RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3998
         (102 letters)



>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score =  137 bits (347), Expect = 1e-43
 Identities = 78/102 (76%), Positives = 89/102 (87%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEIS 60
           MNP NTVFDAKRLIGR+F+D  +Q D+KHWPF VV+D G+PK+QVEYKGE K F PEE+S
Sbjct: 58  MNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVS 117

Query: 61  SMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           SMVLTKM+EIAE YLG  V+ AV+TVPAYFNDSQRQATKDAG
Sbjct: 118 SMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159


>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 183

 Score =  124 bits (312), Expect = 3e-38
 Identities = 56/103 (54%), Positives = 77/103 (74%), Gaps = 5/103 (4%)

Query: 1   MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVV-SDGGKPKIQVEYKGEIKKFAPEEI 59
            NP+NT+F  KRLIGR+F+D+++Q D+   PF ++ +D G   ++V+ +    K AP +I
Sbjct: 58  TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQ----KMAPPQI 113

Query: 60  SSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
           S+ VL KM++ AE YLG  V+EAVITVPAYFND+QRQATKDAG
Sbjct: 114 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 156


>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
           {Thermotoga maritima [TaxId: 2336]}
          Length = 137

 Score = 46.7 bits (110), Expect = 2e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 53  KFAPEEISSMVLTKMREIAEVYLGGKVSEAVITVPAYFNDSQRQATKDAG 102
             A   ++ ++L      A+  +       VI VP    D +R+A  DAG
Sbjct: 66  VIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG 115


>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 92

 Score = 26.5 bits (59), Expect = 0.29
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 21 QKIQEDIKHWPFTVVSDGGKPKIQVEYKGEIKKFAPEEISSMVLTKMREIAE 72
          QK+QE+I     T  S  G  KI +      ++    +I   ++   +E+ E
Sbjct: 16 QKMQEEIAQLEVTGESGAGLVKITINGAHNCRRI---DIDPSLMEDDKEMLE 64


>d1ytqa1 b.11.1.1 (A:14-103) beta-Crystallin {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 90

 Score = 25.5 bits (56), Expect = 0.75
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 1  MNPKNTVFDAKRLIGRKFEDQKIQEDIKHWPFTVVS 36
          +NPK  +F+ +   G   E      ++K        
Sbjct: 1  LNPKIIIFEQENFQGHSHELNGPCPNLKETGVEKAG 36


>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 24.4 bits (53), Expect = 3.5
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 13  LIGRKFEDQKIQEDIKHWP 31
            + RKF   K   D K  P
Sbjct: 107 KLLRKFRKPKTFGDYKVIP 125


>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score = 23.3 bits (50), Expect = 7.9
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 42  KIQVEYKGEIKKFAPEEISSMVLTKMREIAE 72
           K+ V  + ++  F P      V  K  E  E
Sbjct: 256 KVSVTARDDVPFFGPPLPDPAVFRKGPEFQE 286


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,025
Number of extensions: 16756
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 14
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (21.9 bits)