Query psy4
Match_columns 150
No_of_seqs 177 out of 405
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 22:47:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cmna1 d.92.1.16 (A:43-391) U 32.8 8.9 0.00065 30.3 2.0 29 66-94 95-123 (346)
2 d1o2da_ e.22.1.2 (A:) Alcohol 25.8 7.1 0.00052 30.2 0.1 23 76-98 241-266 (359)
3 d1jq5a_ e.22.1.2 (A:) Glycerol 17.9 28 0.0021 26.4 2.2 14 84-97 251-264 (366)
4 d1rm8a_ d.92.1.11 (A:) Matrix 17.1 19 0.0014 23.4 0.9 8 84-91 123-130 (169)
5 d1hfca_ d.92.1.11 (A:) Fibrobl 17.1 19 0.0014 23.3 0.9 8 84-91 112-119 (157)
6 d1mmqa_ d.92.1.11 (A:) Matrily 16.4 20 0.0015 23.8 0.9 8 84-91 120-127 (166)
7 d1qiba_ d.92.1.11 (A:) Gelatin 16.3 21 0.0015 23.2 0.9 8 84-91 115-122 (161)
8 d1y93a1 d.92.1.11 (A:106-263) 15.8 21 0.0015 23.2 0.8 8 84-91 113-120 (158)
9 d1i76a_ d.92.1.11 (A:) Neutrop 15.3 23 0.0016 23.4 0.9 8 84-91 118-125 (163)
10 d2ovxa1 d.92.1.11 (A:110-443) 14.8 23 0.0017 23.1 0.8 7 84-90 117-123 (159)
No 1
>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242 {Chloroflexus aurantiacus [TaxId: 1108]}
Probab=32.82 E-value=8.9 Score=30.28 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=16.9
Q ss_pred CChhHHHHHHhhhhhhhhhhHhhhhhhcc
Q psy4 66 GPGLMAQMAATAGGVAIGSAVGHTIGHAV 94 (150)
Q Consensus 66 gpGl~~qmAstAaGvAvGsaVgH~ig~ai 94 (150)
.++||++|+++..|+=+|+++|+.-++.+
T Consensus 95 ~~~~~~~~~~~~~g~QlG~~lG~Ls~~vl 123 (346)
T d3cmna1 95 LGVLMNDVSSKLLGVQIGGLLGYLAQRVL 123 (346)
T ss_dssp --------CHHHHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 36688899999999999999988665544
No 2
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=25.84 E-value=7.1 Score=30.19 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=11.0
Q ss_pred hhhhhhh---hhhHhhhhhhccccCC
Q psy4 76 TAGGVAI---GSAVGHTIGHAVTGMF 98 (150)
Q Consensus 76 tAaGvAv---GsaVgH~ig~aitg~f 98 (150)
+.+|.++ |..+.|.|+|+|++.|
T Consensus 241 ~~~g~a~~~~g~g~~Hai~h~l~~~~ 266 (359)
T d1o2da_ 241 CLAGMVIAQTGTTLAHALGYPLTTEK 266 (359)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCcccccccccchhhhc
Confidence 3444444 3344555555555544
No 3
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.88 E-value=28 Score=26.36 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=7.8
Q ss_pred hhHhhhhhhccccC
Q psy4 84 SAVGHTIGHAVTGM 97 (150)
Q Consensus 84 saVgH~ig~aitg~ 97 (150)
+.++|.|+|+|+..
T Consensus 251 ~~~~H~i~h~l~~~ 264 (366)
T d1jq5a_ 251 LAAAHAIHNGFTAL 264 (366)
T ss_dssp CCHHHHHHHHGGGS
T ss_pred cccccccchhhHhh
Confidence 34556666666554
No 4
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.15 E-value=19 Score=23.39 Aligned_cols=8 Identities=38% Similarity=1.007 Sum_probs=4.4
Q ss_pred hhHhhhhh
Q psy4 84 SAVGHTIG 91 (150)
Q Consensus 84 saVgH~ig 91 (150)
|-|||+||
T Consensus 123 HEiGHaLG 130 (169)
T d1rm8a_ 123 HELGHALG 130 (169)
T ss_dssp HHHHHHHT
T ss_pred hhhhhhhc
Confidence 55566553
No 5
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.13 E-value=19 Score=23.34 Aligned_cols=8 Identities=38% Similarity=1.045 Sum_probs=5.0
Q ss_pred hhHhhhhh
Q psy4 84 SAVGHTIG 91 (150)
Q Consensus 84 saVgH~ig 91 (150)
|-|||+||
T Consensus 112 HEiGHaLG 119 (157)
T d1hfca_ 112 HELGHSLG 119 (157)
T ss_dssp HHHHHHHT
T ss_pred hhhhhhcc
Confidence 66666654
No 6
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.39 E-value=20 Score=23.82 Aligned_cols=8 Identities=38% Similarity=1.045 Sum_probs=4.3
Q ss_pred hhHhhhhh
Q psy4 84 SAVGHTIG 91 (150)
Q Consensus 84 saVgH~ig 91 (150)
|-|||+||
T Consensus 120 HEiGHaLG 127 (166)
T d1mmqa_ 120 HELGHSLG 127 (166)
T ss_dssp HHHHHHHT
T ss_pred hhhccccC
Confidence 55555553
No 7
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.28 E-value=21 Score=23.20 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=4.8
Q ss_pred hhHhhhhh
Q psy4 84 SAVGHTIG 91 (150)
Q Consensus 84 saVgH~ig 91 (150)
|-|||+||
T Consensus 115 HEiGHaLG 122 (161)
T d1qiba_ 115 HEFGHAMG 122 (161)
T ss_dssp HHHHHHHT
T ss_pred eccccccc
Confidence 66666554
No 8
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.82 E-value=21 Score=23.16 Aligned_cols=8 Identities=38% Similarity=1.099 Sum_probs=4.3
Q ss_pred hhHhhhhh
Q psy4 84 SAVGHTIG 91 (150)
Q Consensus 84 saVgH~ig 91 (150)
|-|||+||
T Consensus 113 HEiGHaLG 120 (158)
T d1y93a1 113 HEIGHSLG 120 (158)
T ss_dssp HHHHHHTT
T ss_pred hhhhhhcC
Confidence 55555553
No 9
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.30 E-value=23 Score=23.43 Aligned_cols=8 Identities=38% Similarity=0.974 Sum_probs=4.9
Q ss_pred hhHhhhhh
Q psy4 84 SAVGHTIG 91 (150)
Q Consensus 84 saVgH~ig 91 (150)
|-|||+||
T Consensus 118 HEiGHaLG 125 (163)
T d1i76a_ 118 HEFGHSLG 125 (163)
T ss_dssp HHHHHHHT
T ss_pred hhhhhhhc
Confidence 66666654
No 10
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.75 E-value=23 Score=23.07 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=3.6
Q ss_pred hhHhhhh
Q psy4 84 SAVGHTI 90 (150)
Q Consensus 84 saVgH~i 90 (150)
|-|||+|
T Consensus 117 HElGHaL 123 (159)
T d2ovxa1 117 HQFGHAL 123 (159)
T ss_dssp HHHHHHT
T ss_pred hhhcccc
Confidence 5555544
Done!