BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy40
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
Query: 74 KLEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
+ EIG+PEA ATVKK+FVGG+K++ EE+DLR+YF Q+GT+ S +V +KET KRGFAF+
Sbjct: 95 RTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFV 154
Query: 133 EFNDYDVVDKI 143
EF+DYD VDKI
Sbjct: 155 EFDDYDPVDKI 165
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 78 GKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
G+PE V+K+F+GGL + D+ L+++F Q+G I V ++ + +T RGF FI ++
Sbjct: 11 GEPE---HVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSR 67
Query: 137 YDVVD 141
+VD
Sbjct: 68 AHMVD 72
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
Query: 74 KLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
+ EI P A ATVKK+FVGGL+D +E+ LREYF FG I SVN+V++K+TG KRGFAFI
Sbjct: 102 RQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161
Query: 133 EFNDYDVVDKI 143
EF+DYD VDKI
Sbjct: 162 EFDDYDPVDKI 172
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 73 DKLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D EI +PE ++K+F+GGL + DD L+ +F ++G I V ++ + +T RGF F
Sbjct: 13 DGEEITEPEQ---LRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGF 69
Query: 132 IEFNDYDVVD 141
I ++ ++D
Sbjct: 70 ITYSQSYMID 79
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 74 KLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
+ +I P A ATVKK+FVG LKD +E +R+YF FG I +N+V +KETG KRGFAF+
Sbjct: 109 RQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 168
Query: 133 EFNDYDVVDKI 143
EF+DYD VDK+
Sbjct: 169 EFDDYDPVDKV 179
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 77 IGKPEANATVKKMFVGGLKDQEED-DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
I +PE ++K+F+GGL + D +L+ +F ++G I V ++ + T RGF FI ++
Sbjct: 24 ITEPEH---MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYS 80
Query: 136 DYDVVD 141
++D
Sbjct: 81 HSSMID 86
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 13/96 (13%)
Query: 61 EVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFS 107
EVD + PH + + E KP A+ TVKK+FVGG+K D EE LREYF
Sbjct: 62 EVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFE 121
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G IES ++T+K++G KRGF F+ FND+D VDKI
Sbjct: 122 EYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKI 157
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL + E+ LR ++ Q+G + ++ + + RGF F+ F+ + VD
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVD 64
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 13/96 (13%)
Query: 61 EVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFS 107
EVD + PH + + E KP A+ TVKK+FVGG+K D EE LREYF
Sbjct: 62 EVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFE 121
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G I+S+ ++T+K++G KRGFAF+ F+D+D VDKI
Sbjct: 122 EYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKI 157
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL + E+ LR Y+ Q+GT+ ++ + + RGF F+ F+ + VD
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVD 64
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 13/99 (13%)
Query: 58 SEEEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLRE 104
S EVD + PH + + E GKP A+ TVKK+FVGG+K D EE LR+
Sbjct: 59 SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 105 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
YF+++G I+++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 119 YFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 87 KKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL Q E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 13/99 (13%)
Query: 58 SEEEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLRE 104
S +EVD + PH + + + +P A+ TVKK+FVGG+K D EED LRE
Sbjct: 64 STDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLRE 123
Query: 105 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
YF Q+G IE + ++T++ +G KRGFAF+ F D+D VDKI
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKI 162
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P ++K+F+GGL + D+ LRE+F Q+GT+ ++ + + RGF F+ + D
Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTD 66
Query: 139 VVD 141
VD
Sbjct: 67 EVD 69
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 6/90 (6%)
Query: 81 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
E N +VKK+FVGGLKD +E+ LREYF QFG + SV ++T+K TG +RGFAF+EF+DYD
Sbjct: 117 ETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDA 176
Query: 140 VDK--IRGFAFIEFNDYDVVDKIVCKYNIE 167
VDK ++ I++ DV I YN++
Sbjct: 177 VDKAILKKQHAIKYVHVDVKKSI---YNLD 203
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIR 144
++K+F+GGL E++L+ ++ Q+G + V ++ + T RGF FI + +VD+ +
Sbjct: 31 LRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQ 90
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 13/96 (13%)
Query: 61 EVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFS 107
EVD + PH + + E GKP A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 133
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G I+++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 134 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL + E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 76
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 13/96 (13%)
Query: 61 EVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFS 107
EVD + PH + + E GKP A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 133
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G I+++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 134 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL + E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 76
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 13/96 (13%)
Query: 61 EVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFS 107
EVD + PH + + E GKP A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 133
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G I+++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 134 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL + E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 76
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 13/99 (13%)
Query: 58 SEEEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLRE 104
S EVD + PH + + E GKP A+ TVKK+FVGG+K D EE LR+
Sbjct: 59 SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 118
Query: 105 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
YF ++G I+++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 119 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL + E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 13/96 (13%)
Query: 61 EVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFS 107
EVD + PH + + E GKP A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFE 133
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G I+++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 134 EYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL + E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 76
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 14/118 (11%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + +P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCK 163
Q+G IE + ++T++ +G KRGFAF+ F+D+D VDKI + N ++ V K +CK
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCK 183
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 139 VVD 141
VD
Sbjct: 67 EVD 69
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + +P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Q+G IE + ++T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 139 VVD 141
VD
Sbjct: 67 EVD 69
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + +P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Q+G IE + ++T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 139 VVD 141
VD
Sbjct: 67 EVD 69
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + +P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Q+G IE + ++T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 139 VVD 141
VD
Sbjct: 67 EVD 69
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + +P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Q+G IE + ++T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 139 VVD 141
VD
Sbjct: 67 EVD 69
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + +P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 66 EEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Q+G IE + ++T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 139 VVD 141
VD
Sbjct: 67 EVD 69
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + +P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 79 EEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYF 138
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+G IE++ ++ ++++G KRGFAF+ F+D+D VDKI
Sbjct: 139 EGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F Q+G + ++ + +T RGF F+ ++ +
Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79
Query: 139 VVD 141
VD
Sbjct: 80 EVD 82
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EE D + PH + + + +P A+A VKK+FVGGLK D E DL E+F
Sbjct: 59 EEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHF 118
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYN 165
SQFGT+E ++ +K++G KRGF F+ F ++D DK F + V V K V K +
Sbjct: 119 SQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Query: 166 I 166
I
Sbjct: 179 I 179
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 83 NATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
N+ + K+F+GGL Q E LR +F FGT+ +V N +T R F F+ +++ + D
Sbjct: 3 NSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + KP A+ TVKK+FVGG+K D EE +LR+YF
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G IE++ ++ ++++G KRGFAF+ F+D+D VDKI
Sbjct: 147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + KP A+ TVKK+FVGG+K D EE +LR+YF
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G IE++ ++ ++++G KRGFAF+ F+D+D VDKI
Sbjct: 147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + KP A+ TVKK+FVGG+K D EE +LR+YF
Sbjct: 87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G IE++ ++ ++++G KRGFAF+ F+D+D VDKI
Sbjct: 147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
E+VD + PH + + + +P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 66 EKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Q+G IE + ++T++ +G KRGFAF+ F+D++ VDKI
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 162
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
Query: 139 VVD 141
VD
Sbjct: 67 KVD 69
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EE D + PH + + + +P A+A VKK+FVGGLK D E DL E+F
Sbjct: 59 EEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHF 118
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYN 165
SQFG +E ++ +K++G KRGF F+ F +D DK F + V V K V K +
Sbjct: 119 SQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Query: 166 IE 167
I
Sbjct: 179 IH 180
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 83 NATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
N+ + K+F+GGL Q E LR +F FGT+ +V N +T R F F+ +++ + D
Sbjct: 3 NSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 13/97 (13%)
Query: 60 EEVDMEIPGPPH------------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
EEVD + PH + + + +P A+ TVKK+FVGG+K D EE LR+Y
Sbjct: 79 EEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYS 138
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+G IE++ ++ ++++G KRGFAF+ F+D+D VDKI
Sbjct: 139 ESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F Q+G + ++ + +T RGF F+ ++ +
Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79
Query: 139 VVD 141
VD
Sbjct: 80 EVD 82
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 80 PEANATVKKMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ KK+FVGGL +D++ YF QFG IE ++ +K+T RGF F+ F D
Sbjct: 111 PKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSED 170
Query: 139 VVDKIRGFAFIEFND 153
VVDK+ F E N+
Sbjct: 171 VVDKVCEIHFHEINN 185
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 88 KMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL Q + LR+YF ++G I ++ + T RGF F+ F+D + VDK+
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+K+FVGGL + E +LR++F ++G IES+N+ T+ +TG RGFAFI F + + +DK+
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 81 EANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
+A A K+FVGGL + +++++ YF QFG I V M +K+ ++GF FI F+ V
Sbjct: 130 KAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQV 189
Query: 140 V 140
V
Sbjct: 190 V 190
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 70 PHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRG 128
P DK + E+N + K+++V G++ D ED L EYF+++GT+ ++ +K T RG
Sbjct: 100 PRDDK---NRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 156
Query: 129 FAFIEFNDYDVVDK 142
F F+ F+D+D VD+
Sbjct: 157 FGFVTFDDHDSVDQ 170
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 86 VKKMFVGGLKDQEEDDL-REYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
++K+FVGGL DDL RE++SQFG I + ++ + T RGF F+ F+ VD
Sbjct: 22 LRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 57 QSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 115
Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF FG +ES+
Sbjct: 157 QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + +T +RGF FI F + + V KI
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 57 QSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 115
Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF FG +ES+
Sbjct: 157 QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + +T +RGF FI F + + V KI
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 57 QSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 115
Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF FG +ES+
Sbjct: 155 QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 209
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + +T +RGF FI F + + V KI
Sbjct: 210 ELPMDNKTNKRRGFCFITFKEEEPVKKI 237
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152
>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (Fragment) OS=Rattus
norvegicus GN=Hnrnpc PE=2 SV=1
Length = 158
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 57 QSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 115
Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF FG +ES+
Sbjct: 9 QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 63
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + +T +RGF FI F + + V KI
Sbjct: 64 ELPMDNKTNKRRGFCFITFKEEEPVKKI 91
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P + +P+ KK+FVGGL + +D+++YF QFG ++
Sbjct: 79 AQSRHELDSKTIDP-KVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 176
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 61 EVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVT 119
E D PG + P++ KMF+GGL Q ++ LREYF QFG ++ ++
Sbjct: 2 ETDAPQPG--------LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR 53
Query: 120 NKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDVVDKIV 161
+ T RGF F+ F D VDK+ + E + + K+
Sbjct: 54 DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 95
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
K+FVGG+ D + E+FSQ+GTI ++ +K+TG RGF F+ ++ D VD++
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 147 AFIEFNDYDV 156
FI+F D +
Sbjct: 304 KFIDFKDRKI 313
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 74 KLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
K E K + + KMF+GGL D ED+LREYF ++GT+ + ++ + TG RGF F+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 133 EFNDYDVVDKI 143
F VD++
Sbjct: 206 SFEKPSSVDEV 216
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P + +P+ KK+FVGGL + +D++ YF QFG ++
Sbjct: 79 AQSRHELDSKTIDP-KVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 176
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 61 EVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVT 119
E D PG + P++ KMF+GGL Q ++ LREYF QFG ++ ++
Sbjct: 2 ETDAPQPG--------LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR 53
Query: 120 NKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDVVDKIV 161
+ T RGF F+ F D VDK+ + E + + K+
Sbjct: 54 DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 95
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P + +P+ KK+FVGGL + +D++ YF QFG ++
Sbjct: 79 AQSRHELDSKTIDP-KVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 176
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 61 EVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVT 119
E D PG + P++ KMF+GGL Q ++ LREYF QFG ++ ++
Sbjct: 2 ETDAPQPG--------LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR 53
Query: 120 NKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDVVDKIV 161
+ T RGF F+ F D VDK+ + E + + K+
Sbjct: 54 DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 95
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ KK+FVGGL + +D+++YF QFG +E ++ +K T RGF F+ F +
Sbjct: 102 QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE 161
Query: 138 DVVDKIRGFAFIEFND 153
DVV+K+ F E N+
Sbjct: 162 DVVEKVCEIHFHEINN 177
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 88 KMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL Q D LR+YFS+FG I ++ + T RGF F+ F D VDK+ G
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 147 AFIEFNDYDVVDKIV 161
E + + K+
Sbjct: 82 PHHELDSKTIDPKVA 96
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ KK+FVGGL + +D+++YF QFG +E ++ +K T RGF F+ F +
Sbjct: 102 QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE 161
Query: 138 DVVDKIRGFAFIEFND 153
DVV+K+ F E N+
Sbjct: 162 DVVEKVCEIHFHEINN 177
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 88 KMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL Q D LR+YFS+FG I ++ + T RGF F+ F D VDK+ G
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 147 AFIEFNDYDVVDKIV 161
E + + K+
Sbjct: 82 PHHELDSKTIDPKVA 96
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF QFG IE++ + + + +RGF FI F + D V K+
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 63 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 120
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 121 ILFKDSSSVEKV 132
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 113 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 167
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 168 PMDTKTNERRGFCFITYTDEEPVKKL 193
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV--- 108
Query: 147 AFIEFNDYDVVDKIV 161
+E ++ + K++
Sbjct: 109 --LELKEHKLDGKLI 121
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KK+FVGGL D E+ ++EYF FG IE++ + + +T +RGF FI + D + V K+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV--- 205
Query: 147 AFIEFNDYDVVDKIV 161
+E ++ + K++
Sbjct: 206 --LELKEHKLDGKLI 218
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 92 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 146
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 147 PMDTKTNERRGFCFITYTDEEPVKKL 172
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D V+K+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKV--- 87
Query: 147 AFIEFNDYDVVDKIV 161
+E ++ + K++
Sbjct: 88 --LELKEHKLDGKLI 100
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 81 EANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
+ + T K+FVGGL D LR+YF FG IE ++T+++TG RG+ F+ D
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSA 64
Query: 140 VDK 142
D+
Sbjct: 65 ADR 67
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 91 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 145
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 146 PMDTKTNERRGFCFITYTDEEPVKKL 171
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV--- 86
Query: 147 AFIEFNDYDVVDKIV 161
+E ++ + K++
Sbjct: 87 --LELKEHKLDGKLI 99
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKV--- 83
Query: 147 AFIEFNDYDVVDKIV 161
+E N++ + K++
Sbjct: 84 --LETNEHKLDGKLI 96
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 58 SEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVN 116
+E ++D ++ P L+ +P KK+FVGGL + E+ +++YF FG IE++
Sbjct: 87 NEHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPETTEEQIKQYFGGFGEIENIE 141
Query: 117 MVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + +T +RGF F+ + + V K+
Sbjct: 142 LPIDTKTNERRGFCFVTYTGEEPVKKL 168
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 85 TVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK- 142
+ K+F+GGL + DD ++E + FG +++ N+V + TG +G+AF E+ D +V D+
Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316
Query: 143 IRGFAFIEFNDYDVV 157
I G ++ D ++
Sbjct: 317 IAGLNGMQLGDKKLL 331
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 85 TVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK- 142
+ K+F+GGL + DD ++E + FG +++ N+V + TG +G+AF E+ D +V D+
Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316
Query: 143 IRGFAFIEFNDYDVV 157
I G ++ D ++
Sbjct: 317 IAGLNGMQLGDKKLL 331
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 86 VKKMFVGGLKDQE--EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + + +RGF FI F + + V K+
Sbjct: 152 VKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 57 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 114
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 115 ILFKDAASVEKV 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,392,194
Number of Sequences: 539616
Number of extensions: 2646952
Number of successful extensions: 9783
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 8703
Number of HSP's gapped (non-prelim): 1244
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)