RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3998
(102 letters)
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 230 bits (588), Expect = 1e-76
Identities = 85/102 (83%), Positives = 91/102 (89%)
Query: 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
MNP NT+FDAKRLIGRKFED +Q D+KHWPF VVS+GGKPK+QVEYKGE K F PEEIS
Sbjct: 80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139
Query: 61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
SMVLTKM+EIAE YLGGKV AVITVPAYFNDSQRQATKDAG
Sbjct: 140 SMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAG 181
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 229 bits (587), Expect = 1e-76
Identities = 67/102 (65%), Positives = 82/102 (80%)
Query: 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
NP+NT+FD KRLIG K+ D+ +Q+DIKH PF VV+ GKP ++V KGE K F PEEIS
Sbjct: 75 ANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEIS 134
Query: 61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
M+L KM++IAE YLG KV+ AV+TVPAYFND+QRQATKDAG
Sbjct: 135 GMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAG 176
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 227 bits (582), Expect = 3e-74
Identities = 78/102 (76%), Positives = 89/102 (87%)
Query: 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
MNP NTVFDAKRLIGR+F+D +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 61 MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 120
Query: 61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
SMVLTKM+EIAE YLG V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 121 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 207 bits (530), Expect = 1e-65
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS-DGGKPKIQVEYKGEIKKFAPEEI 59
N KNTV + KR+IG + +++ KH+ +V D K +V + GE F+ ++
Sbjct: 59 SNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 60 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
++M + K+++ + +++ I VP ++ + QR DA
Sbjct: 119 AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 161
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 158 bits (401), Expect = 6e-49
Identities = 58/103 (56%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 59
NP+NT+F KRLIGR+F+D+++Q D+ PF ++ +D G ++V KG +K AP +I
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQI 115
Query: 60 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
S+ VL KM++ AE YLG V+EAVITVPAYFND+QRQATKDAG
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 151 bits (384), Expect = 6e-45
Identities = 56/103 (54%), Positives = 77/103 (74%), Gaps = 5/103 (4%)
Query: 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 59
NP+NT+F KRLIGR+F+D+++Q D+ PF ++ +D G ++V+ + K AP +I
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQI 115
Query: 60 SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
S+ VL KM++ AE YLG V+EAVITVPAYFND+QRQATKDAG
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 114 bits (289), Expect = 7e-32
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 28/102 (27%)
Query: 1 MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
NP NT+ KR +G ++ VE +G K++ P+EIS
Sbjct: 59 TNP-NTIISIKRHMGTDYK-------------------------VEIEG--KQYTPQEIS 90
Query: 61 SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
+++L ++ AE YLG V+ AVITVPAYFND+QRQATKDAG
Sbjct: 91 AIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAG 132
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 36.4 bits (85), Expect = 6e-04
Identities = 6/45 (13%), Positives = 17/45 (37%)
Query: 58 EISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
+ ++ +++ E LG ++ +A +P +A
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVV 115
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 34.7 bits (79), Expect = 0.002
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 42 KIQVEYKGEIKKFAPEEISSMVLTKMREIAEVYLGGKVSEAVIT-VPAYFNDSQRQATKD 100
+ + A +E ++ + E G V + + P D + +A K+
Sbjct: 83 GNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKE 142
Query: 101 A 101
A
Sbjct: 143 A 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.013
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 17 KFEDQKIQEDIKHW--PFTVVSDGG-----KPKIQV------EYKGEIKKFAPEEISSMV 63
+F +QKI+ D W ++++ KP I I F P+ +++
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 64 LTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATK 99
+K ++ + L + A F ++ +Q +
Sbjct: 561 CSKYTDLLRIALMAEDE-------AIFEEAHKQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.29
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 21/51 (41%)
Query: 19 EDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMRE 69
E Q ++ K+Q +K +A + ++ + E
Sbjct: 18 EKQALK-----------------KLQ----ASLKLYADDSAPALAIKATME 47
>1j8b_A YBAB; hypothetical protein, structural genomics, structure
function project, S2F, unknown function; HET: MSE;
1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB:
1pug_A
Length = 112
Score = 25.7 bits (57), Expect = 1.9
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 21 QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAE 72
QK+QE+I T S G KI + ++ +I ++ +E+ E
Sbjct: 25 QKMQEEIAQLEVTGESGAGLVKITINGAHNCRRI---DIDPSLMEDDKEMLE 73
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 25.1 bits (54), Expect = 5.5
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 13 LIGRKFEDQKIQEDIK 28
L RK+ D+++++DI
Sbjct: 327 LSERKYSDEELRQDIS 342
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein
structure initiative, southeast COLL for structural
genomics, secsg; HET: MSE; 1.80A {Clostridium
thermocellum}
Length = 143
Score = 24.7 bits (54), Expect = 5.6
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 21 QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKK 53
+++QE++K + GG + + +IK+
Sbjct: 58 ERVQEELKEKTVEASAGGGAVTVVATGRKDIKE 90
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural
genomics, P protein structure initiative; HET: MSE;
1.78A {Helicobacter pylori}
Length = 99
Score = 24.2 bits (53), Expect = 5.8
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 21 QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKK 53
+++E K T S GG + GE+
Sbjct: 20 SQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVD 52
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome,
RNA, X-RAY crystallography; 2.60A {Methanocaldococcus
jannaschii} SCOP: d.140.1.1
Length = 130
Score = 24.0 bits (53), Expect = 7.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 32 FTVVSDGGKPKIQVEYKGEIKK 53
F + DG +VE G+I K
Sbjct: 50 FEFIEDGRAGIFKVELIGKINK 71
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase
unready state, oxidoreductase; 1.83A {Desulfovibrio
fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Length = 549
Score = 24.4 bits (52), Expect = 9.0
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 16 RKFEDQKIQEDIKHWPFTVVSDGGKPKIQV 45
+ I ED+K+ + DG P V
Sbjct: 325 DNVDLGAIYEDVKYSWYAPGGDGKHPYDGV 354
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 24.2 bits (53), Expect = 9.3
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 35 VSDGGKPKIQVEYKGEIKKFAPEEISSMVL 64
+SD + V+ +GE+ E + L
Sbjct: 341 LSDELPVSLSVQVRGELAAEEVEVLRLSAL 370
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.375
Gapped
Lambda K H
0.267 0.0835 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,575,113
Number of extensions: 85965
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 27
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.2 bits)