RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4
         (150 letters)



>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
           {Chloroflexus aurantiacus [TaxId: 1108]}
          Length = 346

 Score = 27.2 bits (60), Expect = 0.90
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 49  PVQAQPTMPAPMAAPQQGPGLMAQMAATAGGVAIGSAVGHTIGHAVTGMFSGSDSKEAAP 108
           P++                 LM  +++   GV IG  +G+     +        S EA  
Sbjct: 80  PIEEMYEKNGGGRGA--LGVLMNDVSSKLLGVQIGGLLGYLAQRVLGQYDLSLLSAEATG 137

Query: 109 AAPA 112
            +  
Sbjct: 138 GSLY 141


>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
          {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 130

 Score = 25.1 bits (55), Expect = 2.3
 Identities = 12/34 (35%), Positives = 14/34 (41%)

Query: 31 HSRASPAPAPRPTPATPAPVQAQPTMPAPMAAPQ 64
             A+ +P     PAT       PT P P AAP 
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46


>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease
           {Klebsiella aerogenes [TaxId: 28451]}
          Length = 181

 Score = 24.4 bits (53), Expect = 5.0
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 30  GHSRASPAPAPRPTPATPAPVQAQP 54
           G    +P      +  TP PV  +P
Sbjct: 157 GMIAIAPMGDINASIPTPQPVHYRP 181


>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 406

 Score = 24.2 bits (52), Expect = 7.6
 Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 5/60 (8%)

Query: 77  AGGVAIGSAVGHTIG-----HAVTGMFSGSDSKEAAPAAPAAPAPAYQQGSQSAAEPTGA 131
            G VA+ S    T G                  E      +    +   G +    P  A
Sbjct: 138 TGNVALESMGFKTFGFAGGRADTWEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAA 197


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
          [TaxId: 562]}
          Length = 571

 Score = 24.5 bits (53), Expect = 7.8
 Identities = 11/41 (26%), Positives = 15/41 (36%)

Query: 35 SPAPAPRPTPATPAPVQAQPTMPAPMAAPQQGPGLMAQMAA 75
          +P        A P P  AQPT P  + AP      +  +  
Sbjct: 4  APEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKLNSLED 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.123    0.371 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,021
Number of extensions: 19558
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 25
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.0 bits)