Query psy40
Match_columns 168
No_of_seqs 132 out of 1650
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 22:48:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy40.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/40hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 6.1E-29 1.3E-33 189.6 13.0 151 8-164 106-276 (346)
2 TIGR01645 half-pint poly-U bin 100.0 7.7E-28 1.7E-32 192.9 13.2 157 8-164 106-285 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.6E-27 1.4E-31 180.2 13.8 81 86-166 269-352 (352)
4 KOG0144|consensus 99.9 4.2E-26 9.1E-31 171.9 8.4 158 8-166 33-209 (510)
5 KOG0148|consensus 99.9 6.5E-25 1.4E-29 156.9 12.1 149 11-165 64-240 (321)
6 TIGR01622 SF-CC1 splicing fact 99.9 4.6E-25 1E-29 175.3 12.3 152 9-161 89-264 (457)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.1E-25 1.1E-29 169.7 11.5 149 10-164 4-172 (352)
8 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-24 2.8E-29 174.7 14.0 153 9-162 175-374 (509)
9 TIGR01628 PABP-1234 polyadenyl 99.9 3.3E-24 7.2E-29 174.2 11.8 155 10-165 179-366 (562)
10 TIGR01628 PABP-1234 polyadenyl 99.9 6.7E-24 1.5E-28 172.5 11.5 152 10-166 1-170 (562)
11 KOG0148|consensus 99.9 4.7E-24 1E-28 152.5 8.9 135 9-164 6-143 (321)
12 KOG0127|consensus 99.9 2.3E-23 5.1E-28 161.1 13.1 155 10-165 6-198 (678)
13 KOG0117|consensus 99.9 1.9E-23 4.1E-28 158.2 11.5 157 2-166 153-334 (506)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 7.3E-23 1.6E-27 164.0 12.5 147 10-165 139-309 (578)
15 PLN03134 glycine-rich RNA-bind 99.9 8E-22 1.7E-26 133.4 11.2 82 84-165 32-116 (144)
16 KOG4205|consensus 99.9 1.6E-22 3.4E-27 150.9 8.4 158 8-167 5-180 (311)
17 KOG0131|consensus 99.9 2.3E-22 5E-27 136.2 7.9 150 10-164 10-178 (203)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 8.8E-22 1.9E-26 157.2 12.6 150 10-163 3-174 (481)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.3E-21 2.8E-26 156.2 12.0 152 10-163 276-480 (481)
20 TIGR01648 hnRNP-R-Q heterogene 99.9 4E-21 8.7E-26 154.1 12.1 146 9-165 58-224 (578)
21 KOG0124|consensus 99.8 3.6E-21 7.8E-26 143.1 8.6 156 8-163 112-290 (544)
22 KOG0149|consensus 99.8 1E-20 2.3E-25 133.0 7.6 77 84-160 10-88 (247)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.8 4.9E-20 1.1E-24 148.3 11.3 153 10-162 296-501 (509)
24 KOG0109|consensus 99.8 1.3E-20 2.9E-25 136.1 6.3 139 9-163 2-150 (346)
25 KOG0145|consensus 99.8 8.2E-20 1.8E-24 130.4 7.0 148 10-163 42-209 (360)
26 TIGR01659 sex-lethal sex-letha 99.8 1.1E-18 2.4E-23 133.4 10.7 81 83-163 104-187 (346)
27 KOG0145|consensus 99.8 4.2E-18 9.2E-23 121.7 12.7 154 10-163 128-358 (360)
28 KOG0123|consensus 99.8 9.8E-19 2.1E-23 134.5 10.0 141 9-166 1-156 (369)
29 PF00076 RRM_1: RNA recognitio 99.8 2.3E-18 4.9E-23 102.6 9.1 67 89-156 1-69 (70)
30 KOG0117|consensus 99.8 3E-18 6.4E-23 130.2 11.1 148 8-166 82-251 (506)
31 KOG0122|consensus 99.8 2.7E-18 5.9E-23 121.5 8.7 80 85-164 188-270 (270)
32 KOG0127|consensus 99.7 2.8E-17 6.1E-22 127.7 12.5 80 86-165 292-380 (678)
33 KOG0113|consensus 99.7 1.4E-17 2.9E-22 121.0 9.9 79 83-161 98-179 (335)
34 PLN03120 nucleic acid binding 99.7 2.6E-17 5.6E-22 119.3 10.1 73 86-161 4-78 (260)
35 KOG0125|consensus 99.7 1.3E-17 2.9E-22 122.4 8.5 81 81-163 91-174 (376)
36 PF14259 RRM_6: RNA recognitio 99.7 6E-17 1.3E-21 96.7 9.1 67 89-156 1-69 (70)
37 TIGR01645 half-pint poly-U bin 99.7 4.1E-17 8.9E-22 131.5 10.1 78 84-161 105-185 (612)
38 KOG0110|consensus 99.7 8E-18 1.7E-22 134.0 5.5 154 11-164 517-694 (725)
39 TIGR01622 SF-CC1 splicing fact 99.7 2.7E-16 5.8E-21 125.2 11.8 80 84-163 87-168 (457)
40 KOG4207|consensus 99.7 6.7E-17 1.5E-21 112.0 6.7 76 86-161 13-91 (256)
41 KOG0121|consensus 99.7 1.4E-16 3.1E-21 102.4 7.1 78 83-160 33-113 (153)
42 KOG0123|consensus 99.7 1.7E-16 3.7E-21 122.2 8.3 154 11-165 78-248 (369)
43 PLN03213 repressor of silencin 99.7 3.4E-16 7.3E-21 120.9 9.5 76 85-164 9-89 (759)
44 KOG0126|consensus 99.7 5.6E-18 1.2E-22 115.1 -0.2 74 85-158 34-110 (219)
45 KOG0111|consensus 99.7 5.2E-17 1.1E-21 113.6 4.3 81 84-164 8-91 (298)
46 PLN03121 nucleic acid binding 99.7 9.5E-16 2.1E-20 109.6 10.3 73 85-160 4-78 (243)
47 KOG0147|consensus 99.6 2E-16 4.2E-21 123.1 5.3 148 10-160 180-355 (549)
48 smart00362 RRM_2 RNA recogniti 99.6 3.2E-15 6.8E-20 88.7 9.0 69 88-158 1-72 (72)
49 KOG0114|consensus 99.6 3.9E-15 8.5E-20 92.4 9.1 76 85-163 17-95 (124)
50 smart00360 RRM RNA recognition 99.6 5.1E-15 1.1E-19 87.5 8.2 68 91-158 1-71 (71)
51 KOG0131|consensus 99.6 1.5E-15 3.3E-20 103.3 6.1 77 85-161 8-87 (203)
52 KOG0107|consensus 99.6 3.6E-15 7.8E-20 100.9 7.5 73 86-163 10-85 (195)
53 COG0724 RNA-binding proteins ( 99.6 8.2E-15 1.8E-19 108.3 10.1 76 86-161 115-193 (306)
54 KOG0144|consensus 99.6 4.8E-15 1E-19 112.6 8.2 83 84-166 32-120 (510)
55 KOG0110|consensus 99.6 2.7E-14 6E-19 114.1 12.2 151 11-161 387-596 (725)
56 KOG0129|consensus 99.6 1.6E-14 3.5E-19 112.0 9.8 145 8-152 258-438 (520)
57 KOG0108|consensus 99.6 1E-14 2.2E-19 113.6 7.7 78 87-164 19-99 (435)
58 KOG0130|consensus 99.6 1.8E-14 3.9E-19 93.7 7.0 80 83-162 69-151 (170)
59 cd00590 RRM RRM (RNA recogniti 99.5 9.8E-14 2.1E-18 82.6 9.6 71 88-159 1-74 (74)
60 KOG4205|consensus 99.5 1E-14 2.2E-19 109.2 4.9 81 85-165 5-87 (311)
61 smart00361 RRM_1 RNA recogniti 99.5 8E-14 1.7E-18 83.1 7.6 59 99-157 2-69 (70)
62 KOG4206|consensus 99.5 3.7E-13 8.1E-18 94.8 11.1 146 11-161 11-220 (221)
63 KOG0415|consensus 99.5 6.8E-14 1.5E-18 104.2 7.4 79 84-162 237-318 (479)
64 KOG0105|consensus 99.5 1.5E-13 3.2E-18 94.1 6.7 75 85-162 5-82 (241)
65 PF13893 RRM_5: RNA recognitio 99.5 4.3E-13 9.4E-18 76.4 7.6 54 102-160 1-56 (56)
66 KOG0124|consensus 99.5 7.3E-14 1.6E-18 104.5 5.1 74 87-160 114-190 (544)
67 KOG0146|consensus 99.4 1.3E-13 2.9E-18 99.2 5.7 81 84-164 283-366 (371)
68 KOG0153|consensus 99.4 4E-13 8.6E-18 99.8 8.1 77 81-163 223-303 (377)
69 KOG4208|consensus 99.4 4.9E-13 1.1E-17 92.9 8.0 79 85-163 48-130 (214)
70 KOG0105|consensus 99.4 1.3E-12 2.8E-17 89.4 9.9 138 8-152 5-176 (241)
71 KOG4206|consensus 99.4 1.3E-12 2.8E-17 92.0 8.3 79 84-165 7-92 (221)
72 KOG4212|consensus 99.4 4.8E-12 1E-16 96.8 8.8 76 84-160 42-121 (608)
73 KOG0109|consensus 99.3 1.5E-12 3.2E-17 94.8 5.4 70 87-164 3-75 (346)
74 KOG4211|consensus 99.3 2E-11 4.4E-16 94.5 10.9 149 11-160 12-179 (510)
75 KOG0106|consensus 99.3 1.4E-12 2.9E-17 92.6 4.0 143 9-159 1-167 (216)
76 KOG0132|consensus 99.3 1.5E-11 3.2E-16 99.7 7.4 74 85-164 420-496 (894)
77 KOG4661|consensus 99.3 1.6E-11 3.4E-16 96.9 7.2 78 85-162 404-484 (940)
78 KOG0146|consensus 99.2 3.6E-11 7.9E-16 86.8 6.3 81 85-166 18-104 (371)
79 KOG1457|consensus 99.2 5.6E-11 1.2E-15 83.8 6.6 140 8-151 33-273 (284)
80 KOG4210|consensus 99.2 2.5E-11 5.4E-16 90.7 4.8 157 9-165 88-266 (285)
81 KOG4212|consensus 99.1 1.4E-10 3.1E-15 88.9 6.9 75 81-160 531-608 (608)
82 KOG0226|consensus 99.1 7E-11 1.5E-15 84.7 4.7 90 74-163 178-270 (290)
83 KOG1548|consensus 99.1 2E-09 4.3E-14 80.3 10.0 149 7-159 131-348 (382)
84 KOG0116|consensus 99.1 5.9E-10 1.3E-14 86.8 7.4 78 85-162 287-366 (419)
85 KOG0533|consensus 99.0 1.1E-09 2.5E-14 79.3 8.0 76 85-161 82-160 (243)
86 PF04059 RRM_2: RNA recognitio 99.0 4.5E-09 9.8E-14 65.9 8.5 76 87-162 2-86 (97)
87 KOG4209|consensus 99.0 1.2E-09 2.7E-14 79.2 5.6 77 84-160 99-177 (231)
88 KOG0151|consensus 98.9 5.2E-09 1.1E-13 84.6 6.3 79 84-162 172-256 (877)
89 KOG1190|consensus 98.8 7.6E-08 1.6E-12 73.5 11.8 71 86-161 297-371 (492)
90 KOG4454|consensus 98.8 1.5E-09 3.3E-14 76.4 2.1 73 85-159 8-83 (267)
91 KOG4660|consensus 98.8 4.7E-09 1E-13 82.7 4.4 69 83-156 72-142 (549)
92 COG0724 RNA-binding proteins ( 98.8 1.7E-08 3.7E-13 74.4 6.8 136 10-145 116-285 (306)
93 KOG0120|consensus 98.8 2.9E-08 6.3E-13 78.6 7.9 153 9-161 289-490 (500)
94 KOG0120|consensus 98.7 3.6E-08 7.8E-13 78.1 7.5 81 84-164 287-370 (500)
95 KOG0112|consensus 98.7 3E-08 6.6E-13 82.0 5.7 147 10-162 373-530 (975)
96 KOG1548|consensus 98.7 1E-07 2.2E-12 71.4 7.9 77 85-162 133-220 (382)
97 KOG0106|consensus 98.7 2.6E-08 5.7E-13 70.9 4.0 68 87-162 2-72 (216)
98 KOG4211|consensus 98.6 2E-07 4.4E-12 72.7 8.4 75 86-163 10-86 (510)
99 KOG1457|consensus 98.6 4.9E-07 1.1E-11 64.2 9.6 81 83-163 31-118 (284)
100 KOG1190|consensus 98.5 1.9E-06 4.1E-11 66.1 10.7 149 10-162 298-490 (492)
101 KOG0128|consensus 98.5 3.6E-08 7.9E-13 81.2 1.4 130 9-162 667-814 (881)
102 KOG1995|consensus 98.5 1.6E-07 3.5E-12 70.7 4.6 85 84-168 64-159 (351)
103 PF11608 Limkain-b1: Limkain b 98.4 1.7E-06 3.7E-11 52.2 7.2 65 87-161 3-75 (90)
104 KOG1365|consensus 98.4 1.7E-06 3.6E-11 66.0 8.9 148 12-160 164-359 (508)
105 KOG0147|consensus 98.4 1E-07 2.2E-12 75.2 1.8 76 86-161 179-256 (549)
106 KOG0121|consensus 98.4 3.8E-07 8.3E-12 59.3 3.4 50 10-59 37-101 (153)
107 PF05172 Nup35_RRM: Nup53/35/4 98.3 7.4E-06 1.6E-10 51.8 7.9 78 86-163 6-92 (100)
108 PF14605 Nup35_RRM_2: Nup53/35 98.3 5.2E-06 1.1E-10 46.4 6.1 52 87-144 2-53 (53)
109 PLN03134 glycine-rich RNA-bind 98.2 5.8E-07 1.3E-11 60.9 2.1 53 8-60 33-100 (144)
110 KOG0149|consensus 98.2 9E-07 2E-11 63.2 2.9 40 8-47 11-50 (247)
111 PF00076 RRM_1: RNA recognitio 98.1 6.8E-07 1.5E-11 52.5 0.5 49 12-60 1-63 (70)
112 PF08777 RRM_3: RNA binding mo 98.1 1.2E-05 2.5E-10 51.6 6.1 53 87-145 2-55 (105)
113 KOG4849|consensus 98.1 2.8E-06 6E-11 64.1 3.6 71 86-156 80-154 (498)
114 KOG3152|consensus 98.1 2.2E-06 4.8E-11 61.9 2.5 71 85-155 73-157 (278)
115 PLN03120 nucleic acid binding 98.0 2.4E-06 5.1E-11 62.7 2.2 51 9-60 4-66 (260)
116 KOG0107|consensus 98.0 4.4E-06 9.5E-11 57.2 2.9 54 9-62 10-73 (195)
117 KOG2193|consensus 98.0 3.6E-07 7.7E-12 70.3 -3.6 140 9-160 1-154 (584)
118 KOG4454|consensus 97.9 7.4E-07 1.6E-11 63.1 -2.0 116 10-145 10-143 (267)
119 COG5175 MOT2 Transcriptional r 97.9 4.1E-05 8.9E-10 57.7 6.3 77 87-163 115-203 (480)
120 PLN03213 repressor of silencin 97.8 7.8E-06 1.7E-10 64.4 1.9 58 5-62 6-76 (759)
121 KOG2314|consensus 97.8 7.7E-05 1.7E-09 59.7 6.6 73 86-159 58-140 (698)
122 KOG1456|consensus 97.8 0.00046 1E-08 52.8 10.1 143 11-163 33-199 (494)
123 KOG1456|consensus 97.7 0.00033 7.2E-09 53.6 9.0 76 82-162 283-362 (494)
124 KOG1855|consensus 97.6 8.6E-05 1.9E-09 57.5 4.6 65 82-146 227-305 (484)
125 KOG0125|consensus 97.6 7.1E-05 1.5E-09 56.2 3.7 67 9-75 96-175 (376)
126 PF08952 DUF1866: Domain of un 97.6 0.0004 8.7E-09 46.6 6.7 70 85-162 26-106 (146)
127 KOG4307|consensus 97.6 0.0003 6.4E-09 57.8 6.9 71 87-158 868-942 (944)
128 KOG0114|consensus 97.5 6.9E-05 1.5E-09 47.1 2.6 54 7-60 16-81 (124)
129 smart00362 RRM_2 RNA recogniti 97.5 7.3E-05 1.6E-09 43.3 2.3 47 11-57 1-60 (72)
130 KOG0132|consensus 97.5 9.2E-05 2E-09 61.2 3.5 96 10-107 422-528 (894)
131 PLN03121 nucleic acid binding 97.5 5.9E-05 1.3E-09 54.7 2.2 45 9-53 5-61 (243)
132 PF14259 RRM_6: RNA recognitio 97.5 4.6E-05 9.9E-10 44.8 1.4 46 12-57 1-60 (70)
133 KOG4285|consensus 97.5 0.0014 3E-08 48.9 8.7 75 86-166 197-273 (350)
134 KOG0129|consensus 97.4 0.00071 1.5E-08 53.7 7.3 61 84-145 257-324 (520)
135 KOG1365|consensus 97.4 0.0016 3.6E-08 50.1 8.9 142 13-156 64-235 (508)
136 KOG0113|consensus 97.3 0.00011 2.4E-09 54.4 1.8 55 6-60 98-167 (335)
137 KOG0128|consensus 97.3 1.1E-05 2.4E-10 67.0 -3.9 72 85-156 666-738 (881)
138 KOG0126|consensus 97.2 0.00015 3.2E-09 50.3 1.6 38 10-47 36-73 (219)
139 KOG4307|consensus 97.2 0.0015 3.2E-08 53.9 6.8 156 3-159 303-510 (944)
140 KOG0115|consensus 97.1 0.00062 1.3E-08 49.6 3.8 73 87-160 32-111 (275)
141 KOG2202|consensus 97.0 0.00029 6.3E-09 51.2 1.5 58 102-160 85-145 (260)
142 cd00590 RRM RRM (RNA recogniti 97.0 0.00051 1.1E-08 39.8 2.3 33 11-43 1-33 (74)
143 PF10309 DUF2414: Protein of u 97.0 0.0088 1.9E-07 34.3 6.8 52 87-145 6-60 (62)
144 KOG4660|consensus 96.8 0.0023 5E-08 51.3 4.9 144 10-160 76-247 (549)
145 KOG2193|consensus 96.8 0.0011 2.5E-08 51.6 2.8 73 87-165 2-78 (584)
146 KOG4207|consensus 96.6 0.0016 3.4E-08 46.2 2.4 57 8-64 12-83 (256)
147 KOG0111|consensus 96.6 0.00078 1.7E-08 48.1 0.7 68 4-71 5-87 (298)
148 PF08675 RNA_bind: RNA binding 96.5 0.025 5.3E-07 34.4 6.6 50 87-145 10-60 (87)
149 KOG1996|consensus 96.4 0.016 3.4E-07 43.4 6.4 58 99-156 300-359 (378)
150 KOG2068|consensus 96.3 0.0018 3.9E-08 49.0 1.3 78 87-164 78-164 (327)
151 KOG4676|consensus 96.3 0.0038 8.2E-08 48.2 2.9 63 87-153 152-215 (479)
152 smart00360 RRM RNA recognition 96.3 0.0023 5E-08 36.6 1.4 30 14-43 1-30 (71)
153 KOG4676|consensus 96.1 0.0092 2E-07 46.2 4.3 73 87-159 8-85 (479)
154 KOG0108|consensus 96.1 0.0042 9.1E-08 49.4 2.3 51 10-60 19-84 (435)
155 KOG0112|consensus 96.0 0.0016 3.4E-08 55.0 -0.1 76 84-160 370-448 (975)
156 PF07576 BRAP2: BRCA1-associat 95.9 0.21 4.7E-06 32.2 9.3 65 87-153 14-81 (110)
157 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.014 3E-07 41.0 4.1 67 86-152 7-81 (176)
158 KOG0533|consensus 95.9 0.0069 1.5E-07 44.4 2.6 51 10-60 84-148 (243)
159 KOG2416|consensus 95.7 0.016 3.4E-07 47.2 4.3 75 81-161 439-520 (718)
160 KOG2135|consensus 95.7 0.006 1.3E-07 48.2 1.9 70 87-162 373-445 (526)
161 KOG0122|consensus 95.7 0.0072 1.6E-07 43.9 2.1 53 8-60 188-255 (270)
162 KOG0153|consensus 95.4 0.014 3.1E-07 44.4 2.9 51 8-58 227-286 (377)
163 PF15023 DUF4523: Protein of u 95.0 0.27 5.9E-06 33.1 7.6 71 84-161 84-160 (166)
164 KOG0116|consensus 94.5 0.022 4.8E-07 45.1 1.8 47 10-56 289-350 (419)
165 KOG4210|consensus 93.9 0.056 1.2E-06 40.8 2.8 72 85-156 87-160 (285)
166 PF04847 Calcipressin: Calcipr 93.4 0.37 8.1E-06 34.0 6.1 59 98-162 8-70 (184)
167 KOG0130|consensus 92.4 0.12 2.7E-06 34.3 2.4 54 11-64 74-142 (170)
168 KOG0151|consensus 92.2 0.13 2.8E-06 43.0 2.9 53 10-62 175-245 (877)
169 KOG4574|consensus 92.2 0.1 2.2E-06 44.5 2.2 70 88-163 300-374 (1007)
170 KOG2253|consensus 92.2 0.14 3.1E-06 42.3 3.0 68 82-158 36-106 (668)
171 PF11608 Limkain-b1: Limkain b 91.6 0.19 4.1E-06 30.7 2.3 58 9-66 2-69 (90)
172 KOG0804|consensus 90.8 1 2.2E-05 35.9 6.3 66 86-153 74-142 (493)
173 KOG3152|consensus 89.9 0.48 1E-05 34.9 3.6 39 9-47 74-112 (278)
174 KOG2591|consensus 89.7 1.2 2.7E-05 36.5 6.1 67 83-156 172-244 (684)
175 PF07530 PRE_C2HC: Associated 89.5 0.82 1.8E-05 26.7 3.8 64 100-165 2-67 (68)
176 KOG2318|consensus 89.1 3.2 6.9E-05 34.3 7.9 78 83-160 171-305 (650)
177 PF03880 DbpA: DbpA RNA bindin 88.0 3.9 8.4E-05 24.1 6.7 55 97-160 13-74 (74)
178 PF11767 SET_assoc: Histone ly 87.9 3.7 8E-05 23.8 6.5 51 97-156 12-63 (66)
179 KOG4208|consensus 87.8 0.48 1E-05 33.8 2.3 57 8-64 48-120 (214)
180 KOG0226|consensus 86.3 0.35 7.6E-06 35.7 1.1 56 11-66 192-262 (290)
181 PF08777 RRM_3: RNA binding mo 85.2 0.76 1.6E-05 29.3 2.1 49 11-59 3-60 (105)
182 KOG4483|consensus 84.5 5.4 0.00012 31.6 6.7 65 85-156 390-456 (528)
183 smart00596 PRE_C2HC PRE_C2HC d 83.7 1.9 4.2E-05 25.2 3.1 64 100-165 2-67 (69)
184 KOG0415|consensus 83.1 1.3 2.7E-05 34.5 2.8 57 10-66 240-311 (479)
185 PF15513 DUF4651: Domain of un 82.1 5.4 0.00012 22.8 4.4 19 100-118 9-27 (62)
186 KOG4209|consensus 81.7 0.82 1.8E-05 33.5 1.4 37 7-43 99-135 (231)
187 KOG4849|consensus 81.0 2 4.2E-05 33.3 3.2 24 11-34 82-105 (498)
188 KOG4661|consensus 80.5 1.1 2.4E-05 37.0 1.8 39 9-47 405-443 (940)
189 KOG2891|consensus 79.6 2.2 4.9E-05 32.0 3.0 36 84-119 147-195 (445)
190 PF10567 Nab6_mRNP_bdg: RNA-re 78.0 6.1 0.00013 30.0 4.8 60 83-142 12-79 (309)
191 PF03468 XS: XS domain; Inter 72.6 6.2 0.00013 25.7 3.4 56 88-146 10-76 (116)
192 TIGR03636 L23_arch archaeal ri 68.1 23 0.00051 21.2 5.1 54 88-144 15-71 (77)
193 PRK14548 50S ribosomal protein 66.9 26 0.00055 21.4 5.0 54 88-144 22-78 (84)
194 KOG4410|consensus 64.1 23 0.0005 26.9 5.2 47 86-138 330-378 (396)
195 KOG0115|consensus 62.1 4.3 9.3E-05 30.1 1.1 38 10-47 32-69 (275)
196 TIGR02542 B_forsyth_147 Bacter 58.9 25 0.00055 22.9 4.1 110 24-138 16-130 (145)
197 KOG1995|consensus 55.9 8.6 0.00019 29.9 1.9 55 9-63 66-143 (351)
198 KOG0156|consensus 55.8 26 0.00057 28.8 4.8 58 90-156 36-97 (489)
199 PF07292 NID: Nmi/IFP 35 domai 53.1 8 0.00017 23.9 1.1 23 85-107 51-74 (88)
200 KOG4008|consensus 46.5 21 0.00045 26.3 2.5 32 85-116 39-71 (261)
201 KOG1295|consensus 46.3 31 0.00066 27.3 3.5 66 86-151 7-77 (376)
202 COG5193 LHP1 La protein, small 44.8 8.4 0.00018 30.5 0.3 61 85-145 173-244 (438)
203 KOG2891|consensus 44.6 11 0.00024 28.5 0.9 44 4-47 144-199 (445)
204 KOG2295|consensus 41.0 3.6 7.7E-05 33.9 -2.2 72 85-156 230-303 (648)
205 COG5638 Uncharacterized conser 40.3 55 0.0012 26.3 4.1 40 80-119 140-185 (622)
206 COG0030 KsgA Dimethyladenosine 39.9 19 0.00041 27.0 1.5 33 11-43 97-129 (259)
207 PF14111 DUF4283: Domain of un 35.7 62 0.0013 21.5 3.5 31 89-119 107-139 (153)
208 PF13046 DUF3906: Protein of u 35.4 51 0.0011 19.0 2.5 33 98-132 31-63 (64)
209 PHA01632 hypothetical protein 32.9 48 0.001 18.5 2.0 20 89-108 19-39 (64)
210 PF11823 DUF3343: Protein of u 31.6 60 0.0013 18.8 2.5 25 129-153 3-28 (73)
211 PF11411 DNA_ligase_IV: DNA li 30.9 46 0.001 16.8 1.6 14 97-110 21-34 (36)
212 TIGR01873 cas_CT1978 CRISPR-as 29.5 30 0.00066 21.3 1.0 37 11-47 27-63 (87)
213 PF15407 Spo7_2_N: Sporulation 29.4 25 0.00054 20.5 0.6 22 85-106 26-48 (67)
214 PRK05738 rplW 50S ribosomal pr 28.7 1.5E+02 0.0032 18.3 4.0 33 88-120 21-56 (92)
215 PRK11558 putative ssRNA endonu 27.6 35 0.00075 21.5 1.0 36 11-47 29-64 (97)
216 PF08206 OB_RNB: Ribonuclease 26.9 47 0.001 18.4 1.4 11 126-136 7-17 (58)
217 PF10281 Ish1: Putative stress 26.8 60 0.0013 16.2 1.7 16 97-112 4-19 (38)
218 PTZ00191 60S ribosomal protein 26.6 2.1E+02 0.0046 19.5 5.4 51 88-141 83-136 (145)
219 KOG4365|consensus 26.5 12 0.00026 30.1 -1.4 69 87-156 4-74 (572)
220 KOG4019|consensus 26.3 60 0.0013 23.0 2.1 70 87-162 11-89 (193)
221 KOG1855|consensus 25.8 39 0.00085 27.2 1.3 35 9-43 231-265 (484)
222 PF11230 DUF3029: Protein of u 25.2 81 0.0018 25.8 2.9 83 7-109 35-125 (487)
223 KOG4213|consensus 25.1 1.3E+02 0.0029 21.3 3.6 57 86-147 111-170 (205)
224 PF09707 Cas_Cas2CT1978: CRISP 25.0 1.7E+02 0.0038 17.9 4.3 46 87-135 26-72 (86)
225 PRK13259 regulatory protein Sp 24.3 1.8E+02 0.004 18.2 3.8 26 111-136 2-27 (94)
226 PF03672 UPF0154: Uncharacteri 24.1 75 0.0016 18.3 1.9 17 95-111 30-46 (64)
227 PRK00523 hypothetical protein; 23.7 75 0.0016 18.8 1.9 17 95-111 38-54 (72)
228 PF04026 SpoVG: SpoVG; InterP 22.8 1.9E+02 0.0041 17.6 3.9 26 111-136 2-27 (84)
229 PF01479 S4: S4 domain; Inter 22.7 1.3E+02 0.0028 15.5 2.7 21 136-156 15-35 (48)
230 CHL00030 rpl23 ribosomal prote 22.6 2E+02 0.0044 17.8 4.9 33 88-120 20-55 (93)
231 PRK01844 hypothetical protein; 22.2 85 0.0018 18.6 1.9 17 95-111 37-53 (72)
232 PRK15464 cold shock-like prote 21.4 49 0.0011 19.3 0.8 11 126-136 15-25 (70)
233 PF00398 RrnaAD: Ribosomal RNA 20.4 1.3E+02 0.0027 22.4 3.0 22 86-107 97-119 (262)
234 PRK15463 cold shock-like prote 20.2 56 0.0012 19.0 0.9 11 126-136 15-25 (70)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=6.1e-29 Score=189.61 Aligned_cols=151 Identities=14% Similarity=0.087 Sum_probs=123.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHM 72 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 72 (168)
.-+||||+|||+++++++|+++|+.||.+. .|+|.|.++..+.+|+..++........+....+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 346999999999999999999999999864 36666777778888887776655544444333222
Q ss_pred CCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCce
Q psy40 73 DKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIE 150 (168)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~ 150 (168)
+.. .....++|||+|||+ +|+++|+++|++||+|..+++++|+.+++++|||||+|.+.++|++||+ +++..
T Consensus 186 p~~------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 186 PGG------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ccc------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 211 122357899999999 9999999999999999999999999999999999999999999999998 99998
Q ss_pred eCC--cee-Eeeecccc
Q psy40 151 FND--YDV-VDKIVCKY 164 (168)
Q Consensus 151 i~G--~~i-v~~a~~~~ 164 (168)
+.| ++| |+++..+.
T Consensus 260 ~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEHG 276 (346)
T ss_pred cCCCceeEEEEECCccc
Confidence 876 678 99887643
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=7.7e-28 Score=192.86 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=125.1
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhhccCCCCCCCC-
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPH- 71 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 71 (168)
.+++||||||++.++++.|++.|..||.+.. +||.|.++..+.+|+..+++.......+.....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4679999999999999999999999998744 556666666888888877665544333322211
Q ss_pred -CCCccc---CCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-
Q psy40 72 -MDKLEI---GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG- 145 (168)
Q Consensus 72 -~~~~~~---~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~- 145 (168)
.+.... .........++|||+|||+ +++++|+++|+.||.|.++++++|+.+|+++|||||+|++.++|.+||+
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 111100 0111223457999999999 9999999999999999999999999899999999999999999999998
Q ss_pred hCCceeCCcee-Eeeecccc
Q psy40 146 FAFIEFNDYDV-VDKIVCKY 164 (168)
Q Consensus 146 ~~~~~i~G~~i-v~~a~~~~ 164 (168)
||+..|+|+.| |.++.+++
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999 99997644
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=6.6e-27 Score=180.15 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=76.8
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecc
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~ 162 (168)
+.+|||+|||+ +++++|+++|++||.|.+++|++|+.||+++|||||+|.+.++|.+||. |++..|+||+| |.|..+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 34799999999 9999999999999999999999999999999999999999999999998 99999999999 999988
Q ss_pred cccC
Q psy40 163 KYNI 166 (168)
Q Consensus 163 ~~~~ 166 (168)
|..+
T Consensus 349 ~~~~ 352 (352)
T TIGR01661 349 KAYR 352 (352)
T ss_pred CCCC
Confidence 8653
No 4
>KOG0144|consensus
Probab=99.93 E-value=4.2e-26 Score=171.87 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=127.7
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccceeEEEecCCc-----------cchHHHHHhhhhhhccCCCCCCCCCCCcc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT-----------INNKAMEEAQSEEEVDMEIPGPPHMDKLE 76 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
..-++|||.+|..++|.+|+++|+++|.+..+.++.|+-+ ...+...++.++++...+++......+..
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3458999999999999999999999999988888877766 34445555666777777777665554443
Q ss_pred cCCCCCC--CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCc-ee
Q psy40 77 IGKPEAN--ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFI-EF 151 (168)
Q Consensus 77 ~~~~~~~--~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~-~i 151 (168)
....+.. ...++||||.|+. +||.+++++|++||.|++|+|.+|. .+.+||||||.|++++.|..||+ ||+. .+
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceee
Confidence 3332222 2368999999999 9999999999999999999999997 49999999999999999999998 8874 34
Q ss_pred C--Ccee-EeeecccccC
Q psy40 152 N--DYDV-VDKIVCKYNI 166 (168)
Q Consensus 152 ~--G~~i-v~~a~~~~~~ 166 (168)
. ..+| |+||.++.+.
T Consensus 192 eGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 192 EGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ccCCCceEEEecccCCCc
Confidence 4 4778 9999887654
No 5
>KOG0148|consensus
Probab=99.93 E-value=6.5e-25 Score=156.87 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=127.1
Q ss_pred EEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhhhccCCCCCCCCCCCc
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEEEVDMEIPGPPHMDKL 75 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 75 (168)
-||||.|+..++.+.|++.|..||++.+|.|+.+..+ .+..|+..|++.-.....++...+..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 6999999999999999999999999999999988776 7888888888887666655555444443
Q ss_pred ccCC----------CCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHH
Q psy40 76 EIGK----------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIR 144 (168)
Q Consensus 76 ~~~~----------~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai 144 (168)
.... +.+...+++|||||++. +||++|++.|+.||.|.+||+.++ +||+||.|++.|.|..||
T Consensus 144 ~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAI 217 (321)
T ss_pred cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHH
Confidence 2211 24556789999999999 999999999999999999999877 579999999999999999
Q ss_pred h-hCCceeCCcee-Eeeeccccc
Q psy40 145 G-FAFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 145 ~-~~~~~i~G~~i-v~~a~~~~~ 165 (168)
. +|+.+|.|+.+ |.|.+...+
T Consensus 218 v~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 218 VQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHhcCceeCceEEEEeccccCCC
Confidence 7 99999999999 999886554
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=4.6e-25 Score=175.26 Aligned_cols=152 Identities=21% Similarity=0.206 Sum_probs=116.6
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMD 73 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 73 (168)
..||||+|||+.+++..|+++|..+|.+. .++|.|.+...+.+|+.. ++.......+.......
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l-~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALAL-TGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCEECCeeeEEeecch
Confidence 46999999999999999999999999764 456666666677777743 22222111111111000
Q ss_pred Cc------ccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-
Q psy40 74 KL------EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG- 145 (168)
Q Consensus 74 ~~------~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~- 145 (168)
.. ....+......++|||+|||. +++++|+++|++||.|..|.++.+..+|+++|||||+|.+.++|.+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~ 247 (457)
T TIGR01622 168 EKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEV 247 (457)
T ss_pred hhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 00 001111122368999999999 9999999999999999999999999989999999999999999999998
Q ss_pred hCCceeCCcee-Eeeec
Q psy40 146 FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 146 ~~~~~i~G~~i-v~~a~ 161 (168)
+++..|.|++| |.++.
T Consensus 248 l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 248 MNGFELAGRPIKVGYAQ 264 (457)
T ss_pred cCCcEECCEEEEEEEcc
Confidence 99999999999 99975
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=5.1e-25 Score=169.65 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=118.6
Q ss_pred EEEEECCceeeeecccchhHhhhhccccee---------------EEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVL---------------EVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~---------------~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
.+|||||||+.+++.+|+++|+.||++..+ +|.|.++..+.+|+..+++.......+....+.+.
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 589999999999999999999999987554 55555555788888776665443333322222221
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
.. .....+|||+|||. +++++|+++|++||.|..++++.++.++.++|||||+|++.++|.+||+ +++..+.
T Consensus 84 ~~------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 84 SD------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cc------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 11 22346899999999 9999999999999999999999998889999999999999999999998 9998887
Q ss_pred C--cee-Eeeecccc
Q psy40 153 D--YDV-VDKIVCKY 164 (168)
Q Consensus 153 G--~~i-v~~a~~~~ 164 (168)
| ++| |+++.++.
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 567 88886543
No 8
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.3e-24 Score=174.75 Aligned_cols=153 Identities=17% Similarity=0.215 Sum_probs=119.0
Q ss_pred eEEEEECCceeeeecccchhHhhhhc---------------------ccceeEEEecCCccchHHHHHhhhhhhccCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAV---------------------EAGVLEVVTTRPTINNKAMEEAQSEEEVDMEIP 67 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g---------------------~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~ 67 (168)
.+||||||||+.+++..|.++|..++ ..+.|||.|..+..+..|+. +++.......+.
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~~l~ 253 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYSNVFLK 253 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEeeCceeE
Confidence 35999999999999999999999761 13579999999999999984 444332221111
Q ss_pred CCCC--C---CC----ccc--------------CCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCC
Q psy40 68 GPPH--M---DK----LEI--------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET 123 (168)
Q Consensus 68 ~~~~--~---~~----~~~--------------~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~t 123 (168)
.... . +. ... .........++|||+|||+ +++++|+++|++||.|..+.++.+..+
T Consensus 254 v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 333 (509)
T TIGR01642 254 IRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIAT 333 (509)
T ss_pred ecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC
Confidence 1100 0 00 000 0001223457999999999 999999999999999999999999989
Q ss_pred CCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecc
Q psy40 124 GAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 124 g~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~ 162 (168)
|.++|||||+|.+.++|..||+ +++..|.|+.| |.++..
T Consensus 334 g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 334 GLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 9999999999999999999998 99999999999 999854
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=3.3e-24 Score=174.23 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=121.6
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhhhhhhc----cCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQSEEEV----DMEIPGPPH 71 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 71 (168)
.+|||+|||++++++.|++.|+.||.+. .++|.|.++..+.+|+...++.... ...+....+
T Consensus 179 ~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 179 TNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred CeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecc
Confidence 4799999999999999999999999754 4566677777888888776655433 222211111
Q ss_pred CCCccc------------CCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHH
Q psy40 72 MDKLEI------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138 (168)
Q Consensus 72 ~~~~~~------------~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~ 138 (168)
..+... ..........+|||+||++ +++++|+++|++||.|.+++++.| .+|.++|||||.|.+.+
T Consensus 259 ~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~ 337 (562)
T TIGR01628 259 QKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPE 337 (562)
T ss_pred cChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHH
Confidence 111110 0111234567899999999 999999999999999999999999 47999999999999999
Q ss_pred HHHHHHh-hCCceeCCcee-Eeeeccccc
Q psy40 139 VVDKIRG-FAFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 139 ~a~~ai~-~~~~~i~G~~i-v~~a~~~~~ 165 (168)
+|.+|+. +++..+.|++| |.+|.++.+
T Consensus 338 ~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 338 EANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred HHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 9999998 99999999999 999987754
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=6.7e-24 Score=172.45 Aligned_cols=152 Identities=19% Similarity=0.182 Sum_probs=120.1
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
++|||||||.+++|..|.++|+.+|.+. .|+|.|.++..+.+|+...+........+....+.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~-- 78 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ-- 78 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc--
Confidence 4899999999999999999999999764 45666777778888887766554333322222111
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
.+.. .......+|||+|||. +++++|+++|+.||.|.+|+++++. +|+++|||||+|++.++|.+|++ +++..+.
T Consensus 79 ~~~~--~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 79 RDPS--LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred cccc--ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 1111 1112346899999999 9999999999999999999999986 68899999999999999999998 9999999
Q ss_pred Ccee-EeeecccccC
Q psy40 153 DYDV-VDKIVCKYNI 166 (168)
Q Consensus 153 G~~i-v~~a~~~~~~ 166 (168)
|+.| |....++.++
T Consensus 156 ~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 156 DKEVYVGRFIKKHER 170 (562)
T ss_pred CceEEEecccccccc
Confidence 9999 9877665543
No 11
>KOG0148|consensus
Probab=99.91 E-value=4.7e-24 Score=152.46 Aligned_cols=135 Identities=17% Similarity=0.240 Sum_probs=111.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcccCCCCCCCCCcE
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKK 88 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (168)
.+|||||||+.+++|+.|..+|.+.|.+..|.|+++.-..... ..+ .....+ .....--
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa--------------~~p------~nQsk~-t~~~hfh 64 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWA--------------TAP------GNQSKP-TSNQHFH 64 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccc--------------cCc------ccCCCC-cccccee
Confidence 5799999999999999999999999999999999982111110 000 000000 0111246
Q ss_pred EEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecccc
Q psy40 89 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCKY 164 (168)
Q Consensus 89 l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~~ 164 (168)
+||+.|.. ++-++|++.|.+||+|.++++++|..|++++|||||.|-+.++|+.||. |++..|.+|.| -.||..|+
T Consensus 65 vfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred EEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 99999999 9999999999999999999999999999999999999999999999998 99999999999 99997665
No 12
>KOG0127|consensus
Probab=99.91 E-value=2.3e-23 Score=161.12 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=121.2
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhhh--ccCCC--CCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEEE--VDMEI--PGPP 70 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~~--~~~~~--~~~~ 70 (168)
.||||++||+.++...|.+.|+..|++..|+|+.+... ++++|+........ ...++ ..++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999876665 55666666544221 11111 1112
Q ss_pred CCCCcc-------------cCC---CCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEE
Q psy40 71 HMDKLE-------------IGK---PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 133 (168)
Q Consensus 71 ~~~~~~-------------~~~---~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~ 133 (168)
..+... +.. .....+..+|.|+|||| +...+|+.+|++||.|..|.||+... |+.+|||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEE
Confidence 222100 000 01133468999999999 99999999999999999999998775 6777999999
Q ss_pred EcCHHHHHHHHh-hCCceeCCcee-Eeeeccccc
Q psy40 134 FNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 134 f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~~~ 165 (168)
|....+|..||+ +++++|+||+| |.||.+++-
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999 99999999999 999998864
No 13
>KOG0117|consensus
Probab=99.90 E-value=1.9e-23 Score=158.21 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=115.9
Q ss_pred cccccceeE----EEEECCceeeeecccchhHhhhhccc-----------------ceeEEEecCCccchHHHHHhhhh-
Q psy40 2 TKLSGIVVS----TVYSGSGGWWFESKCPSHEVRLAVEA-----------------GVLEVVTTRPTINNKAMEEAQSE- 59 (168)
Q Consensus 2 ~~~~~~~~~----tlfvg~l~~~~~~~~l~~~f~~~g~~-----------------~~~~v~~~~~~~~~~a~~~~~~~- 59 (168)
+|+.|++++ .|||||+|.+++++++.+++++-++- +.|||.+.++..+..+-+++-..
T Consensus 153 GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 153 GKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred CCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 466676664 99999999999999999999998763 34666666665555444432211
Q ss_pred hhccCCCCCCCCCCCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHH
Q psy40 60 EEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138 (168)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~ 138 (168)
....................+......+.|||+||+. +|++.|+++|++||.|++|..++| ||||+|.+++
T Consensus 233 ~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~ 304 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAERE 304 (506)
T ss_pred eeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchH
Confidence 1111111111111111222333555678999999999 999999999999999999988765 9999999999
Q ss_pred HHHHHHh-hCCceeCCcee-EeeecccccC
Q psy40 139 VVDKIRG-FAFIEFNDYDV-VDKIVCKYNI 166 (168)
Q Consensus 139 ~a~~ai~-~~~~~i~G~~i-v~~a~~~~~~ 166 (168)
+|.+|++ +++.+|+|..| |-.|+|.++-
T Consensus 305 davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 305 DAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 9999998 99999999999 9999997653
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=7.3e-23 Score=164.03 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=111.3
Q ss_pred EEEEECCceeeeecccchhHhhhhcc-----------------cceeEEEecCCccchHHHHHhhhhh-hc-cCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVE-----------------AGVLEVVTTRPTINNKAMEEAQSEE-EV-DMEIPGPP 70 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~-----------------~~~~~v~~~~~~~~~~a~~~~~~~~-~~-~~~~~~~~ 70 (168)
++|||+|||+++++++|.++|+.+++ .+.++|.|.++.++..|++...... .. ...+....
T Consensus 139 ~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vdw 218 (578)
T TIGR01648 139 CRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDW 218 (578)
T ss_pred ceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEe
Confidence 58999999999999999999999863 2457788888777777776543211 11 11111111
Q ss_pred CCCCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcC--CcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-h
Q psy40 71 HMDKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQF--GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-F 146 (168)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~--G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~ 146 (168)
+.+.. ...+......++|||+|||+ +++++|+++|++| |.|++|.++ ++||||+|++.++|.+|++ +
T Consensus 219 A~p~~-~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~l 289 (578)
T TIGR01648 219 AEPEE-EVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDEL 289 (578)
T ss_pred ecccc-cccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHh
Confidence 11111 11122234457999999999 9999999999999 999999875 3599999999999999998 9
Q ss_pred CCceeCCcee-Eeeeccccc
Q psy40 147 AFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 147 ~~~~i~G~~i-v~~a~~~~~ 165 (168)
++..|+|+.| |.+|+|+..
T Consensus 290 nG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 290 NGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCCEECCEEEEEEEccCCCc
Confidence 9999999999 999988643
No 15
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.88 E-value=8e-22 Score=133.44 Aligned_cols=82 Identities=28% Similarity=0.536 Sum_probs=77.3
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
..+++|||+|||+ +++++|+++|++||.|.++.++.|+.|++++|||||+|++.++|++||+ +++..|+|++| |+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4567999999999 9999999999999999999999999999999999999999999999998 99999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87653
No 16
>KOG4205|consensus
Probab=99.88 E-value=1.6e-22 Score=150.88 Aligned_cols=158 Identities=24% Similarity=0.360 Sum_probs=133.7
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhh-hccCCCCCCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEE-EVDMEIPGPPH 71 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~-~~~~~~~~~~~ 71 (168)
.-++||||+|+|..+++.|++.|.++|++..|.++.+..+ .+.+++ .+..+ .....+.++++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl--~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL--NARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee--cccccccCCccccceec
Confidence 3468999999999999999999999999988877664443 444444 22233 23335577778
Q ss_pred CCCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCce
Q psy40 72 MDKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIE 150 (168)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~ 150 (168)
.++.............++||++||. +++++++++|++||.|..+.++.|+.+.+++||+||.|.+.+++++++....+.
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~ 162 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHD 162 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceee
Confidence 8888777777666788999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcee-EeeecccccCC
Q psy40 151 FNDYDV-VDKIVCKYNIE 167 (168)
Q Consensus 151 i~G~~i-v~~a~~~~~~~ 167 (168)
|+|+.+ |+.|.||+.+.
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999 99999998653
No 17
>KOG0131|consensus
Probab=99.87 E-value=2.3e-22 Score=136.24 Aligned_cols=150 Identities=19% Similarity=0.172 Sum_probs=126.3
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
.|||||||+..+++..|+++|-++|++ +.+|+.+....+++.|++-++........+....+...
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 599999999999999999999999954 45788888888999999988866666665655544422
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeE-EEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES-VNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF 151 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~-v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i 151 (168)
... ..-+.+|||+||.+ +++..|-+.|+.||.+.+ -.+++|..||.++|||||.|++.+.+.+|++ |++..+
T Consensus 90 ~~n-----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 90 QKN-----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred ccc-----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 221 22336899999999 999999999999998765 4789999999999999999999999999998 999999
Q ss_pred CCcee-Eeeecccc
Q psy40 152 NDYDV-VDKIVCKY 164 (168)
Q Consensus 152 ~G~~i-v~~a~~~~ 164 (168)
..+++ |.++..++
T Consensus 165 ~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 165 CNRPITVSYAFKKD 178 (203)
T ss_pred cCCceEEEEEEecC
Confidence 99999 99997654
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.87 E-value=8.8e-22 Score=157.21 Aligned_cols=150 Identities=9% Similarity=-0.047 Sum_probs=110.7
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhhh--hhccCCCCCCCCCCCc---
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQSE--EEVDMEIPGPPHMDKL--- 75 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~--- 75 (168)
++|||||||+.+++.+|++.|+.||.+. .|+|.|.++.++.+|+..++.. ......+....+..+.
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~ 82 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKR 82 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccccc
Confidence 4899999999999999999999999875 5667777777888888764321 1111111111111110
Q ss_pred -ccC--CCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCce
Q psy40 76 -EIG--KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIE 150 (168)
Q Consensus 76 -~~~--~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~ 150 (168)
... .........+|||+||++ +|+++|+++|+.||.|.+|.+.+++. +|+|||+|.+.++|.+|++ |++..
T Consensus 83 ~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 83 DGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred CCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCc
Confidence 000 011112335799999999 99999999999999999999987643 4699999999999999998 99999
Q ss_pred eCC--cee-Eeeeccc
Q psy40 151 FND--YDV-VDKIVCK 163 (168)
Q Consensus 151 i~G--~~i-v~~a~~~ 163 (168)
|.| +.| |.|++++
T Consensus 159 i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPT 174 (481)
T ss_pred ccCCceEEEEEEecCC
Confidence 965 467 9998763
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.87 E-value=1.3e-21 Score=156.24 Aligned_cols=152 Identities=10% Similarity=0.119 Sum_probs=113.5
Q ss_pred EEEEECCcee-eeecccchhHhhhhcccce----------eEEEecCCccchHHHHHhhhhhhccCCCCCCCCCC-----
Q psy40 10 STVYSGSGGW-WFESKCPSHEVRLAVEAGV----------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMD----- 73 (168)
Q Consensus 10 ~tlfvg~l~~-~~~~~~l~~~f~~~g~~~~----------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 73 (168)
.+|||+||++ .++++.|+++|+.||.+.. ++|.|.++..+..|+..+++.......+....+..
T Consensus 276 ~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~ 355 (481)
T TIGR01649 276 SVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQP 355 (481)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccC
Confidence 4999999998 6999999999999998754 45556666688888887776653222211110000
Q ss_pred -Cc-----------cc--------CCC------CCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCc--EeEEEEeccCCCC
Q psy40 74 -KL-----------EI--------GKP------EANATVKKMFVGGLKD-QEEDDLREYFSQFGT--IESVNMVTNKETG 124 (168)
Q Consensus 74 -~~-----------~~--------~~~------~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~--v~~v~i~~d~~tg 124 (168)
+. +. ..+ ....++.+|||+|||+ +++++|+++|+.||. +..+++..++ ++
T Consensus 356 ~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~ 434 (481)
T TIGR01649 356 PREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE 434 (481)
T ss_pred CCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC
Confidence 00 00 000 0123567999999999 999999999999998 8888886654 23
Q ss_pred CceeEEEEEEcCHHHHHHHHh-hCCceeCCce------e-Eeeeccc
Q psy40 125 AKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYD------V-VDKIVCK 163 (168)
Q Consensus 125 ~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~------i-v~~a~~~ 163 (168)
++|+|||+|++.++|.+||. +++..|.|+. | |.+|+++
T Consensus 435 -~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 435 -RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred -cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 57899999999999999998 9999999986 7 9998876
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=4e-21 Score=154.11 Aligned_cols=146 Identities=17% Similarity=0.129 Sum_probs=110.0
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce--------------eEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV--------------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~--------------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
.++|||||||++++|+.|.+.|+++|.+.. ++|.|.++..+++|+..+++......+.... .
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V---~- 133 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV---C- 133 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc---c-
Confidence 479999999999999999999999997655 4555556667888887766554332211100 0
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCc-EeEEE-EeccCCCCCceeEEEEEEcCHHHHHHHHh-hCC--
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVN-MVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAF-- 148 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~-v~~v~-i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~-- 148 (168)
.....++|||+|||+ +++++|.+.|++++. +.++. +..+..+++++|||||+|.+.++|.+|+. ++.
T Consensus 134 -------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 134 -------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred -------ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 012357999999999 999999999999964 44443 33334456789999999999999999997 543
Q ss_pred ceeCCcee-Eeeeccccc
Q psy40 149 IEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 149 ~~i~G~~i-v~~a~~~~~ 165 (168)
..+.|+.| |+|+.|+.+
T Consensus 207 i~l~Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEE 224 (578)
T ss_pred eEecCceEEEEeeccccc
Confidence 46889999 999988654
No 21
>KOG0124|consensus
Probab=99.85 E-value=3.6e-21 Score=143.12 Aligned_cols=156 Identities=18% Similarity=0.286 Sum_probs=128.8
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCC--CCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI--PGPP 70 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 70 (168)
+||.||||++++++.|+.|+..|..||.+ +.+||.++-|..+.-+++.+++......++ ..+.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 78999999999999999999999999975 457777777778888898888776544333 3333
Q ss_pred CCCCcccCC---CCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-
Q psy40 71 HMDKLEIGK---PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG- 145 (168)
Q Consensus 71 ~~~~~~~~~---~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~- 145 (168)
.+++.++.- .+......+|||..+++ .+++||+..|+.||+|..|.+.++..++.++||||++|.+..+...||.
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 444332211 12334678999999999 9999999999999999999999999888899999999999999999998
Q ss_pred hCCceeCCcee-Eeeeccc
Q psy40 146 FAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 146 ~~~~~i~G~~i-v~~a~~~ 163 (168)
||-..+.|..+ |..+...
T Consensus 272 MNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred cchhhcccceEecccccCC
Confidence 99999999999 9887543
No 22
>KOG0149|consensus
Probab=99.83 E-value=1e-20 Score=133.05 Aligned_cols=77 Identities=30% Similarity=0.533 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
...++||||+|+| +..+.|+++|++||+|.+..++.|+.||++||||||+|.+.++|++|++-.+..|+||+. |+.|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 3457899999999 999999999999999999999999999999999999999999999999977788999999 8865
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.83 E-value=4.9e-20 Score=148.28 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=113.4
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
.+|||||||+.+++..|+++|+.||.+ +.|+|.|.++..+..|+..+++.......+....+...
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 589999999999999999999999864 45777787777888888877665543322211111000
Q ss_pred cc-------c---------------CCCCCCCCCcEEEEeCCCC-C----------CHHHHHHHHhcCCcEeEEEEeccC
Q psy40 75 LE-------I---------------GKPEANATVKKMFVGGLKD-Q----------EEDDLREYFSQFGTIESVNMVTNK 121 (168)
Q Consensus 75 ~~-------~---------------~~~~~~~~~~~l~V~nlp~-~----------t~~~L~~~F~~~G~v~~v~i~~d~ 121 (168)
.. . .......++++|+|.|+.. - ..++|+++|++||.|..|.|+++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~ 455 (509)
T TIGR01642 376 ANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPN 455 (509)
T ss_pred CCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccC
Confidence 00 0 0001123567899999964 2 135799999999999999999753
Q ss_pred ---CCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecc
Q psy40 122 ---ETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 122 ---~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~ 162 (168)
.++..+|++||+|++.++|.+|+. |++..|+|+.| |.|...
T Consensus 456 ~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 456 GDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 345567999999999999999998 99999999999 998754
No 24
>KOG0109|consensus
Probab=99.82 E-value=1.3e-20 Score=136.13 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=113.8
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeEEE-------ecCCccchHHHHHhhhhhhccCCCCCCCCCCCcccCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVV-------TTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPE 81 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
+.+|||||||.+.++.+|+.+|+++|.+..|.|+ .++.+.+..+++..+.-......+....+..+
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK------- 74 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK------- 74 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEecccc-------
Confidence 4689999999999999999999999999887766 45556677777655544444444433333332
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.+|+|+|+.+ ++.++|+..|++||.|..+.|++| |+||+|.-.++|..|+. +++.+++|+++ |.
T Consensus 75 -sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 75 -SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred -CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 23457899999999 999999999999999999999864 99999999999999998 99999999999 98
Q ss_pred eeccc
Q psy40 159 KIVCK 163 (168)
Q Consensus 159 ~a~~~ 163 (168)
.+..|
T Consensus 146 ~stsr 150 (346)
T KOG0109|consen 146 LSTSR 150 (346)
T ss_pred eeccc
Confidence 88665
No 25
>KOG0145|consensus
Probab=99.80 E-value=8.2e-20 Score=130.44 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=120.8
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
..|.|.-||.++++++++.+|...|++.+|.++.++-+ ++.+|+...++.-....++....+.+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 47899999999999999999999999988876655543 677777666655555555544444443
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
.+. -....|||.+||. +|..+|+++|++||.|..-+|..|.-||.+||.|||.|..+.+|+.||. ++++.--
T Consensus 122 s~~------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 122 SDS------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred hhh------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 332 2346899999999 9999999999999999999999999999999999999999999999998 9988765
Q ss_pred C--cee-Eeeeccc
Q psy40 153 D--YDV-VDKIVCK 163 (168)
Q Consensus 153 G--~~i-v~~a~~~ 163 (168)
| -+| |++|...
T Consensus 196 g~tepItVKFannP 209 (360)
T KOG0145|consen 196 GCTEPITVKFANNP 209 (360)
T ss_pred CCCCCeEEEecCCc
Confidence 5 678 9998543
No 26
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=1.1e-18 Score=133.41 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=76.6
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
....++|||+|||+ +|+++|+++|+.||.|.+|+|++|..+++++|||||+|.+.++|++||+ +++..+.+++| |.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34568999999999 9999999999999999999999999999999999999999999999997 99999999999 999
Q ss_pred eccc
Q psy40 160 IVCK 163 (168)
Q Consensus 160 a~~~ 163 (168)
++|.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 9774
No 27
>KOG0145|consensus
Probab=99.78 E-value=4.2e-18 Score=121.74 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=119.4
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccC----------
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDM---------- 64 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~---------- 64 (168)
+.|||.+||..++..+|.+.|+.||.+ +..||.|++-..+..|+...++.....-
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 589999999999999999999999975 4578888888888888877654431100
Q ss_pred --------------------CCCCCCCCC-----------------Ccc------------cCCCCCCCCCcEEEEeCCC
Q psy40 65 --------------------EIPGPPHMD-----------------KLE------------IGKPEANATVKKMFVGGLK 95 (168)
Q Consensus 65 --------------------~~~~~~~~~-----------------~~~------------~~~~~~~~~~~~l~V~nlp 95 (168)
+...+.... +.. ..-++.......|||-||.
T Consensus 208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence 000000000 000 0001122345689999999
Q ss_pred C-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeeccc
Q psy40 96 D-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 96 ~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~ 163 (168)
+ ++|.-|.++|.+||.|..|++++|-.|.+.+|||||.+.+.++|..||. +++..+.+|-+ |.+-..+
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9 9999999999999999999999999999999999999999999999998 99999999999 9886544
No 28
>KOG0123|consensus
Probab=99.78 E-value=9.8e-19 Score=134.50 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=116.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeE------------EEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLE------------VVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLE 76 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~------------v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
+..|||| ++++|..|.+.|+.+|.+.+++ |-|..|..+.+|+..++-.......+....+....
T Consensus 1 ~~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 1 MASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred CCceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 3579999 9999999999999999876554 45566668888888877666555544333322221
Q ss_pred cCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCc
Q psy40 77 IGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDY 154 (168)
Q Consensus 77 ~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~ 154 (168)
..+||.||++ ++..+|.++|+.||+|.+|++.+|.. | ++|| ||+|++.++|.+||+ +++..+.|+
T Consensus 77 ----------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 77 ----------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred ----------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 1299999999 99999999999999999999999984 5 9999 999999999999998 999999999
Q ss_pred ee-EeeecccccC
Q psy40 155 DV-VDKIVCKYNI 166 (168)
Q Consensus 155 ~i-v~~a~~~~~~ 166 (168)
+| |....++.++
T Consensus 144 ki~vg~~~~~~er 156 (369)
T KOG0123|consen 144 KIYVGLFERKEER 156 (369)
T ss_pred eeEEeeccchhhh
Confidence 99 9999887764
No 29
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.78 E-value=2.3e-18 Score=102.64 Aligned_cols=67 Identities=34% Similarity=0.694 Sum_probs=63.7
Q ss_pred EEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 89 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 89 l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
|||+|||+ +++++|+++|++||.|..+.+..+ .++.++|+|||+|.+.++|++|++ +++..+.|+.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 79999999 999999999999999999999987 578999999999999999999999 99999999875
No 30
>KOG0117|consensus
Probab=99.77 E-value=3e-18 Score=130.25 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=112.0
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccceeEEEec---------------CCccchHHHHHhhhhhhccCCCCCCCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTT---------------RPTINNKAMEEAQSEEEVDMEIPGPPHM 72 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 72 (168)
..+-||||.||.++-|++|+-+|++.|.+...+++.+ .-..++.|++..++......+....
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv--- 158 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV--- 158 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE---
Confidence 4578999999999999999999999998765555444 4446666666655554332222111
Q ss_pred CCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCc-EeEEEEeccCC-CCCceeEEEEEEcCHHHHHHHHh-hCC
Q psy40 73 DKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMVTNKE-TGAKRGFAFIEFNDYDVVDKIRG-FAF 148 (168)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~-v~~v~i~~d~~-tg~~~g~afV~f~~~~~a~~ai~-~~~ 148 (168)
. ....+++|||||+|. +++++|.+.|++-++ |.+|.+..+.. ..+.||||||+|+++..|..|-. |..
T Consensus 159 --c------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 159 --C------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred --E------EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 0 122458999999999 999999999999985 77887766543 34679999999999999999986 443
Q ss_pred --ceeCCcee-EeeecccccC
Q psy40 149 --IEFNDYDV-VDKIVCKYNI 166 (168)
Q Consensus 149 --~~i~G~~i-v~~a~~~~~~ 166 (168)
..+.|+.+ |.||.|+.+.
T Consensus 231 g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred CceeecCCcceeeccCcccCC
Confidence 46789999 9999998764
No 31
>KOG0122|consensus
Probab=99.76 E-value=2.7e-18 Score=121.48 Aligned_cols=80 Identities=29% Similarity=0.442 Sum_probs=76.3
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
...+|-|.||+. +++++|+++|..||.|.++.+.+|+.||.+||||||+|.++++|.+||+ ++++-++.-.| |.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 567899999999 9999999999999999999999999999999999999999999999998 99998888888 99999
Q ss_pred ccc
Q psy40 162 CKY 164 (168)
Q Consensus 162 ~~~ 164 (168)
|+.
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 973
No 32
>KOG0127|consensus
Probab=99.75 E-value=2.8e-17 Score=127.75 Aligned_cols=80 Identities=28% Similarity=0.396 Sum_probs=73.7
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhC------C-ceeCCcee-
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFA------F-IEFNDYDV- 156 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~------~-~~i~G~~i- 156 (168)
..+|||+|||+ +|+++|..+|++||+|..+.++.++.|+.++|.|||.|.+...|..||++. + ..++||-|
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 48999999999 999999999999999999999999999999999999999999999999832 3 67899999
Q ss_pred Eeeeccccc
Q psy40 157 VDKIVCKYN 165 (168)
Q Consensus 157 v~~a~~~~~ 165 (168)
|..|.+|.+
T Consensus 372 v~~Av~Rke 380 (678)
T KOG0127|consen 372 VTLAVTRKE 380 (678)
T ss_pred eeeccchHH
Confidence 999988754
No 33
>KOG0113|consensus
Probab=99.74 E-value=1.4e-17 Score=120.97 Aligned_cols=79 Identities=28% Similarity=0.460 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
.++.+||||+.|++ ++|..|+..|+.||.|..++|++|+.||+++|||||+|++..++.+|-+ .++.+|+|+.| |.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46889999999999 9999999999999999999999999999999999999999999999998 99999999999 876
Q ss_pred ec
Q psy40 160 IV 161 (168)
Q Consensus 160 a~ 161 (168)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 54
No 34
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.73 E-value=2.6e-17 Score=119.30 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=68.6
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
.++|||+|||+ +|+++|+++|+.||.|.+|+|++|+. ++|||||+|++.++|..||.+++..|.|++| |.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 47999999999 99999999999999999999998863 4789999999999999999999999999999 99885
No 35
>KOG0125|consensus
Probab=99.73 E-value=1.3e-17 Score=122.43 Aligned_cols=81 Identities=21% Similarity=0.428 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 81 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 81 ~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
+.....++|+|.|||+ ..+-||+..|.+||.|.+|.|+.+. .-+||||||+|++.++|++|-+ +++..+.||+| |
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 3344568999999999 9999999999999999999999875 3579999999999999999998 99999999999 9
Q ss_pred eeeccc
Q psy40 158 DKIVCK 163 (168)
Q Consensus 158 ~~a~~~ 163 (168)
+.|.+|
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999765
No 36
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.72 E-value=6e-17 Score=96.69 Aligned_cols=67 Identities=33% Similarity=0.683 Sum_probs=61.4
Q ss_pred EEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 89 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 89 l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
|||+|||+ +++++|+++|+.||.|..+.+..++. ++++|+|||+|.+.++|.+|+. .++..++|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999 99999999999999999999999876 8999999999999999999999 77799999875
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.72 E-value=4.1e-17 Score=131.54 Aligned_cols=78 Identities=27% Similarity=0.466 Sum_probs=73.9
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...++|||+|||+ +++++|+++|++||.|.+|++++|+.||+++|||||+|.+.++|.+|++ +++..+.||.| |+++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4558999999999 9999999999999999999999999999999999999999999999998 99999999999 9865
Q ss_pred c
Q psy40 161 V 161 (168)
Q Consensus 161 ~ 161 (168)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 38
>KOG0110|consensus
Probab=99.71 E-value=8e-18 Score=134.03 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=123.2
Q ss_pred EEEECCceeeeecccchhHhhhhccc------------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCC
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEA------------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHM 72 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~------------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 72 (168)
+|||.||++..+...+...|...|.+ +.+||.|.++..++.+++.+++.......+....+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 49999999999999999999998854 456788888889999999988666444443333222
Q ss_pred CCccc---CCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC
Q psy40 73 DKLEI---GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA 147 (168)
Q Consensus 73 ~~~~~---~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~ 147 (168)
.+... .........++|+|+|||+ ++-.+++++|..||.+.+|+|+.....+.++|||||.|-++.+|.+|++ +.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 11111 1111122357899999999 9999999999999999999999886667789999999999999999998 88
Q ss_pred CceeCCcee-Eeeecccc
Q psy40 148 FIEFNDYDV-VDKIVCKY 164 (168)
Q Consensus 148 ~~~i~G~~i-v~~a~~~~ 164 (168)
...+.||++ +.||+...
T Consensus 677 STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDN 694 (725)
T ss_pred ccceechhhheehhccch
Confidence 889999999 99998654
No 39
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.69 E-value=2.7e-16 Score=125.21 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
...++|||+|||. +++++|+++|++||.|..|.++.|+.+|+++|||||+|.+.++|.+||.+++..+.|++| |.++.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 4568999999999 999999999999999999999999999999999999999999999999999999999999 98875
Q ss_pred cc
Q psy40 162 CK 163 (168)
Q Consensus 162 ~~ 163 (168)
..
T Consensus 167 ~~ 168 (457)
T TIGR01622 167 AE 168 (457)
T ss_pred hh
Confidence 43
No 40
>KOG4207|consensus
Probab=99.69 E-value=6.7e-17 Score=111.97 Aligned_cols=76 Identities=24% Similarity=0.406 Sum_probs=72.5
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
-..|-|.||.+ ++.++|+.+|++||.|-+|.|++|+.|++++|||||.|....+|+.|++ |++..++|+.| |..|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 36799999999 9999999999999999999999999999999999999999999999999 99999999999 88764
No 41
>KOG0121|consensus
Probab=99.68 E-value=1.4e-16 Score=102.43 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
...++||||+||.+ ++|+.|-++|+..|+|..|-+--|+.+..+.||+||+|.+.++|+.|+. +++..++.++| +.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34679999999999 9999999999999999999999999888999999999999999999999 99999999999 887
Q ss_pred e
Q psy40 160 I 160 (168)
Q Consensus 160 a 160 (168)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 42
>KOG0123|consensus
Probab=99.67 E-value=1.7e-16 Score=122.16 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=127.1
Q ss_pred EEEECCceeeeecccchhHhhhhccccee------------EEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcccC
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAGVL------------EVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIG 78 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~~~------------~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
.|||.||+..++...|.+.|+.||++.+| ||.|+++..+++++...++.......+-.-....+....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGYFVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceeeEEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 59999999999999999999999998877 555666678889998888888766666444443333322
Q ss_pred CCC--CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCc
Q psy40 79 KPE--ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDY 154 (168)
Q Consensus 79 ~~~--~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~ 154 (168)
.+. .......+||.|++. ++++.|..+|++||.|.++.++++. .|+++||+||+|++.+.|..|++ +++..+.+.
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK 236 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCcc
Confidence 221 334557899999999 9999999999999999999999987 47799999999999999999998 999999999
Q ss_pred ee-Eeeeccccc
Q psy40 155 DV-VDKIVCKYN 165 (168)
Q Consensus 155 ~i-v~~a~~~~~ 165 (168)
.+ |..+..+.+
T Consensus 237 ~~~V~~aqkk~e 248 (369)
T KOG0123|consen 237 ELYVGRAQKKSE 248 (369)
T ss_pred ceeecccccchh
Confidence 99 988876443
No 43
>PLN03213 repressor of silencing 3; Provisional
Probab=99.67 E-value=3.4e-16 Score=120.86 Aligned_cols=76 Identities=29% Similarity=0.532 Sum_probs=69.6
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCH--HHHHHHHh-hCCceeCCcee-Eee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY--DVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~--~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..-+||||||++ +++++|+..|+.||.|.+|.|+++ +| ||||||+|.+. .++.+||+ +++..+.|+.| |..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 446899999999 999999999999999999999954 67 89999999987 78999998 99999999999 999
Q ss_pred ecccc
Q psy40 160 IVCKY 164 (168)
Q Consensus 160 a~~~~ 164 (168)
|+|..
T Consensus 85 AKP~Y 89 (759)
T PLN03213 85 AKEHY 89 (759)
T ss_pred ccHHH
Confidence 98853
No 44
>KOG0126|consensus
Probab=99.67 E-value=5.6e-18 Score=115.08 Aligned_cols=74 Identities=30% Similarity=0.506 Sum_probs=70.7
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
.+.-|||||||+ +||-||.-.|++||+|.+|.+++|+.||+++||||+-|++..+...|++ +++..|.||.| |.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 345799999999 9999999999999999999999999999999999999999999999998 99999999999 76
No 45
>KOG0111|consensus
Probab=99.67 E-value=5.2e-17 Score=113.58 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=77.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...++||||+|.. +++.-|-..|-.||.|.+|.++.|-+++++||||||+|...++|.+||+ |+..++.||.| |++|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3458999999999 9999999999999999999999999999999999999999999999998 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
+|..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 9853
No 46
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.66 E-value=9.5e-16 Score=109.62 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
...+|||+||++ +|+++|+++|+.||+|.+|+|++|. ..+|||||+|+++++++.|+.+++..|.+++| |...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeC
Confidence 347999999999 9999999999999999999999984 44589999999999999999999999999999 7654
No 47
>KOG0147|consensus
Probab=99.64 E-value=2e-16 Score=123.11 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=107.7
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
.|||+-.|+-......|.+.|+.+|.+..+.++.++.+ .+..++.. .+.... ..+.....+.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrll--g~pv~vq~sE 256 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLL--GVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCccc--CceeEecccH
Confidence 48888899989999999999999999877776665554 33333311 111100 0111100000
Q ss_pred -----cccCC-----CCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHH
Q psy40 75 -----LEIGK-----PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143 (168)
Q Consensus 75 -----~~~~~-----~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~a 143 (168)
..... .+...+...||||||++ +++++|+.+|+.||.|+.|.++.|..||+++|||||+|.+.++|.+|
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 00000 01112334499999999 99999999999999999999999999999999999999999999999
Q ss_pred Hh-hCCceeCCcee-Eeee
Q psy40 144 RG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 144 i~-~~~~~i~G~~i-v~~a 160 (168)
++ +++.+|-|+.| |..-
T Consensus 337 ~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 337 LEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred HHHhccceecCceEEEEEe
Confidence 98 99999999999 7644
No 48
>smart00362 RRM_2 RNA recognition motif.
Probab=99.63 E-value=3.2e-15 Score=88.68 Aligned_cols=69 Identities=36% Similarity=0.654 Sum_probs=63.8
Q ss_pred EEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
+|||+|||. +++++|+++|.+||.+..+.+..+. +.++|+|||+|.+.++|.+|++ +++..+.|+++ |+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999 9999999999999999999998876 6788999999999999999998 88899999988 63
No 49
>KOG0114|consensus
Probab=99.63 E-value=3.9e-15 Score=92.45 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
-++.|||+|||+ +|.++.-++|.+||.|..|+|-..++| +|-|||.|++..+|.+|++ +.+..++++.+ |-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 347899999999 999999999999999999999876654 8999999999999999999 99999999999 88776
Q ss_pred cc
Q psy40 162 CK 163 (168)
Q Consensus 162 ~~ 163 (168)
|.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 53
No 50
>smart00360 RRM RNA recognition motif.
Probab=99.61 E-value=5.1e-15 Score=87.46 Aligned_cols=68 Identities=41% Similarity=0.683 Sum_probs=63.3
Q ss_pred EeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 91 VGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 91 V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
|+|||. +++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|++ +++..+.|+++ |+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999 9999999999999999999999988788999999999999999999998 88899999988 63
No 51
>KOG0131|consensus
Probab=99.61 E-value=1.5e-15 Score=103.33 Aligned_cols=77 Identities=22% Similarity=0.409 Sum_probs=73.8
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
...||||+||+. ++++.|.++|-+-|.|.++.+++|+.++.++||||++|.+.++|+-|+. ++..++.||+| |+.+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 457999999999 9999999999999999999999999999999999999999999999999 99999999999 98886
No 52
>KOG0107|consensus
Probab=99.60 E-value=3.6e-15 Score=100.90 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=66.1
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecc
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~ 162 (168)
.++|||+||+. +++.+|+..|..||.+..|-|.+. +.|||||+|++..+|+.|+. +++..|+|..| |+.+.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 57999999999 999999999999999999988664 36899999999999999998 99999999999 887754
Q ss_pred c
Q psy40 163 K 163 (168)
Q Consensus 163 ~ 163 (168)
+
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 3
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=8.2e-15 Score=108.27 Aligned_cols=76 Identities=37% Similarity=0.632 Sum_probs=72.8
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
..+|||+|||+ +++++|+++|.+||.+..+.++.|+.+|.++|||||.|.+.++|..|++ +++..+.|++| |.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 58999999999 9999999999999999999999998899999999999999999999998 88899999999 99854
No 54
>KOG0144|consensus
Probab=99.59 E-value=4.8e-15 Score=112.58 Aligned_cols=83 Identities=24% Similarity=0.449 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCce-eCC--cee-E
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIE-FND--YDV-V 157 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~-i~G--~~i-v 157 (168)
...-++|||-+|. |+|.||+.+|++||.|.+|.|++|+.|+.++|||||.|.++++|.+|+. +++.+ |-| .++ |
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 3446899999999 9999999999999999999999999999999999999999999999998 77654 444 667 9
Q ss_pred eeecccccC
Q psy40 158 DKIVCKYNI 166 (168)
Q Consensus 158 ~~a~~~~~~ 166 (168)
++|....++
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 999765543
No 55
>KOG0110|consensus
Probab=99.58 E-value=2.7e-14 Score=114.14 Aligned_cols=151 Identities=16% Similarity=0.113 Sum_probs=112.4
Q ss_pred EEEECCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhhhhhccCCCCCC------------
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGP------------ 69 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------ 69 (168)
-++|+|||.......+...|..||+++ .+.|.|.+|..+++|...++........+-..
T Consensus 387 vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pk 466 (725)
T KOG0110|consen 387 VILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPK 466 (725)
T ss_pred eeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCcc
Confidence 689999999999999999999999776 46788999998888888765544222111000
Q ss_pred -------CCCC-----------Cccc----CC--C-------CCCCCC-cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEE
Q psy40 70 -------PHMD-----------KLEI----GK--P-------EANATV-KKMFVGGLKD-QEEDDLREYFSQFGTIESVN 116 (168)
Q Consensus 70 -------~~~~-----------~~~~----~~--~-------~~~~~~-~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~ 116 (168)
.... ...+ .. . ...... ++|||.||++ ++.++|...|...|.|.++.
T Consensus 467 a~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~ 546 (725)
T KOG0110|consen 467 ADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIE 546 (725)
T ss_pred ccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEE
Confidence 0000 0000 00 0 001122 3399999999 99999999999999999998
Q ss_pred EeccCCCC---CceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 117 MVTNKETG---AKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 117 i~~d~~tg---~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
|..-+... .+.|||||+|.+.++|..|+. |+++.|+|+.| |+++.
T Consensus 547 I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 547 ISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred EeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 87655321 245999999999999999998 99999999999 99987
No 56
>KOG0129|consensus
Probab=99.57 E-value=1.6e-14 Score=111.96 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=112.3
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc-----------------c---eeEEEecCCccchHHHHHhhh-hhhccCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA-----------------G---VLEVVTTRPTINNKAMEEAQS-EEEVDMEI 66 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~-----------------~---~~~v~~~~~~~~~~a~~~~~~-~~~~~~~~ 66 (168)
.-++||||+|||+++|..|...|..||.+ + .++++|+++..++.-+.+... .......+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 34699999999999999999999999853 4 789999999888876655322 22222222
Q ss_pred CCCCCCCCccc-------------CCCCCCCCCcEEEEeCCCC-CCHHHHHHHHh-cCCcEeEEEEeccCCCCCceeEEE
Q psy40 67 PGPPHMDKLEI-------------GKPEANATVKKMFVGGLKD-QEEDDLREYFS-QFGTIESVNMVTNKETGAKRGFAF 131 (168)
Q Consensus 67 ~~~~~~~~~~~-------------~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~-~~G~v~~v~i~~d~~tg~~~g~af 131 (168)
..+....+..+ ......++.+|||||+||. ++.++|..+|+ -||.|..+.|-+|.+-+.++|-|-
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 22222222111 1234556789999999999 99999999999 699999999999987889999999
Q ss_pred EEEcCHHHHHHHHhhCCceeC
Q psy40 132 IEFNDYDVVDKIRGFAFIEFN 152 (168)
Q Consensus 132 V~f~~~~~a~~ai~~~~~~i~ 152 (168)
|+|++..+..+||++....|+
T Consensus 418 VtFsnqqsYi~AIsarFvql~ 438 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISARFVQLD 438 (520)
T ss_pred eeecccHHHHHHHhhheEEEe
Confidence 999999999999987665554
No 57
>KOG0108|consensus
Probab=99.56 E-value=1e-14 Score=113.59 Aligned_cols=78 Identities=29% Similarity=0.497 Sum_probs=75.0
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeeccc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~ 163 (168)
+.+||||+|+ +++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|..|++ +++.++.||+| |.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999 9999999999999999999999999999999999999999999999999 99999999999 9998655
Q ss_pred c
Q psy40 164 Y 164 (168)
Q Consensus 164 ~ 164 (168)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 58
>KOG0130|consensus
Probab=99.55 E-value=1.8e-14 Score=93.68 Aligned_cols=80 Identities=21% Similarity=0.437 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
.-....|||.+++. ++++++.+.|..||+|..+.+--|+.||..+|||.|+|++.++|.+|++ +|+..|.|..+ |.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34567899999999 9999999999999999999999999999999999999999999999998 99999999999 999
Q ss_pred ecc
Q psy40 160 IVC 162 (168)
Q Consensus 160 a~~ 162 (168)
+..
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 854
No 59
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.55 E-value=9.8e-14 Score=82.58 Aligned_cols=71 Identities=41% Similarity=0.679 Sum_probs=64.9
Q ss_pred EEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
+|+|+|||+ +++++|+.+|..||.|..+.+..+..+ .++|+|||+|.+.++|..|++ +++..+.|+++ |.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999 999999999999999999999987653 778999999999999999998 88888999998 764
No 60
>KOG4205|consensus
Probab=99.52 E-value=1e-14 Score=109.21 Aligned_cols=81 Identities=32% Similarity=0.578 Sum_probs=77.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
..++|||++|+| ++++.|+++|.+||+|.++.+++|+.+++++||+||+|++.+...+++....|.|+|+.| ++.|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 458999999999 999999999999999999999999999999999999999999999999888899999999 999999
Q ss_pred ccc
Q psy40 163 KYN 165 (168)
Q Consensus 163 ~~~ 165 (168)
+.+
T Consensus 85 r~~ 87 (311)
T KOG4205|consen 85 RED 87 (311)
T ss_pred ccc
Confidence 875
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=99.52 E-value=8e-14 Score=83.13 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=53.3
Q ss_pred HHHHHHHHh----cCCcEeEEE-EeccCCC--CCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 99 EDDLREYFS----QFGTIESVN-MVTNKET--GAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 99 ~~~L~~~F~----~~G~v~~v~-i~~d~~t--g~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||+|.+.++|.+|+. +++..+.|+.| +
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999995 7777666 8999999999999999999998 99999999998 5
No 62
>KOG4206|consensus
Probab=99.50 E-value=3.7e-13 Score=94.75 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=110.9
Q ss_pred EEEECCceeeeecccchh----Hhhhhccc------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 11 TVYSGSGGWWFESKCPSH----EVRLAVEA------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~----~f~~~g~~------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
||||.||...+.-+.|+. +|++||.+ ++|+|+|...+.+..|+.++++-...+.......+..+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 999999999999988887 99999965 57899999999999999887766533222111111000
Q ss_pred cc------------------------------c-----------CC---CCCCCCCcEEEEeCCCC-CCHHHHHHHHhcC
Q psy40 75 LE------------------------------I-----------GK---PEANATVKKMFVGGLKD-QEEDDLREYFSQF 109 (168)
Q Consensus 75 ~~------------------------------~-----------~~---~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~ 109 (168)
.+ . .. .....+...+|+.|||. ++.+.|..+|++|
T Consensus 91 sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf 170 (221)
T KOG4206|consen 91 SDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQF 170 (221)
T ss_pred cchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhC
Confidence 00 0 00 11245678999999999 9999999999999
Q ss_pred CcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC-Ccee-Eeeec
Q psy40 110 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN-DYDV-VDKIV 161 (168)
Q Consensus 110 G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~-G~~i-v~~a~ 161 (168)
..-..++++... .+.|||+|.+...|..|.. +++..|. ...+ +.+++
T Consensus 171 ~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 171 PGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred cccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999988654 4799999999999999987 8777775 6667 76664
No 63
>KOG0415|consensus
Probab=99.50 E-value=6.8e-14 Score=104.21 Aligned_cols=79 Identities=27% Similarity=0.448 Sum_probs=74.9
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.+.|||.-|.+ +++++|.-+|+.||.|.+|.+++|..||.+-.||||+|++.+++++|-- |++..|+.++| |.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 3557899999999 9999999999999999999999999999999999999999999999996 99999999999 9988
Q ss_pred cc
Q psy40 161 VC 162 (168)
Q Consensus 161 ~~ 162 (168)
++
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 65
No 64
>KOG0105|consensus
Probab=99.47 E-value=1.5e-13 Score=94.05 Aligned_cols=75 Identities=19% Similarity=0.385 Sum_probs=66.2
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
.+++|||+|||. +.+.+|+++|.+||.|..|.+...+ .+-.||||+|++..+|+.||. -++..++|.+| |.++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 458999999999 9999999999999999999885432 334699999999999999998 88999999999 99875
Q ss_pred c
Q psy40 162 C 162 (168)
Q Consensus 162 ~ 162 (168)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 3
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=4.3e-13 Score=76.41 Aligned_cols=54 Identities=31% Similarity=0.557 Sum_probs=48.7
Q ss_pred HHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 102 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 102 L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
|.++|++||+|.++.+.+++ +++|||+|.+.++|..|++ +++..+.|++| |.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 5799999999999999998 99999999999 9986
No 66
>KOG0124|consensus
Probab=99.46 E-value=7.3e-14 Score=104.51 Aligned_cols=74 Identities=27% Similarity=0.480 Sum_probs=71.8
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
+++|||.+.+ +.|+.|+..|..||.|.++.+-+|..|++++|||||+|+-++.|..|++ ||+..+.||.| |.+.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 7899999999 9999999999999999999999999999999999999999999999999 99999999999 8865
No 67
>KOG0146|consensus
Probab=99.45 E-value=1.3e-13 Score=99.24 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=77.7
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...|+|||-.||. ..+.+|...|-.||.|.+.++..|+.|.++++||||.|.+..+|.+||. ||+..|..+++ |..-
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 4679999999999 9999999999999999999999999999999999999999999999998 99999999999 9988
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
+||+
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 8886
No 68
>KOG0153|consensus
Probab=99.45 E-value=4e-13 Score=99.76 Aligned_cols=77 Identities=27% Similarity=0.579 Sum_probs=68.7
Q ss_pred CCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh--hCCceeCCcee-
Q psy40 81 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG--FAFIEFNDYDV- 156 (168)
Q Consensus 81 ~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~--~~~~~i~G~~i- 156 (168)
..+....+|||++|.. +++.+|+++|.+||+|+++++... ++||||+|.++++|+.|.+ .+...|+|++|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 3445678999999999 999999999999999999998754 4599999999999999996 77788999999
Q ss_pred Eeeeccc
Q psy40 157 VDKIVCK 163 (168)
Q Consensus 157 v~~a~~~ 163 (168)
|.|+.|+
T Consensus 297 i~Wg~~~ 303 (377)
T KOG0153|consen 297 IKWGRPK 303 (377)
T ss_pred EEeCCCc
Confidence 9999983
No 69
>KOG4208|consensus
Probab=99.44 E-value=4.9e-13 Score=92.88 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=73.3
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcC-CcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQF-GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~-G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...-+|+..+|. +.+..+..+|.+| |.+...++-|++.||.++|||||+|++.+.|+-|-+ ||+..+.|+-+ |.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 446799999999 9999999999999 678888998999999999999999999999999999 99999999999 9998
Q ss_pred ccc
Q psy40 161 VCK 163 (168)
Q Consensus 161 ~~~ 163 (168)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 775
No 70
>KOG0105|consensus
Probab=99.44 E-value=1.3e-12 Score=89.43 Aligned_cols=138 Identities=12% Similarity=0.039 Sum_probs=101.3
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC-
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK- 74 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~- 74 (168)
.-++|||||||.++-+.++..+|.++|.+ ..|||.|+++..++.|+....+-.....++.......-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 34699999999999999999999999975 35899999999999988665544322222211100000
Q ss_pred ----c---------------ccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEE
Q psy40 75 ----L---------------EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134 (168)
Q Consensus 75 ----~---------------~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f 134 (168)
. ...-+.+......+.|.+||+ -++++|++++..-|.|....+.+| |.+.|+|
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~ 157 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEY 157 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeee
Confidence 0 000011223345799999999 999999999999999999888765 4899999
Q ss_pred cCHHHHHHHHh-hCCceeC
Q psy40 135 NDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 135 ~~~~~a~~ai~-~~~~~i~ 152 (168)
...++++-|+. +....+.
T Consensus 158 ~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eehhhHHHHHHhhcccccc
Confidence 99999999997 6665543
No 71
>KOG4206|consensus
Probab=99.41 E-value=1.3e-12 Score=92.03 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCC-CCHHHHHH----HHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-
Q psy40 84 ATVKKMFVGGLKD-QEEDDLRE----YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV- 156 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~----~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i- 156 (168)
.++.||||.||+. +..++|+. +|++||+|.+|...+ |.+.||-|||.|.+.+.|-.|+. ++|..+.|+++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3456999999999 99999998 999999999998754 67899999999999999999998 99999999999
Q ss_pred Eeeeccccc
Q psy40 157 VDKIVCKYN 165 (168)
Q Consensus 157 v~~a~~~~~ 165 (168)
+.||+.+.+
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999988765
No 72
>KOG4212|consensus
Probab=99.35 E-value=4.8e-12 Score=96.78 Aligned_cols=76 Identities=25% Similarity=0.416 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHh-cCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFS-QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~-~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
...+.+||.|+|+ +.|.+|+++|. +-|+|+.|.+..|. +|++||||.|+|++++.+++|++ ++.+++.||+| |+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999 99999999996 57899999999997 69999999999999999999999 99999999999 774
Q ss_pred e
Q psy40 160 I 160 (168)
Q Consensus 160 a 160 (168)
.
T Consensus 121 d 121 (608)
T KOG4212|consen 121 D 121 (608)
T ss_pred c
Confidence 4
No 73
>KOG0109|consensus
Probab=99.34 E-value=1.5e-12 Score=94.81 Aligned_cols=70 Identities=23% Similarity=0.480 Sum_probs=65.6
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeeccc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~ 163 (168)
-+|||||||. +++.+|+.+|++||.|..|.|+++ ||||+.++...++-||. +++..|.|..| |+-++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3699999999 999999999999999999999854 99999999999999998 99999999999 9999887
Q ss_pred c
Q psy40 164 Y 164 (168)
Q Consensus 164 ~ 164 (168)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 4
No 74
>KOG4211|consensus
Probab=99.32 E-value=2e-11 Score=94.47 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=106.3
Q ss_pred EEEECCceeeeecccchhHhhhhc------------ccceeEEEecCCccchHHHHHhhhhhh-ccC---CCCCCCCCCC
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAV------------EAGVLEVVTTRPTINNKAMEEAQSEEE-VDM---EIPGPPHMDK 74 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g------------~~~~~~v~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~~~~~ 74 (168)
-|=+-+|||+.++++|.+.|+.|. ..+.|+|.+.....+.+|+++...... ... +........-
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~ 91 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWV 91 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccccc
Confidence 455789999999999999999875 346788999888899999887543321 111 1111100000
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeE-EEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeC
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES-VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFN 152 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~-v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~ 152 (168)
.+...+........|-+++||+ +|++||.++|+.--.+.. +.++.++ .+++.|-|||+|++.+.|++|+.-+...|.
T Consensus 92 ~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iG 170 (510)
T KOG4211|consen 92 MRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIG 170 (510)
T ss_pred ccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhc
Confidence 0111111113557899999999 999999999998754444 4566665 588999999999999999999988778888
Q ss_pred Ccee-Eeee
Q psy40 153 DYDV-VDKI 160 (168)
Q Consensus 153 G~~i-v~~a 160 (168)
-|.| |-.|
T Consensus 171 hRYIEvF~S 179 (510)
T KOG4211|consen 171 HRYIEVFRS 179 (510)
T ss_pred cceEEeehh
Confidence 8888 7655
No 75
>KOG0106|consensus
Probab=99.32 E-value=1.4e-12 Score=92.57 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=104.7
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce-------eEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC-------
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV-------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK------- 74 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~-------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------- 74 (168)
|..+|||+||+...+..+.++|..+|.+.. ++|.++++..+..++...++.....+++....+...
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~ 80 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRP 80 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCC
Confidence 457999999999999999999999998654 466677777777777666555543333211111100
Q ss_pred -------cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-
Q psy40 75 -------LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG- 145 (168)
Q Consensus 75 -------~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~- 145 (168)
............+.+.|.+++. +++.+|.++|.++|.+....+ ..+++||.|+..++|..|++
T Consensus 81 ~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 81 RGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred CCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchh
Confidence 0111111233457899999999 999999999999999844333 35699999999999999999
Q ss_pred hCCceeCCcee-Eee
Q psy40 146 FAFIEFNDYDV-VDK 159 (168)
Q Consensus 146 ~~~~~i~G~~i-v~~ 159 (168)
+++.++.|+.| +..
T Consensus 153 l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 153 LDGKKLNGRRISVEK 167 (216)
T ss_pred ccchhhcCceeeecc
Confidence 99999999999 743
No 76
>KOG0132|consensus
Probab=99.26 E-value=1.5e-11 Score=99.66 Aligned_cols=74 Identities=27% Similarity=0.478 Sum_probs=67.9
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
-++|||||+|+. +++.||..+|+.||+|.+|.++.. +|||||.+.++.+|.+|+. |.++.+.++.| +.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 468999999999 999999999999999999988643 6799999999999999998 99999999999 99996
Q ss_pred ccc
Q psy40 162 CKY 164 (168)
Q Consensus 162 ~~~ 164 (168)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 543
No 77
>KOG4661|consensus
Probab=99.26 E-value=1.6e-11 Score=96.87 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
-.++|||.+|.. +...+|+.+|++||.|.-..++++..+.-.++||||++.+.++|.+||+ ++..+|-|+.| |..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 457899999999 9999999999999999999999998887889999999999999999999 99999999999 99886
Q ss_pred c
Q psy40 162 C 162 (168)
Q Consensus 162 ~ 162 (168)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 78
>KOG0146|consensus
Probab=99.20 E-value=3.6e-11 Score=86.84 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCce-eC--Ccee-Ee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIE-FN--DYDV-VD 158 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~-i~--G~~i-v~ 158 (168)
..++||||.|.. -+|+|++.+|..||.+++|.+.+.. .|.++|||||.|.+..+|.+||. +++.. .- ...+ |+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 458999999999 9999999999999999999999987 48999999999999999999998 88743 33 3566 99
Q ss_pred eecccccC
Q psy40 159 KIVCKYNI 166 (168)
Q Consensus 159 ~a~~~~~~ 166 (168)
++....|+
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 99765553
No 79
>KOG1457|consensus
Probab=99.19 E-value=5.6e-11 Score=83.78 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=96.0
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcc----------------cceeEEEecCCccchHHHHHhhhhhhc---------
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVE----------------AGVLEVVTTRPTINNKAMEEAQSEEEV--------- 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~----------------~~~~~v~~~~~~~~~~a~~~~~~~~~~--------- 62 (168)
-|+||||.+||-++...+|..+|+.|-. ...+|+.|.+.+.+..++...++....
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4789999999999999999999998742 146788898888888888876655411
Q ss_pred -----cCCC------CCCCCCCC--------ccc-------------C-----------------------------CC-
Q psy40 63 -----DMEI------PGPPHMDK--------LEI-------------G-----------------------------KP- 80 (168)
Q Consensus 63 -----~~~~------~~~~~~~~--------~~~-------------~-----------------------------~~- 80 (168)
+.+. ..+...+. ... + .+
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 0000 00000000 000 0 00
Q ss_pred ------------CCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-h
Q psy40 81 ------------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-F 146 (168)
Q Consensus 81 ------------~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~ 146 (168)
.......||||.||.. ++|++|+.+|+.|......+|-. + .|- ..||++|++.+.|..|+. +
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g~--~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GGM--PVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CCc--ceEeecHHHHHHHHHHHHHh
Confidence 0112346899999999 99999999999998766666532 2 232 489999999999999997 7
Q ss_pred CCcee
Q psy40 147 AFIEF 151 (168)
Q Consensus 147 ~~~~i 151 (168)
++..|
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 76554
No 80
>KOG4210|consensus
Probab=99.18 E-value=2.5e-11 Score=90.66 Aligned_cols=157 Identities=18% Similarity=0.116 Sum_probs=112.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhhhccCCCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEEEVDMEIPGPPHMD 73 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 73 (168)
.+|.|+|++.+.+.+.+...++...|....+...+.... ....++..+.................
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 579999999999999999999999997776665542222 33444444333221111111111111
Q ss_pred Ccc-c---CCCCCCCCCcEEE-EeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhC
Q psy40 74 KLE-I---GKPEANATVKKMF-VGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFA 147 (168)
Q Consensus 74 ~~~-~---~~~~~~~~~~~l~-V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~ 147 (168)
... . ..........++| |++++. +++++|+.+|..+|.|..++++.++.++..+||||+.|.+...+.+++..+
T Consensus 168 ~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~ 247 (285)
T KOG4210|consen 168 RGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQ 247 (285)
T ss_pred ccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcc
Confidence 100 0 1111223345566 999999 999999999999999999999999999999999999999999999999777
Q ss_pred CceeCCcee-Eeeeccccc
Q psy40 148 FIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 148 ~~~i~G~~i-v~~a~~~~~ 165 (168)
.+.+.|+++ +.+..|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 248 TRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred cCcccCcccccccCCCCcc
Confidence 788999999 999888754
No 81
>KOG4212|consensus
Probab=99.13 E-value=1.4e-10 Score=88.85 Aligned_cols=75 Identities=15% Similarity=0.257 Sum_probs=67.1
Q ss_pred CCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 81 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 81 ~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
....+.++|||+|||+ +||..|++-|..||.|..+.|+ ++|+++| .|.|.++++|++|+. |++..++||.| |
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 3445678999999999 9999999999999999999884 3588877 899999999999999 99999999999 9
Q ss_pred eee
Q psy40 158 DKI 160 (168)
Q Consensus 158 ~~a 160 (168)
.+.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 763
No 82
>KOG0226|consensus
Probab=99.13 E-value=7e-11 Score=84.65 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=78.9
Q ss_pred CcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee
Q psy40 74 KLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF 151 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i 151 (168)
+++....+.....-+||.|.|.. ++++.|...|.+|-.-...++++|+.||+++||+||-|.+..++..|+. |++..+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 34444444555667999999999 9999999999999998899999999999999999999999999999998 999999
Q ss_pred CCcee-Eeeeccc
Q psy40 152 NDYDV-VDKIVCK 163 (168)
Q Consensus 152 ~G~~i-v~~a~~~ 163 (168)
+.|+| .+.+..+
T Consensus 258 gsrpiklRkS~wk 270 (290)
T KOG0226|consen 258 GSRPIKLRKSEWK 270 (290)
T ss_pred ccchhHhhhhhHH
Confidence 99999 8776554
No 83
>KOG1548|consensus
Probab=99.06 E-value=2e-09 Score=80.33 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=99.2
Q ss_pred ceeEE-EEECCceeeeecccchhHhhhhccc----------------------ceeEEEecCCccchHHHHHhhhhhhcc
Q psy40 7 IVVST-VYSGSGGWWFESKCPSHEVRLAVEA----------------------GVLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 7 ~~~~t-lfvg~l~~~~~~~~l~~~f~~~g~~----------------------~~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
..++| |||.|||.+++.+...++|++||-+ +.+.+.+.+..++.-|+..+.......
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45566 9999999999999999999999853 334455545556666655544443221
Q ss_pred CCCCCCCCC------------------CC--------------cccCCCCCCCCCcEEEEeCC--CC---CC-------H
Q psy40 64 MEIPGPPHM------------------DK--------------LEIGKPEANATVKKMFVGGL--KD---QE-------E 99 (168)
Q Consensus 64 ~~~~~~~~~------------------~~--------------~~~~~~~~~~~~~~l~V~nl--p~---~t-------~ 99 (168)
..+...++. .. .....+......++|.+.|+ |. .+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 111111000 00 00112233345689999998 22 33 2
Q ss_pred HHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 100 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 100 ~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
++|++-.++||.|.+|.+--. .+.|-+-|.|.+.+.|.+||. |+|..++||.| ...
T Consensus 291 edl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 345566788999999976432 457899999999999999999 99999999999 543
No 84
>KOG0116|consensus
Probab=99.05 E-value=5.9e-10 Score=86.79 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=66.7
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
...+|||+|||+ ++.++|++.|.+||.|...+|..-...++..+||||+|.+.+.+..||..+...|+|+++ |+--++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 345699999999 999999999999999998887765433444489999999999999999988899999999 875544
No 85
>KOG0533|consensus
Probab=99.04 E-value=1.1e-09 Score=79.35 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
...+|+|.|||. ++++||+++|..||.+..+.+..++ +|.+.|.|-|.|...++|.+|++ +++..++|+++ +....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 347899999999 9999999999999999999888877 69999999999999999999998 99999999999 66543
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.00 E-value=4.5e-09 Score=65.92 Aligned_cols=76 Identities=11% Similarity=0.214 Sum_probs=65.3
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhc--CCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC---Ccee--E
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQ--FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN---DYDV--V 157 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~--~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~---G~~i--v 157 (168)
+||.++|+|. .|.++|.+++.. .|....+.+|-|-.++-..|||||.|.+.+.|.+-.+ +++..+. ..++ |
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999 999999999976 3678899999999888999999999999999999987 8887664 4455 7
Q ss_pred eeecc
Q psy40 158 DKIVC 162 (168)
Q Consensus 158 ~~a~~ 162 (168)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77753
No 87
>KOG4209|consensus
Probab=98.96 E-value=1.2e-09 Score=79.20 Aligned_cols=77 Identities=22% Similarity=0.377 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
.....+||+|+.+ +|.+++..+|+.+|.+..+.++.|+.+|.++||+||.|.+.+.++.|+.+++..|.|+.+ |.+-
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 3457899999999 888889999999999999999999999999999999999999999999999999999999 6654
No 88
>KOG0151|consensus
Probab=98.86 E-value=5.2e-09 Score=84.55 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=69.7
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCC---CCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~---tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
...++|||+||++ ++++.|-..|..||.+..++|+..+. ..+.+.||||.|-++.+|++|++ +++..+.++.+ +
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 4567899999999 99999999999999999999987652 22356799999999999999998 99999999999 9
Q ss_pred eeecc
Q psy40 158 DKIVC 162 (168)
Q Consensus 158 ~~a~~ 162 (168)
.|+++
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99843
No 89
>KOG1190|consensus
Probab=98.85 E-value=7.6e-08 Score=73.55 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=65.2
Q ss_pred CcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 86 VKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 86 ~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
+..|-|.||.. +|.+.|--+|+-||.|.+|.|..++. --|.|+|.+...|..|++ ++++.+.|++| |.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57899999977 99999999999999999999998763 369999999999999999 99999999999 99885
No 90
>KOG4454|consensus
Probab=98.83 E-value=1.5e-09 Score=76.38 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=66.3
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+||||+|+-. ++|+.|.++|-+-|.|.+|.|+.++. +..+ ||||.|.+..+..-|++ +++..+.++.+ +.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 458999999999 99999999999999999999998875 5666 99999999999999999 99999999988 653
No 91
>KOG4660|consensus
Probab=98.81 E-value=4.7e-09 Score=82.67 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=62.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
..+.++|+|-|||. +++++|..+|+.||+|..|+. |...+|..||+|.+..+|++|++ +++.++.|++|
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 45678999999999 999999999999999999765 44568899999999999999998 99999999887
No 92
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.79 E-value=1.7e-08 Score=74.38 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=94.0
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCC---
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPH--- 71 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 71 (168)
.+|||||||+.++++.|.++|..+|.+ +.++|.|..+..+..|+..+++.......+.....
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~ 195 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPA 195 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccc
Confidence 799999999999999999999999987 44666666666888888887755543333322221
Q ss_pred -CCCccc--------------CCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEc
Q psy40 72 -MDKLEI--------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135 (168)
Q Consensus 72 -~~~~~~--------------~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~ 135 (168)
.++... ...........+++.+++. ++...+...|..+|.+....+...........+.++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (306)
T COG0724 196 SQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNE 275 (306)
T ss_pred cccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchh
Confidence 111111 1122334567899999999 999999999999999987777665543334455555555
Q ss_pred CHHHHHHHHh
Q psy40 136 DYDVVDKIRG 145 (168)
Q Consensus 136 ~~~~a~~ai~ 145 (168)
....+.....
T Consensus 276 ~~~~~~~~~~ 285 (306)
T COG0724 276 ASKDALESNS 285 (306)
T ss_pred HHHhhhhhhc
Confidence 5555444443
No 93
>KOG0120|consensus
Probab=98.78 E-value=2.9e-08 Score=78.60 Aligned_cols=153 Identities=13% Similarity=0.177 Sum_probs=104.7
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMD 73 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 73 (168)
...+|||+||..+.++.+++..+.||.+ +.++-.+.++..+..|....++....+..+-...+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 3589999999999999999999998864 4567777777777777777666654433322221111
Q ss_pred CcccC------------------CCCCCCCCcEEEEeCC--CC--CCHH-------HHHHHHhcCCcEeEEEEeccCCCC
Q psy40 74 KLEIG------------------KPEANATVKKMFVGGL--KD--QEED-------DLREYFSQFGTIESVNMVTNKETG 124 (168)
Q Consensus 74 ~~~~~------------------~~~~~~~~~~l~V~nl--p~--~t~~-------~L~~~F~~~G~v~~v~i~~d~~tg 124 (168)
..... ......+...|.+-|+ |. .+++ +++.-+++||.|..|.++++-..+
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~ 448 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDE 448 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCC
Confidence 10000 0122234455665555 22 3333 345556779999999999883222
Q ss_pred ---CceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 125 ---AKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 125 ---~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
...|.-||+|++.+++.+|++ |.|.++.||.+ ..|-.
T Consensus 449 ~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 449 NPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 346899999999999999998 99999999999 77653
No 94
>KOG0120|consensus
Probab=98.74 E-value=3.6e-08 Score=78.09 Aligned_cols=81 Identities=30% Similarity=0.570 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...+.+||++||. .++..++++...||.+..-+++.|..+|-++||||.+|-+......|++ +++..+.+..+ |.+|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4557899999999 9999999999999999999999999999999999999999999999998 99999999999 8887
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.+..
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 6543
No 95
>KOG0112|consensus
Probab=98.69 E-value=3e-08 Score=82.02 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=97.8
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCC-ccchHHHHHhhhh---hhccCCCCCCCCCCCcccC--CCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRP-TINNKAMEEAQSE---EEVDMEIPGPPHMDKLEIG--KPEAN 83 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~-~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~ 83 (168)
.|||+|||+..+++..++..|+.+|.+..+.+..-.. +....+....++. .........+......... .....
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ks 452 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKS 452 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccccc
Confidence 5999999999999999999999998877666554322 1111111111111 1000011111000000000 01133
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC--cee-Ee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND--YDV-VD 158 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G--~~i-v~ 158 (168)
...+.+|+++|++ +....|...|..||.|..|.+-. |++ |++|+|++...+.+|+. |.+..|.| +++ |.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CCc--ceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 4567899999999 99999999999999999987632 344 99999999999999998 88888876 667 88
Q ss_pred eecc
Q psy40 159 KIVC 162 (168)
Q Consensus 159 ~a~~ 162 (168)
++.+
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 8754
No 96
>KOG1548|consensus
Probab=98.68 E-value=1e-07 Score=71.37 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=68.8
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEe--------EEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIE--------SVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDY 154 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~--------~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~ 154 (168)
.+..|||.|||. +|.+++.++|+++|-|. .|.+-++.. |+.+|=|.+.|.-.++.+.|+. ++...+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345699999999 99999999999999874 367888774 9999999999999999999999 999999999
Q ss_pred ee-Eeeecc
Q psy40 155 DV-VDKIVC 162 (168)
Q Consensus 155 ~i-v~~a~~ 162 (168)
.| |..|+-
T Consensus 212 ~~rVerAkf 220 (382)
T KOG1548|consen 212 KLRVERAKF 220 (382)
T ss_pred EEEEehhhh
Confidence 99 998854
No 97
>KOG0106|consensus
Probab=98.66 E-value=2.6e-08 Score=70.92 Aligned_cols=68 Identities=25% Similarity=0.468 Sum_probs=61.5
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~ 162 (168)
..+||++||+ +.+.+|..+|..||.+..+.+. .||+||+|.+..+|.-|+. +++..+.|-.+ |.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3689999999 9999999999999999998763 4699999999999999997 99999998888 988875
No 98
>KOG4211|consensus
Probab=98.63 E-value=2e-07 Score=72.72 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=64.3
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeeccc
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~~ 163 (168)
..-|-+++||| +|+++|.++|+.. .|+++.+++. +|+..|-|||+|++.+++++|++.+...+..|.| |-.+.+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 35677899999 9999999999988 6777777764 6999999999999999999999988888888888 8766543
No 99
>KOG1457|consensus
Probab=98.63 E-value=4.9e-07 Score=64.15 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=62.4
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEe-ccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC---Ccee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMV-TNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN---DYDV 156 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~-~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~---G~~i 156 (168)
....+||||.+||. +-..+|.-+|..|-.-+...+- +++.....+-+||++|.+..+|.+|+. ++|..++ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 44579999999999 9999999999998655554432 222212234699999999999999998 9998886 6777
Q ss_pred -Eeeeccc
Q psy40 157 -VDKIVCK 163 (168)
Q Consensus 157 -v~~a~~~ 163 (168)
+.+|+..
T Consensus 111 hiElAKSN 118 (284)
T KOG1457|consen 111 HIELAKSN 118 (284)
T ss_pred EeeehhcC
Confidence 7777654
No 100
>KOG1190|consensus
Probab=98.51 E-value=1.9e-06 Score=66.08 Aligned_cols=149 Identities=9% Similarity=0.039 Sum_probs=98.3
Q ss_pred EEEEECCc-eeeeecccchhHhhhhcccceeEEEecCCc----------cchHHHHHhhhhhhccCCCCCC------CCC
Q psy40 10 STVYSGSG-GWWFESKCPSHEVRLAVEAGVLEVVTTRPT----------INNKAMEEAQSEEEVDMEIPGP------PHM 72 (168)
Q Consensus 10 ~tlfvg~l-~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~------~~~ 72 (168)
+.|-|.|| .+.++.+.|.-+|..||++..+.+++.+.. .+.-|+....+....+..+... ...
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 45667776 477889999999999999877776665554 4444444433333222211111 001
Q ss_pred CCcc-----------------cCCCC------CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCcee
Q psy40 73 DKLE-----------------IGKPE------ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRG 128 (168)
Q Consensus 73 ~~~~-----------------~~~~~------~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g 128 (168)
+++- -.+++ --.++.+|.+.|+|. ++|++|+..|..-|...+.... -++.+-
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~k 453 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRK 453 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcc
Confidence 1100 00111 114567999999999 9999999999998876554322 123344
Q ss_pred EEEEEEcCHHHHHHHHh-hCCceeCCc-ee-Eeeecc
Q psy40 129 FAFIEFNDYDVVDKIRG-FAFIEFNDY-DV-VDKIVC 162 (168)
Q Consensus 129 ~afV~f~~~~~a~~ai~-~~~~~i~G~-~i-v~~a~~ 162 (168)
+|.+++++.+.|..|+- ++++.+.+. .+ |+|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999997 999999765 56 999874
No 101
>KOG0128|consensus
Probab=98.50 E-value=3.6e-08 Score=81.17 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=102.1
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMD 73 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 73 (168)
..|+||.||+..+.++.|+..|..++-+. -|.++|..+..+.+++....+....
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-----------
Confidence 35899999999999999999998877543 3556666666666666443222211
Q ss_pred CcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee
Q psy40 74 KLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF 151 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i 151 (168)
...++|.|.|+ .|.+.|+.+++.+|.+.+.+++..+ .|+++|.|||.|.+..++.+++. .....+
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhh
Confidence 25699999999 9999999999999999999988887 59999999999999999999986 666656
Q ss_pred CCcee-Eeeecc
Q psy40 152 NDYDV-VDKIVC 162 (168)
Q Consensus 152 ~G~~i-v~~a~~ 162 (168)
.-+.+ |..+.|
T Consensus 803 rE~~~~v~vsnp 814 (881)
T KOG0128|consen 803 RENNGEVQVSNP 814 (881)
T ss_pred hhcCccccccCC
Confidence 55555 555444
No 102
>KOG1995|consensus
Probab=98.50 E-value=1.6e-07 Score=70.69 Aligned_cols=85 Identities=28% Similarity=0.396 Sum_probs=75.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEe--------EEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIE--------SVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND 153 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~--------~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G 153 (168)
....++||.+||. +++.+|.++|.+.|.|. .+.+-+|++|++++|-|-|.|++...|.+|+. .++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3446899999999 99999999999999875 35678889999999999999999999999999 99999999
Q ss_pred cee-EeeecccccCCC
Q psy40 154 YDV-VDKIVCKYNIEF 168 (168)
Q Consensus 154 ~~i-v~~a~~~~~~~~ 168 (168)
..| |..|..+..++|
T Consensus 144 n~ikvs~a~~r~~ve~ 159 (351)
T KOG1995|consen 144 NTIKVSLAERRTGVES 159 (351)
T ss_pred CCchhhhhhhccCccc
Confidence 999 999887776665
No 103
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.45 E-value=1.7e-06 Score=52.22 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=45.1
Q ss_pred cEEEEeCCCC-CCHHH----HHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 87 KKMFVGGLKD-QEEDD----LREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~----L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
..|||.|||. .+... |++++..+| .|..|. .+-|.|.|.+.+.|.+|.. |++..+-|++| |+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999 88765 667777776 566651 2579999999999999998 99999999999 99
Q ss_pred eec
Q psy40 159 KIV 161 (168)
Q Consensus 159 ~a~ 161 (168)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 883
No 104
>KOG1365|consensus
Probab=98.45 E-value=1.7e-06 Score=65.96 Aligned_cols=148 Identities=15% Similarity=0.038 Sum_probs=99.4
Q ss_pred EEECCceeeeecccchhHhh-----hhc-------------ccceeEEEecCCccchHHHHHhhhhhh------------
Q psy40 12 VYSGSGGWWFESKCPSHEVR-----LAV-------------EAGVLEVVTTRPTINNKAMEEAQSEEE------------ 61 (168)
Q Consensus 12 lfvg~l~~~~~~~~l~~~f~-----~~g-------------~~~~~~v~~~~~~~~~~a~~~~~~~~~------------ 61 (168)
|=..+||++.++.++.+.|. ..| ..+++|++|..+..++.++.+......
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaa 243 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAA 243 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Confidence 44679999999999999995 111 235788888888888888877543320
Q ss_pred ---------ccCCCCCCCCCCCcc-cCC--CCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCc-EeE--EEEeccCCCCC
Q psy40 62 ---------VDMEIPGPPHMDKLE-IGK--PEANATVKKMFVGGLKD-QEEDDLREYFSQFGT-IES--VNMVTNKETGA 125 (168)
Q Consensus 62 ---------~~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~-v~~--v~i~~d~~tg~ 125 (168)
....+......+-.. .+. -........|-+++||+ .+.++|-++|..|-. |.. |.++-+. .|+
T Consensus 244 Evqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGr 322 (508)
T KOG1365|consen 244 EVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGR 322 (508)
T ss_pred HHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCC
Confidence 000011100111000 000 01112245788999999 999999999999874 443 6666665 589
Q ss_pred ceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 126 KRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 126 ~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
+.|-|||+|.+.+.|.+|.. .+++...+|.| |-.+
T Consensus 323 PSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 323 PSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred cChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 99999999999999999997 77666678888 6544
No 105
>KOG0147|consensus
Probab=98.42 E-value=1e-07 Score=75.22 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=71.2
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
-+|+|+--++. .+.-+|.++|+.+|.|..|+++.|+.++.++|.|||+|.+.++.-.||.+.|..+.|.+| |....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccH
Confidence 47888888889 999999999999999999999999999999999999999999999999999999999999 87653
No 106
>KOG0121|consensus
Probab=98.37 E-value=3.8e-07 Score=59.27 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=42.1
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSE 59 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~ 59 (168)
+|||||||++..+|+++.++|++||++ +.|||.+-.+..+..|++-..+.
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt 101 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT 101 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC
Confidence 699999999999999999999999986 45788887777888877664433
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.29 E-value=7.4e-06 Score=51.78 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=52.1
Q ss_pred CcEEEEeCCCCCCHHHHHHHHhcCCcEeEEE-EeccC------CCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee--
Q psy40 86 VKKMFVGGLKDQEEDDLREYFSQFGTIESVN-MVTNK------ETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-- 156 (168)
Q Consensus 86 ~~~l~V~nlp~~t~~~L~~~F~~~G~v~~v~-i~~d~------~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-- 156 (168)
.+-|.|-+.|+..-..+.++|++||+|.+.. +.++. ........-.|+|.++.+|.+||.-|+..+.|.-+
T Consensus 6 ~~wVtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvG 85 (100)
T PF05172_consen 6 ETWVTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVG 85 (100)
T ss_dssp CCEEEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEE
T ss_pred CeEEEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEE
Confidence 3568888999944556777899999987764 11110 00112358999999999999999999999999766
Q ss_pred Eeeeccc
Q psy40 157 VDKIVCK 163 (168)
Q Consensus 157 v~~a~~~ 163 (168)
|.++++.
T Consensus 86 V~~~~~~ 92 (100)
T PF05172_consen 86 VKPCDPA 92 (100)
T ss_dssp EEE-HHH
T ss_pred EEEcHHh
Confidence 9988653
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.27 E-value=5.2e-06 Score=46.37 Aligned_cols=52 Identities=15% Similarity=0.360 Sum_probs=41.6
Q ss_pred cEEEEeCCCCCCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHH
Q psy40 87 KKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIR 144 (168)
Q Consensus 87 ~~l~V~nlp~~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai 144 (168)
+.|-|.+.|+-..+.+..+|.+||+|..+++... ....+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5678889998334556668899999999988632 238999999999999985
No 109
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.24 E-value=5.8e-07 Score=60.92 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=40.9
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccceeEE---------------EecCCccchHHHHHhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEV---------------VTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v---------------~~~~~~~~~~a~~~~~~~~ 60 (168)
.-++|||+|||++++++.|+++|++||.+..+.+ .|.++..+..|+..++...
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~ 100 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 3458999999999999999999999998765555 4445557777776655443
No 110
>KOG0149|consensus
Probab=98.22 E-value=9e-07 Score=63.20 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=36.9
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccceeEEEecCCc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
...+||||+|+|....+.|++.|++||++..+.|+.++.+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t 50 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNT 50 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCC
Confidence 4679999999999999999999999999999988888776
No 111
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.12 E-value=6.8e-07 Score=52.50 Aligned_cols=49 Identities=14% Similarity=-0.054 Sum_probs=39.3
Q ss_pred EEECCceeeeecccchhHhhhhcccce--------------eEEEecCCccchHHHHHhhhhh
Q psy40 12 VYSGSGGWWFESKCPSHEVRLAVEAGV--------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 12 lfvg~l~~~~~~~~l~~~f~~~g~~~~--------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
|||+|||+++++..|++.|+.+|.+.. |+|.|.+...+.+|+...++..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~ 63 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKK 63 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCE
Confidence 799999999999999999999998754 4555555557888887766543
No 112
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.11 E-value=1.2e-05 Score=51.56 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=34.9
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~ 145 (168)
..|.+.+++. ++.++|++.|++||.|..|.+.+... -|||.|.+.+.|..|++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHH
Confidence 4688899999 99999999999999999999876432 79999999999999996
No 113
>KOG4849|consensus
Probab=98.11 E-value=2.8e-06 Score=64.07 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=62.4
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCC--cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G--~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
.-.+|||||-| +|++||-+....-| .+.++++..++.+|+++|||.|...+..+.++.++ +....|.|..-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 34699999999 99999999988877 67788888899999999999999999999999999 77788888654
No 114
>KOG3152|consensus
Probab=98.08 E-value=2.2e-06 Score=61.95 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=60.7
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCC--------CCce----eEEEEEEcCHHHHHHHHh-hCCce
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET--------GAKR----GFAFIEFNDYDVVDKIRG-FAFIE 150 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~t--------g~~~----g~afV~f~~~~~a~~ai~-~~~~~ 150 (168)
....||+++||+ +...-|+++|++||+|-+|.+.+...+ |... --|.|+|.+...|.++.+ +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 557899999999 999999999999999999999887655 2211 347899999999999998 99999
Q ss_pred eCCce
Q psy40 151 FNDYD 155 (168)
Q Consensus 151 i~G~~ 155 (168)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98875
No 115
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.05 E-value=2.4e-06 Score=62.65 Aligned_cols=51 Identities=12% Similarity=-0.010 Sum_probs=40.1
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc------------eeEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
.+||||||||+.+++.+|+++|+.||.+. .++|.|.++..+..++. .++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~ 66 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGAT 66 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCe
Confidence 57999999999999999999999999864 45566666667777774 34443
No 116
>KOG0107|consensus
Probab=98.02 E-value=4.4e-06 Score=57.25 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=47.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc----------ceeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.+.||||||+...++.+|..+|..+|.+ +.|||.|+++-++..|.....+...-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~c 73 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC 73 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCcccc
Confidence 5799999999999999999999999975 57899999999999999887766533
No 117
>KOG2193|consensus
Probab=97.96 E-value=3.6e-07 Score=70.33 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=103.7
Q ss_pred eEEEEECCceeeeecccchhHhhhhcc---------cceeEEEecCCccchHHHHHhhhhhhccCC-CCCCCCCCCcccC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVE---------AGVLEVVTTRPTINNKAMEEAQSEEEVDME-IPGPPHMDKLEIG 78 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~---------~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (168)
|+.+|+|||+...+..+|...|....- .+.+|+...+...+.++.+...+.....+. .....++++..
T Consensus 1 mnklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq-- 78 (584)
T KOG2193|consen 1 MNKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ-- 78 (584)
T ss_pred CCcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH--
Confidence 578999999999999999999986532 345667666667788888776655544333 23334444333
Q ss_pred CCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEE-eccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCce
Q psy40 79 KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNM-VTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYD 155 (168)
Q Consensus 79 ~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i-~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~ 155 (168)
.++.+-++|+|+ .-++.|-.+..+||.++.+.. .+|.+|- ..-|+|...+.+..||. ++++.+....
T Consensus 79 ------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 79 ------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred ------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 335689999999 999999999999999998864 3333322 33478999999999998 9988888888
Q ss_pred e-Eeee
Q psy40 156 V-VDKI 160 (168)
Q Consensus 156 i-v~~a 160 (168)
+ +.|-
T Consensus 149 ~k~~Yi 154 (584)
T KOG2193|consen 149 LKVGYI 154 (584)
T ss_pred hhcccC
Confidence 7 7764
No 118
>KOG4454|consensus
Probab=97.94 E-value=7.4e-07 Score=63.06 Aligned_cols=116 Identities=21% Similarity=0.156 Sum_probs=88.5
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce-------------eEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV-------------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLE 76 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~-------------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
.||||+|+...++|+.|.|+|-++|.+.- |+|.|.+.-++.-|++-+++.......+
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~---------- 79 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEE---------- 79 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchh----------
Confidence 59999999999999999999999987643 5566666666666666655544332222
Q ss_pred cCCCCCCCCCcEEEEeC----CCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh
Q psy40 77 IGKPEANATVKKMFVGG----LKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145 (168)
Q Consensus 77 ~~~~~~~~~~~~l~V~n----lp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~ 145 (168)
..+++-|+ |.. ++++.+...|++-|.++.+++.++.. |+.+.++|+++....+.-.++.
T Consensus 80 ---------q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 80 ---------QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred ---------hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhh
Confidence 13455555 666 88999999999999999999999986 8889999999877666666664
No 119
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.89 E-value=4.1e-05 Score=57.69 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=57.8
Q ss_pred cEEEEeCCCC-CCHHH----H--HHHHhcCCcEeEEEEeccCCCCCc-eeE--EEEEEcCHHHHHHHHh-hCCceeCCce
Q psy40 87 KKMFVGGLKD-QEEDD----L--REYFSQFGTIESVNMVTNKETGAK-RGF--AFIEFNDYDVVDKIRG-FAFIEFNDYD 155 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~----L--~~~F~~~G~v~~v~i~~d~~tg~~-~g~--afV~f~~~~~a~~ai~-~~~~~i~G~~ 155 (168)
.-+||-+||+ +..++ | .++|.+||.|..|.+-+...+-.+ .+. .||+|.+.++|.+||. .++..++||-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999988 44443 3 478999999999876544311111 122 4999999999999998 8999999999
Q ss_pred e-Eeeeccc
Q psy40 156 V-VDKIVCK 163 (168)
Q Consensus 156 i-v~~a~~~ 163 (168)
| +.+...|
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 9 8887554
No 120
>PLN03213 repressor of silencing 3; Provisional
Probab=97.84 E-value=7.8e-06 Score=64.37 Aligned_cols=58 Identities=9% Similarity=-0.190 Sum_probs=43.4
Q ss_pred ccceeEEEEECCceeeeecccchhHhhhhccccee-----------EEEecCC--ccchHHHHHhhhhhhc
Q psy40 5 SGIVVSTVYSGSGGWWFESKCPSHEVRLAVEAGVL-----------EVVTTRP--TINNKAMEEAQSEEEV 62 (168)
Q Consensus 5 ~~~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~-----------~v~~~~~--~~~~~a~~~~~~~~~~ 62 (168)
+|...-+||||||+|.++++.|...|..||.+..+ ||.+..+ ....+++...++..-.
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 45556799999999999999999999999987654 5555544 3466667666655533
No 121
>KOG2314|consensus
Probab=97.79 E-value=7.7e-05 Score=59.68 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=59.4
Q ss_pred CcEEEEeCCCCCCHH-------HHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC-Ccee
Q psy40 86 VKKMFVGGLKDQEED-------DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN-DYDV 156 (168)
Q Consensus 86 ~~~l~V~nlp~~t~~-------~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~-G~~i 156 (168)
...|+|.|+|-+..+ -|.++|+++|.+....++.+..+| .+||.|++|++..+|..|+. ++|+.|+ .+..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 367899999883322 367889999999999999988754 89999999999999999998 9988875 4555
Q ss_pred -Eee
Q psy40 157 -VDK 159 (168)
Q Consensus 157 -v~~ 159 (168)
|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 553
No 122
>KOG1456|consensus
Probab=97.76 E-value=0.00046 Score=52.84 Aligned_cols=143 Identities=10% Similarity=0.001 Sum_probs=94.6
Q ss_pred EEEECCceeeeecccchhHhhhhcccce---------eEEEecCCccchHHHHHhhhhh--------hccCCCCCCCCCC
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAGV---------LEVVTTRPTINNKAMEEAQSEE--------EVDMEIPGPPHMD 73 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------~~v~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ 73 (168)
-|-|.+|-..++|..|.+....||.+.. +.|.|++-..+...+.-+.... ..+..+......
T Consensus 33 vvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R- 111 (494)
T KOG1456|consen 33 VVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIER- 111 (494)
T ss_pred eEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhcc-
Confidence 5678899999999999999999998654 4455554443333322211111 001111111111
Q ss_pred CcccCCCCCCCCCcEEEEeCC--CC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCc
Q psy40 74 KLEIGKPEANATVKKMFVGGL--KD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFI 149 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~l~V~nl--p~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~ 149 (168)
...++..+++.|.+.=| -+ +|-+-|-.+....|.|.+|.|.+. +|. -|.|+|++.+.|.+|-. +++-
T Consensus 112 ----~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 112 ----PGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGA 182 (494)
T ss_pred ----CCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccc
Confidence 11223334455555544 34 999999999999999999988764 443 69999999999999998 9998
Q ss_pred eeC-C-cee-Eeeeccc
Q psy40 150 EFN-D-YDV-VDKIVCK 163 (168)
Q Consensus 150 ~i~-G-~~i-v~~a~~~ 163 (168)
+|. | ..| |++|+|.
T Consensus 183 DIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 183 DIYSGCCTLKIEYAKPT 199 (494)
T ss_pred cccccceeEEEEecCcc
Confidence 885 4 445 9999884
No 123
>KOG1456|consensus
Probab=97.73 E-value=0.00033 Score=53.59 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=67.1
Q ss_pred CCCCCcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 82 ANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
...+.+.++|-+|.. ++-+.|-.+|..||.|++|.+++.+ .|-|.|++.+....++|+. +++..+.|.+| |
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 345678899999988 8888899999999999999998765 3689999999999999999 99999999999 8
Q ss_pred eeecc
Q psy40 158 DKIVC 162 (168)
Q Consensus 158 ~~a~~ 162 (168)
..++.
T Consensus 358 ~~SkQ 362 (494)
T KOG1456|consen 358 CVSKQ 362 (494)
T ss_pred eeccc
Confidence 88764
No 124
>KOG1855|consensus
Probab=97.62 E-value=8.6e-05 Score=57.53 Aligned_cols=65 Identities=18% Similarity=0.395 Sum_probs=54.0
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEecc---CCC--CCc--------eeEEEEEEcCHHHHHHHHhh
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTN---KET--GAK--------RGFAFIEFNDYDVVDKIRGF 146 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d---~~t--g~~--------~g~afV~f~~~~~a~~ai~~ 146 (168)
...++++|.+.|||. -.-+.|.++|+.+|.|..|+|... ..+ |.+ +-||+|+|+..+.|.+|.++
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 345789999999999 888999999999999999998765 221 111 45899999999999999983
No 125
>KOG0125|consensus
Probab=97.60 E-value=7.1e-05 Score=56.15 Aligned_cols=67 Identities=10% Similarity=-0.014 Sum_probs=53.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeE-------------EEecCCccchHHHHHhhhhhhccCCCCCCCCCCCc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLE-------------VVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKL 75 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~-------------v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 75 (168)
-+.|+|.|||+.+-|.+|+..|++||.+.++. |.++++.++++|-.+.++......++....+..+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 35899999999999999999999999876655 44555668999998888888766666666555543
No 126
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.57 E-value=0.0004 Score=46.62 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCcEEEEeCCC------C-CCH---HHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCc
Q psy40 85 TVKKMFVGGLK------D-QEE---DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDY 154 (168)
Q Consensus 85 ~~~~l~V~nlp------~-~t~---~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~ 154 (168)
+..||.|.-+. . +.+ .+|-+.|.+||++.-+|++.+ .=+|+|.+..+|.+|+++++.+++|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCE
Confidence 34677776555 2 332 267788899999999988754 46899999999999999999999999
Q ss_pred ee-Eeeecc
Q psy40 155 DV-VDKIVC 162 (168)
Q Consensus 155 ~i-v~~a~~ 162 (168)
.| |+.-.|
T Consensus 98 ~l~i~LKtp 106 (146)
T PF08952_consen 98 TLKIRLKTP 106 (146)
T ss_dssp EEEEEE---
T ss_pred EEEEEeCCc
Confidence 99 876544
No 127
>KOG4307|consensus
Probab=97.56 E-value=0.0003 Score=57.80 Aligned_cols=71 Identities=13% Similarity=0.249 Sum_probs=59.8
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcE-eEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTI-ESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v-~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
+.|-+.|+|+ ++-+||-++|+.|-.+ .+|.+-.+ +.|.+.|-+.|.|++.++|.+|.. +++..|..|.+ +.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3788999999 9999999999999644 35555444 458999999999999999999997 89999988887 54
No 128
>KOG0114|consensus
Probab=97.55 E-value=6.9e-05 Score=47.14 Aligned_cols=54 Identities=13% Similarity=-0.118 Sum_probs=44.8
Q ss_pred ceeEEEEECCceeeeecccchhHhhhhcccc------------eeEEEecCCccchHHHHHhhhhh
Q psy40 7 IVVSTVYSGSGGWWFESKCPSHEVRLAVEAG------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 7 ~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
.+=+-|||.|||++++.++..++|-++|.+. .|||+.++-..+.+|+..+.+-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 4447899999999999999999999999764 57788888888888887765544
No 129
>smart00362 RRM_2 RNA recognition motif.
Probab=97.51 E-value=7.3e-05 Score=43.30 Aligned_cols=47 Identities=13% Similarity=-0.105 Sum_probs=35.9
Q ss_pred EEEECCceeeeecccchhHhhhhcccc-------------eeEEEecCCccchHHHHHhh
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAG-------------VLEVVTTRPTINNKAMEEAQ 57 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~-------------~~~v~~~~~~~~~~a~~~~~ 57 (168)
||||+|||+.+++..|++.|..+|.+. .+++.+.++..+.+++...+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~ 60 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhC
Confidence 699999999999999999999999754 44555555556666665443
No 130
>KOG0132|consensus
Probab=97.51 E-value=9.2e-05 Score=61.23 Aligned_cols=96 Identities=13% Similarity=-0.048 Sum_probs=61.5
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce---------eEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcccCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV---------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKP 80 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
+|||||+|+..+++..|..+|+.||++.. |+|...+-.++.+|++++.+.......+....+..+.... .
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks-e 500 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS-E 500 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch-h
Confidence 59999999999999999999999999864 5666666678999998887555555444333333222111 0
Q ss_pred CCCCCCcEEEEeCCCC--CCHHHHHHHHh
Q psy40 81 EANATVKKMFVGGLKD--QEEDDLREYFS 107 (168)
Q Consensus 81 ~~~~~~~~l~V~nlp~--~t~~~L~~~F~ 107 (168)
-...-...+=|.-||+ ++.+ |+.+..
T Consensus 501 ~k~~wD~~lGVt~IP~~kLt~d-l~~~~e 528 (894)
T KOG0132|consen 501 YKDYWDVELGVTYIPWEKLTDD-LEAWCE 528 (894)
T ss_pred hhhhhhcccCeeEeehHhcCHH-HHHhhh
Confidence 0011112233445688 6665 655543
No 131
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.51 E-value=5.9e-05 Score=54.69 Aligned_cols=45 Identities=9% Similarity=-0.227 Sum_probs=36.0
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeEE------------EecCCccchHHH
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEV------------VTTRPTINNKAM 53 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v------------~~~~~~~~~~a~ 53 (168)
..||||+||++..++..|+++|+.||.+..+.+ .|.++..+..|+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl 61 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV 61 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH
Confidence 369999999999999999999999998766554 455555565555
No 132
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.50 E-value=4.6e-05 Score=44.79 Aligned_cols=46 Identities=11% Similarity=-0.157 Sum_probs=34.5
Q ss_pred EEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhh
Q psy40 12 VYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQ 57 (168)
Q Consensus 12 lfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~ 57 (168)
|||+|||+++++++|.+.|+.+|.+. .|+|.+.++..+.+++...+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 79999999999999999999998654 45555656667777776654
No 133
>KOG4285|consensus
Probab=97.46 E-value=0.0014 Score=48.90 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=58.1
Q ss_pred CcEEEEeCCCCCCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee--Eeeeccc
Q psy40 86 VKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV--VDKIVCK 163 (168)
Q Consensus 86 ~~~l~V~nlp~~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i--v~~a~~~ 163 (168)
..=|-|-++|+-.-..+..+|++||+|.+.... ....+-+|.|.++.+|.+||..++..|+|.-+ |+.+..|
T Consensus 197 D~WVTVfGFppg~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccchhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 344666788884445667789999999886543 22348999999999999999999999999877 9888766
Q ss_pred ccC
Q psy40 164 YNI 166 (168)
Q Consensus 164 ~~~ 166 (168)
..+
T Consensus 271 svi 273 (350)
T KOG4285|consen 271 SVI 273 (350)
T ss_pred HHh
Confidence 543
No 134
>KOG0129|consensus
Probab=97.42 E-value=0.00071 Score=53.73 Aligned_cols=61 Identities=28% Similarity=0.522 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccC---CCCCcee---EEEEEEcCHHHHHHHHh
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNK---ETGAKRG---FAFIEFNDYDVVDKIRG 145 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~---~tg~~~g---~afV~f~~~~~a~~ai~ 145 (168)
.-+++||||+||+ ++|+.|...|..||.+ .|..+... ..-.++| |+|+.|+++.+...-|.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 4568999999999 9999999999999986 34454211 1123567 99999999887766664
No 135
>KOG1365|consensus
Probab=97.41 E-value=0.0016 Score=50.09 Aligned_cols=142 Identities=15% Similarity=0.033 Sum_probs=87.4
Q ss_pred EECCceeeeecccchhHhhhhc---------------ccceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCc--
Q psy40 13 YSGSGGWWFESKCPSHEVRLAV---------------EAGVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKL-- 75 (168)
Q Consensus 13 fvg~l~~~~~~~~l~~~f~~~g---------------~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 75 (168)
=..+|||...+..+...|+-.- .-+.+.+.|.++...+-+++... .......++...+...+
T Consensus 64 RaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhk-hh~g~ryievYka~ge~f~ 142 (508)
T KOG1365|consen 64 RARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHK-HHMGTRYIEVYKATGEEFL 142 (508)
T ss_pred EecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhh-hhccCCceeeeccCchhhe
Confidence 3468899999998888887432 12346677777665555554422 11111111111111110
Q ss_pred -------cc-CCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhc----CCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHH
Q psy40 76 -------EI-GKPEANATVKKMFVGGLKD-QEEDDLREYFSQ----FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142 (168)
Q Consensus 76 -------~~-~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~----~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ 142 (168)
.. ...-+....-.|-+++||+ +++.++..+|.. -|..+.+-+++.. .|+..|-|||.|...++|..
T Consensus 143 ~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~ 221 (508)
T KOG1365|consen 143 KIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQF 221 (508)
T ss_pred EecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHH
Confidence 00 0011112223577789999 999999999963 2355666666644 58999999999999999999
Q ss_pred HHhhCCceeCCcee
Q psy40 143 IRGFAFIEFNDYDV 156 (168)
Q Consensus 143 ai~~~~~~i~G~~i 156 (168)
|+.-+...+.-|.|
T Consensus 222 aL~khrq~iGqRYI 235 (508)
T KOG1365|consen 222 ALRKHRQNIGQRYI 235 (508)
T ss_pred HHHHHHHHHhHHHH
Confidence 99766666655555
No 136
>KOG0113|consensus
Probab=97.33 E-value=0.00011 Score=54.45 Aligned_cols=55 Identities=9% Similarity=-0.076 Sum_probs=43.0
Q ss_pred cceeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhh
Q psy40 6 GIVVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 6 ~~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
|.-.+||||+-|+++.+|..|+.+|+.||.+. .|||++..+.....|...+.+..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 33457999999999999999999999999864 56666666666777776666544
No 137
>KOG0128|consensus
Probab=97.31 E-value=1.1e-05 Score=67.03 Aligned_cols=72 Identities=33% Similarity=0.387 Sum_probs=61.6
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV 156 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i 156 (168)
...++||.||+. +.+.+|...|..+|.+..+++.--..+++.||.||+.|.+.+.+.+|+.+....+.|+..
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~ 738 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKIS 738 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhh
Confidence 346799999999 999999999999999888876644557899999999999999999999977776666544
No 138
>KOG0126|consensus
Probab=97.24 E-value=0.00015 Score=50.26 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=34.0
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCCc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
+=|||||||++.+|..|...|++||++.++.++.+..+
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~T 73 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKT 73 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCC
Confidence 46999999999999999999999999988877776665
No 139
>KOG4307|consensus
Probab=97.18 E-value=0.0015 Score=53.92 Aligned_cols=156 Identities=13% Similarity=-0.004 Sum_probs=98.7
Q ss_pred ccccceeEEEEE--CCceeeeecccchhHhhhh-------------c-ccceeEEEecCCccchHHHHHhhhhhhc----
Q psy40 3 KLSGIVVSTVYS--GSGGWWFESKCPSHEVRLA-------------V-EAGVLEVVTTRPTINNKAMEEAQSEEEV---- 62 (168)
Q Consensus 3 ~~~~~~~~tlfv--g~l~~~~~~~~l~~~f~~~-------------g-~~~~~~v~~~~~~~~~~a~~~~~~~~~~---- 62 (168)
+...++..|+|+ .+.+++......+++|.-. + ..+.+.|.|..++..++|+.........
T Consensus 303 stpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q 382 (944)
T KOG4307|consen 303 STPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQ 382 (944)
T ss_pred CCCcccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhccee
Confidence 333445556665 4566777777777776522 1 2567889999999999987664433211
Q ss_pred ------cCCCC------------------CCCCCCC----cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEe
Q psy40 63 ------DMEIP------------------GPPHMDK----LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIE 113 (168)
Q Consensus 63 ------~~~~~------------------~~~~~~~----~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~ 113 (168)
..... .+...++ .-+..+........|||..||. +++.++-+.|..--.|+
T Consensus 383 ~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ve 462 (944)
T KOG4307|consen 383 TGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVE 462 (944)
T ss_pred ecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhh
Confidence 00000 0000000 0011122334567899999999 99999999998877777
Q ss_pred E-EEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 114 S-VNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 114 ~-v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
+ |.|-+-. +++.++-|||.|.+.+.+..|.. -+.+.+..|.| |.-
T Consensus 463 d~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 463 DFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred heeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 6 6665544 67888999999999888888876 44444555555 653
No 140
>KOG0115|consensus
Probab=97.13 E-value=0.00062 Score=49.57 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=59.2
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCC----ceeCCcee-Eee
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAF----IEFNDYDV-VDK 159 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~----~~i~G~~i-v~~ 159 (168)
..|||.||+. ++.+.|...|+.||.|+...+..|. .+++.+-++|.|...-.|.+|+. ..- ....+++. |..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 5799999999 9999999999999999987766665 48888999999999999999986 421 23456665 554
Q ss_pred e
Q psy40 160 I 160 (168)
Q Consensus 160 a 160 (168)
+
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 141
>KOG2202|consensus
Probab=97.04 E-value=0.00029 Score=51.21 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=46.4
Q ss_pred HHHHHh-cCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 102 LREYFS-QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 102 L~~~F~-~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
+...|+ +||+|+.+.+-.+. .-...|=+||.|...++|++|++ +++..+.|++| +.++
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 333444 89999998664433 23457899999999999999998 99999999999 7766
No 142
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.03 E-value=0.00051 Score=39.83 Aligned_cols=33 Identities=9% Similarity=-0.066 Sum_probs=27.4
Q ss_pred EEEECCceeeeecccchhHhhhhcccceeEEEe
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVT 43 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~ 43 (168)
+|+|++||+.+++..+++.|..+|.+....+..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~ 33 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVR 33 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEee
Confidence 589999999999999999999998764444443
No 143
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.96 E-value=0.0088 Score=34.29 Aligned_cols=52 Identities=15% Similarity=0.370 Sum_probs=44.0
Q ss_pred cEEEEeCCCCCCHHHHHHHHhcC---CcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh
Q psy40 87 KKMFVGGLKDQEEDDLREYFSQF---GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145 (168)
Q Consensus 87 ~~l~V~nlp~~t~~~L~~~F~~~---G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~ 145 (168)
.+|+|.|+..++.++++.+|..| ....+|..+-|. -+-|.|.+.+.|.+||.
T Consensus 6 eavhirGvd~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVDELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 67999999888889999999998 235688888775 47799999999999985
No 144
>KOG4660|consensus
Probab=96.81 E-value=0.0023 Score=51.30 Aligned_cols=144 Identities=13% Similarity=-0.035 Sum_probs=90.7
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc----------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCccc--
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG----------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEI-- 77 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~----------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-- 77 (168)
+||+|-|||..++++.|...|..+|++. .++|.|-+-..+++|+++.+..+....++..+....+...
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~~~~ 155 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRAMGLQ 155 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccccchhc
Confidence 5999999999999999999999999874 4667777777888888887777755555443322211100
Q ss_pred --------------CCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHH
Q psy40 78 --------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142 (168)
Q Consensus 78 --------------~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ 142 (168)
..+........+ ++.|++ .+...++.+++.+|.+.. +- ++...---|+.|.+..++..
T Consensus 156 ~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 156 SGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred ccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhhccccchhh
Confidence 001111222334 344888 888888888888888765 32 23222255677777777755
Q ss_pred HHhhCCceeCCcee-Eeee
Q psy40 143 IRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 143 ai~~~~~~i~G~~i-v~~a 160 (168)
+..-.+..+.+... ..++
T Consensus 229 ~~~~~G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 229 SEPRGGFLISNSSGVITFS 247 (549)
T ss_pred cccCCceecCCCCceEEec
Confidence 55411444444444 4443
No 145
>KOG2193|consensus
Probab=96.77 E-value=0.0011 Score=51.56 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=55.5
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCC-ceeCCcee-Eeeecc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAF-IEFNDYDV-VDKIVC 162 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~-~~i~G~~i-v~~a~~ 162 (168)
.++|++||.+ .+..+|..+|..--.-.+-.++. ..||+||...+...|.+|++ +++ .++.|.++ +..+.|
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999 99999999987541101111111 24799999999999999998 655 56899999 999988
Q ss_pred ccc
Q psy40 163 KYN 165 (168)
Q Consensus 163 ~~~ 165 (168)
+.+
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 764
No 146
>KOG4207|consensus
Probab=96.61 E-value=0.0016 Score=46.20 Aligned_cols=57 Identities=5% Similarity=-0.135 Sum_probs=46.8
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhhccC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEEVDM 64 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~~~~ 64 (168)
.|-+|-|-||.+-.+.+.|...|++||.+++ +||.|.+-..++.|++.+.+......
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 4679999999999999999999999999876 45666666688999988877764433
No 147
>KOG0111|consensus
Probab=96.57 E-value=0.00078 Score=48.11 Aligned_cols=68 Identities=13% Similarity=-0.070 Sum_probs=53.1
Q ss_pred cccceeEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCCCC
Q psy40 4 LSGIVVSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPG 68 (168)
Q Consensus 4 ~~~~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~ 68 (168)
+....=+|||||+|..+++|.-|...|-.||.+ +.+||.|+....+..|+..++.......++..
T Consensus 5 ~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 5 QMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 334455799999999999999999999999976 35788888888888899888877755555444
Q ss_pred CCC
Q psy40 69 PPH 71 (168)
Q Consensus 69 ~~~ 71 (168)
..+
T Consensus 85 N~A 87 (298)
T KOG0111|consen 85 NLA 87 (298)
T ss_pred eec
Confidence 433
No 148
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.48 E-value=0.025 Score=34.38 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=39.2
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~ 145 (168)
+..+|. .|. +-..||.++|+.||.| .|..+.|. -|||...+++.+..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHH
Confidence 566676 999 9999999999999997 67777663 69999999999998886
No 149
>KOG1996|consensus
Probab=96.36 E-value=0.016 Score=43.36 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCcEeEEEEeccCCCCCc-eeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 99 EDDLREYFSQFGTIESVNMVTNKETGAK-RGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 99 ~~~L~~~F~~~G~v~~v~i~~d~~tg~~-~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
+++.+...++||.|..|-|..+...... .---||+|+..++|.+|+- +++..|.||.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3467888899999999987766432222 2358999999999999996 99999999987
No 150
>KOG2068|consensus
Probab=96.30 E-value=0.0018 Score=48.98 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=58.8
Q ss_pred cEEEEeCCCC--CCHHHHH--HHHhcCCcEeEEEEeccCC--CCC-ceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 87 KKMFVGGLKD--QEEDDLR--EYFSQFGTIESVNMVTNKE--TGA-KRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 87 ~~l~V~nlp~--~t~~~L~--~~F~~~G~v~~v~i~~d~~--tg~-~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
+-+||-+|+. ..+..|+ ++|.+||.|..|.+-++.. .+. ...-++|+|+..++|..||. .++...+|+.+ .
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4588889988 5555554 5789999999998877651 111 12348999999999999998 88888999987 7
Q ss_pred eeecccc
Q psy40 158 DKIVCKY 164 (168)
Q Consensus 158 ~~a~~~~ 164 (168)
.++.++.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7766554
No 151
>KOG4676|consensus
Probab=96.27 E-value=0.0038 Score=48.25 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=50.9
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCC
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G 153 (168)
++++|++|+. +...++-+.|..+|+|....+... ...-++-+.|....+...|+.+++..+.-
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~k~ 215 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRERKR 215 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhhhh
Confidence 7899999999 999999999999999987766432 22335669999988999999888776653
No 152
>smart00360 RRM RNA recognition motif.
Probab=96.26 E-value=0.0023 Score=36.57 Aligned_cols=30 Identities=7% Similarity=-0.199 Sum_probs=24.5
Q ss_pred ECCceeeeecccchhHhhhhcccceeEEEe
Q psy40 14 SGSGGWWFESKCPSHEVRLAVEAGVLEVVT 43 (168)
Q Consensus 14 vg~l~~~~~~~~l~~~f~~~g~~~~~~v~~ 43 (168)
|+|||+.+++..|++.|+.+|.+..+.+..
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~ 30 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVR 30 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEe
Confidence 689999999999999999999765444443
No 153
>KOG4676|consensus
Probab=96.12 E-value=0.0092 Score=46.19 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=59.8
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCC---CCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eee
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDK 159 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~t---g~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~ 159 (168)
..|-|.||.+ +|.+.++.+|+..|.|..+++...... ......|||.|.+...+..|--+.+..+-++.| |-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 4799999999 999999999999999999988764321 123458999999999998888787888888887 543
No 154
>KOG0108|consensus
Probab=96.06 E-value=0.0042 Score=49.36 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=40.8
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~ 60 (168)
++|||||+|++++++.|...|+..|.+.+...+.++.+ .+.+|++..++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~ 84 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE 84 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc
Confidence 78999999999999999999999998766555555444 6777777766655
No 155
>KOG0112|consensus
Probab=96.04 E-value=0.0016 Score=55.04 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=58.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
..++|||+|||+. +++.+|+..|..+|.|..|.|-+.+- ++---|||+.|.+...+-.|.. +.+..|..-.+ +.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4678999999999 99999999999999999998876643 3333499999999888888875 66655543333 4444
No 156
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.91 E-value=0.21 Score=32.15 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=48.3
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND 153 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G 153 (168)
..+.+...|. ++-++|..+.+.+- .|..++|++|.. ..+=.+.+.|.+.+.|..--. .||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555566 77777876666664 578899998753 356689999999999999997 88776653
No 157
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.89 E-value=0.014 Score=40.96 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=42.7
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhc-CCcE---eEEE-EeccCCCCC-ceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQ-FGTI---ESVN-MVTNKETGA-KRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~-~G~v---~~v~-i~~d~~tg~-~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
..+|.|++||+ +|++++.+.++. ++.- ..+. ...+..... .-.-|||.|.+.+++..-.. ++++.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 46899999999 999999987776 5554 3333 122222222 23579999999999888887 8887663
No 158
>KOG0533|consensus
Probab=95.86 E-value=0.0069 Score=44.42 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=43.0
Q ss_pred EEEEECCceeeeecccchhHhhhhccc--------------ceeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA--------------GVLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~--------------~~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
.+|+|.|||+.+++.+|+++|..++++ +.+.|.+.+...+.++++..++..
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ 148 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA 148 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc
Confidence 589999999999999999999999754 456777777778889998887743
No 159
>KOG2416|consensus
Probab=95.75 E-value=0.016 Score=47.22 Aligned_cols=75 Identities=12% Similarity=0.293 Sum_probs=58.2
Q ss_pred CCCCCCcEEEEeCCCC-CCHHHHHHHHhcC-CcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee---CCc
Q psy40 81 EANATVKKMFVGGLKD-QEEDDLREYFSQF-GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF---NDY 154 (168)
Q Consensus 81 ~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~-G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i---~G~ 154 (168)
.....++.|+|.||-. +|.-.|+.++..- |.|+.. ++ |+ -+..|||.|.+.++|.+.+. |++... +++
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3456778999999999 9999999999954 456555 32 22 25589999999999999998 888654 567
Q ss_pred ee-Eeeec
Q psy40 155 DV-VDKIV 161 (168)
Q Consensus 155 ~i-v~~a~ 161 (168)
.| +.|..
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 77 77764
No 160
>KOG2135|consensus
Probab=95.72 E-value=0.006 Score=48.22 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=57.2
Q ss_pred cEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 87 KKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 87 ~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
+.|-+.-.|+ -+.++|..+|.+||+|..|.+--. ---|.|+|.+..+|-.|-..++-.|++|.| |.|-+|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 4555556677 778899999999999999877322 226899999999998887778889999999 999877
No 161
>KOG0122|consensus
Probab=95.70 E-value=0.0072 Score=43.92 Aligned_cols=53 Identities=9% Similarity=-0.164 Sum_probs=40.7
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccccee---------------EEEecCCccchHHHHHhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGVL---------------EVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~---------------~v~~~~~~~~~~a~~~~~~~~ 60 (168)
..+||=|.||+.+++|..|.++|..||.+..+ ||.|..-..+.+|+...++..
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc
Confidence 45699999999999999999999999987554 455554456777776655443
No 162
>KOG0153|consensus
Probab=95.41 E-value=0.014 Score=44.41 Aligned_cols=51 Identities=14% Similarity=0.052 Sum_probs=39.3
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccceeEEEec---------CCccchHHHHHhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTT---------RPTINNKAMEEAQS 58 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~---------~~~~~~~a~~~~~~ 58 (168)
++.|||||+|...+.|..|+..|.+||++....++.. .-.++..|+.+..+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcc
Confidence 4679999999999999999999999999877655543 33456666655444
No 163
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.02 E-value=0.27 Score=33.08 Aligned_cols=71 Identities=24% Similarity=0.225 Sum_probs=49.9
Q ss_pred CCCcEEEEeCCCC--CCHHH---HHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-E
Q psy40 84 ATVKKMFVGGLKD--QEEDD---LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-V 157 (168)
Q Consensus 84 ~~~~~l~V~nlp~--~t~~~---L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v 157 (168)
.+-.||.|+=|.. -..+| +-..++.||+|.+|... | +.-|.|.|.+..+|=.|+..-+...-|..+ |
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 3457888886655 23334 44556789999999763 3 236999999999999999833345667777 7
Q ss_pred eeec
Q psy40 158 DKIV 161 (168)
Q Consensus 158 ~~a~ 161 (168)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7643
No 164
>KOG0116|consensus
Probab=94.50 E-value=0.022 Score=45.12 Aligned_cols=47 Identities=6% Similarity=-0.195 Sum_probs=38.8
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEA 56 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~ 56 (168)
.+|||+|||.+.++..|.+.|+.||++. .++|.|.+...+..++.+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 4799999999999999999999999763 2467777777777777664
No 165
>KOG4210|consensus
Probab=93.88 E-value=0.056 Score=40.84 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=60.4
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCC-ceeCCcee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAF-IEFNDYDV 156 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~-~~i~G~~i 156 (168)
...+.|++++.+ +.+.+...++..+|...............++|++++.|...+.+..|+.+.. ..+.++.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 468999999999 9999899999999988777776666678899999999999999999998555 45555555
No 166
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.42 E-value=0.37 Score=34.03 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=41.4
Q ss_pred CHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC--CceeCCcee-Eeeecc
Q psy40 98 EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA--FIEFNDYDV-VDKIVC 162 (168)
Q Consensus 98 t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~--~~~i~G~~i-v~~a~~ 162 (168)
....|+++|..|+.+......+. -+-..|.|.+.++|.+|.. ++ +..+.|..+ |-++.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999998777766543 2357899999999999998 88 788999999 887743
No 167
>KOG0130|consensus
Probab=92.43 E-value=0.12 Score=34.35 Aligned_cols=54 Identities=9% Similarity=-0.053 Sum_probs=41.2
Q ss_pred EEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhhhccC
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEEEVDM 64 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~~~~~ 64 (168)
-|||.++-...+|+.+...|..||++.+.++-.++-+ .++.|+...++......
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 7999999999999999999999999877666555554 56666666555554433
No 168
>KOG0151|consensus
Probab=92.24 E-value=0.13 Score=43.02 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=43.4
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCCc------------------cchHHHHHhhhhhhc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT------------------INNKAMEEAQSEEEV 62 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~------------------~~~~a~~~~~~~~~~ 62 (168)
..||||||++.+++..|-..|-.||++....+++-+.. .+.+|+..+++....
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 47999999999999999999999999877666654433 778888888877643
No 169
>KOG4574|consensus
Probab=92.21 E-value=0.1 Score=44.48 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=57.6
Q ss_pred EEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee--CCcee-Eeeecc
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF--NDYDV-VDKIVC 162 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i--~G~~i-v~~a~~ 162 (168)
+.++.|.+- .+-..|..++++||.|.+....+|-. .|.|.|.+.++|..|++ ++|.++ .|-+. |.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445556666 77778999999999999999888754 89999999999999998 888765 57778 888865
Q ss_pred c
Q psy40 163 K 163 (168)
Q Consensus 163 ~ 163 (168)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 170
>KOG2253|consensus
Probab=92.19 E-value=0.14 Score=42.34 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=56.7
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+..++||+|+.. +..+-++.+....|.|-...... |||..|........|+. +....++|..+ ++
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345667999999999 99999999999999987764331 99999999999999998 77777888877 44
No 171
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=91.58 E-value=0.19 Score=30.69 Aligned_cols=58 Identities=10% Similarity=-0.011 Sum_probs=38.0
Q ss_pred eEEEEECCceeeeecc----cchhHhhhhccc------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESK----CPSHEVRLAVEA------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~----~l~~~f~~~g~~------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.+.|||.|||.+.+-. .|+++++-||.. ..|.+.|..+..+.+|...+.+......++
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVSGGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEeCCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 3679999999776644 567888888864 468889999999999998888776554443
No 172
>KOG0804|consensus
Probab=90.83 E-value=1 Score=35.93 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=54.9
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND 153 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G 153 (168)
+..|+|-.+|. ++-.||-.+...+- .|.++++++|.. ..+=...|.|.+.++|..--+ +||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68899999999 99999999988775 688999999753 234478999999999999987 88776653
No 173
>KOG3152|consensus
Probab=89.87 E-value=0.48 Score=34.94 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=34.6
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeEEEecCCc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
+.-||+++||+.+.-..|++.+..+|+++-+++-.++.+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s 112 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDS 112 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhH
Confidence 457999999999999999999999999999988765555
No 174
>KOG2591|consensus
Probab=89.74 E-value=1.2 Score=36.45 Aligned_cols=67 Identities=10% Similarity=0.146 Sum_probs=52.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhc--CCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC--CceeCCcee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQ--FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA--FIEFNDYDV 156 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~--~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~--~~~i~G~~i 156 (168)
..+.|.+.++-||. +-+++++.+|.. +-.+.+|.+.-+. -=||+|++..+|.+|-. +. -..|.|++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 44567899999999 999999999975 5677788775543 25899999999999987 32 346788887
No 175
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=89.48 E-value=0.82 Score=26.72 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=46.1
Q ss_pred HHHHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeeccccc
Q psy40 100 DDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 100 ~~L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~~~~ 165 (168)
+++++.|...| +|..+.-+..+.++.+-..-||+.+...+...++.+ ..++|..+ |.....+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k~~~ 67 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRKRRE 67 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCCCCC
Confidence 46777888888 788988888776677777889998876654444332 45778888 888776654
No 176
>KOG2318|consensus
Probab=89.09 E-value=3.2 Score=34.33 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=59.0
Q ss_pred CCCCcEEEEeCCCC--CCHHHHHHHHhcC----CcEeEEEEeccC----------CCCC---------------------
Q psy40 83 NATVKKMFVGGLKD--QEEDDLREYFSQF----GTIESVNMVTNK----------ETGA--------------------- 125 (168)
Q Consensus 83 ~~~~~~l~V~nlp~--~t~~~L~~~F~~~----G~v~~v~i~~d~----------~tg~--------------------- 125 (168)
...+++|-|.|+.| +...+|..+|+.| |.|.+|.|-+.. -.|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999999 9999999999986 588888875531 1122
Q ss_pred ----------------ceeEEEEEEcCHHHHHHHHh-hCCceeC--Ccee-Eeee
Q psy40 126 ----------------KRGFAFIEFNDYDVVDKIRG-FAFIEFN--DYDV-VDKI 160 (168)
Q Consensus 126 ----------------~~g~afV~f~~~~~a~~ai~-~~~~~i~--G~~i-v~~a 160 (168)
..=||.|.|.+...|.+.-+ ++|..+. +..+ ++|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01289999999999999998 9998886 4444 5543
No 177
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.98 E-value=3.9 Score=24.13 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=33.3
Q ss_pred CCHHHHHHHHhcCC-----cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 97 QEEDDLREYFSQFG-----TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 97 ~t~~~L~~~F~~~G-----~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
++..+|..++..-+ .|-.+++..+ |+||+-... .|..+++ +++..+.|+++ |+.|
T Consensus 13 ~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 13 LTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp --HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 78888888888764 3557777432 899988764 6888887 89999999999 8865
No 178
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.90 E-value=3.7 Score=23.84 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=38.3
Q ss_pred CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 97 QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 97 ~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
++-++++..+..|+- .+|. .|+ | | =||.|.+..+|+++.. .++..+.+..+
T Consensus 12 ~~v~d~K~~Lr~y~~-~~I~--~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRW-DRIR--DDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred ccHHHHHHHHhcCCc-ceEE--ecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 788899999999963 3433 333 3 3 4799999999999998 77777666554
No 179
>KOG4208|consensus
Probab=87.80 E-value=0.48 Score=33.83 Aligned_cols=57 Identities=14% Similarity=-0.041 Sum_probs=48.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcc----------------cceeEEEecCCccchHHHHHhhhhhhccC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVE----------------AGVLEVVTTRPTINNKAMEEAQSEEEVDM 64 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~----------------~~~~~v~~~~~~~~~~a~~~~~~~~~~~~ 64 (168)
.-.-+||+++|..+-+.++...|.+++. .+.+||.|+++..+.-+...|++-+....
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 4457899999999999999999999953 36799999999999999999888875544
No 180
>KOG0226|consensus
Probab=86.34 E-value=0.35 Score=35.66 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=46.4
Q ss_pred EEEECCceeeeecccchhHhhhhcc---------------cceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVE---------------AGVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~---------------~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.||.|.|+-+++++.|...|++|.. .+..+|.|.+++...+||..+.+.......+
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred eeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 7999999999999999999999864 3567888888889999998888776554443
No 181
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=85.20 E-value=0.76 Score=29.33 Aligned_cols=49 Identities=14% Similarity=-0.055 Sum_probs=31.2
Q ss_pred EEEECCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhhh
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQSE 59 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~~ 59 (168)
.|.+.+++..++...|++.|..++.+. .++|.|..+..++.++.+....
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 467777899999999999999999764 4678888888888888776555
No 182
>KOG4483|consensus
Probab=84.53 E-value=5.4 Score=31.61 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=49.7
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCc-EeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV 156 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~-v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i 156 (168)
-.+.|=|.++|. .-.+||-..|+.|+. --+|.++-|. .+|-.|++...|..||.+....+.=|+|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 447889999999 777888889999974 4577777654 7999999999999999764333443443
No 183
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=83.71 E-value=1.9 Score=25.18 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=45.1
Q ss_pred HHHHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeeccccc
Q psy40 100 DDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 100 ~~L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~~~~ 165 (168)
.++++.|...| ++..+.-+..+.++.+..+=+|+-....+-... ++=..++|+++ |.....+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I--l~ik~Lg~~~V~VEr~~k~~~ 67 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI--LNIKTLGGQRVTVERPHKRKN 67 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce--EeehhhCCeeEEEecCcccCC
Confidence 35778888888 789999888887777777888887665433332 22245788898 888765554
No 184
>KOG0415|consensus
Probab=83.10 E-value=1.3 Score=34.45 Aligned_cols=57 Identities=12% Similarity=-0.101 Sum_probs=43.2
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCCc---------------cchHHHHHhhhhhhccCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT---------------INNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~---------------~~~~a~~~~~~~~~~~~~~ 66 (168)
+-|||--|.+-.+++.|.-.|+.||.+.+|.|+.+..+ +-.+|.-+|.+.+..+.++
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 47999999999999999999999999888776655554 5556666666666444443
No 185
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=82.06 E-value=5.4 Score=22.81 Aligned_cols=19 Identities=32% Similarity=0.700 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCcEeEEEEe
Q psy40 100 DDLREYFSQFGTIESVNMV 118 (168)
Q Consensus 100 ~~L~~~F~~~G~v~~v~i~ 118 (168)
++||++|++.|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999877653
No 186
>KOG4209|consensus
Probab=81.70 E-value=0.82 Score=33.53 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=30.8
Q ss_pred ceeEEEEECCceeeeecccchhHhhhhcccceeEEEe
Q psy40 7 IVVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVT 43 (168)
Q Consensus 7 ~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~ 43 (168)
+....+||||+++..+...+...|+.||.+....+..
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~ 135 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPK 135 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeec
Confidence 4667999999999999999999999999886444443
No 187
>KOG4849|consensus
Probab=81.01 E-value=2 Score=33.35 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=19.9
Q ss_pred EEEECCceeeeecccchhHhhhhc
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAV 34 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g 34 (168)
.+|||||-|+.++..|.+....-|
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G 105 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTG 105 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhh
Confidence 689999999999999887765544
No 188
>KOG4661|consensus
Probab=80.54 E-value=1.1 Score=36.99 Aligned_cols=39 Identities=8% Similarity=-0.158 Sum_probs=33.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeEEEecCCc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
-+.|||.+|+...--..|+.+|++||.+..|.|+...-+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRs 443 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARS 443 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCC
Confidence 358999999999999999999999999998888865443
No 189
>KOG2891|consensus
Probab=79.59 E-value=2.2 Score=32.02 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=28.8
Q ss_pred CCCcEEEEeCCCC-C------------CHHHHHHHHhcCCcEeEEEEec
Q psy40 84 ATVKKMFVGGLKD-Q------------EEDDLREYFSQFGTIESVNMVT 119 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~------------t~~~L~~~F~~~G~v~~v~i~~ 119 (168)
....|||+.+||- | +++-|+..|..||+|..|.|+-
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3457899998875 3 5678999999999999887753
No 190
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.03 E-value=6.1 Score=29.96 Aligned_cols=60 Identities=12% Similarity=0.315 Sum_probs=45.9
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCC-------CCCceeEEEEEEcCHHHHHH
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE-------TGAKRGFAFIEFNDYDVVDK 142 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~-------tg~~~g~afV~f~~~~~a~~ 142 (168)
...++.|...|+.. ++--.+-..|-+||.|++|+++.+.. .........+-|-+++.+..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 45567899999999 99999999999999999999998761 11123467788888776543
No 191
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.58 E-value=6.2 Score=25.68 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=29.6
Q ss_pred EEEEeCCCC----------CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcC-HHHHHHHHhh
Q psy40 88 KMFVGGLKD----------QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND-YDVVDKIRGF 146 (168)
Q Consensus 88 ~l~V~nlp~----------~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~-~~~a~~ai~~ 146 (168)
++.|-|+|. .+.+.|++.|+.|..+. ++...++ .-+.|++.|.|.+ -.-...|+.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 455666644 46678999999998764 5555554 2568999999965 3334445543
No 192
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=68.11 E-value=23 Score=21.18 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=39.5
Q ss_pred EEEEeCCCC-CCHHHHHHHHhc-CC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHH
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQ-FG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIR 144 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~-~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai 144 (168)
.-|+-.++. ++..+++..+++ || .|.+|+...-+ .+.. -|||++.....|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~K--KA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGEK--KAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCce--EEEEEECCCCcHHHHH
Confidence 466777889 999999999987 67 68888765543 2322 5999998877765543
No 193
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=66.94 E-value=26 Score=21.42 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=40.2
Q ss_pred EEEEeCCCC-CCHHHHHHHHhc-CC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHH
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQ-FG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIR 144 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~-~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai 144 (168)
.-|+--++. ++..++++.++. || .|.+|+...-+ .+. --|||++....+|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~--KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGE--KKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--EEEEEEeCCCCcHHHHH
Confidence 356666788 999999999987 67 68888866544 232 25999998887776654
No 194
>KOG4410|consensus
Probab=64.11 E-value=23 Score=26.92 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=35.5
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcE-eEEEEeccCCCCCceeEEEEEEcCHH
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTI-ESVNMVTNKETGAKRGFAFIEFNDYD 138 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v-~~v~i~~d~~tg~~~g~afV~f~~~~ 138 (168)
..-||++|||. +.-.||+..+.+-|-+ -++.+ .-+.|-||.+|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 35699999999 9999999999887643 34444 234678999997643
No 195
>KOG0115|consensus
Probab=62.09 E-value=4.3 Score=30.14 Aligned_cols=38 Identities=5% Similarity=-0.213 Sum_probs=33.9
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeEEEecCCc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
+.|||-||..-+..+.+.+.|+.||++..+.+..++..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~ 69 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG 69 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc
Confidence 58999999999999999999999999988887766654
No 196
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=58.87 E-value=25 Score=22.87 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=54.6
Q ss_pred ccchhHhhhhcccceeEEEecCCccchHHHHHhhhhhh-ccCCCCCCCCCCCcccCCCCCCCCCcEEEEeCCCC-CCHHH
Q psy40 24 KCPSHEVRLAVEAGVLEVVTTRPTINNKAMEEAQSEEE-VDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKD-QEEDD 101 (168)
Q Consensus 24 ~~l~~~f~~~g~~~~~~v~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~ 101 (168)
..|...|+.=|.+.+..-+..-| .+.++-..++..+ .+..+..........-.-.+....+..+| -|+ +|..+
T Consensus 16 nKLSDYfeSPGKI~svItvtqyp--dndal~~~~G~lE~vDg~i~IGs~q~~~sV~i~gTPsgnnv~F---~PYTlT~~e 90 (145)
T TIGR02542 16 NKLSDYFESPGKIQSVITVTQYP--DNDALLYVHGTLEQVDGNIRIGSGQTPASVRIQGTPSGNNVIF---PPYTLTYNE 90 (145)
T ss_pred chhhHHhcCCCceEEEEEEeccC--CchhhheeeeehhhccCcEEEccCCCcccEEEecCCCCCceec---CceeeeHHH
Confidence 56888898888877666555555 2333433343332 22222111111000000011111223333 366 99999
Q ss_pred HHHHHhc---CCcEeEEEEeccCCCCCceeEEEEEEcCHH
Q psy40 102 LREYFSQ---FGTIESVNMVTNKETGAKRGFAFIEFNDYD 138 (168)
Q Consensus 102 L~~~F~~---~G~v~~v~i~~d~~tg~~~g~afV~f~~~~ 138 (168)
|+++|.. |-.|.+-.+.+|--..-+-..+|..|....
T Consensus 91 ~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 91 LRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred HHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 9999975 545554444444221123348888886654
No 197
>KOG1995|consensus
Probab=55.89 E-value=8.6 Score=29.90 Aligned_cols=55 Identities=11% Similarity=-0.075 Sum_probs=42.6
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc-----------------------ceeEEEecCCccchHHHHHhhhhhhcc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA-----------------------GVLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~-----------------------~~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
..||||-.+|-.+++..+.+.|.+|+.+ +.+.|.++++..+..|+..........
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4699999999999999999999999843 456677777777777776655555433
No 198
>KOG0156|consensus
Probab=55.75 E-value=26 Score=28.79 Aligned_cols=58 Identities=14% Similarity=0.330 Sum_probs=45.3
Q ss_pred EEeCCCC-CC---HHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee
Q psy40 90 FVGGLKD-QE---EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV 156 (168)
Q Consensus 90 ~V~nlp~-~t---~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i 156 (168)
+||||+. -. ...+.++=.+||.|-.+++-. .-.|.-++.+.|+.++..++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 5899988 33 456777777899999888732 2358889999999999988888888873
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.13 E-value=8 Score=23.85 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=19.7
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHh
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFS 107 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~ 107 (168)
..++|-|.|||. .++++|++..+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 458999999999 99999997654
No 200
>KOG4008|consensus
Probab=46.48 E-value=21 Score=26.33 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=27.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEE
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVN 116 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~ 116 (168)
...++|+-|+|. .+++.|..+.++.|-+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 457899999999 99999999999988655543
No 201
>KOG1295|consensus
Probab=46.33 E-value=31 Score=27.27 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=43.7
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCc-EeEEEEeccCC--CCCceeEEEEEEcCHHHHHHHHh-hCCcee
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMVTNKE--TGAKRGFAFIEFNDYDVVDKIRG-FAFIEF 151 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~-v~~v~i~~d~~--tg~~~g~afV~f~~~~~a~~ai~-~~~~~i 151 (168)
...+-|.+||+ .++.+|.+....+-. +....+.+... .....+.+||.|.+.++...-.. ++++.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35788999999 999999888887642 33333332110 01125789999999998666555 666543
No 202
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=44.76 E-value=8.4 Score=30.52 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=49.7
Q ss_pred CCcEEEEeCCCC-CCHH--------HHHHHHhc--CCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh
Q psy40 85 TVKKMFVGGLKD-QEED--------DLREYFSQ--FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~--------~L~~~F~~--~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~ 145 (168)
..+.+|+.+.+. .+.+ ++...|.. .+.+..++.-++.....++|.-|++|.....+.+.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 346788888877 5444 89999998 6788888888887667788999999999999999984
No 203
>KOG2891|consensus
Probab=44.58 E-value=11 Score=28.47 Aligned_cols=44 Identities=9% Similarity=-0.036 Sum_probs=32.8
Q ss_pred cccceeEEEEECCceeee------------ecccchhHhhhhcccceeEEEecCCc
Q psy40 4 LSGIVVSTVYSGSGGWWF------------ESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 4 ~~~~~~~tlfvg~l~~~~------------~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
++|-..-||++.+||+.| .+..|+..|+.||++.++.+-..+|-
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdpl 199 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPL 199 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchh
Confidence 345566799999999765 24567888999999888877666653
No 204
>KOG2295|consensus
Probab=40.95 E-value=3.6 Score=33.91 Aligned_cols=72 Identities=6% Similarity=-0.006 Sum_probs=49.6
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
..+++++.|+++ ++-++|......+-.+...-+-.+........++.|+|.-.-+...|+. ++++.+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 457899999999 9999999999988666665543333222345688999977666666664 66555544333
No 205
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=40.29 E-value=55 Score=26.32 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=32.0
Q ss_pred CCCCCCCcEEEEeCCCC--CCHHHHHHHHhcC----CcEeEEEEec
Q psy40 80 PEANATVKKMFVGGLKD--QEEDDLREYFSQF----GTIESVNMVT 119 (168)
Q Consensus 80 ~~~~~~~~~l~V~nlp~--~t~~~L~~~F~~~----G~v~~v~i~~ 119 (168)
++...++.+|-|-|+.| +...+|-..|+.| |.+..|.|-+
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 34456778999999999 9999999999875 5677777654
No 206
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=39.87 E-value=19 Score=27.02 Aligned_cols=33 Identities=3% Similarity=-0.193 Sum_probs=26.0
Q ss_pred EEEECCceeeeecccchhHhhhhcccceeEEEe
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVT 43 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~ 43 (168)
...|+||||+++...+.+.++.......+.++.
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 678999999999999999998865544445544
No 207
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=35.65 E-value=62 Score=21.47 Aligned_cols=31 Identities=26% Similarity=0.156 Sum_probs=26.1
Q ss_pred EEEeCCCC--CCHHHHHHHHhcCCcEeEEEEec
Q psy40 89 MFVGGLKD--QEEDDLREYFSQFGTIESVNMVT 119 (168)
Q Consensus 89 l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~ 119 (168)
|-|.|||. .+++-|+.+-+..|++..+...+
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 55569999 99999999999999998886543
No 208
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=35.40 E-value=51 Score=18.99 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=23.8
Q ss_pred CHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEE
Q psy40 98 EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132 (168)
Q Consensus 98 t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV 132 (168)
-+.+|.++|-+-.+|..+.+...+. -.+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 3567888888888999998876653 34566766
No 209
>PHA01632 hypothetical protein
Probab=32.89 E-value=48 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=15.8
Q ss_pred EEEeCCCC-CCHHHHHHHHhc
Q psy40 89 MFVGGLKD-QEEDDLREYFSQ 108 (168)
Q Consensus 89 l~V~nlp~-~t~~~L~~~F~~ 108 (168)
+.|..+|. .|+++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 33457899 999999988765
No 210
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.60 E-value=60 Score=18.85 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=19.0
Q ss_pred EEEEEEcCHHHHHHHHh-hCCceeCC
Q psy40 129 FAFIEFNDYDVVDKIRG-FAFIEFND 153 (168)
Q Consensus 129 ~afV~f~~~~~a~~ai~-~~~~~i~G 153 (168)
+.++.|.+...|.+|-+ +....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 68999999999999987 55444433
No 211
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.89 E-value=46 Score=16.78 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=9.4
Q ss_pred CCHHHHHHHHhcCC
Q psy40 97 QEEDDLREYFSQFG 110 (168)
Q Consensus 97 ~t~~~L~~~F~~~G 110 (168)
++++.|++.|.+.+
T Consensus 21 td~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 21 TDEDQLKEVFNRIK 34 (36)
T ss_dssp --HHHHHHHHHCS-
T ss_pred CCHHHHHHHHHHhc
Confidence 78889999998754
No 212
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=29.49 E-value=30 Score=21.28 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=23.2
Q ss_pred EEEECCceeeeecccchhHhhhhcccceeEEEecCCc
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
-||||+++-.+-+......-+.|..-+.+.+.+.++.
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~ 63 (87)
T TIGR01873 27 GVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNT 63 (87)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCC
Confidence 6899988766655444444444255577777766554
No 213
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=29.38 E-value=25 Score=20.47 Aligned_cols=22 Identities=18% Similarity=0.582 Sum_probs=16.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHH
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYF 106 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F 106 (168)
.++.+|||++|. +-.+.=..++
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred cCceEEECCCChHHHHcCcchHH
Confidence 458999999999 7766544443
No 214
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=28.68 E-value=1.5e+02 Score=18.32 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=25.8
Q ss_pred EEEEeCCCC-CCHHHHHHHHhc-CC-cEeEEEEecc
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQ-FG-TIESVNMVTN 120 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~-~G-~v~~v~i~~d 120 (168)
..|+-.++. ++..++++.++. || .|.+|+...-
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 456677889 999999999987 77 6778875543
No 215
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.57 E-value=35 Score=21.48 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=23.1
Q ss_pred EEEECCceeeeecccchhHhhhhcccceeEEEecCCc
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
-||||+++-.+-+. |++...+...-+.+.+++.++.
T Consensus 29 GVyVg~~S~rVRd~-lW~~v~~~~~~G~avmv~~~~~ 64 (97)
T PRK11558 29 GVYVGDVSRRIREM-IWQQVTQLAEEGNVVMAWATNT 64 (97)
T ss_pred CcEEcCCCHHHHHH-HHHHHHHhCCCCcEEEEEcCCC
Confidence 68999886655544 4444444445588888875554
No 216
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.87 E-value=47 Score=18.40 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=8.5
Q ss_pred ceeEEEEEEcC
Q psy40 126 KRGFAFIEFND 136 (168)
Q Consensus 126 ~~g~afV~f~~ 136 (168)
++|||||.-.+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 47899999886
No 217
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=26.79 E-value=60 Score=16.22 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.9
Q ss_pred CCHHHHHHHHhcCCcE
Q psy40 97 QEEDDLREYFSQFGTI 112 (168)
Q Consensus 97 ~t~~~L~~~F~~~G~v 112 (168)
++.++|++.+..+|-.
T Consensus 4 Ws~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCHHHHHHHHHHcCCC
Confidence 7889999999999864
No 218
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.56 E-value=2.1e+02 Score=19.46 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=36.9
Q ss_pred EEEEeCCCC-CCHHHHHHHHhc-CC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHH
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQ-FG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~-~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~ 141 (168)
+-|+--++. .+..++++.++. |+ .|..|+.+.-+. |.. -|||.+....+|.
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~ai 136 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDAL 136 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHH
Confidence 466777888 999999999987 76 688887555332 333 5899997766543
No 219
>KOG4365|consensus
Probab=26.47 E-value=12 Score=30.11 Aligned_cols=69 Identities=6% Similarity=-0.185 Sum_probs=48.3
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
.+.|+..+|- .++.++.-.|..||-|..+..-+.-..|...-.+|++-.. .++..+|. +....+.|-.+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~ 74 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQD 74 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhh
Confidence 3456778899 9999999999999999888766555445556677777654 34555665 55555555555
No 220
>KOG4019|consensus
Probab=26.33 E-value=60 Score=23.00 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=45.8
Q ss_pred cEEEEeCCCC--CCHHH----HHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCc-ee-E
Q psy40 87 KKMFVGGLKD--QEEDD----LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDY-DV-V 157 (168)
Q Consensus 87 ~~l~V~nlp~--~t~~~----L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~-~i-v 157 (168)
.++.+.+++. .+... ...+|.+|-+....++.+ +.++..|.|.+.+.|..|.- .+...+.|. .+ .
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 5677888877 33333 344555555544444443 24567789999999999986 888889888 55 5
Q ss_pred eeecc
Q psy40 158 DKIVC 162 (168)
Q Consensus 158 ~~a~~ 162 (168)
=++.+
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 55544
No 221
>KOG1855|consensus
Probab=25.78 E-value=39 Score=27.23 Aligned_cols=35 Identities=6% Similarity=-0.127 Sum_probs=30.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeEEEe
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVT 43 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~ 43 (168)
-.||.+-|||.+-.-+-|.+.|..+|.+-.+++..
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIck 265 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICK 265 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecC
Confidence 36999999999999999999999999987776653
No 222
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=25.23 E-value=81 Score=25.76 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=55.0
Q ss_pred ceeEEEEECCceeeeecccchhHhhhhcccceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcccCCCCCCCCC
Q psy40 7 IVVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATV 86 (168)
Q Consensus 7 ~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (168)
-+++.+|=|+-|+. ...+.-.+.+|-..++.++..+.|+..+.|+....-.. ..+|....
T Consensus 35 g~ICDmfEGhAPyr--PRYilPDY~kfl~qGs~fLeL~pp~DldeAln~L~IlY---~HVPSVT~--------------- 94 (487)
T PF11230_consen 35 GIICDMFEGHAPYR--PRYILPDYAKFLKQGSEFLELEPPKDLDEALNNLLILY---HHVPSVTS--------------- 94 (487)
T ss_pred CccccccCCCCCCC--CceeCccHHHHHhccchhcccCCcccHHHHHHhhhHHh---hcCCccCC---------------
Confidence 45678888888754 34555667777888899999999999999885533322 22322222
Q ss_pred cEEEEeCC-----CC-C--CHHHHHHHHhcC
Q psy40 87 KKMFVGGL-----KD-Q--EEDDLREYFSQF 109 (168)
Q Consensus 87 ~~l~V~nl-----p~-~--t~~~L~~~F~~~ 109 (168)
--||+|+| |+ - +++++......|
T Consensus 95 ~PVylG~LD~lL~Pfv~~l~eee~~~klk~F 125 (487)
T PF11230_consen 95 FPVYLGQLDRLLEPFVQGLDEEEAYKKLKLF 125 (487)
T ss_pred ccceeccHhhhhcccccCCCHHHHHHHHHHH
Confidence 34999987 66 3 788766655444
No 223
>KOG4213|consensus
Probab=25.07 E-value=1.3e+02 Score=21.35 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=37.7
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCC--CceeEEEEEEcCHHHHHHHHhhC
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETG--AKRGFAFIEFNDYDVVDKIRGFA 147 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg--~~~g~afV~f~~~~~a~~ai~~~ 147 (168)
.+++|.. |. ...++|.++-+ |.+..+..-+ +..+ ..+|--||+|.+.++|.+.++.+
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~-~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRR-HGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccc-cCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 3566665 33 44445555545 7787776533 2233 45789999999999999988643
No 224
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=24.95 E-value=1.7e+02 Score=17.89 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=29.1
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~ 135 (168)
.-+|||++.. +-+.--..+-+.-+.-.-+-+-++. ...||+|-+.-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 4599999999 8777666665544443333333332 25789988873
No 225
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.34 E-value=1.8e+02 Score=18.17 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=18.4
Q ss_pred cEeEEEEeccCCCCCceeEEEEEEcC
Q psy40 111 TIESVNMVTNKETGAKRGFAFIEFND 136 (168)
Q Consensus 111 ~v~~v~i~~d~~tg~~~g~afV~f~~ 136 (168)
+|.+|++-+-...|+-+++|=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 35666655444457889999999987
No 226
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.09 E-value=75 Score=18.33 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy40 95 KDQEEDDLREYFSQFGT 111 (168)
Q Consensus 95 p~~t~~~L~~~F~~~G~ 111 (168)
|+++|+.|+..+.+.|.
T Consensus 30 Ppine~mir~M~~QMG~ 46 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGR 46 (64)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 33899999999999885
No 227
>PRK00523 hypothetical protein; Provisional
Probab=23.73 E-value=75 Score=18.77 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy40 95 KDQEEDDLREYFSQFGT 111 (168)
Q Consensus 95 p~~t~~~L~~~F~~~G~ 111 (168)
|+++|+.|+..|.+.|.
T Consensus 38 Ppine~mir~M~~QMGq 54 (72)
T PRK00523 38 PPITENMIRAMYMQMGR 54 (72)
T ss_pred cCCCHHHHHHHHHHhCC
Confidence 33899999999999885
No 228
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.80 E-value=1.9e+02 Score=17.58 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=19.1
Q ss_pred cEeEEEEeccCCCCCceeEEEEEEcC
Q psy40 111 TIESVNMVTNKETGAKRGFAFIEFND 136 (168)
Q Consensus 111 ~v~~v~i~~d~~tg~~~g~afV~f~~ 136 (168)
.|.+|++-+-...|+-+|+|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 35667665555558889999999987
No 229
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=22.69 E-value=1.3e+02 Score=15.51 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=17.5
Q ss_pred CHHHHHHHHhhCCceeCCcee
Q psy40 136 DYDVVDKIRGFAFIEFNDYDV 156 (168)
Q Consensus 136 ~~~~a~~ai~~~~~~i~G~~i 156 (168)
+...|.+.|......++|+.+
T Consensus 15 sr~~a~~~I~~g~V~VNg~~v 35 (48)
T PF01479_consen 15 SRSEARRLIKQGRVKVNGKVV 35 (48)
T ss_dssp SHHHHHHHHHTTTEEETTEEE
T ss_pred CHHHHHHhcCCCEEEECCEEE
Confidence 577899999888888999875
No 230
>CHL00030 rpl23 ribosomal protein L23
Probab=22.62 E-value=2e+02 Score=17.85 Aligned_cols=33 Identities=12% Similarity=0.325 Sum_probs=26.0
Q ss_pred EEEEeCCCC-CCHHHHHHHHhc-CC-cEeEEEEecc
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQ-FG-TIESVNMVTN 120 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~-~G-~v~~v~i~~d 120 (168)
.-|+--++. ++..++++.++. || .|..|+...-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 466677888 999999999987 67 6888876554
No 231
>PRK01844 hypothetical protein; Provisional
Probab=22.24 E-value=85 Score=18.57 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy40 95 KDQEEDDLREYFSQFGT 111 (168)
Q Consensus 95 p~~t~~~L~~~F~~~G~ 111 (168)
|+++|+.|+..|.+.|.
T Consensus 37 Ppine~mir~Mm~QMGq 53 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQ 53 (72)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 44899999999999885
No 232
>PRK15464 cold shock-like protein CspH; Provisional
Probab=21.43 E-value=49 Score=19.33 Aligned_cols=11 Identities=45% Similarity=0.513 Sum_probs=8.3
Q ss_pred ceeEEEEEEcC
Q psy40 126 KRGFAFIEFND 136 (168)
Q Consensus 126 ~~g~afV~f~~ 136 (168)
.+|||||+=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 37999997554
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.38 E-value=1.3e+02 Score=22.39 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.4
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHh
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFS 107 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~ 107 (168)
..-++|+|||+ .+..-|.+++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 35789999999 99999999987
No 234
>PRK15463 cold shock-like protein CspF; Provisional
Probab=20.21 E-value=56 Score=19.03 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=8.3
Q ss_pred ceeEEEEEEcC
Q psy40 126 KRGFAFIEFND 136 (168)
Q Consensus 126 ~~g~afV~f~~ 136 (168)
.+|||||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK15463 15 KSGKGLITPSD 25 (70)
T ss_pred CCceEEEecCC
Confidence 37999997654
Done!