RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4
(150 letters)
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 38.7 bits (89), Expect = 4e-04
Identities = 14/113 (12%), Positives = 23/113 (20%)
Query: 19 RRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAG 78
++ P + A+P P P A + PQ M Q
Sbjct: 5 KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64
Query: 79 GVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGA 131
++ M + A P + A
Sbjct: 65 AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117
Score = 34.0 bits (77), Expect = 0.013
Identities = 19/106 (17%), Positives = 27/106 (25%), Gaps = 1/106 (0%)
Query: 24 PSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMA-ATAGGVAI 82
P + P A P+ Q Q PA QQ M V +
Sbjct: 31 PPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPL 90
Query: 83 GSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEP 128
+ M + ++ AAPA P+ G
Sbjct: 91 VDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136
Score = 27.5 bits (60), Expect = 1.9
Identities = 10/94 (10%), Positives = 17/94 (18%), Gaps = 1/94 (1%)
Query: 39 APRPTPATPAPVQAQPTMPAPMAAPQQ-GPGLMAQMAATAGGVAIGSAVGHTIGHAVTGM 97
+ P P+ P Q P A + G G
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 98 FSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGA 131
+ + + A + A
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 33.5 bits (76), Expect = 0.022
Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 15/128 (11%)
Query: 1 MVRRGRSP-SPVSSFHKMVRRGRSP--SPVSRGHSRASPAPAPRPTPATPAPVQAQPTMP 57
SP SP S SP SP S +S SP+ +P +P PT P
Sbjct: 1593 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652
Query: 58 APMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPA-P 116
+ + T+ + S +S + + + +P P
Sbjct: 1653 SYSPTSPAYSPTSPSYSPTSPSYSPTSPS-----------YSPTSPSYSPTSPNYSPTSP 1701
Query: 117 AYQQGSQS 124
+Y S
Sbjct: 1702 SYSPTSPG 1709
Score = 30.4 bits (68), Expect = 0.23
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 7 SPSPVSSFHKMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQG 66
+P S + G SP+ S +S SPA +P +P PT P+
Sbjct: 1527 GEAPTSPGFGVSSPGFSPT--SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584
Query: 67 PGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPA--APAPAYQQGSQS 124
+ T+ + S ++ T S +P +P+ +P+Y S S
Sbjct: 1585 SPTSPSYSPTSPSYSPTSP-----SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1639
Score = 29.3 bits (65), Expect = 0.54
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 7 SPSPVSSFHKMVRRGRSPSPVSRGHSRASPAPAPRP---TPATPAPVQAQPTMPAPMAAP 63
SPS + S SP S +S SP+ +P +P +PA Q
Sbjct: 1672 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731
Query: 64 QQ 65
+
Sbjct: 1732 SR 1733
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.061
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 43/144 (29%)
Query: 40 PRPTPATP----APVQAQPTMPA---------PMAAPQQG--PG-LMAQMAATAG---GV 80
P TP P+ + P + A G PG L + + G G+
Sbjct: 222 PSNTPDKDYLLSIPI----SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 81 --AIGSAVGHT-------IGHAVTGMFS-GSDSKEAAPAAPAAPAPAYQQGSQSAAE--P 128
A+ A + + A+T +F G EA P + P+ + S E P
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP--NTSLPPSILEDSLENNEGVP 335
Query: 129 T------GACAWEIKQFLQCANTQ 146
+ +++ ++ N+
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSH 359
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 30.5 bits (68), Expect = 0.19
Identities = 19/116 (16%), Positives = 25/116 (21%), Gaps = 2/116 (1%)
Query: 5 GRSPS--PVSSFHKMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAA 62
G S SS S + + A P P P P PA
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 63 PQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAPAY 118
P G G G+ + + A A P +
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117
Score = 27.0 bits (59), Expect = 2.4
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 25 SPVSRGHSRASPAPAPRPTPAT-PAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIG 83
V RG P+ + + A + T+P P P P G +
Sbjct: 13 GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQ 72
Query: 84 SAVGHTIGHAVTGM-FSGSDSKEAAPAAPAAPAPAYQ 119
+ G T + + ++ P APA+ PA
Sbjct: 73 RILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG 109
Score = 26.6 bits (58), Expect = 3.3
Identities = 9/94 (9%), Positives = 15/94 (15%), Gaps = 17/94 (18%)
Query: 37 APAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTG 96
+ + P + +P+ L A
Sbjct: 4 SHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPP--------- 54
Query: 97 MFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTG 130
A P + PTG
Sbjct: 55 --------APAAGNPPDTVTGDSVLQRILRGPTG 80
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.4 bits (68), Expect = 0.21
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 7 SP-SPVSSFHKMVRRGRSP--SPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPA-PMAA 62
SP SP S SP SP S +S SP+ +P +P PT P+ +
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Query: 63 PQQGP 67
P P
Sbjct: 1709 PSYSP 1713
Score = 28.9 bits (64), Expect = 0.73
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 7 SPSPVSSFHKMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAA-PQQ 65
SPS + S SP S +S SP+ +P +P PT P+ P
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655
Query: 66 GPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAPAAPA--APAPAYQQGSQ 123
P + + S + ++ T S +P +P+ +P+Y S
Sbjct: 1656 SP------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709
Query: 124 S 124
S
Sbjct: 1710 S 1710
Score = 26.6 bits (58), Expect = 4.1
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 3 RRGRSPSPVSSFHKMVRRGRSP-----SPVSRGHSRASPAPAPRPTPATPAPVQAQPTMP 57
S SP S + SP SP S +S SP+ +P +P PT P
Sbjct: 1657 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Query: 58 A-PMAAPQQGPG 68
+ +P P
Sbjct: 1717 SYSPTSPSYSPT 1728
Score = 26.2 bits (57), Expect = 5.3
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 9 SPVSSFHKMVRRGRSP--SPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPM-AAPQQ 65
SP S SP SP S +S SP+ +P +P PT P+ +P
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732
Query: 66 GPG 68
P
Sbjct: 1733 SPT 1735
Score = 25.8 bits (56), Expect = 7.4
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 4 RGRSP--SPVSSFHKMVRRGRSP-----SPVSRGHSRASPAPAPRPTPATPAPVQAQPTM 56
SP SP S + SP SP S +S SP+ +P +P PT
Sbjct: 1684 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1743
Query: 57 PA 58
P+
Sbjct: 1744 PS 1745
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase,
guanylyltransferase, complex, hydrolase, mRNA
processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Length = 461
Score = 30.1 bits (66), Expect = 0.25
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 16 KMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPT 55
M P P ++ S +P + P +P
Sbjct: 416 NMAGGSGRPLPSQSQNATLST---SKPVHSQPPSNDKEPK 452
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase;
BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A
4g0b_A
Length = 439
Score = 29.3 bits (66), Expect = 0.47
Identities = 13/52 (25%), Positives = 17/52 (32%)
Query: 4 RGRSPSPVSSFHKMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPT 55
RG + + + R R P H P PA +P T A T
Sbjct: 178 RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPET 229
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication,
ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus;
2.60A {Saccharomyces cerevisiae}
Length = 371
Score = 29.1 bits (64), Expect = 0.59
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 23 SPSPVSRGHSRASPAP--APRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAG 78
S +P+S R+ P + +P+ Q + ++ + P A+++
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSS 58
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 28.4 bits (62), Expect = 0.88
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 29 RGHSRASPAPAPRPTPATPAPVQ---AQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSA 85
+ + AP P TPA+ + A G + + A + +
Sbjct: 10 KSSMQIDNAPTPHNTPASVLNPSYLKNGNPVRAQAQEQDDKIGTINEEDILANQPLLLQS 69
Query: 86 VGHTIGHAVTGMFSG 100
+ +G ++ G SG
Sbjct: 70 IQDRLG-SLVGQDSG 83
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.4 bits (64), Expect = 0.93
Identities = 8/83 (9%), Positives = 14/83 (16%), Gaps = 1/83 (1%)
Query: 14 FHKMVRRGRSPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQM 73
H G P + A + + + P
Sbjct: 3 HHHHHSSGLVPRGSGMKETAA-AKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAE 61
Query: 74 AATAGGVAIGSAVGHTIGHAVTG 96
+ T +TG
Sbjct: 62 PSKLAKKLRAEPDMDTSFVGLTG 84
Score = 26.1 bits (58), Expect = 5.8
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 5/76 (6%)
Query: 3 RRGRSPSPVSSFHKMVRRGRSPSPVSRGHSRASPAPAP----RPTPATPAPVQAQPTMPA 58
S ++ K R+ + + AP P P + + A
Sbjct: 12 VPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAEPSKLAKKLRA 71
Query: 59 PMAAPQQGPGLM-AQM 73
GL Q+
Sbjct: 72 EPDMDTSFVGLTGGQI 87
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 28.2 bits (63), Expect = 1.2
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 8/78 (10%)
Query: 27 VSRGHSRASPAPAPRPT--PATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGS 84
+S ++ P P P P P P P P P PQQ P + AI
Sbjct: 2 LSNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIID 61
Query: 85 ---AVGHTIGHAVTGMFS 99
+G G+
Sbjct: 62 DYKVTSQVLGL---GING 76
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 1.5
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 8/64 (12%)
Query: 78 GGVAIGSAVG--HTIGHAVTGMFSGSDSK-----EAAPAAPAAPAPAYQQGSQ-SAAEPT 129
G GS +G + F + E+ +A S P
Sbjct: 1044 VGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPV 1103
Query: 130 GACA 133
GACA
Sbjct: 1104 GACA 1107
Score = 26.8 bits (59), Expect = 3.6
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 24/77 (31%)
Query: 40 PRPTPATPAPVQAQPTMPAPMAAPQ-------QGPGLMAQMAATA-GGVAIGSAVGHTI- 90
P Q + M+A GP + + A A ++ V TI
Sbjct: 1070 PVQNDIL------QESFINTMSAWVNMLLISSSGP-IKTPVGACATSVESVDIGV-ETIL 1121
Query: 91 -GHA---VTGMFSGSDS 103
G A + G G D
Sbjct: 1122 SGKARICIVG---GYDD 1135
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ;
2.0A {Escherichia coli} SCOP: e.22.1.2
Length = 408
Score = 27.6 bits (62), Expect = 1.8
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 68 GLMAQMAATAGGVAIGSAVGHTIGHAVTGMF 98
A GV A H +GH +T M
Sbjct: 269 ATQALNGLIGAGVPQDWAT-HMLGHELTAMH 298
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION,
membrane protein; HET: ATP; 2.10A {Rattus norvegicus}
SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 27.5 bits (60), Expect = 2.1
Identities = 10/58 (17%), Positives = 15/58 (25%)
Query: 23 SPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGV 80
+ SP + S A+ A +P P + Q A A
Sbjct: 38 AASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAAT 95
Score = 27.1 bits (59), Expect = 2.9
Identities = 18/93 (19%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 24 PSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIG 83
P P + P A A A PA + G G ++
Sbjct: 31 PPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS--------SLS 82
Query: 84 SAVGHTIGHAVTGMFSGSDSKEAAPAAPAAPAP 116
+AV T A FS + A A
Sbjct: 83 NAVKQT-TAAAAATFSEQVGGGSGGAGRGGAAA 114
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 26.8 bits (59), Expect = 2.4
Identities = 13/64 (20%), Positives = 16/64 (25%)
Query: 23 SPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAI 82
S + +G A PA + AP QP Q G G
Sbjct: 17 RGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQLDDGS 76
Query: 83 GSAV 86
G
Sbjct: 77 GRTY 80
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
amino acid biosynthesis, open form, form B, domain
movement, cyclase; HET: NAD; 2.20A {Staphylococcus
aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Length = 354
Score = 27.2 bits (61), Expect = 2.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 87 GHTIGHAV 94
GHT GHAV
Sbjct: 241 GHTFGHAV 248
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport,
rhesus protein, transpo protein; HET: BOG; 1.30A
{Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Length = 407
Score = 27.0 bits (60), Expect = 2.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 69 LMAQMAATAGGVAIGSAVG--HTIGHAVTGMFSG 100
+ AA AGGVAIGS +G V G+ G
Sbjct: 237 VDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGG 270
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 27.2 bits (61), Expect = 2.6
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 69 LM-AQMAATAGGVAIGSAVG----HTIGHAVTGMF 98
L + A G +A+G G H I H+++ ++
Sbjct: 256 LAWSATIALNGTMAVGRRGGEWACHRIEHSLSALY 290
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 27.2 bits (60), Expect = 2.7
Identities = 8/53 (15%), Positives = 11/53 (20%)
Query: 24 PSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAAT 76
P P P P P P + A + + A
Sbjct: 28 APPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKAE 80
Score = 26.8 bits (59), Expect = 3.5
Identities = 20/117 (17%), Positives = 30/117 (25%), Gaps = 12/117 (10%)
Query: 38 PAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGM 97
PA +P TP A A P A +
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPAL------GAAPTGDPKPKKNKKPKNPTPPR 55
Query: 98 FSGSDSKEAAPAAPAAPAPAYQQGSQSAAE------PTGACAWEIKQFLQCANTQSD 148
+G ++ AA A + + A PTGA + +Q +C
Sbjct: 56 PAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEG 112
Score = 26.8 bits (59), Expect = 3.8
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 24 PSPVSRGHSRASPAPAPRP-TPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAI 82
SP + G + A+ A P TPA PA A P P + + A VA
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65
Query: 83 GSAVGHTIGHAVTG 96
G A +
Sbjct: 66 GHATLREHLRDIKA 79
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino
acid biosynthesis, DHQS, O form J, domain movement,
cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans}
SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A*
1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Length = 393
Score = 26.5 bits (59), Expect = 3.5
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 87 GHTIGHAV 94
GH+IGHA+
Sbjct: 270 GHSIGHAI 277
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid
biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm,
lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Length = 343
Score = 26.1 bits (58), Expect = 4.6
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 87 GHTIGHAV 94
GHT GHA+
Sbjct: 230 GHTFGHAI 237
>3okf_A 3-dehydroquinate synthase; structural genomics, center for
structural genomics of infec diseases, csgid, NAD,
lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Length = 390
Score = 26.1 bits (58), Expect = 4.8
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 87 GHTIGHAV 94
GHT GHA+
Sbjct: 274 GHTFGHAI 281
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Length = 368
Score = 26.1 bits (58), Expect = 5.1
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 87 GHTIGHAV 94
GHTIGHA+
Sbjct: 245 GHTIGHAI 252
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 25.2 bits (55), Expect = 5.3
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 31 HSRASPAPAPRPTPATPAPVQAQPTMPAP 59
H + P P P P + +
Sbjct: 1 HMKERPPPVPNPDYNSLKKGSLVKNLHMT 29
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 25.4 bits (55), Expect = 6.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 31 HSRASPAPAPRPTPATPAPVQAQPTMPAPMAA 62
+ + P P+ + P+ V P MP P +
Sbjct: 107 VAANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 26.1 bits (58), Expect = 6.0
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 2 VRRGRSPSPVSSFHKMVRRGRSPSPVSRG---HSRASPAPAPRPTPATPAP-VQAQP 54
+ R + K R +P+PV R A+ AT QA P
Sbjct: 485 IPRKPFAEYIYKRIKQRDRTCTPTPVERAPYKGEVATLKSRVTKEDATAGTRKQAHP 541
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 25.9 bits (58), Expect = 6.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 76 TAGGVAIGSAVGHTIGHAVTG 96
T GGV G + H + V G
Sbjct: 252 TVGGVFSGLGIHHKKLNLVVG 272
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 26.1 bits (57), Expect = 6.4
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 34 ASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATA 77
A+ + A A PA A PAP A + TA
Sbjct: 104 AAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase,
family F/10 of glycosyl hydrolases, glycosyltransferase;
1.40A {Clostridium thermocellum} SCOP: c.1.8.3
Length = 347
Score = 25.8 bits (57), Expect = 6.6
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 45 ATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSK 104
TP P P P G L A A G+ IG+ V ++ SD
Sbjct: 7 QTPNPSVTPTQTPIP---TISGNALRD--YAEARGIKIGTCVN-------YPFYNNSDPT 54
Query: 105 EAA 107
+
Sbjct: 55 YNS 57
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 25.9 bits (57), Expect = 6.9
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 81 AIGSAVGHTIGHA 93
IG +GH I H
Sbjct: 523 GIGMVIGHEITHG 535
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 25.8 bits (57), Expect = 7.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 81 AIGSAVGHTIGHA 93
IG VGH + HA
Sbjct: 500 GIGVVVGHELTHA 512
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 25.6 bits (56), Expect = 7.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 23 SPSPVSRGHSRASPAPAPRPTPATPAPVQAQPTMPAP 59
P P ++ P P +P +P+P QA T P P
Sbjct: 313 EPKPSLEPNTSLEREPRPNSSP-SPSPGQASET-PHP 347
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; TIM barrel, methyltetrahydrofolate,
zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
1xdj_A 1xr2_A* 1xpg_A*
Length = 766
Score = 25.9 bits (57), Expect = 7.4
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 31 HSRASPAPAPRPTPATPAPVQAQPTMPAPMAA 62
H P P P + + Q P A
Sbjct: 5 HHHGKPIPNPLLGLDSTENLYFQQIDPFTKAY 36
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 25.8 bits (57), Expect = 7.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 81 AIGSAVGHTIGHA 93
IG+ +GH IGH
Sbjct: 522 GIGAVIGHEIGHG 534
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 25.8 bits (57), Expect = 7.8
Identities = 18/125 (14%), Positives = 28/125 (22%), Gaps = 15/125 (12%)
Query: 30 GHSRASPAPAPRPTPATPAPVQAQPTMPAP---------MAAPQQGPGLMAQMAATAGGV 80
G P P T ++P A
Sbjct: 506 GLEAPQPDPTYYHNNVTRGVSIFNESLPTIATLRVGVLSTTKGGSLDKAKALKEQLEKDG 565
Query: 81 AIGSAVGHTIGHAVTGMFSGSDSKE--AAPAAPAAPAPAYQQGSQSAAEPTGACAWEIKQ 138
+ + + V +S +D+ A A A +G+ S P G Q
Sbjct: 566 LKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAG----RPSQ 621
Query: 139 FLQCA 143
L
Sbjct: 622 ILTDG 626
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase;
HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A*
3fnm_A* 2nqo_A
Length = 377
Score = 25.3 bits (56), Expect = 9.3
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 30 GHSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHT 89
G S + P A P+ + G L + A+ G + G+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASAAS--YPPIKNTKVGLALSSHPLASEIGQKVLEEGGNA 59
Query: 90 IGHAVTGMF 98
I AV F
Sbjct: 60 IDAAVAIGF 68
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 25.5 bits (57), Expect = 9.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 76 TAGGVAIGSAVGHTIGHAVTG 96
AG A G+ VG + + G
Sbjct: 258 VAGAAAAGAGVGPQKLNYILG 278
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.123 0.371
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,111,970
Number of extensions: 116603
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 166
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)