Query psy4
Match_columns 150
No_of_seqs 177 out of 405
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 22:47:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ei0_A P8MTCP1; helix-turn-hel 95.5 0.008 2.7E-07 36.2 2.3 21 130-150 1-22 (38)
2 1hp8_A HU-P8; leukemia, cystei 91.3 0.085 2.9E-06 35.6 1.8 21 129-149 4-25 (68)
3 2lql_A Coiled-coil-helix-coile 59.3 5.8 0.0002 28.6 2.6 20 130-149 59-79 (113)
4 2lqt_A Coiled-coil-helix-coile 49.2 12 0.00041 26.0 2.7 22 127-148 11-33 (85)
5 3bfj_A 1,3-propanediol oxidore 34.7 8.3 0.00028 32.1 0.0 24 75-98 251-277 (387)
6 3dwb_A ECE-1, endothelin-conve 33.3 14 0.00047 33.3 1.2 15 82-96 501-515 (670)
7 1o2d_A Alcohol dehydrogenase, 29.9 12 0.0004 31.2 0.1 27 73-99 250-279 (371)
8 1rrm_A Lactaldehyde reductase; 29.9 11 0.00038 31.2 0.0 13 86-98 261-273 (386)
9 1r1h_A Neprilysin; enkephalina 29.5 19 0.00065 32.4 1.5 15 82-96 524-538 (696)
10 3zuk_A Endopeptidase, peptidas 27.4 20 0.00068 32.8 1.2 15 82-96 523-537 (699)
11 3bfj_A 1,3-propanediol oxidore 24.3 32 0.0011 28.5 1.8 24 68-91 251-274 (387)
12 3iv7_A Alcohol dehydrogenase I 24.1 24 0.00083 29.5 1.1 25 74-98 225-252 (364)
13 1rrm_A Lactaldehyde reductase; 23.8 33 0.0011 28.3 1.8 24 69-92 248-271 (386)
14 3ce9_A Glycerol dehydrogenase; 21.6 42 0.0014 27.3 2.1 13 86-98 249-261 (354)
No 1
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=95.47 E-value=0.008 Score=36.16 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.5
Q ss_pred CCcHHHHHHHHHHHHh-cCCCC
Q psy4 130 GACAWEIKQFLQCANT-QSDLS 150 (150)
Q Consensus 130 ~~C~~~~kqF~~C~~n-~~Di~ 150 (150)
++|..+.+.|++||+. +.|++
T Consensus 1 dpC~~~a~a~q~CL~~n~~d~s 22 (38)
T 1ei0_A 1 DPCQKQAAEIQKCLQANSYLES 22 (38)
T ss_dssp CCSHHHHHHHHHHHHHTTTCGG
T ss_pred CchHHHHHHHHHHHHHCCCcHH
Confidence 4799999999999985 57764
No 2
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=91.33 E-value=0.085 Score=35.60 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHHHHh-cCCC
Q psy4 129 TGACAWEIKQFLQCANT-QSDL 149 (150)
Q Consensus 129 ~~~C~~~~kqF~~C~~n-~~Di 149 (150)
.++|..+.+.|++||+. +.|+
T Consensus 4 ~dPC~~~AcaiQ~CL~~N~yd~ 25 (68)
T 1hp8_A 4 KDPCQKQACEIQKCLQANSYME 25 (68)
T ss_dssp CCTTHHHHHHHHHHHHHTTTCH
T ss_pred CCchHHHHHHHHHHHHHcCCcH
Confidence 36999999999999985 4664
No 3
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=59.33 E-value=5.8 Score=28.56 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=16.4
Q ss_pred CCcHHHHHHHHHHHH-hcCCC
Q psy4 130 GACAWEIKQFLQCAN-TQSDL 149 (150)
Q Consensus 130 ~~C~~~~kqF~~C~~-n~~Di 149 (150)
..|..+++.|.+||+ |+.|+
T Consensus 59 ~~C~~ef~~y~~CL~~n~~~~ 79 (113)
T 2lql_A 59 QACAQPFEAFEECLRQNEAAV 79 (113)
T ss_dssp HHTHHHHHHHHHHHHHCTTCT
T ss_pred HHhHHHHHHHHHHHHHccccH
Confidence 479999999999998 44554
No 4
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=49.16 E-value=12 Score=26.01 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=14.5
Q ss_pred CCCCCcHHHHHHHHHHHH-hcCC
Q psy4 127 EPTGACAWEIKQFLQCAN-TQSD 148 (150)
Q Consensus 127 ~~~~~C~~~~kqF~~C~~-n~~D 148 (150)
.+.++|.-+.+.=++||+ |+.|
T Consensus 11 ~d~nPC~~e~~~S~kCL~~n~yD 33 (85)
T 2lqt_A 11 PDINPCLSESDASTRCLDENNYD 33 (85)
T ss_dssp ---CCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCccHHHHHHHHHHHHHcCcc
Confidence 345788888888888887 4445
No 5
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=34.69 E-value=8.3 Score=32.08 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=11.3
Q ss_pred Hhhhhhhh---hhhHhhhhhhccccCC
Q psy4 75 ATAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 75 stAaGvAv---GsaVgH~ig~aitg~f 98 (150)
++-+|.++ |+.++|.|+|+|++.|
T Consensus 251 s~laG~a~~~~g~~~~Hai~h~l~~~~ 277 (387)
T 3bfj_A 251 SLLAGMAFNNANLGYVHAMAHQLGGLY 277 (387)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHhhhHHhcCc
Confidence 34445544 2335555555554443
No 6
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=33.25 E-value=14 Score=33.32 Aligned_cols=15 Identities=47% Similarity=0.798 Sum_probs=10.5
Q ss_pred hhhhHhhhhhhcccc
Q psy4 82 IGSAVGHTIGHAVTG 96 (150)
Q Consensus 82 vGsaVgH~ig~aitg 96 (150)
+|+.|||-|+|+|+.
T Consensus 501 iG~vigHEi~H~FD~ 515 (670)
T 3dwb_A 501 IGVVVGHELTHAFDD 515 (670)
T ss_dssp HHHHHHHHHHHTTST
T ss_pred HHHHHHHHHhhccCc
Confidence 567777777777743
No 7
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=29.92 E-value=12 Score=31.16 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHHhhhhhhh---hhhHhhhhhhccccCCC
Q psy4 73 MAATAGGVAI---GSAVGHTIGHAVTGMFS 99 (150)
Q Consensus 73 mAstAaGvAv---GsaVgH~ig~aitg~fs 99 (150)
.|++-+|.++ |+.++|.|.|.+++.+.
T Consensus 250 ~as~laG~a~~n~G~~~~Hai~h~l~~~~~ 279 (371)
T 1o2d_A 250 VASCLAGMVIAQTGTTLAHALGYPLTTEKG 279 (371)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHhCCC
No 8
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=29.86 E-value=11 Score=31.21 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=5.9
Q ss_pred HhhhhhhccccCC
Q psy4 86 VGHTIGHAVTGMF 98 (150)
Q Consensus 86 VgH~ig~aitg~f 98 (150)
++|.|+|+|++.|
T Consensus 261 ~~H~i~h~l~~~~ 273 (386)
T 1rrm_A 261 LVHGMAHPLGAFY 273 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhccHHhcCc
Confidence 4444444444433
No 9
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*
Probab=29.50 E-value=19 Score=32.40 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=10.9
Q ss_pred hhhhHhhhhhhcccc
Q psy4 82 IGSAVGHTIGHAVTG 96 (150)
Q Consensus 82 vGsaVgH~ig~aitg 96 (150)
+|..|||-|+|+|+-
T Consensus 524 iG~vigHEi~H~FD~ 538 (696)
T 1r1h_A 524 IGMVIGHEITHGFDD 538 (696)
T ss_dssp HHHHHHHHHHGGGST
T ss_pred HHHHHHHHHHHHhhh
Confidence 677777888887743
No 10
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}
Probab=27.39 E-value=20 Score=32.84 Aligned_cols=15 Identities=47% Similarity=0.993 Sum_probs=10.5
Q ss_pred hhhhHhhhhhhcccc
Q psy4 82 IGSAVGHTIGHAVTG 96 (150)
Q Consensus 82 vGsaVgH~ig~aitg 96 (150)
||..|||-|+|+|+-
T Consensus 523 iG~vIgHEi~HgFD~ 537 (699)
T 3zuk_A 523 IGAVIGHEIGHGFDD 537 (699)
T ss_dssp HHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHhhh
Confidence 567777777777743
No 11
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=24.34 E-value=32 Score=28.49 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=18.2
Q ss_pred hhHHHHHHhhhhhhhhhhHhhhhh
Q psy4 68 GLMAQMAATAGGVAIGSAVGHTIG 91 (150)
Q Consensus 68 Gl~~qmAstAaGvAvGsaVgH~ig 91 (150)
.++++++-.-.|..++|+|+|.|+
T Consensus 251 s~laG~a~~~~g~~~~Hai~h~l~ 274 (387)
T 3bfj_A 251 SLLAGMAFNNANLGYVHAMAHQLG 274 (387)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHhhhHHh
Confidence 356777666678888999999886
No 12
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=24.07 E-value=24 Score=29.46 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=13.3
Q ss_pred HHhhhhhhhh---hhHhhhhhhccccCC
Q psy4 74 AATAGGVAIG---SAVGHTIGHAVTGMF 98 (150)
Q Consensus 74 AstAaGvAvG---saVgH~ig~aitg~f 98 (150)
|++-+|.+++ ..+.|.|.|.|++.|
T Consensus 225 As~laG~a~~~~g~g~~Hai~h~lg~~~ 252 (364)
T 3iv7_A 225 GAYLAAVSFASAGSGLHHKICHTLGGTF 252 (364)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHTS
T ss_pred HHHHHhHHhhccCchHHHHHHhHhhhcc
Confidence 3445555552 335566666665655
No 13
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=23.78 E-value=33 Score=28.31 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=14.9
Q ss_pred hHHHHHHhhhhhhhhhhHhhhhhh
Q psy4 69 LMAQMAATAGGVAIGSAVGHTIGH 92 (150)
Q Consensus 69 l~~qmAstAaGvAvGsaVgH~ig~ 92 (150)
++++++-.-.|..++|+|+|.|+.
T Consensus 248 ~laG~a~~~~g~g~~H~i~h~l~~ 271 (386)
T 1rrm_A 248 YVAGMGFSNVGLGLVHGMAHPLGA 271 (386)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCcHHHHHhccHHhc
Confidence 344444334555667999998863
No 14
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=21.62 E-value=42 Score=27.29 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=7.1
Q ss_pred HhhhhhhccccCC
Q psy4 86 VGHTIGHAVTGMF 98 (150)
Q Consensus 86 VgH~ig~aitg~f 98 (150)
.+|+++|+|++.+
T Consensus 249 ~~H~i~hal~~~~ 261 (354)
T 3ce9_A 249 AEHLISHALDKFL 261 (354)
T ss_dssp HHHHHHHHHHHHC
T ss_pred hHHHHhHHHHhCC
Confidence 4555556665544
Done!