Query psy4
Match_columns 150
No_of_seqs 177 out of 405
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 22:46:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4090|consensus 100.0 2.4E-33 5.3E-38 218.3 10.3 95 53-150 42-137 (157)
2 KOG4090|consensus 99.5 8.3E-15 1.8E-19 114.7 6.1 90 50-148 52-155 (157)
3 PF09849 DUF2076: Uncharacteri 96.5 0.019 4.1E-07 48.4 8.6 30 65-94 133-162 (247)
4 PF06747 CHCH: CHCH domain; I 91.4 0.24 5.2E-06 28.9 2.7 18 132-149 1-19 (35)
5 COG3416 Uncharacterized protei 86.4 2.5 5.5E-05 35.4 6.3 33 62-94 131-163 (233)
6 PF09849 DUF2076: Uncharacteri 77.3 6.8 0.00015 33.1 5.7 32 71-102 135-166 (247)
7 PF05537 DUF759: Borrelia burg 68.7 2.1 4.4E-05 38.9 0.7 29 62-97 127-155 (431)
8 cd08177 MAR Maleylacetate redu 37.7 26 0.00056 30.0 2.3 24 75-98 215-241 (337)
9 PF01431 Peptidase_M13: Peptid 35.8 20 0.00043 28.0 1.2 15 82-96 36-50 (206)
10 PRK09860 putative alcohol dehy 35.7 28 0.0006 30.5 2.2 25 74-98 246-273 (383)
11 KOG4618|consensus 34.8 37 0.00081 23.9 2.3 21 128-148 20-41 (74)
12 COG3134 Predicted outer membra 33.3 16 0.00035 29.3 0.4 19 73-91 71-89 (179)
13 COG4395 Uncharacterized protei 32.8 55 0.0012 28.4 3.5 9 67-75 30-38 (281)
14 COG3590 PepO Predicted metallo 32.0 19 0.0004 34.4 0.6 15 82-96 487-501 (654)
15 COG1454 EutG Alcohol dehydroge 31.4 39 0.00084 30.2 2.4 26 73-98 243-271 (377)
16 cd08182 HEPD Hydroxyethylphosp 29.6 44 0.00095 28.8 2.4 15 84-98 252-266 (367)
17 KOG1924|consensus 28.8 1.4E+02 0.0029 30.2 5.7 8 64-71 598-605 (1102)
18 KOG4695|consensus 28.5 35 0.00075 26.1 1.4 16 129-144 66-81 (122)
19 cd08176 LPO Lactadehyde:propan 28.1 43 0.00093 29.1 2.1 24 75-98 244-270 (377)
20 KOG4114|consensus 27.9 42 0.00092 23.5 1.6 14 131-144 44-57 (73)
21 TIGR02638 lactal_redase lactal 27.5 49 0.0011 28.8 2.4 24 75-98 247-273 (379)
22 cd08191 HHD 6-hydroxyhexanoate 27.3 47 0.001 28.9 2.2 24 75-98 253-279 (386)
23 cd08185 Fe-ADH1 Iron-containin 26.9 40 0.00087 29.2 1.7 25 74-98 246-273 (380)
24 cd08183 Fe-ADH2 Iron-containin 26.6 53 0.0012 28.4 2.4 24 75-98 238-264 (374)
25 cd08193 HVD 5-hydroxyvalerate 26.2 52 0.0011 28.5 2.3 24 75-98 242-268 (376)
26 cd08189 Fe-ADH5 Iron-containin 25.7 52 0.0011 28.5 2.2 24 75-98 243-269 (374)
27 cd08551 Fe-ADH iron-containing 25.5 53 0.0012 28.2 2.2 23 76-98 240-265 (370)
28 cd08182 HEPD Hydroxyethylphosp 25.3 48 0.001 28.5 1.9 25 68-92 240-264 (367)
29 KOG3477|consensus 25.1 63 0.0014 23.7 2.2 17 128-144 26-42 (97)
30 PRK10624 L-1,2-propanediol oxi 25.0 52 0.0011 28.6 2.1 24 75-98 246-272 (382)
31 cd08186 Fe-ADH8 Iron-containin 24.7 58 0.0012 28.4 2.3 24 74-97 243-269 (383)
32 cd08188 Fe-ADH4 Iron-containin 24.5 58 0.0012 28.3 2.2 13 86-98 258-270 (377)
33 cd08178 AAD_C C-terminal alcoh 24.4 54 0.0012 28.7 2.1 24 75-98 248-274 (398)
34 PF05051 COX17: Cytochrome C o 24.3 72 0.0016 20.8 2.1 17 130-146 29-45 (49)
35 cd08184 Fe-ADH3 Iron-containin 24.2 40 0.00086 29.3 1.2 25 74-98 235-262 (347)
36 PF06897 DUF1269: Protein of u 23.6 53 0.0011 24.0 1.6 16 75-90 21-36 (102)
37 PF10200 Ndufs5: NADH:ubiquino 23.3 90 0.002 22.9 2.7 19 130-148 31-49 (96)
38 cd08179 NADPH_BDH NADPH-depend 22.9 71 0.0015 27.7 2.5 24 75-98 242-268 (375)
39 PF08583 Cmc1: Cytochrome c ox 22.7 67 0.0014 20.8 1.8 16 130-145 11-26 (69)
40 KOG4138|consensus 22.6 77 0.0017 23.3 2.2 21 128-148 59-80 (96)
41 cd08192 Fe-ADH7 Iron-containin 21.9 64 0.0014 27.8 2.0 24 75-98 244-269 (370)
42 KOG4175|consensus 21.9 40 0.00087 28.6 0.7 25 67-91 219-243 (268)
43 cd08191 HHD 6-hydroxyhexanoate 21.7 60 0.0013 28.3 1.8 25 68-92 253-277 (386)
44 PRK15138 aldehyde reductase; P 21.4 58 0.0013 28.6 1.7 25 74-98 247-277 (387)
45 PRK09430 djlA Dna-J like membr 21.0 83 0.0018 26.5 2.5 17 127-143 68-84 (267)
46 cd08181 PPD-like 1,3-propanedi 20.7 68 0.0015 27.6 1.9 24 75-98 241-267 (357)
47 KOG4110|consensus 20.6 68 0.0015 24.5 1.6 15 130-144 57-71 (120)
48 PF03035 RNA_capsid: Calicivir 20.6 72 0.0016 26.9 2.0 20 68-87 4-23 (226)
49 COG1454 EutG Alcohol dehydroge 20.5 59 0.0013 29.1 1.5 27 68-94 245-271 (377)
No 1
>KOG4090|consensus
Probab=100.00 E-value=2.4e-33 Score=218.30 Aligned_cols=95 Identities=52% Similarity=0.710 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhHhhhhhhccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCc
Q psy4 53 QPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGAC 132 (150)
Q Consensus 53 ~p~~~~~~a~~~~gpGl~~qmAstAaGvAvGsaVgH~ig~aitg~fsg~s~~~~~~~~q~~~~~~~~~~~q~~q~~~~~C 132 (150)
+|+..+.....+.+||||.|||+|++||+|||+|||+||++|||+|+|++++|++.++ ++|++++...+. .+++++|
T Consensus 42 ~Ps~~G~~~~~p~qPgl~aqMAtTaaGvavGsaVGHt~G~~iTg~Fsg~~~~ea~~~~--~~~~~p~g~~q~-~q~~~~C 118 (157)
T KOG4090|consen 42 APSAGGSPAFAPRQPGLMAQMATTAAGVAVGSAVGHTMGPAITGGFSGGSSHEAAVPD--ITYQAPAGSTQP-AQQQQPC 118 (157)
T ss_pred CCCCCCCCCCCCCccHHHHHHHhhccchhccccccccccccccccccCCCCCCCCCcc--ccccccccccch-hhhcCch
Confidence 3444333333444599999999999999999999999999999999999888887776 455554432121 3456899
Q ss_pred HHHHHHHHHHHHhc-CCCC
Q psy4 133 AWEIKQFLQCANTQ-SDLS 150 (150)
Q Consensus 133 ~~~~kqF~~C~~n~-~Di~ 150 (150)
+||+|+|+||++|+ +||+
T Consensus 119 ~~e~kqF~dCa~~~~~d~s 137 (157)
T KOG4090|consen 119 FIEIKQFLDCAQNQGSDIS 137 (157)
T ss_pred HHHHHHHHHHHHhcCcchH
Confidence 99999999999997 8985
No 2
>KOG4090|consensus
Probab=99.54 E-value=8.3e-15 Score=114.66 Aligned_cols=90 Identities=22% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhHhhhhhhccccCCCCCCCCCCCCCCCCCCCcccccccccc----
Q psy4 50 VQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSA---- 125 (150)
Q Consensus 50 ~~~~p~~~~~~a~~~~gpGl~~qmAstAaGvAvGsaVgH~ig~aitg~fsg~s~~~~~~~~q~~~~~~~~~~~q~~---- 125 (150)
.+.+|++|++|+.+..| +++|++|||+|||.|+++|+|+++.+...+....++.+..+...+.++.|
T Consensus 52 ~p~qPgl~aqMAtTaaG---------vavGsaVGHt~G~~iTg~Fsg~~~~ea~~~~~~~~~p~g~~q~~q~~~~C~~e~ 122 (157)
T KOG4090|consen 52 APRQPGLMAQMATTAAG---------VAVGSAVGHTMGPAITGGFSGGSSHEAAVPDITYQAPAGSTQPAQQQQPCFIEI 122 (157)
T ss_pred CCCccHHHHHHHhhccc---------hhccccccccccccccccccCCCCCCCCCccccccccccccchhhhcCchHHHH
Confidence 33447887777777666 99999999999999999999999887665444433222111222222223
Q ss_pred ---------C-CCCCCcHHHHHHHHHHHHhcCC
Q psy4 126 ---------A-EPTGACAWEIKQFLQCANTQSD 148 (150)
Q Consensus 126 ---------q-~~~~~C~~~~kqF~~C~~n~~D 148 (150)
+ .++..|+||+++|++|.++.+.
T Consensus 123 kqF~dCa~~~~~d~slC~~f~e~Lk~Ck~~~~~ 155 (157)
T KOG4090|consen 123 KQFLDCAQNQGSDISLCEGYNEMLKQCKKNSGL 155 (157)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcc
Confidence 2 4678899999999999997643
No 3
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=96.48 E-value=0.019 Score=48.38 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=25.4
Q ss_pred CCChhHHHHHHhhhhhhhhhhHhhhhhhcc
Q psy4 65 QGPGLMAQMAATAGGVAIGSAVGHTIGHAV 94 (150)
Q Consensus 65 ~gpGl~~qmAstAaGvAvGsaVgH~ig~ai 94 (150)
+++|+|++++.||+|||-|..|+..|.++|
T Consensus 133 ~~ggFLg~A~~TAAGVAGG~lL~n~i~~lF 162 (247)
T PF09849_consen 133 APGGFLGGAAQTAAGVAGGMLLANGIESLF 162 (247)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 558999999999999999998888666544
No 4
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=91.39 E-value=0.24 Score=28.90 Aligned_cols=18 Identities=39% Similarity=0.750 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHh-cCCC
Q psy4 132 CAWEIKQFLQCANT-QSDL 149 (150)
Q Consensus 132 C~~~~kqF~~C~~n-~~Di 149 (150)
|..++++|++|++. ++|+
T Consensus 1 C~~e~~~~~~Cl~~n~~~~ 19 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDW 19 (35)
T ss_dssp THHHHHHHHHHHHCH-SST
T ss_pred CHHHHHHHHHHHHHCCCcH
Confidence 88999999999984 4544
No 5
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.38 E-value=2.5 Score=35.42 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCCCCChhHHHHHHhhhhhhhhhhHhhhhhhcc
Q psy4 62 APQQGPGLMAQMAATAGGVAIGSAVGHTIGHAV 94 (150)
Q Consensus 62 ~~~~gpGl~~qmAstAaGvAvGsaVgH~ig~ai 94 (150)
....+.|.+++.+.||+|||=|-.|+..|.+.|
T Consensus 131 ~~~r~ssFLG~AlqTAAGVAGGMlL~n~L~~mF 163 (233)
T COG3416 131 ANTRSSSFLGGALQTAAGVAGGMLLANGLEGMF 163 (233)
T ss_pred cccccchhHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 345678999999999999999988877665444
No 6
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=77.31 E-value=6.8 Score=33.12 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=23.9
Q ss_pred HHHHHhhhhhhhhhhHhhhhhhccccCCCCCC
Q psy4 71 AQMAATAGGVAIGSAVGHTIGHAVTGMFSGSD 102 (150)
Q Consensus 71 ~qmAstAaGvAvGsaVgH~ig~aitg~fsg~s 102 (150)
+...++|+..|.|-+-|-+|+.+|+++|+++.
T Consensus 135 ggFLg~A~~TAAGVAGG~lL~n~i~~lF~~~~ 166 (247)
T PF09849_consen 135 GGFLGGAAQTAAGVAGGMLLANGIESLFGGHS 166 (247)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 66666777778887777777888888886644
No 7
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=68.73 E-value=2.1 Score=38.94 Aligned_cols=29 Identities=52% Similarity=0.881 Sum_probs=16.5
Q ss_pred CCCCCChhHHHHHHhhhhhhhhhhHhhhhhhccccC
Q psy4 62 APQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGM 97 (150)
Q Consensus 62 ~~~~gpGl~~qmAstAaGvAvGsaVgH~ig~aitg~ 97 (150)
+.++|-||.+.+ ||||+||.+||.+|+.+
T Consensus 127 aasqgkgLvaKI-------AiGsaLGnvi~na~sKv 155 (431)
T PF05537_consen 127 AASQGKGLVAKI-------AIGSALGNVIGNAISKV 155 (431)
T ss_pred Hhhcccchheeh-------hHHHHHHHHHHHHHhhh
Confidence 345677775554 35555566666666543
No 8
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=37.68 E-value=26 Score=29.95 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=16.1
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++.+|.++ |..+.|.|+|.|++.|
T Consensus 215 s~~ag~a~~~~~~g~~H~l~h~l~~~~ 241 (337)
T cd08177 215 AWLCGTCLGSVGMGLSHKLGHVLGGTF 241 (337)
T ss_pred HHHHHHHhccccHHHHHHhhCccccCc
Confidence 44556655 3567788888887776
No 9
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=35.78 E-value=20 Score=28.02 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=10.4
Q ss_pred hhhhHhhhhhhcccc
Q psy4 82 IGSAVGHTIGHAVTG 96 (150)
Q Consensus 82 vGsaVgH~ig~aitg 96 (150)
+|+.|||-|+|+|+.
T Consensus 36 lG~ilahel~hafd~ 50 (206)
T PF01431_consen 36 LGFILAHELMHAFDP 50 (206)
T ss_dssp HHHHHHHHHHHCTST
T ss_pred HHHHHHHHHHHHHHH
Confidence 577777777777744
No 10
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=35.67 E-value=28 Score=30.49 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=14.9
Q ss_pred HHhhhhhhh---hhhHhhhhhhccccCC
Q psy4 74 AATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 74 AstAaGvAv---GsaVgH~ig~aitg~f 98 (150)
|++.+|+++ |..+.|.|+|.|++.|
T Consensus 246 as~laG~a~~~~g~g~~Hal~h~lg~~~ 273 (383)
T PRK09860 246 AQFLAGMAFNNASLGYVHAMAHQLGGFY 273 (383)
T ss_pred HHHHHHHHHccccHHHHHHHhhHHhhCc
Confidence 455566666 4445666666666655
No 11
>KOG4618|consensus
Probab=34.79 E-value=37 Score=23.86 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHHHH-hcCC
Q psy4 128 PTGACAWEIKQFLQCAN-TQSD 148 (150)
Q Consensus 128 ~~~~C~~~~kqF~~C~~-n~~D 148 (150)
..++|.-+.+.=++||+ |+.|
T Consensus 20 ~~nPCl~es~aSfkCLeennyD 41 (74)
T KOG4618|consen 20 YYNPCLLESSASFKCLEENNYD 41 (74)
T ss_pred cCChHHHHHHHHHHHHHhcCcc
Confidence 45899999999999998 4555
No 12
>COG3134 Predicted outer membrane lipoprotein [Function unknown]
Probab=33.33 E-value=16 Score=29.29 Aligned_cols=19 Identities=32% Similarity=0.685 Sum_probs=12.8
Q ss_pred HHHhhhhhhhhhhHhhhhh
Q psy4 73 MAATAGGVAIGSAVGHTIG 91 (150)
Q Consensus 73 mAstAaGvAvGsaVgH~ig 91 (150)
+++|+.|..+|-.|||-+|
T Consensus 71 iaGt~iGAv~GGl~G~Q~G 89 (179)
T COG3134 71 IAGSVLGAVAGGVIGHQFG 89 (179)
T ss_pred chhhhhHHHhhhhcccccc
Confidence 5557777777777777665
No 13
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.79 E-value=55 Score=28.40 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=4.5
Q ss_pred ChhHHHHHH
Q psy4 67 PGLMAQMAA 75 (150)
Q Consensus 67 pGl~~qmAs 75 (150)
.||||+|++
T Consensus 30 ~~~~g~l~g 38 (281)
T COG4395 30 SGMLGGLAG 38 (281)
T ss_pred hhhhhHHHH
Confidence 455555543
No 14
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.97 E-value=19 Score=34.44 Aligned_cols=15 Identities=47% Similarity=0.993 Sum_probs=11.1
Q ss_pred hhhhHhhhhhhcccc
Q psy4 82 IGSAVGHTIGHAVTG 96 (150)
Q Consensus 82 vGsaVgH~ig~aitg 96 (150)
||.+|||-|||+|+-
T Consensus 487 IGaVIgHEI~HgFDd 501 (654)
T COG3590 487 IGAVIGHEIGHGFDD 501 (654)
T ss_pred ccceehhhhcccccC
Confidence 677788888888743
No 15
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=31.38 E-value=39 Score=30.24 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=14.9
Q ss_pred HHHhhhhhhhhhh---HhhhhhhccccCC
Q psy4 73 MAATAGGVAIGSA---VGHTIGHAVTGMF 98 (150)
Q Consensus 73 mAstAaGvAvGsa---VgH~ig~aitg~f 98 (150)
+|++.+|++++++ +.|.|+|.+++.|
T Consensus 243 ~aa~lAGmAF~na~lG~~HalaH~lG~~~ 271 (377)
T COG1454 243 LAATLAGMAFANAGLGLVHALAHPLGALF 271 (377)
T ss_pred HHHHHHHHHhcchhHHHHHHhhccccccc
Confidence 4556667777432 5566666665555
No 16
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=29.64 E-value=44 Score=28.76 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=8.3
Q ss_pred hhHhhhhhhccccCC
Q psy4 84 SAVGHTIGHAVTGMF 98 (150)
Q Consensus 84 saVgH~ig~aitg~f 98 (150)
..+.|.|+|.+++.|
T Consensus 252 ~g~~H~l~h~l~~~~ 266 (367)
T cd08182 252 TTAAHAISYPLTSRY 266 (367)
T ss_pred HHHHHHHhchhhcCC
Confidence 345566666665554
No 17
>KOG1924|consensus
Probab=28.79 E-value=1.4e+02 Score=30.16 Aligned_cols=8 Identities=25% Similarity=0.704 Sum_probs=4.1
Q ss_pred CCCChhHH
Q psy4 64 QQGPGLMA 71 (150)
Q Consensus 64 ~~gpGl~~ 71 (150)
+-++|||.
T Consensus 598 PP~~gm~p 605 (1102)
T KOG1924|consen 598 PPPPGMFP 605 (1102)
T ss_pred CCCCCccc
Confidence 34455654
No 18
>KOG4695|consensus
Probab=28.47 E-value=35 Score=26.08 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHHH
Q psy4 129 TGACAWEIKQFLQCAN 144 (150)
Q Consensus 129 ~~~C~~~~kqF~~C~~ 144 (150)
...|.-|+.+|+||..
T Consensus 66 d~~C~Kei~~f~dC~~ 81 (122)
T KOG4695|consen 66 DDACRKEIQGFLDCAA 81 (122)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3789999999999985
No 19
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=28.10 E-value=43 Score=29.06 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=12.9
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++.+|.++ |..+.|.|+|.|++.|
T Consensus 244 s~laG~a~~~~g~g~~Hal~h~l~~~~ 270 (377)
T cd08176 244 QYLAGMAFNNAGLGYVHSMAHQLGGFY 270 (377)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhHhhcC
Confidence 44555555 4445566666665544
No 20
>KOG4114|consensus
Probab=27.88 E-value=42 Score=23.54 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=12.8
Q ss_pred CcHHHHHHHHHHHH
Q psy4 131 ACAWEIKQFLQCAN 144 (150)
Q Consensus 131 ~C~~~~kqF~~C~~ 144 (150)
-|...+|+|+||.-
T Consensus 44 eC~al~~af~dCKR 57 (73)
T KOG4114|consen 44 ECIALMKAFLDCKR 57 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999984
No 21
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=27.52 E-value=49 Score=28.78 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=12.2
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++-+|+++ |..+.|.|+|.|++.|
T Consensus 247 s~laG~a~~~~g~g~~Hal~~~l~~~~ 273 (379)
T TIGR02638 247 QYVAGMGFSNVGLGLVHGMAHPLGAFY 273 (379)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhcCc
Confidence 34445555 3344555555665554
No 22
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=27.34 E-value=47 Score=28.95 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=12.8
Q ss_pred Hhhhhhhhh---hhHhhhhhhccccCC
Q psy4 75 ATAGGVAIG---SAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAvG---saVgH~ig~aitg~f 98 (150)
++-+|++++ -.+.|.|+|.|++.+
T Consensus 253 s~laG~a~~~~~~g~~Hal~~~l~~~~ 279 (386)
T cd08191 253 ALLAGLAFGTAGTAAVHALQYPVGALT 279 (386)
T ss_pred HHHHHHHHhccchHHHHHhhhhhhcCc
Confidence 344555553 345566666665554
No 23
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=26.90 E-value=40 Score=29.21 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=15.6
Q ss_pred HHhhhhhhh---hhhHhhhhhhccccCC
Q psy4 74 AATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 74 AstAaGvAv---GsaVgH~ig~aitg~f 98 (150)
|++.+|+++ |..+.|.|+|.|++.+
T Consensus 246 as~laG~a~~~~g~g~~Hai~~~l~~~~ 273 (380)
T cd08185 246 ANTLGGMVEANSGCTSPHALEHALSGLH 273 (380)
T ss_pred HHHHHHHHHcCccchhhhHhhChHhccC
Confidence 345556666 3456677777776655
No 24
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=26.64 E-value=53 Score=28.44 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=13.5
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++-+|.++ |..+.|.|+|.|++.|
T Consensus 238 s~laG~a~~~~g~g~~Hai~h~lg~~~ 264 (374)
T cd08183 238 SLLGGIALANAGLGAVHGLAGPIGGLF 264 (374)
T ss_pred HHHHHHHHhhhhhHHHHHhhchhhcCC
Confidence 44455555 2345666666666654
No 25
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=26.17 E-value=52 Score=28.47 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=12.6
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++.+|.++ |-.+.|.|+|.|++.+
T Consensus 242 s~laG~a~~~~g~g~~Hal~h~l~~~~ 268 (376)
T cd08193 242 AMYAGQAFANAPVAAVHALAYPLGGKF 268 (376)
T ss_pred HHHHHHHHhhhhHHHHHHhcchhhcCc
Confidence 44555555 2345566666665544
No 26
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=25.74 E-value=52 Score=28.49 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=12.6
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++-+|+++ |..+.|.|+|.|++.|
T Consensus 243 s~lag~a~~~~g~g~~Hal~h~l~~~~ 269 (374)
T cd08189 243 SYYAGLAFTRAGVGYVHAIAHQLGGVY 269 (374)
T ss_pred HHHHHHHHhcccHHHHHHhhhhhhcCC
Confidence 34445555 2345566666665554
No 27
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.47 E-value=53 Score=28.18 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=12.8
Q ss_pred hhhhhhh---hhhHhhhhhhccccCC
Q psy4 76 TAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 76 tAaGvAv---GsaVgH~ig~aitg~f 98 (150)
+-+|+++ |..+.|.|+|+|++.|
T Consensus 240 ~laG~a~~~~~~g~~H~i~~~l~~~~ 265 (370)
T cd08551 240 TLAGMAFSNAGLGAVHAMAHPLGALY 265 (370)
T ss_pred HHHHHHHhCcchHHHHHHhhHHhhCC
Confidence 3344444 3456666666665554
No 28
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.28 E-value=48 Score=28.53 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.8
Q ss_pred hhHHHHHHhhhhhhhhhhHhhhhhh
Q psy4 68 GLMAQMAATAGGVAIGSAVGHTIGH 92 (150)
Q Consensus 68 Gl~~qmAstAaGvAvGsaVgH~ig~ 92 (150)
.++++|+-...|..+.|+|+|.|+.
T Consensus 240 s~laG~a~~~~~~g~~H~l~h~l~~ 264 (367)
T cd08182 240 SLLAGLAISNTRTTAAHAISYPLTS 264 (367)
T ss_pred HHHHHHHHhchhHHHHHHHhchhhc
Confidence 3567777666788889999998863
No 29
>KOG3477|consensus
Probab=25.07 E-value=63 Score=23.73 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHH
Q psy4 128 PTGACAWEIKQFLQCAN 144 (150)
Q Consensus 128 ~~~~C~~~~kqF~~C~~ 144 (150)
-.+-|.-++|+++.|+.
T Consensus 26 H~geC~~em~eYl~Cl~ 42 (97)
T KOG3477|consen 26 HLGECTAEMKEYLGCLK 42 (97)
T ss_pred cccccHHHHHHHHHHHH
Confidence 35789999999999996
No 30
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=25.00 E-value=52 Score=28.63 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=12.9
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++-+|.++ |..+.|.|+|.|++.|
T Consensus 246 s~laG~a~~~~g~g~~Hal~h~l~~~~ 272 (382)
T PRK10624 246 QYIAGMGFSNVGLGLVHGMAHPLGAFY 272 (382)
T ss_pred HHHHHHHHhccchHHHHHhhhHHhhCC
Confidence 44455555 3345566666665555
No 31
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=24.75 E-value=58 Score=28.37 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=13.9
Q ss_pred HHhhhhhhhh---hhHhhhhhhccccC
Q psy4 74 AATAGGVAIG---SAVGHTIGHAVTGM 97 (150)
Q Consensus 74 AstAaGvAvG---saVgH~ig~aitg~ 97 (150)
|++.+|++++ -.+.|.|+|.|++.
T Consensus 243 as~laG~a~~~~~~g~~Hai~~~l~~~ 269 (383)
T cd08186 243 ASAIAGIAIDNGLLHLTHALEHPLSAL 269 (383)
T ss_pred HHHHHHHHHhcchhHHHHHhcCchhcC
Confidence 3444566553 34566666677665
No 32
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=24.45 E-value=58 Score=28.31 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=6.8
Q ss_pred HhhhhhhccccCC
Q psy4 86 VGHTIGHAVTGMF 98 (150)
Q Consensus 86 VgH~ig~aitg~f 98 (150)
+.|.|+|.|++.|
T Consensus 258 ~~Hal~~~l~~~~ 270 (377)
T cd08188 258 AVHAMAHSLGGLL 270 (377)
T ss_pred HHHHHhhhhhhCc
Confidence 4455555555544
No 33
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=24.44 E-value=54 Score=28.70 Aligned_cols=24 Identities=29% Similarity=0.536 Sum_probs=11.5
Q ss_pred Hhhhhhhhh---hhHhhhhhhccccCC
Q psy4 75 ATAGGVAIG---SAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAvG---saVgH~ig~aitg~f 98 (150)
++-+|+++. -.++|.|+|+|++.|
T Consensus 248 s~laG~a~~~~~lg~~Hal~h~l~~~~ 274 (398)
T cd08178 248 ATIAGMAFANAFLGICHSMAHKLGAEF 274 (398)
T ss_pred HHHHHHHhcccchhhhhhhhhhhccCC
Confidence 334455442 234555555555544
No 34
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=24.25 E-value=72 Score=20.80 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHHHHHhc
Q psy4 130 GACAWEIKQFLQCANTQ 146 (150)
Q Consensus 130 ~~C~~~~kqF~~C~~n~ 146 (150)
..|..+++++++|+...
T Consensus 29 e~C~~~Ieahk~Cmr~~ 45 (49)
T PF05051_consen 29 EDCKELIEAHKACMRGE 45 (49)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 35999999999999753
No 35
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=24.20 E-value=40 Score=29.34 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=16.0
Q ss_pred HHhhhhhhh---hhhHhhhhhhccccCC
Q psy4 74 AATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 74 AstAaGvAv---GsaVgH~ig~aitg~f 98 (150)
|++.+|+++ |..+.|.|+|.|++.+
T Consensus 235 As~laG~a~~~~g~g~~Hal~h~L~~~~ 262 (347)
T cd08184 235 ASYLGGMSIANSQVGVCHAASYGLSLHL 262 (347)
T ss_pred HHHHHHHHhCCcccccchhhchHhhcCC
Confidence 345567776 3456677777776765
No 36
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=23.57 E-value=53 Score=23.99 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=7.3
Q ss_pred HhhhhhhhhhhHhhhh
Q psy4 75 ATAGGVAIGSAVGHTI 90 (150)
Q Consensus 75 stAaGvAvGsaVgH~i 90 (150)
+++.|.++|..+|+..
T Consensus 21 G~~~GA~~Gal~G~l~ 36 (102)
T PF06897_consen 21 GAAVGAAAGALAGALS 36 (102)
T ss_pred HHHHHHHHHHHHhHHh
Confidence 3444444444444433
No 37
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=23.34 E-value=90 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=13.2
Q ss_pred CCcHHHHHHHHHHHHhcCC
Q psy4 130 GACAWEIKQFLQCANTQSD 148 (150)
Q Consensus 130 ~~C~~~~kqF~~C~~n~~D 148 (150)
+-|..+-++|++|++..++
T Consensus 31 ~RC~~FE~e~i~C~~~~G~ 49 (96)
T PF10200_consen 31 SRCHPFEKEWIECAEAYGQ 49 (96)
T ss_pred CchHHHHHHHHHHHHHHcc
Confidence 4677777778888765443
No 38
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=22.93 E-value=71 Score=27.66 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=13.1
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++.+|.++ |..+.|.|+|.|++.+
T Consensus 242 s~laG~a~~~~g~g~~Hai~h~lg~~~ 268 (375)
T cd08179 242 QCMAGMAFSNALLGIVHSMAHKTGAEF 268 (375)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhccCC
Confidence 34455555 3445566666665554
No 39
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=22.67 E-value=67 Score=20.79 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=13.5
Q ss_pred CCcHHHHHHHHHHHHh
Q psy4 130 GACAWEIKQFLQCANT 145 (150)
Q Consensus 130 ~~C~~~~kqF~~C~~n 145 (150)
..|.-+++.|.+|..+
T Consensus 11 ~~C~~~i~~~~~C~~~ 26 (69)
T PF08583_consen 11 KKCADEIEAFAECHKD 26 (69)
T ss_pred HHhHHHHHHHHHHHhc
Confidence 4699999999999875
No 40
>KOG4138|consensus
Probab=22.60 E-value=77 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHHh-cCC
Q psy4 128 PTGACAWEIKQFLQCANT-QSD 148 (150)
Q Consensus 128 ~~~~C~~~~kqF~~C~~n-~~D 148 (150)
+.--|..++..|.+|.+. ++.
T Consensus 59 DWRqC~~qm~~FrkCwek~~g~ 80 (96)
T KOG4138|consen 59 DWRQCQPQMQAFRKCWEKQQGR 80 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHcCC
Confidence 345699999999999975 454
No 41
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=21.89 E-value=64 Score=27.79 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=13.6
Q ss_pred Hhhhhhhh--hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI--GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv--GsaVgH~ig~aitg~f 98 (150)
++-+|+++ |..+.|.|+|.|++.|
T Consensus 244 s~laG~a~~~~~g~~Hal~h~l~~~~ 269 (370)
T cd08192 244 ASMGAMAFQKGLGAVHSLSHPLGALY 269 (370)
T ss_pred HHHHHHHHhhccHHHHHhhhHHhhCC
Confidence 34445554 3345677777776655
No 42
>KOG4175|consensus
Probab=21.88 E-value=40 Score=28.60 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=21.1
Q ss_pred ChhHHHHHHhhhhhhhhhhHhhhhh
Q psy4 67 PGLMAQMAATAGGVAIGSAVGHTIG 91 (150)
Q Consensus 67 pGl~~qmAstAaGvAvGsaVgH~ig 91 (150)
+--|-|.+++|.||.|||.|-..+|
T Consensus 219 ~EHf~qVgsvaDGVvvGSkiv~l~g 243 (268)
T KOG4175|consen 219 PEHFKQVGSVADGVVVGSKIVKLLG 243 (268)
T ss_pred HHHHHhhhhhccceEecHHHHHHhc
Confidence 4458899999999999999988665
No 43
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=21.68 E-value=60 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=18.9
Q ss_pred hhHHHHHHhhhhhhhhhhHhhhhhh
Q psy4 68 GLMAQMAATAGGVAIGSAVGHTIGH 92 (150)
Q Consensus 68 Gl~~qmAstAaGvAvGsaVgH~ig~ 92 (150)
+++++|+-.-.|..+.|+|+|.||.
T Consensus 253 s~laG~a~~~~~~g~~Hal~~~l~~ 277 (386)
T cd08191 253 ALLAGLAFGTAGTAAVHALQYPVGA 277 (386)
T ss_pred HHHHHHHHhccchHHHHHhhhhhhc
Confidence 5567776556788889999998873
No 44
>PRK15138 aldehyde reductase; Provisional
Probab=21.44 E-value=58 Score=28.57 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=14.4
Q ss_pred HHhhhhhhhhh---h---HhhhhhhccccCC
Q psy4 74 AATAGGVAIGS---A---VGHTIGHAVTGMF 98 (150)
Q Consensus 74 AstAaGvAvGs---a---VgH~ig~aitg~f 98 (150)
|++.+|.++.+ . +.|.|+|.|++.|
T Consensus 247 as~lag~a~~~~g~~~~~~~Hal~h~lg~~~ 277 (387)
T PRK15138 247 AATQALNGLIGAGVPQDWATHMLGHELTAMH 277 (387)
T ss_pred HHHHHHHHHhccCCCCCchhhhhcchhhhcc
Confidence 45556666621 1 3477777776655
No 45
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=21.03 E-value=83 Score=26.48 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=10.0
Q ss_pred CCCCCcHHHHHHHHHHH
Q psy4 127 EPTGACAWEIKQFLQCA 143 (150)
Q Consensus 127 ~~~~~C~~~~kqF~~C~ 143 (150)
.+...+.-|++.+..-+
T Consensus 68 ADG~Vse~Ei~~~~~l~ 84 (267)
T PRK09430 68 AKGRVTEADIRIASQLM 84 (267)
T ss_pred cCCCcCHHHHHHHHHHH
Confidence 45566777777554443
No 46
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=20.71 E-value=68 Score=27.63 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=14.0
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++-+|+++ |..+.|.|+|.|++.+
T Consensus 241 s~laG~a~~~~g~~~~Hal~~~l~~~~ 267 (357)
T cd08181 241 STLAGMVIAQTGTTLPHGLGYPLTYEK 267 (357)
T ss_pred HHHHHHHHhcccchhhHhhcCccccCC
Confidence 34455555 3456677777776654
No 47
>KOG4110|consensus
Probab=20.60 E-value=68 Score=24.45 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=11.0
Q ss_pred CCcHHHHHHHHHHHH
Q psy4 130 GACAWEIKQFLQCAN 144 (150)
Q Consensus 130 ~~C~~~~kqF~~C~~ 144 (150)
.-|..++..|.||+-
T Consensus 57 keC~ie~~dFqECv~ 71 (120)
T KOG4110|consen 57 KECAIEYDDFQECVL 71 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 358888888888874
No 48
>PF03035 RNA_capsid: Calicivirus putative RNA polymerase/capsid protein; InterPro: IPR004278 Caliciviruses are a small round-structured virus group defined by RNA-dependent RNA polymerase and capsid diversity.
Probab=20.57 E-value=72 Score=26.90 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=13.2
Q ss_pred hhHHHHHHhhhhhhhhhhHh
Q psy4 68 GLMAQMAATAGGVAIGSAVG 87 (150)
Q Consensus 68 Gl~~qmAstAaGvAvGsaVg 87 (150)
-+|+.||+.++|.+||+.|.
T Consensus 4 Af~a~lAgd~~g~~vgslI~ 23 (226)
T PF03035_consen 4 AFIAGLAGDALGSGVGSLIN 23 (226)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 46777777777766666554
No 49
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=20.48 E-value=59 Score=29.09 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=20.2
Q ss_pred hhHHHHHHhhhhhhhhhhHhhhhhhcc
Q psy4 68 GLMAQMAATAGGVAIGSAVGHTIGHAV 94 (150)
Q Consensus 68 Gl~~qmAstAaGvAvGsaVgH~ig~ai 94 (150)
.++++||=.=+|+.+-|+++|.||+.+
T Consensus 245 a~lAGmAF~na~lG~~HalaH~lG~~~ 271 (377)
T COG1454 245 ATLAGMAFANAGLGLVHALAHPLGALF 271 (377)
T ss_pred HHHHHHHhcchhHHHHHHhhccccccc
Confidence 356667666678889999999998444
Done!