6 2.9 33 52-88 96-128 (377)
18 1v95_A Nuclear receptor coacti 65.8 15 0.00052 21.7 4.7 49 26-74 57-112 (130)
19 2ns6_A Mobilization protein A; 62.6 6.4 0.00022 24.7 2.8 37 64-100 56-92 (185)
20 1k8k_B ARP2, actin-like protei 58.9 2 6.8E-05 29.8 0.0 22 80-101 105-126 (394)
21 4fo0_A Actin-related protein 8 54.8 43 0.0015 24.2 6.5 29 72-100 186-219 (593)
22 4hti_A Receptor-type tyrosine- 53.6 27 0.00093 19.7 4.1 41 40-81 51-91 (99)
23 2kp6_A Uncharacterized protein 49.2 11 0.00039 20.5 2.0 16 86-101 44-59 (82)
24 2pn2_A Uncharacterized protein 41.0 56 0.0019 19.4 6.5 54 49-102 54-131 (155)
25 3agx_A DNAJ homolog subfamily 33.1 42 0.0014 20.6 3.1 26 76-101 153-178 (181)
26 2cxi_A Phenylalanyl-tRNA synth 33.0 79 0.0027 21.7 4.7 31 6-36 286-316 (348)
27 2q2g_A HSP40 protein, heat sho 32.0 47 0.0016 20.4 3.2 26 76-101 153-178 (180)
28 3i38_A Putative chaperone DNAJ 31.4 28 0.00097 19.6 2.0 26 76-101 68-93 (109)
29 2qt7_A Receptor-type tyrosine- 29.4 77 0.0026 17.5 4.2 42 40-82 44-85 (91)
30 2oa5_A Hypothetical protein BQ 27.3 74 0.0025 18.3 3.2 48 53-102 7-56 (110)
31 1rvv_A Riboflavin synthase; tr 27.1 96 0.0033 18.8 3.9 35 57-91 24-58 (154)
32 1ejb_A Lumazine synthase; anal 26.9 87 0.003 19.3 3.7 35 57-91 28-62 (168)
33 1xao_A YDJ1, mitochondrial pro 26.9 68 0.0023 18.3 3.1 26 76-101 68-95 (121)
34 3osj_A Phycobilisome LCM core- 26.4 23 0.00077 21.5 0.9 17 8-24 92-109 (147)
35 3npg_A Uncharacterized DUF364 26.3 23 0.0008 23.1 1.1 28 60-87 3-31 (249)
36 3r8s_S 50S ribosomal protein L 26.3 94 0.0032 17.5 3.8 26 60-85 47-72 (110)
37 1hqk_A 6,7-dimethyl-8-ribityll 26.2 1E+02 0.0035 18.6 3.9 34 57-91 24-58 (154)
38 1di0_A Lumazine synthase; tran 26.0 1E+02 0.0035 18.8 3.9 35 57-91 22-56 (158)
39 2obx_A DMRL synthase 1, 6,7-di 25.7 1E+02 0.0035 18.7 3.9 35 57-91 23-57 (157)
40 3owr_A Uncharacterized hypothe 25.2 37 0.0013 20.2 1.7 17 80-96 55-74 (134)
41 3ry0_A Putative tautomerase; o 25.2 69 0.0024 15.6 2.9 19 83-101 4-22 (65)
42 1i4j_A 50S ribosomal protein L 24.8 1E+02 0.0035 17.4 3.8 27 59-85 46-72 (110)
43 3nph_B Phycobilisome 32.1 kDa 24.1 29 0.00098 21.1 1.1 17 8-24 81-98 (148)
44 1g6u_A Domain swapped dimer; d 23.9 32 0.0011 16.0 1.0 11 52-62 15-25 (48)
45 3ohw_B Phycobilisome LCM core- 23.9 28 0.00095 21.2 1.0 17 8-24 93-110 (148)
46 2ky4_A Phycobilisome linker po 23.8 28 0.00095 21.2 1.0 18 8-25 84-102 (149)
47 3pru_C Phycobilisome 32.1 kDa 23.2 27 0.00094 21.3 0.9 17 8-24 86-103 (154)
48 2zkm_X 1-phosphatidylinositol- 23.1 1.9E+02 0.0066 22.2 5.7 89 4-99 327-421 (799)
49 1kz1_A 6,7-dimethyl-8-ribityll 23.1 1.3E+02 0.0044 18.3 3.9 35 57-91 29-64 (159)
50 3qii_A PHD finger protein 20; 22.4 74 0.0025 17.4 2.5 32 28-59 36-68 (85)
51 3nq4_A 6,7-dimethyl-8-ribityll 22.3 1.4E+02 0.0048 18.1 4.8 35 57-91 24-59 (156)
52 3l46_A Protein ECT2; alternati 22.2 71 0.0024 18.1 2.5 20 79-99 22-41 (112)
53 3js6_A Uncharacterized PARM pr 22.0 56 0.0019 22.3 2.4 44 58-101 91-136 (355)
54 1djx_A PLC-D1, phosphoinositid 21.7 1.3E+02 0.0045 22.3 4.4 89 4-99 179-270 (624)
55 1iv0_A Hypothetical protein; r 21.6 1.1E+02 0.0038 16.7 4.5 28 61-91 37-64 (98)
56 1b7y_B Phers, protein (phenyla 21.6 1.4E+02 0.0049 22.9 4.7 31 6-36 407-437 (785)
No 1
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.92 E-value=1.5e-24 Score=158.05 Aligned_cols=102 Identities=76% Similarity=1.217 Sum_probs=96.4
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||.||++++|||||++++|+.++..++++||+++..+|.+.+.+.+.++.+.++|+++++++|++|++.|+.++|.++.
T Consensus 61 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~ 140 (554)
T 1yuw_A 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVT 140 (554)
T ss_dssp TCGGGEECCGGGTTTCCSSCSHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hChhhehHhhHHhcCCCCCcHHHHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 58999999999999999999999999999999998778888899988887889999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 81 EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~~Aa 102 (102)
++|||||++|++.||+++++||
T Consensus 141 ~~VitVPa~f~~~qr~a~~~A~ 162 (554)
T 1yuw_A 141 NAVVTVPAYFNDSQRQATKDAG 162 (554)
T ss_dssp EEEEEECTTCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999999985
No 2
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.91 E-value=1.9e-24 Score=160.51 Aligned_cols=102 Identities=26% Similarity=0.511 Sum_probs=95.2
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++|||||+.++|+.++...+++||+++. .+|.+.+.+.+.|+.+.++|+++++|+|++|++.|+.++|.++
T Consensus 59 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v 138 (675)
T 3d2f_A 59 SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANI 138 (675)
T ss_dssp TCGGGEECCHHHHTTCBTTCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred hChHhHHHHHHHHhCCCCCcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 589999999999999999999999999999999876 4688888888887778999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 139 ~~~VITVPa~f~~~qR~a~~~Aa 161 (675)
T 3d2f_A 139 TDVCIAVPPWYTEEQRYNIADAA 161 (675)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999985
No 3
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.89 E-value=4.8e-23 Score=151.48 Aligned_cols=98 Identities=59% Similarity=0.966 Sum_probs=89.2
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++|||||+.++++.++...+++||+++. ++|.+.+.+ .+ ..++|+++++++|++|++.|+.++|.++
T Consensus 60 ~~p~~ti~~~KrllG~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~--~~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v 135 (605)
T 4b9q_A 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPV 135 (605)
T ss_dssp TCGGGEECCGGGTTTCBTTSHHHHHHHTTCSSEEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hCCCcEehhhHHhhCCCCCCHHHHHHhhcCCeEEEEcCCCceEEEE--CC--EEECHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999999876 456555544 33 7899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 136 ~~~VITVPa~f~~~qr~a~~~Aa 158 (605)
T 4b9q_A 136 TEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999985
No 4
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.89 E-value=1.1e-22 Score=142.59 Aligned_cols=102 Identities=83% Similarity=1.280 Sum_probs=97.0
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
++|.++++.+||+||++++++.++...+.|||.++.++|.+.+.+.+.++...++|+++++++|++|++.++.++|.++.
T Consensus 80 ~~~~~~~~~~Kr~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~ 159 (404)
T 3i33_A 80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVH 159 (404)
T ss_dssp TCSTTEECCGGGTTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hChhhhHHHHHHHhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 47999999999999999999999999999999998888999999999888889999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 81 EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~~Aa 102 (102)
++|||||++|++.||+++++||
T Consensus 160 ~~vitvPa~~~~~~r~~~~~a~ 181 (404)
T 3i33_A 160 SAVITVPAYFNDSQRQATKDAG 181 (404)
T ss_dssp EEEEEECTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999999985
No 5
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.88 E-value=4e-22 Score=139.14 Aligned_cols=102 Identities=66% Similarity=1.039 Sum_probs=96.4
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
++|.++++.+||+||++++++.++...+.+|+.++..+|.+.+.+.+.++...++|+++++++|++|++.++.++|.++.
T Consensus 75 ~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a~~~~~~~~~ 154 (394)
T 3qfu_A 75 ANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLGTKVT 154 (394)
T ss_dssp GCGGGEECCGGGTTTCCTTCHHHHHHHTTCSSEEEEETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred hCcccCHHHHHHHhCCCCCcHHHHHHhhcCCeEEEcCCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 47999999999999999999999999999999998888889999988887889999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 81 EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~~Aa 102 (102)
++|||||++|++.||+++++||
T Consensus 155 ~~vitvP~~~~~~~r~~~~~a~ 176 (394)
T 3qfu_A 155 HAVVTVPAYFNDAQRQATKDAG 176 (394)
T ss_dssp EEEEEECTTCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999999885
No 6
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.87 E-value=3.6e-22 Score=146.80 Aligned_cols=98 Identities=59% Similarity=0.966 Sum_probs=88.5
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||.||++++||+||+.++|+.++...+.+||+++. .+|.+.+.+ +| +.++|+|+++++|++|++.|+.++|.++
T Consensus 60 ~~p~~t~~~~Kr~iG~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~--~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~v 135 (605)
T 2kho_A 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPV 135 (605)
T ss_dssp TCGGGEEECGGGTTTCBSSSTTHHHHHHHCSSCEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred hCCCCEeehhhHhhCCCCCcHHHHHHhhcCCeEEEECCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999999999999888899999864 566666555 44 6899999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 136 ~~~VitVPa~f~d~qr~a~~~A~ 158 (605)
T 2kho_A 136 TEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHH
T ss_pred cEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999985
No 7
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.81 E-value=1.9e-19 Score=125.46 Aligned_cols=98 Identities=59% Similarity=0.966 Sum_probs=86.8
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
++|.++++++||+||+.++++.++...+.+|++++. .+|...+.+ ++ +.++|+++++++|+++++.|+.+++.++
T Consensus 60 ~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~g--~~~~~~~i~~~~L~~l~~~a~~~~~~~~ 135 (383)
T 1dkg_D 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPV 135 (383)
T ss_dssp TCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hCccceeehhHHhhCCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999898888889999764 456555554 43 5889999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++|||||++|++.||+++++||
T Consensus 136 ~~~vitvP~~~~~~~r~~~~~a~ 158 (383)
T 1dkg_D 136 TEAVITVPAYFNDAQRQATKDAG 158 (383)
T ss_dssp CEEEECBCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999874
No 8
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.78 E-value=2.8e-19 Score=125.66 Aligned_cols=100 Identities=30% Similarity=0.421 Sum_probs=85.2
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEc----CceeeechhhhHHHHHHHHHHHHHHHhC
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYK----GEIKKFAPEEISSMVLTKMREIAEVYLG 76 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~ev~~~il~~l~~~ae~~~~ 76 (102)
+||.|++.++|++||++++++.++. ..+++.+...+|.+.+.+... ++.+.++|+||++++|++|++.|+.+++
T Consensus 70 ~~~~~~i~~~K~llg~~~~~~~~~~--~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~ 147 (409)
T 4gni_A 70 RNPKNTVAYFRDILGQDFKSVDPTH--NHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLG 147 (409)
T ss_dssp HCGGGEEESCGGGTTCCGGGCCCGG--GTTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHT
T ss_pred hChHhhHHHHHHHhCCCccchhhhh--hccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhC
Confidence 3799999999999999988865543 344555566677777777654 3567999999999999999999999999
Q ss_pred CccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 77 GKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 77 ~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++.++|||||++|++.||+++++||
T Consensus 148 ~~~~~~vitvPa~~~~~~r~~~~~a~ 173 (409)
T 4gni_A 148 KKVTSAVITIPTNFTEKQKAALIAAA 173 (409)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999999985
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.63 E-value=1.5e-15 Score=109.80 Aligned_cols=74 Identities=57% Similarity=0.933 Sum_probs=64.7
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+|| |+++.+||+||++|. +..+| ..++|+++++++|++|++.|+.++|.++.
T Consensus 59 ~~p-~~~~~~Kr~lg~p~~-------------------------~~~~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~~~ 110 (509)
T 2v7y_A 59 TNP-NTIISIKRHMGTDYK-------------------------VEIEG--KQYTPQEISAIILQYLKSYAEDYLGEPVT 110 (509)
T ss_dssp TCS-SEEECGGGTTTSCCC-------------------------EEETT--EEECHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred hCC-CcHHHHHHhcCCCcE-------------------------EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 478 999999999998432 11233 47899999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 81 EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~~Aa 102 (102)
++|||||++|++.||+++++||
T Consensus 111 ~~VitvPa~~~~~qr~a~~~a~ 132 (509)
T 2v7y_A 111 RAVITVPAYFNDAQRQATKDAG 132 (509)
T ss_dssp EEEEEECTTCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999999985
No 10
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=97.91 E-value=7e-06 Score=56.17 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=33.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.++++.+++|++++.. ..++ ..++|||||++|++.||+++++|+
T Consensus 75 ~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~ 118 (344)
T 1jce_A 75 VALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAG 118 (344)
T ss_dssp HHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHH
Confidence 4677777777776543 1233 378999999999999999999874
No 11
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=97.35 E-value=3.4e-05 Score=53.24 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=38.4
Q ss_pred eeechhhhHHHHHHHHHHHHHHHhCCccCcEE--EEeCCCCCHHHHHHHHHhC
Q psy3998 52 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAV--ITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~V--itVP~~f~~~qr~~~~~Aa 102 (102)
..+++++..+|++..|+..++...+.+ .++| |+||++|++.||+++++|+
T Consensus 93 ~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~ 144 (346)
T 2fsj_A 93 GRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEAL 144 (346)
T ss_dssp TCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred CcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHH
Confidence 455678899999999988764333444 4699 9999999999999999873
No 12
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=96.83 E-value=0.00092 Score=44.03 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 58 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 58 ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
+.+..+|+++++.++.+.+.+...+|+|+|++|+..+|+.+.++
T Consensus 71 ~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~ 114 (272)
T 3h1q_A 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHV 114 (272)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHH
Confidence 67889999999999999898899999999999999999988775
No 13
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=93.89 E-value=0.09 Score=36.69 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.3
Q ss_pred cCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 79 VSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 79 ~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
...+|||+|++++..||+++.+++
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~ 130 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIM 130 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 14
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=92.49 E-value=0.2 Score=34.53 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=19.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHh
Q psy3998 80 SEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~A 101 (102)
..+|||+|++++..||+++.++
T Consensus 101 ~~vvit~p~~~~~~~r~~~~e~ 122 (375)
T 2fxu_A 101 HPTLLTEAPLNPKANREKMTQI 122 (375)
T ss_dssp SCEEEEECTTCCHHHHHHHHHH
T ss_pred CcEEEEeCCCCcHHHHHHHHHH
Confidence 5699999999999999987754
No 15
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=68.72 E-value=8.8 Score=26.95 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCc-EEEEeCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSE-AVITVPAY 89 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~-~VitVP~~ 89 (102)
.+-++..++.+++.+|+.+|.++++ +++++|..
T Consensus 53 i~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~g~ 86 (419)
T 4a2a_A 53 AIAFKESVNTLLKELEEQLQKSLRSDFVISFSSV 86 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCSEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCceEEEEEcCC
Confidence 3455788999999999999999999 99999987
No 16
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=67.64 E-value=5.2 Score=22.07 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=16.8
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy3998 82 AVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 82 ~VitVP~~f~~~qr~~~~~ 100 (102)
-.++.|+.|+..||..+-.
T Consensus 34 ~~l~FP~sLs~~eR~~IH~ 52 (86)
T 1msz_A 34 MQLEFPPSLNSHDRLRVHQ 52 (86)
T ss_dssp SEEEECTTCCSHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHH
Confidence 5899999999999998864
No 17
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=67.55 E-value=4.1 Score=27.64 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=24.8
Q ss_pred eeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCC
Q psy3998 52 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPA 88 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~ 88 (102)
..++++|+... ++..++.+++.++.++||++|.
T Consensus 96 ~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~ 128 (377)
T 2ych_A 96 PKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAP 128 (377)
T ss_dssp ECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEE
T ss_pred CCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEE
Confidence 46788887654 3457888899999999999983
No 18
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=65.77 E-value=15 Score=21.75 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=33.9
Q ss_pred hhhcCCceeee-----CCCCceEEEEEc--CceeeechhhhHHHHHHHHHHHHHHH
Q psy3998 26 DIKHWPFTVVS-----DGGKPKIQVEYK--GEIKKFAPEEISSMVLTKMREIAEVY 74 (102)
Q Consensus 26 ~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~s~~ev~~~il~~l~~~ae~~ 74 (102)
.+.+.||-++. .++.+.+..... ++...++.+|+++++...+...-...
T Consensus 57 ~~~kvPy~lVVG~kE~e~~sVsVR~r~~~~~e~~~m~lde~i~~l~~~~~~~~~~~ 112 (130)
T 1v95_A 57 SRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNEC 112 (130)
T ss_dssp HHHTCSEEEEECHHHHHHTEEEEEECSSSCCEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEechHHhcCeeEEEecCCCCCccCccCHHHHHHHHHHHHHHHhhhh
Confidence 45778998753 235556665565 45568999999999988887654433
No 19
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=62.57 E-value=6.4 Score=24.71 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHH
Q psy3998 64 LTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 64 l~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~ 100 (102)
|=.-.+.+|+.-+...++++|+.|.-++..|+..+..
T Consensus 56 lWn~vE~~ER~na~lare~~iALP~EL~~eq~~~L~~ 92 (185)
T 2ns6_A 56 YWDAADLYERANGRLFKEVEFALPVELTLDQQKALAS 92 (185)
T ss_dssp HHHHHHHHSCTTSCCEEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHhhcccCCeEEEEEEEECCccCCHHHHHHHHH
Confidence 3333455553223456889999999999999988764
No 20
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=58.92 E-value=2 Score=29.77 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=0.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHHh
Q psy3998 80 SEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~A 101 (102)
..++||+|++++..+|+++.+.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~ 126 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEV 126 (394)
T ss_dssp ----------------------
T ss_pred CcEEEEECCCCCHHHHHHHHHH
Confidence 4599999999999999987764
No 21
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=54.83 E-value=43 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=22.0
Q ss_pred HHHhCCccC-----cEEEEeCCCCCHHHHHHHHH
Q psy3998 72 EVYLGGKVS-----EAVITVPAYFNDSQRQATKD 100 (102)
Q Consensus 72 e~~~~~~~~-----~~VitVP~~f~~~qr~~~~~ 100 (102)
.+.++.+.. .+++|.|..++...|+.+.+
T Consensus 186 ~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~e 219 (593)
T 4fo0_A 186 QKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVN 219 (593)
T ss_dssp HHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHH
T ss_pred HHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHH
Confidence 455665443 39999999999999988754
No 22
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=53.62 E-value=27 Score=19.71 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=32.5
Q ss_pred CceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCc
Q psy3998 40 KPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSE 81 (102)
Q Consensus 40 ~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~ 81 (102)
.+.+.|+...+.+.+++.+|+..+.. .|..-++.+|..|..
T Consensus 51 g~aVTFrV~~N~~n~taadVA~~a~~-~K~~Le~~tG~~I~~ 91 (99)
T 4hti_A 51 GPAVTFKVSANVQNVTTEDVEKATVD-NKDKLEETSGLKILQ 91 (99)
T ss_dssp TTEEEEEECCCTTCCCHHHHHHHHHH-THHHHHHHHSSCEEE
T ss_pred CceEEEEeccCCCCCCHHHHHHHHHH-HHHHHHHhhCeEEEe
Confidence 35667777667789999999998887 888889988987643
No 23
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=49.17 E-value=11 Score=20.52 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=12.9
Q ss_pred eCCCCCHHHHHHHHHh
Q psy3998 86 VPAYFNDSQRQATKDA 101 (102)
Q Consensus 86 VP~~f~~~qr~~~~~A 101 (102)
=-++||+.||..++++
T Consensus 44 dApFWt~sQ~~FL~E~ 59 (82)
T 2kp6_A 44 EAPFWTPAQAAFLRQA 59 (82)
T ss_dssp TCTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 3478999999998875
No 24
>2pn2_A Uncharacterized protein; putative osmotic stress induced and detoxification response structural genomics; 1.95A {Psychrobacter arcticus} SCOP: d.227.1.1
Probab=41.02 E-value=56 Score=19.43 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=35.6
Q ss_pred CceeeechhhhHHHHHHHHHHHHHH----HhCCccC--------------------cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 49 GEIKKFAPEEISSMVLTKMREIAEV----YLGGKVS--------------------EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 49 ~~~~~~s~~ev~~~il~~l~~~ae~----~~~~~~~--------------------~~VitVP~~f~~~qr~~~~~Aa 102 (102)
|...-.+|+|++..=|..+...+-. ..|.++. .+.+++|...++.|++.+.++|
T Consensus 54 G~~~g~nP~eLllaAlaaC~~~~~~~~a~~~gi~~~~~~v~v~~~~~~~~~~~~~i~l~v~l~g~~~~e~~~~l~~~a 131 (155)
T 2pn2_A 54 GKGEAFSPTDLLATSLASCMLTIIGIKARDMEIDIAGTTAEVTKVMAADPRRVSEVHIAITFNQELDDKTQKIFYNTA 131 (155)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEETTTTEEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEEEEEEEEcCCCCcEEEEEEEEEECCCCCHHHHHHHHHHh
Confidence 3456689999987766665554321 2232221 2677889889999999888764
No 25
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=33.11 E-value=42 Score=20.63 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=20.5
Q ss_pred CCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 76 GGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 76 ~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
|.-+-.+.|.+|...+..||+.+++.
T Consensus 153 GDL~V~~~V~~P~~ls~~q~~~l~~~ 178 (181)
T 3agx_A 153 GDLIIEFEVIFPERIPQTSRTVLEQV 178 (181)
T ss_dssp CCEEEEEEEECCSCCCHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHh
Confidence 33344578889999999999998864
No 26
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=33.01 E-value=79 Score=21.67 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.0
Q ss_pred ccccchhhcCCCCCCHHHHHhhhcCCceeee
Q psy3998 6 TVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS 36 (102)
Q Consensus 6 ti~~~KrllG~~~~~~~v~~~~~~~~~~~~~ 36 (102)
....+++++|..++..++.....+..|.+..
T Consensus 286 ~~~~i~~~lG~~l~~~~i~~iL~~lg~~~~~ 316 (348)
T 2cxi_A 286 ELDYIRKLSGLELNDGEIKELLEKMMYEVEI 316 (348)
T ss_dssp EHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHhCCCCCHHHHHHHHHHcCCeEEe
Confidence 3456789999999999999999999998753
No 27
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=31.96 E-value=47 Score=20.39 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 76 GGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 76 ~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
|.-+-.+.|.+|...+..||+.+++.
T Consensus 153 GDL~V~~~V~~P~~Ls~~q~~~l~~~ 178 (180)
T 2q2g_A 153 GDLILEFDICFPKSLTPEQKKLIKEA 178 (180)
T ss_dssp CCEEEEEEEECCSCCCHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHh
Confidence 33344578889999999999998865
No 28
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=31.38 E-value=28 Score=19.59 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.2
Q ss_pred CCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 76 GGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 76 ~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
|.-+-.+-|.+|...+..||+.+++.
T Consensus 68 GDL~v~~~V~~P~~Ls~~q~~~l~~l 93 (109)
T 3i38_A 68 GDLFAVIKIVMPTKPDEKARELWQQL 93 (109)
T ss_dssp CCEEEEEEECCCSSCCHHHHHHHHHH
T ss_pred cCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 44455677788999999999998764
No 29
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=29.40 E-value=77 Score=17.54 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=32.9
Q ss_pred CceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccCcE
Q psy3998 40 KPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEA 82 (102)
Q Consensus 40 ~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~ 82 (102)
.+.+.|....+...++..+|+..+.. .|+.-|+.+|..|-+.
T Consensus 44 g~aVTFrV~~N~~n~taadVa~~a~~-~k~~Le~~~G~~Iv~a 85 (91)
T 2qt7_A 44 GPALTFRIRHNEQNLSLADVTQQAGL-VKSELEAQTGLQILQT 85 (91)
T ss_dssp TTEEEEEECCCTTCCCHHHHHHHHHH-THHHHHHHHTSCEEEE
T ss_pred cceEEEEeccCcccCCHHHHHHHHHH-hHHHHHHhhCeEEEec
Confidence 35667777777789999999988877 5888899999876543
No 30
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.31 E-value=74 Score=18.26 Aligned_cols=48 Identities=21% Similarity=0.090 Sum_probs=25.7
Q ss_pred eechhhhHHHHHHHHHHHHHHHhCCccCc--EEEEeCCCCCHHHHHHHHHhC
Q psy3998 53 KFAPEEISSMVLTKMREIAEVYLGGKVSE--AVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 53 ~~s~~ev~~~il~~l~~~ae~~~~~~~~~--~VitVP~~f~~~qr~~~~~Aa 102 (102)
..|+||+.+.+-+=-.+. +.+...++. -+=+=|.-.|..||+++..|+
T Consensus 7 ~~t~EeLaaeL~kLqmEN--K~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~ 56 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLEN--KTLKQKVKSSGAVSSDDSILTAAKRESIIVSS 56 (110)
T ss_dssp CSSHHHHHHHHHHHHHHH--HHHHHTC---------CCBCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH--HHHHHHHhcCCCCCCCCccCCHHHHHHHHHHH
Confidence 568899988875422221 111222221 222557788999999988763
No 31
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=27.09 E-value=96 Score=18.78 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
+++...+|.-.++..++.--...+=-|++||..|-
T Consensus 24 ~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafE 58 (154)
T 1rvv_A 24 DFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFE 58 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH
Confidence 45677777777776666532223346899999887
No 32
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=26.91 E-value=87 Score=19.29 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
+++...+|.-.++..++.--.+..=.|++||..|-
T Consensus 28 ~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafE 62 (168)
T 1ejb_A 28 RVIIDALVKGAIERMASLGVEENNIIIETVPGSYE 62 (168)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH
Confidence 45677777777777766532333446899999987
No 33
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=26.90 E-value=68 Score=18.29 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=20.9
Q ss_pred CCccCcEEEEeCCC--CCHHHHHHHHHh
Q psy3998 76 GGKVSEAVITVPAY--FNDSQRQATKDA 101 (102)
Q Consensus 76 ~~~~~~~VitVP~~--f~~~qr~~~~~A 101 (102)
|.-+-.+.|.+|.. ++..||+.+++.
T Consensus 68 GDL~V~~~V~~P~~~~ls~~q~~~l~~l 95 (121)
T 1xao_A 68 GNLIIKFTIKFPENHFTSEENLKKLEEI 95 (121)
T ss_dssp CCEEEEEEEECCCTTCSCHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHH
Confidence 55566788888998 999999998764
No 34
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=26.35 E-value=23 Score=21.52 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=11.2
Q ss_pred ccchhhcCCCC-CCHHHH
Q psy3998 8 FDAKRLIGRKF-EDQKIQ 24 (102)
Q Consensus 8 ~~~KrllG~~~-~~~~v~ 24 (102)
.++|+|||+.- +..++.
T Consensus 92 l~~khlLGR~p~~~~E~~ 109 (147)
T 3osj_A 92 LAFRHILGRGPSSREEVQ 109 (147)
T ss_dssp HHHHHHHSSCCCCHHHHH
T ss_pred HHhhhhcCCCCCCHHHHH
Confidence 46899999954 444443
No 35
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=26.28 E-value=23 Score=23.14 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhC-CccCcEEEEeC
Q psy3998 60 SSMVLTKMREIAEVYLG-GKVSEAVITVP 87 (102)
Q Consensus 60 ~~~il~~l~~~ae~~~~-~~~~~~VitVP 87 (102)
..|||+.|++.|.+.++ .++.++++.++
T Consensus 3 ~~mil~~i~~~a~~~~~~~~v~d~~~Gl~ 31 (249)
T 3npg_A 3 NGMLLSRIKKKAMELAEDLKLVDFSFGLP 31 (249)
T ss_dssp TTSHHHHHHHHHHHHGGGCEEEEEECBSS
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEEEcCc
Confidence 36899999999987764 56777776655
No 36
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=26.26 E-value=94 Score=17.54 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhCCccCcEEEE
Q psy3998 60 SSMVLTKMREIAEVYLGGKVSEAVIT 85 (102)
Q Consensus 60 ~~~il~~l~~~ae~~~~~~~~~~Vit 85 (102)
+..+|+.....|+...|.+..+.+|+
T Consensus 47 v~k~L~sA~aNAe~~~gld~d~L~I~ 72 (110)
T 3r8s_S 47 VKKVLESAIANAEHNDGADIDDLKVT 72 (110)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTSCEEE
T ss_pred HHHHHHHHHHhHHHhcCCChhheEEE
Confidence 34455555666776678888877764
No 37
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=26.17 E-value=1e+02 Score=18.65 Aligned_cols=34 Identities=12% Similarity=0.259 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCc-cCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGK-VSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~-~~~~VitVP~~f~ 91 (102)
+++...++.-.++..++. |.+ .+=-|++||..|-
T Consensus 24 ~~I~~~Ll~ga~~~l~~~-gv~~~~i~v~~VPGafE 58 (154)
T 1hqk_A 24 HALVDRLVEGAIDCIVRH-GGREEDITLVRVPGSWE 58 (154)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCGGGEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHc-CCCccceEEEECCcHHH
Confidence 456777777777766654 433 2346899999886
No 38
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=26.05 E-value=1e+02 Score=18.75 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
+++...+|.-.++..++.--..-+--|++||..|-
T Consensus 22 ~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafE 56 (158)
T 1di0_A 22 ADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYE 56 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH
Confidence 45677777777777766543332447899999887
No 39
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=25.69 E-value=1e+02 Score=18.68 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
+++...+|.-.++..++.--..-+--|++||..|-
T Consensus 23 ~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafE 57 (157)
T 2obx_A 23 ADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYE 57 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH
Confidence 45677777777777766533222346889999987
No 40
>3owr_A Uncharacterized hypothetical protein; carbohydrate metabolism, putative glycoside hydrolase, IG-LI structural genomics; HET: PG4; 1.81A {Bacteroides fragilis} PDB: 3p69_A
Probab=25.23 E-value=37 Score=20.18 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=14.5
Q ss_pred CcEEEEeCC---CCCHHHHH
Q psy3998 80 SEAVITVPA---YFNDSQRQ 96 (102)
Q Consensus 80 ~~~VitVP~---~f~~~qr~ 96 (102)
-.|.||||+ .|++..|.
T Consensus 55 I~~~vtvp~a~~~Ft~~vr~ 74 (134)
T 3owr_A 55 ATAVFTIPAAGGKFTEAERA 74 (134)
T ss_dssp EEEEEECCCCBTTBCHHHHT
T ss_pred EEEEEEcccccCcchhhhhc
Confidence 358899999 89999887
No 41
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=25.21 E-value=69 Score=15.64 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=14.0
Q ss_pred EEEeCCCCCHHHHHHHHHh
Q psy3998 83 VITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 83 VitVP~~f~~~qr~~~~~A 101 (102)
-|.+....+..|++.+.++
T Consensus 4 ~I~~~~Grs~eqk~~L~~~ 22 (65)
T 3ry0_A 4 RVTLLEGRSPQEVAALGEA 22 (65)
T ss_dssp EEEEESCCCHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHH
Confidence 4566677888998887664
No 42
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=24.81 E-value=1e+02 Score=17.40 Aligned_cols=27 Identities=11% Similarity=-0.042 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHhCCccCcEEEE
Q psy3998 59 ISSMVLTKMREIAEVYLGGKVSEAVIT 85 (102)
Q Consensus 59 v~~~il~~l~~~ae~~~~~~~~~~Vit 85 (102)
.+..+|+.....|+...|.+..+++|+
T Consensus 46 ~v~klL~sA~aNAe~n~gld~d~L~I~ 72 (110)
T 1i4j_A 46 FVAKVLESAAANAVNNHDALEDRLYVK 72 (110)
T ss_dssp HHHHHHHHHHHHHHHTSCCCGGGEEEE
T ss_pred HHHHHHHHHHHhHHHhcCCChhheEEE
Confidence 444455555666776668888888775
No 43
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=24.11 E-value=29 Score=21.09 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=11.3
Q ss_pred ccchhhcCCC-CCCHHHH
Q psy3998 8 FDAKRLIGRK-FEDQKIQ 24 (102)
Q Consensus 8 ~~~KrllG~~-~~~~~v~ 24 (102)
.++|+|||+. ++..++.
T Consensus 81 l~~khlLGRap~~q~Ei~ 98 (148)
T 3nph_B 81 LNYKHLLGRAPYDQSEIA 98 (148)
T ss_dssp HHHHHHTSSCCSSHHHHH
T ss_pred HHhhhhcCCCCCCHHHHH
Confidence 4689999995 4444443
No 44
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.91 E-value=32 Score=16.02 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=8.4
Q ss_pred eeechhhhHHH
Q psy3998 52 KKFAPEEISSM 62 (102)
Q Consensus 52 ~~~s~~ev~~~ 62 (102)
.-|||||+++.
T Consensus 15 egfspeelaal 25 (48)
T 1g6u_A 15 EGFSPEELAAL 25 (48)
T ss_dssp TTCSHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 45899998774
No 45
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=23.86 E-value=28 Score=21.16 Aligned_cols=17 Identities=29% Similarity=0.687 Sum_probs=11.5
Q ss_pred ccchhhcCCC-CCCHHHH
Q psy3998 8 FDAKRLIGRK-FEDQKIQ 24 (102)
Q Consensus 8 ~~~KrllG~~-~~~~~v~ 24 (102)
.++|+|||+. ++..++.
T Consensus 93 l~~khlLGRap~~~~E~~ 110 (148)
T 3ohw_B 93 MGTKHFLGRAPLNQKEIQ 110 (148)
T ss_dssp HHHHHHTSSCCSCHHHHH
T ss_pred HHhhhhcCCCCCCHHHHH
Confidence 4689999996 4444443
No 46
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=23.77 E-value=28 Score=21.17 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=12.0
Q ss_pred ccchhhcCCC-CCCHHHHH
Q psy3998 8 FDAKRLIGRK-FEDQKIQE 25 (102)
Q Consensus 8 ~~~KrllG~~-~~~~~v~~ 25 (102)
.++|+|||+. ++..++..
T Consensus 84 l~~khlLGRap~~q~Ei~~ 102 (149)
T 2ky4_A 84 LGTKHFLGRAPIDQAEIRK 102 (149)
T ss_dssp HHHHHHTSSCCCSHHHHHH
T ss_pred HhhhhccCCCCCCHHHHHH
Confidence 4689999995 44444443
No 47
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=23.21 E-value=27 Score=21.32 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=11.2
Q ss_pred ccchhhcCCCC-CCHHHH
Q psy3998 8 FDAKRLIGRKF-EDQKIQ 24 (102)
Q Consensus 8 ~~~KrllG~~~-~~~~v~ 24 (102)
.++|+|||+.- +..++.
T Consensus 86 l~~khlLGR~p~~~~E~~ 103 (154)
T 3pru_C 86 LNYKHLLGRAPFSEDEVI 103 (154)
T ss_dssp HHHHHHHSSCCSCHHHHH
T ss_pred HHHHHhhCCCCCCHHHHH
Confidence 46899999954 444443
No 48
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=23.15 E-value=1.9e+02 Score=22.19 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=49.6
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-C--CCC--ceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCc
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-D--GGK--PKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGK 78 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~ 78 (102)
+||+.-=..|-|.+-.+.-++.++. +|..++ | +|. ..-.+-+.| .++|..-....+++.|++.|- -..
T Consensus 327 HNTYL~g~Ql~g~ss~e~y~~aL~~--GcRcvElD~Wdg~~~~~ep~v~HG--~Tlts~i~f~~v~~~I~~~AF---~~S 399 (799)
T 2zkm_X 327 HNTYLTAGQFSGLSSAEMYRQVLLS--GCRCVELDCWKGKPPDEEPIITHG--FTMTTDIFFKEAIEAIAESAF---KTS 399 (799)
T ss_dssp SSTTBSSCSSSSCBCTHHHHHHHHT--TCCEEEEEEECCCTTCCSCEECCT--TSSCCCEEHHHHHHHHHHHTT---SSC
T ss_pred ccceeecCcccCcccHHHHHHHHHh--CCCEEEEEeecCCCCCCCCEEEeC--CcccccccHHHHHHHHHHhcc---cCC
Confidence 5777666677777655555555544 444332 1 232 111123344 333333344555566665443 445
Q ss_pred cCcEEEEeCCCC-CHHHHHHHH
Q psy3998 79 VSEAVITVPAYF-NDSQRQATK 99 (102)
Q Consensus 79 ~~~~VitVP~~f-~~~qr~~~~ 99 (102)
--.++||+-.+. +..|...+.
T Consensus 400 ~yPvIlslE~Hc~s~~qQ~~ma 421 (799)
T 2zkm_X 400 PYPIILSFENHVDSPRQQAKMA 421 (799)
T ss_dssp CSCEEEEEEECCCCHHHHHHHH
T ss_pred CCCEEEEccccCCCHHHHHHHH
Confidence 577999999999 877665543
No 49
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=23.07 E-value=1.3e+02 Score=18.33 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCcc-CcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKV-SEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~-~~~VitVP~~f~ 91 (102)
+++...+|.-.++..++..|.+. +=-|++||..|-
T Consensus 29 ~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafE 64 (159)
T 1kz1_A 29 LQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWE 64 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH
Confidence 45777777777777776235433 335899999887
No 50
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=22.35 E-value=74 Score=17.36 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=20.1
Q ss_pred hcCCceeeeCCCCceEEEEEcC-ceeeechhhh
Q psy3998 28 KHWPFTVVSDGGKPKIQVEYKG-EIKKFAPEEI 59 (102)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~ev 59 (102)
..+|..|..-++.+.+.|.|.+ ....+.+.+|
T Consensus 36 ~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~I 68 (85)
T 3qii_A 36 RFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHV 68 (85)
T ss_dssp CEEEEEEEEECTTSEEEEEETTSCEEEEEGGGE
T ss_pred CEeeEEEEEECCCCeEEEEEeCCCeEEecHHHc
Confidence 4467777766666778888864 3445555443
No 51
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=22.25 E-value=1.4e+02 Score=18.11 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHh-CCccCcEEEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYL-GGKVSEAVITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~-~~~~~~~VitVP~~f~ 91 (102)
+++...++.-.++..++.- -.+-.=-|++||..|-
T Consensus 24 ~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafE 59 (156)
T 3nq4_A 24 QFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYE 59 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHH
Confidence 4577777777777776653 2222335899999997
No 52
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=22.25 E-value=71 Score=18.10 Aligned_cols=20 Identities=10% Similarity=0.446 Sum_probs=9.6
Q ss_pred cCcEEEEeCCCCCHHHHHHHH
Q psy3998 79 VSEAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 79 ~~~~VitVP~~f~~~qr~~~~ 99 (102)
..+|+|.+.. |+..+|..+.
T Consensus 22 F~g~~Ic~sG-f~~~er~~l~ 41 (112)
T 3l46_A 22 FQDCILSFLG-FSDEEKTNME 41 (112)
T ss_dssp TTTCEECEES-CCHHHHHHHH
T ss_pred cCCeEEEEeC-CCHHHHHHHH
Confidence 4455555533 4555554443
No 53
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=22.00 E-value=56 Score=22.25 Aligned_cols=44 Identities=9% Similarity=0.031 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCcc-CcEEEEeCCCCCHHHH-HHHHHh
Q psy3998 58 EISSMVLTKMREIAEVYLGGKV-SEAVITVPAYFNDSQR-QATKDA 101 (102)
Q Consensus 58 ev~~~il~~l~~~ae~~~~~~~-~~~VitVP~~f~~~qr-~~~~~A 101 (102)
+-...++..|...+.++.+..+ -.+|+.+|......|| .+++++
T Consensus 91 ~~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~ 136 (355)
T 3js6_A 91 SFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKL 136 (355)
T ss_dssp HHHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHH
Confidence 3344444455444442212223 3799999999888887 467654
No 54
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=21.65 E-value=1.3e+02 Score=22.28 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=46.9
Q ss_pred ccccccchhhcCCCCCCHHHHHhhhcCCceeee-C--CCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 4 KNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-D--GGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 4 ~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||+..=..|-|.+-.+.-++.++. +|..++ | +|...-.+-+.| .++|..-....+++.|++.|- -..--
T Consensus 179 HNTYL~G~Ql~~~ss~e~y~~aL~~--GcRcvElD~wdg~~~ep~v~HG--~tlts~i~f~~v~~~I~~~AF---~~s~y 251 (624)
T 1djx_A 179 HNTYLLEDQLTGPSSTEAYIRALCK--GCRCLELDCWDGPNQEPIIYHG--YTFTSKILFCDVLRAIRDYAF---KASPY 251 (624)
T ss_dssp SSTTBSSCSSSCCBCHHHHHHHHHT--TCCEEEEEEECCGGGCCEECCT--TSCCCCEEHHHHHHHHHHHTT---TSCSS
T ss_pred cchhhhcCcccCCcCHHHHHHHHHh--CCcEEEEEeecCCCCCeEEecC--CcccccccHHHHHHHHHHhcc---cCCCC
Confidence 4665555555555433333444433 444332 1 232211123344 333433344455566665543 44457
Q ss_pred cEEEEeCCCCCHHHHHHHH
Q psy3998 81 EAVITVPAYFNDSQRQATK 99 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~ 99 (102)
.++||+-.+.+..|...+.
T Consensus 252 PvilslE~Hc~~~qQ~~ma 270 (624)
T 1djx_A 252 PVILSLENHCSLEQQRVMA 270 (624)
T ss_dssp CEEEEEEEECCHHHHHHHH
T ss_pred CEEEEecccCCHHHHHHHH
Confidence 7999999999988876654
No 55
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=21.60 E-value=1.1e+02 Score=16.75 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 61 ~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
...+..|.+.++++ .+..+||..|-+.+
T Consensus 37 ~~~~~~l~~li~e~---~v~~iVvGlP~~md 64 (98)
T 1iv0_A 37 EEDVEALLDFVRRE---GLGKLVVGLPLRTD 64 (98)
T ss_dssp HHHHHHHHHHHHHH---TCCEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHc---CCCEEEEeeccCCC
Confidence 34566666666654 58899999997654
No 56
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=21.57 E-value=1.4e+02 Score=22.90 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=26.3
Q ss_pred ccccchhhcCCCCCCHHHHHhhhcCCceeee
Q psy3998 6 TVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS 36 (102)
Q Consensus 6 ti~~~KrllG~~~~~~~v~~~~~~~~~~~~~ 36 (102)
....+++++|..+...++.....++.|.+..
T Consensus 407 ~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~ 437 (785)
T 1b7y_B 407 RPEYANRLLGTSYPEAEQIAILKRLGCRVEG 437 (785)
T ss_dssp CHHHHHHHHTCCCCHHHHHHHHHHTTCEEES
T ss_pred cHHHHHHHhCCCCCHHHHHHHHHHCCCeEEe
Confidence 3456789999999999999999999999853
Done!