Query psy3998
Match_columns 102
No_of_seqs 106 out of 1093
Neff 9.1
Searched_HMMs 13730
Date Fri Aug 16 22:44:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3998.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3998hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bupa1 c.55.1.1 (A:4-188) Hea 99.9 2.1E-27 1.6E-31 150.8 12.0 102 1-102 58-159 (185)
2 d1dkgd1 c.55.1.1 (D:3-185) Hea 99.9 1.1E-26 7.8E-31 147.3 10.9 98 1-102 58-156 (183)
3 d1jcea1 c.55.1.1 (A:4-140) Pro 99.3 4.4E-12 3.2E-16 75.8 5.6 52 51-102 64-115 (137)
4 d1jjcb2 a.6.1.1 (B:400-474) Do 80.2 0.78 5.7E-05 23.3 2.8 56 7-64 9-65 (75)
5 d2ja9a2 d.51.1.1 (A:152-236) R 71.9 1.5 0.00011 22.8 2.5 36 8-44 10-46 (85)
6 d1msza_ d.68.7.1 (A:) SmuBP-2 59.9 2.6 0.00019 20.4 1.9 19 83-101 19-37 (62)
7 d1nj8a1 c.51.1.1 (A:268-393) P 45.0 18 0.0013 19.3 4.1 48 26-73 62-114 (126)
8 d1qf6a1 c.51.1.1 (A:533-642) T 44.2 19 0.0014 18.7 4.2 45 26-70 54-103 (110)
9 d1yvua2 c.55.3.10 (A:315-706) 43.1 38 0.0028 21.9 6.3 47 55-101 225-271 (392)
10 d1kz1a_ c.16.1.1 (A:) Lumazine 42.3 21 0.0015 20.2 4.1 35 57-91 21-56 (150)
11 d1srva_ c.8.5.1 (A:) GroEL, A 42.1 21 0.0016 19.9 4.2 39 54-101 63-101 (145)
12 d1nyra1 c.51.1.1 (A:533-645) T 40.5 13 0.00094 19.5 2.9 44 26-69 61-109 (113)
13 d1e4ft1 c.55.1.1 (T:7-199) Cel 38.9 30 0.0022 19.6 4.7 37 53-89 43-80 (193)
14 d1g5ha1 c.51.1.1 (A:343-469) T 35.8 23 0.0017 18.9 3.6 45 26-70 65-114 (127)
15 d2oa5a1 d.362.1.1 (A:7-102) Un 33.5 31 0.0022 18.0 4.7 46 54-101 2-49 (96)
16 d2nn6g3 d.51.1.1 (G:195-274) R 30.8 15 0.0011 18.6 1.9 33 9-43 11-44 (80)
17 d2pn2a1 d.227.1.1 (A:1-132) Un 28.7 39 0.0029 17.8 6.5 54 48-101 34-111 (132)
18 d1fs1a1 a.158.1.1 (A:109-149) 27.8 4.8 0.00035 17.4 -0.3 12 56-67 5-16 (41)
19 d1sjpa2 c.8.5.1 (A:189-372) Gr 27.2 39 0.0028 19.5 3.7 28 73-101 74-101 (184)
20 d2dw4a3 d.16.1.5 (A:655-763) L 26.0 29 0.0021 17.2 2.8 21 52-72 62-82 (109)
21 d2v4jb2 d.58.36.2 (B:2-135) Di 23.8 49 0.0035 18.3 3.5 54 18-77 28-90 (134)
22 d1di0a_ c.16.1.1 (A:) Lumazine 23.3 58 0.0042 18.1 3.9 34 58-91 15-48 (148)
23 d2v5za2 d.16.1.5 (A:290-401) M 23.1 36 0.0026 17.0 2.8 21 52-72 64-84 (112)
24 d1e0na_ b.72.1.1 (A:) Hypothet 23.0 25 0.0019 13.6 1.8 13 31-43 2-14 (27)
25 d1atia1 c.51.1.1 (A:395-505) G 22.3 52 0.0038 17.0 3.5 42 26-67 54-109 (111)
26 d1vqza1 d.224.1.3 (A:242-329) 21.7 20 0.0014 18.2 1.4 39 11-64 49-87 (88)
27 d1x6va3 c.37.1.4 (A:34-228) Ad 21.1 23 0.0016 19.5 1.7 18 52-69 172-189 (195)
28 d1yd9a1 c.50.1.2 (A:6-193) His 20.8 71 0.0052 18.0 5.1 35 52-86 135-169 (188)
29 d3c7bb2 d.58.36.2 (B:4-122) Di 20.7 39 0.0028 18.3 2.6 52 20-77 17-77 (119)
30 d1tska_ g.3.7.2 (A:) Toxin ts 20.4 13 0.00093 15.2 0.3 13 5-17 12-24 (35)
No 1
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.95 E-value=2.1e-27 Score=150.81 Aligned_cols=102 Identities=76% Similarity=1.217 Sum_probs=97.0
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCccC
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVS 80 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~~ 80 (102)
+||+++++++|||||++++|+.++...+.+++.++.+++.....+...++.+.++|+||++|+|++|++.|+.++|.++.
T Consensus 58 ~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~ 137 (185)
T d1bupa1 58 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVT 137 (185)
T ss_dssp TCGGGEECCHHHHTTCCTTCHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cCcccchhHHHHHhCCCCccHHHHHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 58999999999999999999999999999999988888888888888888899999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHHhC
Q psy3998 81 EAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 81 ~~VitVP~~f~~~qr~~~~~Aa 102 (102)
++|||||++|++.||+++++||
T Consensus 138 ~~VitvPa~f~~~qr~~~~~Aa 159 (185)
T d1bupa1 138 NAVVTVPAYFNDSQRQATKDAG 159 (185)
T ss_dssp EEEEEECTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999999986
No 2
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Probab=99.94 E-value=1.1e-26 Score=147.32 Aligned_cols=98 Identities=57% Similarity=0.913 Sum_probs=87.9
Q ss_pred CCcccccccchhhcCCCCCCHHHHHhhhcCCceeee-CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCCcc
Q psy3998 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKV 79 (102)
Q Consensus 1 ~np~nti~~~KrllG~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~~~ 79 (102)
+||+|+++++|||||+.++|+.++.....+||+++. ++|...+. .. .+.++|++|++++|++|++.|++++|.++
T Consensus 58 ~~p~~~i~~~KrllG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~s~~~l~a~~L~~l~~~a~~~~~~~~ 133 (183)
T d1dkgd1 58 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVE--VK--GQKMAPPQISAEVLKKMKKTAEDYLGEPV 133 (183)
T ss_dssp TCGGGEEECGGGTTTCBSCSHHHHHHTTTCSSEEEECSSSBEEEE--ET--TEEECHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCCccEEeeeHHHcCCCCCcHHHHhhhhcCCEEEEEcCCCcEEEE--EC--CEEECHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999998999999876 45554433 33 37799999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 80 SEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 80 ~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
.+||||||++|++.||+++++||
T Consensus 134 ~~~VitVPa~f~~~~r~~l~~Aa 156 (183)
T d1dkgd1 134 TEAVITVPAYFNDAQRQATKDAG 156 (183)
T ss_dssp CEEEECBCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999999996
No 3
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}
Probab=99.25 E-value=4.4e-12 Score=75.85 Aligned_cols=52 Identities=25% Similarity=0.183 Sum_probs=48.9
Q ss_pred eeeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHhC
Q psy3998 51 IKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102 (102)
Q Consensus 51 ~~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~Aa 102 (102)
...+++.++..+++.+++..++...+.++.++|||||++|++.||+++++||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa 115 (137)
T d1jcea1 64 DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG 115 (137)
T ss_dssp TTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999986
No 4
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=80.23 E-value=0.78 Score=23.26 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=36.0
Q ss_pred cccchhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCce-eeechhhhHHHHH
Q psy3998 7 VFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEI-KKFAPEEISSMVL 64 (102)
Q Consensus 7 i~~~KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~ev~~~il 64 (102)
...+++++|..++..++.....++.|++..+++. +.+..-... -...+++++-.++
T Consensus 9 ~~~i~~~lG~~i~~~~i~~~L~~Lg~~~~~~~~~--~~V~vPs~R~Di~~~~DliEEi~ 65 (75)
T d1jjcb2 9 PEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPT--YRVTPPSHRLDLRLEEDLVEEVA 65 (75)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHTTCEEECSSSS--EEEECCTTCTTCCSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCceEecCCc--EEEecchhccccCCcchHHHHHH
Confidence 3467899999999999999999999996544332 334321111 1235566665554
No 5
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=71.86 E-value=1.5 Score=22.81 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=25.5
Q ss_pred ccchhhcCCCCCCHHHHHhhhcCCceee-eCCCCceEE
Q psy3998 8 FDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQ 44 (102)
Q Consensus 8 ~~~KrllG~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~ 44 (102)
....||||.+ +.+.++...+..+|++. ..||+.++.
T Consensus 10 ~~~rrll~~~-~~~ml~~l~~~~~~eI~VG~NGrIWi~ 46 (85)
T d2ja9a2 10 NFARQLLFNN-DFPLLKVLAAHTKFEVAIGLNGKIWVK 46 (85)
T ss_dssp HHHHHHHHCT-TCCHHHHHHTTCCCEEEEETTTEEEEE
T ss_pred HHHHHHHcCC-CChHHHHHHhhcCceEEEecCcEEEEE
Confidence 3456899886 33467778888999985 578876443
No 6
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.94 E-value=2.6 Score=20.42 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=15.6
Q ss_pred EEEeCCCCCHHHHHHHHHh
Q psy3998 83 VITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 83 VitVP~~f~~~qr~~~~~A 101 (102)
-+..|+.++..||..+-+.
T Consensus 19 ~~~f~p~m~~~~R~~vH~l 37 (62)
T d1msza_ 19 QLEFPPSLNSHDRLRVHQI 37 (62)
T ss_dssp EEEECTTCCSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHH
Confidence 4778999999999987654
No 7
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=45.02 E-value=18 Score=19.34 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=30.2
Q ss_pred hhhcCCceeee-----CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHH
Q psy3998 26 DIKHWPFTVVS-----DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEV 73 (102)
Q Consensus 26 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~ 73 (102)
.....||.++. .+|...+.-...++...++.+++...+-+.|.++-++
T Consensus 62 ~~~giP~~iiiG~ke~~~~~v~lr~R~~~~~~~v~~~~l~~~i~~~l~~~~~~ 114 (126)
T d1nj8a1 62 EIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMEN 114 (126)
T ss_dssp HHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhCCEEEEEEcCCCceEEEcHHHHHHHHHHHHHHHHHH
Confidence 45678988753 2344444333456677888888888777666655443
No 8
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.24 E-value=19 Score=18.70 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=28.7
Q ss_pred hhhcCCceeee-CC--CCceEEEEE--cCceeeechhhhHHHHHHHHHHH
Q psy3998 26 DIKHWPFTVVS-DG--GKPKIQVEY--KGEIKKFAPEEISSMVLTKMREI 70 (102)
Q Consensus 26 ~~~~~~~~~~~-~~--~~~~~~~~~--~~~~~~~s~~ev~~~il~~l~~~ 70 (102)
.....||-++- +. ....+.+.. +++...++.++++..+.+.+++.
T Consensus 54 ~~~g~p~~iiiG~~E~~~~~V~ir~~~~~~q~~i~~~e~i~~l~~~i~~r 103 (110)
T d1qf6a1 54 TLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 103 (110)
T ss_dssp HHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHTT
T ss_pred HHcCCCEEEEECchHHhCCEEEEEECCCCceEEeeHHHHHHHHHHHHHHH
Confidence 45668888653 22 223445543 55667899999888887777654
No 9
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
Probab=43.10 E-value=38 Score=21.92 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=40.0
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 55 APEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 55 s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
.-++++..+++.+.+..++..|.....++|--..-+...+..++++|
T Consensus 225 ~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi~RdG~~~~~El~~i~~a 271 (392)
T d1yvua2 225 FGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLYRDEVAAFKKY 271 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 44677888888888888888788889999999999999999988876
No 10
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=42.27 E-value=21 Score=20.17 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCccCcE-EEEeCCCCC
Q psy3998 57 EEISSMVLTKMREIAEVYLGGKVSEA-VITVPAYFN 91 (102)
Q Consensus 57 ~ev~~~il~~l~~~ae~~~~~~~~~~-VitVP~~f~ 91 (102)
.+++..+++..++...+..|.....+ ++.||..|-
T Consensus 21 ~~i~~~L~~ga~~~l~~~~~~~~~~i~v~~VPGa~E 56 (150)
T d1kz1a_ 21 LQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWE 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccEEEEeCCHHH
Confidence 45667777777776666556655554 789999887
No 11
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]}
Probab=42.07 E-value=21 Score=19.93 Aligned_cols=39 Identities=28% Similarity=0.535 Sum_probs=25.7
Q ss_pred echhhhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 54 FAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 54 ~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
++.+-+.++++. .....++-|+|..|. |.+.+|+.+.|-
T Consensus 63 i~~eaL~~Lv~N--------~~~g~l~v~aVkaP~-fG~~r~~~L~Dl 101 (145)
T d1srva_ 63 VEGEALATLVVN--------KLRGTLSVAAVKAPG-FGDRRKEMLKDI 101 (145)
T ss_dssp ECHHHHHHHHHH--------HHTTSCCEEEEECCS-SHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH--------HhcCceEEEEEeCCC-ccHHHHHHHhhh
Confidence 444545555443 345567888898888 888888877663
No 12
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=40.48 E-value=13 Score=19.53 Aligned_cols=44 Identities=14% Similarity=0.319 Sum_probs=28.0
Q ss_pred hhhcCCceeee-CC--CCceEEEEE--cCceeeechhhhHHHHHHHHHH
Q psy3998 26 DIKHWPFTVVS-DG--GKPKIQVEY--KGEIKKFAPEEISSMVLTKMRE 69 (102)
Q Consensus 26 ~~~~~~~~~~~-~~--~~~~~~~~~--~~~~~~~s~~ev~~~il~~l~~ 69 (102)
.....||.++. +. ....+.+.. .++...++.++++..+...|+.
T Consensus 61 ~~~g~p~~iiiG~~E~~~~~v~vr~~~~~~q~~v~~~e~i~~l~~ei~~ 109 (113)
T d1nyra1 61 QMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRL 109 (113)
T ss_dssp HHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHHT
T ss_pred HHhCceEEEEEccccccCCEEEEEECCCCcEEEEeHHHHHHHHHHHHHH
Confidence 45668888652 11 223455543 4566788999998888877753
No 13
>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}
Probab=38.89 E-value=30 Score=19.64 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=28.9
Q ss_pred eechhhhHHHHHHHHHHHHHHHhCCccC-cEEEEeCCC
Q psy3998 53 KFAPEEISSMVLTKMREIAEVYLGGKVS-EAVITVPAY 89 (102)
Q Consensus 53 ~~s~~ev~~~il~~l~~~ae~~~~~~~~-~~VitVP~~ 89 (102)
.++-.+-++..++.+.+.||+..|..++ .++++++..
T Consensus 43 ~I~d~~~~~~~I~~~I~~aE~~a~~~i~~~v~v~~~~~ 80 (193)
T d1e4ft1 43 EIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSV 80 (193)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHTSCCCSCEEEEECCT
T ss_pred eEEeHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEcCc
Confidence 4455567888899999999999999985 677777643
No 14
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.77 E-value=23 Score=18.91 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=30.3
Q ss_pred hhhcCCceeeeC-C--CCceEEEEE--cCceeeechhhhHHHHHHHHHHH
Q psy3998 26 DIKHWPFTVVSD-G--GKPKIQVEY--KGEIKKFAPEEISSMVLTKMREI 70 (102)
Q Consensus 26 ~~~~~~~~~~~~-~--~~~~~~~~~--~~~~~~~s~~ev~~~il~~l~~~ 70 (102)
.+...||.++-. + ....+.+.. .++...++.+++...+.+.|...
T Consensus 65 ~~~giP~~iiiG~~e~~~~~V~ir~r~t~~q~~i~i~~l~~~l~~~l~~~ 114 (127)
T d1g5ha1 65 DEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASA 114 (127)
T ss_dssp HHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHH
T ss_pred HHhCCcEEEEEcCCccccCEEEEEECCCCceEEEEHHHHHHHHHHHHHcc
Confidence 556789887532 1 223445543 56777899999999988887764
No 15
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=33.55 E-value=31 Score=18.02 Aligned_cols=46 Identities=22% Similarity=0.088 Sum_probs=23.6
Q ss_pred echhhhHHHHHHHHHHHHHHHhCCccCc--EEEEeCCCCCHHHHHHHHHh
Q psy3998 54 FAPEEISSMVLTKMREIAEVYLGGKVSE--AVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 54 ~s~~ev~~~il~~l~~~ae~~~~~~~~~--~VitVP~~f~~~qr~~~~~A 101 (102)
.|+||+.+.+-+==.+. +.+...++. -+-+=|.-.+..||+++..+
T Consensus 2 ~t~EeLaaeL~rL~~EN--k~LKkkl~~~~~~~~~d~~LT~~qke~~I~s 49 (96)
T d2oa5a1 2 KTYEEMVKEVERLKLEN--KTLKQKVKSSGAVSSDDSILTAAKRESIIVS 49 (96)
T ss_dssp SSHHHHHHHHHHHHHHH--HHHHHTC---------CCBCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--HHHHHHHhcCCCCCCCCccCCHHHHHHHHHH
Confidence 47788887764322211 112222222 23356788899999998765
No 16
>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.83 E-value=15 Score=18.61 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=23.1
Q ss_pred cchhhcCCCCCCHHHHHhhhcCCceee-eCCCCceE
Q psy3998 9 DAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKI 43 (102)
Q Consensus 9 ~~KrllG~~~~~~~v~~~~~~~~~~~~-~~~~~~~~ 43 (102)
...+|++. +.+.++...+++||++. --||+.++
T Consensus 11 laR~Ll~~--~~~vL~~Lgk~~~FEIavG~NGrVWv 44 (80)
T d2nn6g3 11 LIRKLLAP--DCEIIQEVGKLYPLEIVFGMNGRIWV 44 (80)
T ss_dssp HHHHHHCT--TCSHHHHTTCSSSCCCEEETTTEEEE
T ss_pred HHHHHhcC--CCHHHHHHhhhCCeEEEEecCCeEEE
Confidence 44577754 34677888888999984 47887644
No 17
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=28.74 E-value=39 Score=17.76 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=36.5
Q ss_pred cCceeeechhhhHHHHHHHHHHHHH----HHhCCccC--------------------cEEEEeCCCCCHHHHHHHHHh
Q psy3998 48 KGEIKKFAPEEISSMVLTKMREIAE----VYLGGKVS--------------------EAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 48 ~~~~~~~s~~ev~~~il~~l~~~ae----~~~~~~~~--------------------~~VitVP~~f~~~qr~~~~~A 101 (102)
.|.+.-++|.|++..=|..+....- +..|.++. .+-|++|...++.+++.+..|
T Consensus 34 gG~~~g~~P~eLllaala~C~~~~~~~~a~~~gi~~~~~~v~v~~~~~~~~~~~~~i~i~i~i~~~~~~e~~~~l~~~ 111 (132)
T d2pn2a1 34 QGKGEAFSPTDLLATSLASCMLTIIGIKARDMEIDIAGTTAEVTKVMAADPRRVSEVHIAITFNQELDDKTQKIFYNT 111 (132)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEETTTTEEEEEEEEEECSSCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEEEecccccceEEEEEEEcCCCCCHHHHHHHHHH
Confidence 3566788999998776666554322 22243322 378889999999998887765
No 18
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.77 E-value=4.8 Score=17.38 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHH
Q psy3998 56 PEEISSMVLTKM 67 (102)
Q Consensus 56 ~~ev~~~il~~l 67 (102)
|+|+...||.+|
T Consensus 5 P~eil~~If~~L 16 (41)
T d1fs1a1 5 PDELLLGIFSCL 16 (41)
T ss_dssp CHHHHHHHHTTS
T ss_pred CHHHHHHHHHcC
Confidence 677888888765
No 19
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=27.22 E-value=39 Score=19.50 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=20.6
Q ss_pred HHhCCccCcEEEEeCCCCCHHHHHHHHHh
Q psy3998 73 VYLGGKVSEAVITVPAYFNDSQRQATKDA 101 (102)
Q Consensus 73 ~~~~~~~~~~VitVP~~f~~~qr~~~~~A 101 (102)
......++-|+|..|. |.+.++..+.|-
T Consensus 74 N~~~g~l~v~aVkaPg-fG~~r~~~L~Dl 101 (184)
T d1sjpa2 74 NKIRGTFKSVAVKAPG-FGDRRKAMLQDM 101 (184)
T ss_dssp HHHTTSSCCEEEECSS-CHHHHHHHHHHH
T ss_pred HHhcCchheecccCCC-CCcchHHHHHHH
Confidence 3445667889999996 888888777653
No 20
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.01 E-value=29 Score=17.18 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=17.4
Q ss_pred eeechhhhHHHHHHHHHHHHH
Q psy3998 52 KKFAPEEISSMVLTKMREIAE 72 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae 72 (102)
..++.+++...+|..|+++.-
T Consensus 62 ~~l~~~~~~~~~l~~L~~~~~ 82 (109)
T d2dw4a3 62 ENISDDVIVGRCLAILKGIFG 82 (109)
T ss_dssp TTSCHHHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHHHhC
Confidence 357899999999999987654
No 21
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=23.78 E-value=49 Score=18.26 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=32.4
Q ss_pred CCCHHHHHhhhcCCceeee---------CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCC
Q psy3998 18 FEDQKIQEDIKHWPFTVVS---------DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGG 77 (102)
Q Consensus 18 ~~~~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~ 77 (102)
|--+.+++-.-+|.++-.. ..|...+.++.. +|--+++..|+.|.++|+++-..
T Consensus 28 ~lppvi~~nyGkw~yhe~~~pGvl~hv~esGd~~~tVRv~------~~RllS~~~lR~iadIAdkYg~G 90 (134)
T d2v4jb2 28 FFPPVIAKNFGSWLYHEILEPGVLMHVAESGDKVYTVRVG------AARLMSITHIREMCDIADKYCGG 90 (134)
T ss_dssp TCCHHHHHHTTCEEEEEEEETTEEEEEETTSCEEEEEEEC------CCSEEEHHHHHHHHHHHHHHSTT
T ss_pred hCCHHHHhcCCCceeeeecCCcEEEEecCCCCEEEEEECC------CCcccCHHHHHHHHHHHHHHCCC
Confidence 3346666655667666322 234444555543 23334567789999999998653
No 22
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=23.31 E-value=58 Score=18.08 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCccCcEEEEeCCCCC
Q psy3998 58 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFN 91 (102)
Q Consensus 58 ev~~~il~~l~~~ae~~~~~~~~~~VitVP~~f~ 91 (102)
+++..++....+..++.......--++.||..|-
T Consensus 15 ~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~E 48 (148)
T d1di0a_ 15 DIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYE 48 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCcceeEEEEcCChhh
Confidence 4555556555554444322222346889999886
No 23
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.13 E-value=36 Score=17.00 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=18.0
Q ss_pred eeechhhhHHHHHHHHHHHHH
Q psy3998 52 KKFAPEEISSMVLTKMREIAE 72 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae 72 (102)
..++.+++...+|..|+.+.-
T Consensus 64 ~~ls~~e~~~~~l~~L~~~~g 84 (112)
T d2v5za2 64 ARLTKEERLKKLCELYAKVLG 84 (112)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHhC
Confidence 457999999999999998763
No 24
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.04 E-value=25 Score=13.65 Aligned_cols=13 Identities=15% Similarity=0.644 Sum_probs=9.0
Q ss_pred CceeeeCCCCceE
Q psy3998 31 PFTVVSDGGKPKI 43 (102)
Q Consensus 31 ~~~~~~~~~~~~~ 43 (102)
..+++.+||++.+
T Consensus 2 gweiihengrpmy 14 (27)
T d1e0na_ 2 GWEIIHENGRPLY 14 (27)
T ss_dssp CEEEEESSSSEEE
T ss_pred CceeeecCCceee
Confidence 3567788888754
No 25
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=22.34 E-value=52 Score=16.95 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=27.3
Q ss_pred hhhcCCceeee-----CCCC-------ceEEEEE--cCceeeechhhhHHHHHHHH
Q psy3998 26 DIKHWPFTVVS-----DGGK-------PKIQVEY--KGEIKKFAPEEISSMVLTKM 67 (102)
Q Consensus 26 ~~~~~~~~~~~-----~~~~-------~~~~~~~--~~~~~~~s~~ev~~~il~~l 67 (102)
.+...||.++. .+|. ..+.+.. .++...++.+|+...+-..|
T Consensus 54 ~~~gvP~~iiIG~kel~~g~~~~~~~~ntV~ir~Rd~~~~~~v~i~e~~~~l~~~l 109 (111)
T d1atia1 54 DEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERL 109 (111)
T ss_dssp HHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECcHHhhcccccccccCceEEEEEcCCCceEEEEHHHHHHHHHHHh
Confidence 56778998752 2332 2466654 44566789999988776655
No 26
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=21.73 E-value=20 Score=18.15 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=23.3
Q ss_pred hhhcCCCCCCHHHHHhhhcCCceeeeCCCCceEEEEEcCceeeechhhhHHHHH
Q psy3998 11 KRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVL 64 (102)
Q Consensus 11 KrllG~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ev~~~il 64 (102)
+.|.|..|+...+.......... .--..++++|++..++
T Consensus 49 ~~L~G~~y~~~~i~~~L~~~~~~---------------~Yf~~i~~ee~~~li~ 87 (88)
T d1vqza1 49 DVLRGVKYEREDVLKALKTIDIT---------------RYFAGISREEIAEAVV 87 (88)
T ss_dssp HHHTTCBSSHHHHHHHHTTSCGG---------------GTSTTCCHHHHHHHHC
T ss_pred HHHcCCCCCHHHHHHHHHhCCHH---------------HHhCCCCHHHHHHHhc
Confidence 35788888777776655443222 0112468888887765
No 27
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.05 E-value=23 Score=19.53 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=15.2
Q ss_pred eeechhhhHHHHHHHHHH
Q psy3998 52 KKFAPEEISSMVLTKMRE 69 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~ 69 (102)
...|++|++..|++.|++
T Consensus 172 ~~~s~ee~~~~Il~~l~~ 189 (195)
T d1x6va3 172 DSCDVNDCVQQVVELLQE 189 (195)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 346899999999999875
No 28
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.83 E-value=71 Score=17.98 Aligned_cols=35 Identities=6% Similarity=0.206 Sum_probs=23.8
Q ss_pred eeechhhhHHHHHHHHHHHHHHHhCCccCcEEEEe
Q psy3998 52 KKFAPEEISSMVLTKMREIAEVYLGGKVSEAVITV 86 (102)
Q Consensus 52 ~~~s~~ev~~~il~~l~~~ae~~~~~~~~~~VitV 86 (102)
-.+++++++..+++.+++-.++..+..++++++.+
T Consensus 135 ~g~p~~~~a~~~~~ai~~fl~~~~~~~l~~V~~v~ 169 (188)
T d1yd9a1 135 NGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVL 169 (188)
T ss_dssp TCBCHHHHHHHHHHHHHHHHTTCTTCCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCccEEEEEe
Confidence 45677777777777777665554455677777765
No 29
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.69 E-value=39 Score=18.28 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=31.8
Q ss_pred CHHHHHhhhcCCceeee---------CCCCceEEEEEcCceeeechhhhHHHHHHHHHHHHHHHhCC
Q psy3998 20 DQKIQEDIKHWPFTVVS---------DGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGG 77 (102)
Q Consensus 20 ~~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~~ev~~~il~~l~~~ae~~~~~ 77 (102)
.+.+++..-+|.|+-+. +.|.-.+.++.. +|--+++..|+.|.++|+++-..
T Consensus 17 ppvi~~nyGkw~yhe~~~pgvl~hv~esg~~~~tVR~g------~prl~S~~~iR~iadIAdKY~~G 77 (119)
T d3c7bb2 17 HPVIAKNYGKWKYHEVVKPGVIKRVAESGDVIYVVRFG------TPRLLSIYTVRELCDIADKYSDG 77 (119)
T ss_dssp CHHHHHHTTCEEEEEEEETTEEEEEETTSCEEEEEEEC------CCSEEEHHHHHHHHHHHHHHSTT
T ss_pred CHHHHhcCCCceecccCCCcEEEEEcCCCCEEEEEecC------CcccccHHHHHHHHHHHHHhCcc
Confidence 35566555667776332 233334444443 34445667899999999998653
No 30
>d1tska_ g.3.7.2 (A:) Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxId: 6887]}
Probab=20.42 E-value=13 Score=15.18 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=9.2
Q ss_pred cccccchhhcCCC
Q psy3998 5 NTVFDAKRLIGRK 17 (102)
Q Consensus 5 nti~~~KrllG~~ 17 (102)
+++...|.|+|+.
T Consensus 12 dcysackklvgka 24 (35)
T d1tska_ 12 DCYSACKKLVGKA 24 (35)
T ss_dssp SSHHHHHHHTSSS
T ss_pred cHHHHHHHHhhhc
Confidence 4566778888874
Done!