BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain-containing protein 2,
mitochondrial OS=Mus musculus GN=Chchd2 PE=1 SV=1
Length = 153
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 67/95 (70%), Gaps = 9/95 (9%)
Query: 58 APMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPA 117
+P AAP+Q PGLMAQMA TA GVA+GSAVGHT+GHA+TG FSG S E PA P
Sbjct: 45 SPAAAPRQ-PGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAE-----PAKPDIT 98
Query: 118 YQ--QGSQSAAEPT-GACAWEIKQFLQCANTQSDL 149
YQ QG+Q + + G C+ EIKQFL+CA QSD+
Sbjct: 99 YQEPQGAQLQNQQSFGPCSLEIKQFLECAQNQSDV 133
>sp|Q8WYQ3|CHC10_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 10,
mitochondrial OS=Homo sapiens GN=CHCHD10 PE=1 SV=1
Length = 142
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Query: 67 PGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAA 126
PGLMAQMA TA GVA+GSAVGH +G A+TG FSG S+ + PA AP PA Q Q
Sbjct: 42 PGLMAQMATTAAGVAVGSAVGHVMGSALTGAFSGGSSEPSQPAVQQAPTPAAPQPLQ--- 98
Query: 127 EPTGACAWEIKQFLQCANTQSDLS 150
G CA+EI+QFL C+ TQSDLS
Sbjct: 99 --MGPCAYEIRQFLDCSTTQSDLS 120
>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain-containing protein 2,
mitochondrial OS=Homo sapiens GN=CHCHD2 PE=1 SV=1
Length = 151
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 7/90 (7%)
Query: 61 AAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQ 120
AAP+Q PGLMAQMA TA GVA+GSAVGHT+GHA+TG FSG + E PA P YQ+
Sbjct: 48 AAPRQ-PGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAE-----PARPDITYQE 101
Query: 121 -GSQSAAEPTGACAWEIKQFLQCANTQSDL 149
A+ C +EIKQFL+CA Q D+
Sbjct: 102 PQGTQPAQQQQPCLYEIKQFLECAQNQGDI 131
>sp|Q5T1J5|CHCH9_HUMAN Putative coiled-coil-helix-coiled-coil-helix domain-containing
protein CHCHD2P9, mitochondrial OS=Homo sapiens
GN=CHCHD2P9 PE=5 SV=1
Length = 151
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
Query: 61 AAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQ 120
AAP+Q PGLMAQMA TA GVA+GSAVGHT GHAVTG FSG + E PA P AYQ+
Sbjct: 48 AAPRQ-PGLMAQMATTAAGVAVGSAVGHTQGHAVTGGFSGGSNAE-----PARPDIAYQE 101
Query: 121 -GSQSAAEPTGACAWEIKQFLQCANTQSDL 149
A+ C + IKQFL+CA Q D+
Sbjct: 102 PQGTQPAQQQQPCFYGIKQFLECAQNQGDI 131
>sp|Q09254|HAR1_CAEEL Hemiasterlin resistant protein 1 OS=Caenorhabditis elegans GN=har-1
PE=4 SV=1
Length = 154
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 62/95 (65%), Gaps = 7/95 (7%)
Query: 56 MPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPA 115
M APM AP QGPGLM QMAATAGGVAIGSAVGH +G GMF+G S A A AA A
Sbjct: 50 MGAPMGAPSQGPGLMKQMAATAGGVAIGSAVGHAVG----GMFTGGGSSHAEQAPAAAAA 105
Query: 116 PAYQQGSQSAAEPTGACAWEIKQFLQCANTQSDLS 150
PA + ++P C +E +QF+ CA QSD+S
Sbjct: 106 PAGAPQASGYSQP---CEFEWRQFVDCAQNQSDVS 137
>sp|Q03667|MIC17_YEAST Mitochondrial intermembrane space cysteine motif-containing protein
MIC17 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MIC17 PE=1 SV=1
Length = 156
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 28 SRGHSRASPAPAPRPTPATPAPVQAQPTM-------------PAPMAAPQQGPGLMAQMA 74
SRG SR P RPT A A P PA A +Q PG+ AQMA
Sbjct: 4 SRGSSR--PISRSRPTQTRSASTMAAPVHPQQQQQPNAYSHPPAAGAQTRQ-PGMFAQMA 60
Query: 75 ATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTG-ACA 133
+TA GVA+GS +GHT+G +TGMFSGS S ++AP A G + G C
Sbjct: 61 STAAGVAVGSTIGHTLGAGITGMFSGSGS-DSAPVEQQQQNMANTSGQTQTDQQLGRTCE 119
Query: 134 WEIKQFLQCAN 144
+ + F +C +
Sbjct: 120 IDARNFTRCLD 130
>sp|Q10307|YD52_SCHPO Uncharacterized protein C6C3.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC6C3.02c PE=4 SV=1
Length = 172
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 67 PGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAA 126
PG + +TA GV IGSA+GHT+G +TG FSGS S APA + P +Y AA
Sbjct: 55 PGFFGNLVSTAAGVGIGSAIGHTVGSVITGGFSGSGSNN-APADTSVPQSSYSNSVPEAA 113
Query: 127 ----------------EPTGACAWEIKQFLQCAN 144
E AC + K F C N
Sbjct: 114 YGSAPPSTFASSAISEEAKNACKGDAKMFADCIN 147
>sp|Q9T1V6|VG42_BPMU Protein gp42 OS=Enterobacteria phage Mu GN=42 PE=4 SV=1
Length = 690
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 38 PAPRPTPATP---APVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHT--IGH 92
PAPRP A P PV A+ PAP+ P + GL++++A +A G + VG G
Sbjct: 466 PAPRPVLALPPPGVPVTAR---PAPLPLPGK-SGLLSRLAGSAAGQLVTGTVGKLADAGR 521
Query: 93 AVTGMFSGSDSKEAAPA 109
AV G FSG +K A A
Sbjct: 522 AVGGWFSGIGNKLAGSA 538
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.123 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,284,859
Number of Sequences: 539616
Number of extensions: 2870023
Number of successful extensions: 42726
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 1718
Number of HSP's that attempted gapping in prelim test: 26739
Number of HSP's gapped (non-prelim): 12133
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)