Query psy40
Match_columns 168
No_of_seqs 132 out of 1650
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 22:48:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy40.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/40hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 7.2E-32 2.5E-36 190.5 11.0 158 8-166 12-186 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 9.1E-31 3.1E-35 180.0 12.1 149 10-162 1-166 (166)
3 4f02_A Polyadenylate-binding p 100.0 1.8E-31 6.2E-36 191.4 8.8 151 9-165 15-183 (213)
4 2cjk_A Nuclear polyadenylated 100.0 2.7E-31 9.1E-36 183.2 7.5 147 10-164 4-167 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.7E-29 5.7E-34 174.2 11.9 145 10-160 4-168 (168)
6 2yh0_A Splicing factor U2AF 65 100.0 1.9E-29 6.5E-34 178.3 11.9 156 9-165 4-196 (198)
7 2g4b_A Splicing factor U2AF 65 100.0 1.1E-29 3.9E-34 175.8 10.5 144 10-160 5-171 (172)
8 2qfj_A FBP-interacting repress 100.0 1.5E-29 5.1E-34 181.1 10.4 157 9-165 28-207 (216)
9 1fxl_A Paraneoplastic encephal 100.0 3.5E-29 1.2E-33 172.2 11.4 145 10-160 3-167 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 7.9E-29 2.7E-33 171.8 12.6 150 9-161 3-175 (175)
11 1fje_B Nucleolin RBD12, protei 100.0 1.9E-28 6.6E-33 170.1 9.7 146 9-164 13-175 (175)
12 2ghp_A U4/U6 snRNA-associated 99.9 8.5E-28 2.9E-32 179.5 10.8 155 10-164 118-292 (292)
13 3tyt_A Heterogeneous nuclear r 99.9 1.8E-27 6.2E-32 169.6 9.7 150 9-160 4-204 (205)
14 3smz_A Protein raver-1, ribonu 99.9 7.4E-27 2.5E-31 173.8 11.8 143 10-164 23-176 (284)
15 3sde_A Paraspeckle component 1 99.9 5.8E-27 2E-31 172.7 9.7 143 10-165 23-181 (261)
16 2adc_A Polypyrimidine tract-bi 99.9 3E-26 1E-30 165.8 12.7 150 9-163 34-228 (229)
17 3smz_A Protein raver-1, ribonu 99.9 1.9E-26 6.4E-31 171.6 11.9 152 10-165 96-266 (284)
18 1qm9_A Polypyrimidine tract-bi 99.9 2.1E-26 7.3E-31 162.9 11.4 149 10-163 4-197 (198)
19 4fxv_A ELAV-like protein 1; RN 99.9 8.2E-26 2.8E-30 143.3 11.3 79 84-162 17-98 (99)
20 3pgw_A U1-A; protein-RNA compl 99.9 2.6E-25 8.9E-30 165.3 12.2 73 84-161 205-281 (282)
21 2ghp_A U4/U6 snRNA-associated 99.9 4.3E-26 1.5E-30 170.2 7.6 142 9-165 41-199 (292)
22 2lxi_A RNA-binding protein 10; 99.9 8.7E-26 3E-30 141.1 6.8 82 86-167 1-87 (91)
23 3s8s_A Histone-lysine N-methyl 99.9 2.1E-24 7.3E-29 139.3 10.7 81 84-164 4-87 (110)
24 2kn4_A Immunoglobulin G-bindin 99.9 3.6E-24 1.2E-28 146.6 11.3 130 36-165 13-152 (158)
25 3md1_A Nuclear and cytoplasmic 99.9 1.1E-23 3.6E-28 129.2 11.2 79 87-165 2-83 (83)
26 3bs9_A Nucleolysin TIA-1 isofo 99.9 8.6E-24 2.9E-28 130.8 10.8 81 84-164 4-87 (87)
27 2dgs_A DAZ-associated protein 99.9 2E-23 6.7E-28 132.3 12.1 84 83-166 7-92 (99)
28 2lkz_A RNA-binding protein 5; 99.9 1.8E-24 6.2E-29 135.9 6.0 76 87-162 10-94 (95)
29 2do4_A Squamous cell carcinoma 99.9 5.4E-23 1.9E-27 130.4 12.9 82 83-165 14-98 (100)
30 1whw_A Hypothetical protein ri 99.9 3.1E-23 1.1E-27 131.3 11.6 83 84-166 6-91 (99)
31 2jrs_A RNA-binding protein 39; 99.9 2.9E-23 1E-27 133.6 11.1 83 83-165 23-108 (108)
32 1p27_B RNA-binding protein 8A; 99.9 3.9E-23 1.3E-27 132.4 11.5 84 82-165 19-105 (106)
33 1x4h_A RNA-binding protein 28; 99.9 5.5E-23 1.9E-27 132.8 12.2 84 83-166 12-104 (111)
34 1x5u_A Splicing factor 3B subu 99.9 4.7E-23 1.6E-27 131.8 11.7 84 83-166 12-98 (105)
35 2x1f_A MRNA 3'-END-processing 99.9 3.3E-23 1.1E-27 130.6 10.8 81 85-165 1-84 (96)
36 2dnz_A Probable RNA-binding pr 99.9 5.1E-23 1.8E-27 129.3 11.6 82 85-166 4-88 (95)
37 3s7r_A Heterogeneous nuclear r 99.9 4.9E-23 1.7E-27 127.4 11.1 78 83-160 8-87 (87)
38 2cq0_A Eukaryotic translation 99.9 6.1E-23 2.1E-27 130.9 11.3 83 83-165 12-97 (103)
39 4f25_A Polyadenylate-binding p 99.9 3.8E-23 1.3E-27 134.5 10.3 78 86-165 5-85 (115)
40 2cpz_A CUG triplet repeat RNA- 99.9 7.8E-23 2.7E-27 132.9 11.8 84 83-166 22-108 (115)
41 2cph_A RNA binding motif prote 99.9 8E-23 2.7E-27 131.1 11.7 84 83-166 12-100 (107)
42 3p5t_L Cleavage and polyadenyl 99.9 7.3E-24 2.5E-28 132.1 6.6 79 87-165 2-85 (90)
43 1oo0_B CG8781-PA, drosophila Y 99.9 7.1E-23 2.4E-27 132.1 10.9 83 83-165 23-108 (110)
44 2dgo_A Cytotoxic granule-assoc 99.9 1.5E-22 5.2E-27 131.5 12.5 83 83-165 12-97 (115)
45 2dng_A Eukaryotic translation 99.9 1.6E-22 5.6E-27 128.9 12.4 82 83-165 12-95 (103)
46 1x5t_A Splicing factor 3B subu 99.9 4.4E-23 1.5E-27 129.8 9.5 81 85-165 4-88 (96)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.9E-23 2E-27 126.4 9.8 78 84-161 5-85 (85)
48 1s79_A Lupus LA protein; RRM, 99.9 4.1E-23 1.4E-27 131.7 9.2 77 85-162 10-88 (103)
49 2cqc_A Arginine/serine-rich sp 99.9 1.7E-22 5.6E-27 126.9 11.7 80 83-162 12-94 (95)
50 2cqb_A Peptidyl-prolyl CIS-tra 99.9 5.2E-23 1.8E-27 130.9 9.5 83 83-165 9-94 (102)
51 2rs2_A Musashi-1, RNA-binding 99.9 7.7E-23 2.6E-27 131.8 10.4 84 83-166 22-107 (109)
52 2la6_A RNA-binding protein FUS 99.9 1.2E-22 4.2E-27 128.6 11.1 80 82-161 9-99 (99)
53 2cqg_A TDP-43, TAR DNA-binding 99.9 2.8E-22 9.5E-27 127.8 12.8 83 83-166 12-96 (103)
54 1x5s_A Cold-inducible RNA-bind 99.9 7.3E-23 2.5E-27 130.3 10.0 83 83-165 9-94 (102)
55 2j76_E EIF-4B, EIF4B, eukaryot 99.9 2.3E-23 7.8E-28 132.3 7.3 83 82-165 15-100 (100)
56 2dnm_A SRP46 splicing factor; 99.9 8.2E-23 2.8E-27 130.3 9.8 83 83-165 10-95 (103)
57 1wi8_A EIF-4B, eukaryotic tran 99.9 1.4E-22 4.9E-27 129.4 10.9 82 84-166 13-97 (104)
58 2dh8_A DAZ-associated protein 99.9 9.2E-23 3.2E-27 130.5 9.8 83 83-165 13-97 (105)
59 2e5h_A Zinc finger CCHC-type a 99.9 1.7E-22 5.9E-27 126.7 10.8 79 83-161 13-94 (94)
60 2dgp_A Bruno-like 4, RNA bindi 99.9 1.2E-22 4E-27 130.2 10.2 83 83-165 10-98 (106)
61 2div_A TRNA selenocysteine ass 99.9 1.7E-22 5.8E-27 127.9 10.7 82 83-164 6-95 (99)
62 2dnh_A Bruno-like 5, RNA bindi 99.9 4.4E-22 1.5E-26 127.3 12.5 82 84-166 13-100 (105)
63 2d9p_A Polyadenylate-binding p 99.9 2.8E-22 9.7E-27 127.8 11.4 81 84-166 13-96 (103)
64 2dhg_A TRNA selenocysteine ass 99.9 2.3E-22 7.9E-27 128.4 10.9 81 84-165 7-92 (104)
65 2cpf_A RNA binding motif prote 99.9 1.4E-22 4.9E-27 128.0 9.8 81 85-165 4-90 (98)
66 3ucg_A Polyadenylate-binding p 99.9 2E-22 6.8E-27 125.1 10.3 78 86-163 6-85 (89)
67 2kxn_B Transformer-2 protein h 99.9 1.6E-22 5.5E-27 134.0 10.3 82 83-164 43-127 (129)
68 1x4b_A Heterogeneous nuclear r 99.9 1.4E-22 4.6E-27 132.0 9.7 83 84-166 25-109 (116)
69 2cpe_A RNA-binding protein EWS 99.9 2E-22 6.9E-27 130.5 10.3 84 83-166 12-106 (113)
70 2cqd_A RNA-binding region cont 99.9 7E-22 2.4E-26 128.6 12.8 80 83-163 14-96 (116)
71 3n9u_C Cleavage and polyadenyl 99.9 1.7E-22 5.9E-27 137.9 10.3 80 85-164 54-138 (156)
72 1sjq_A Polypyrimidine tract-bi 99.9 1.7E-22 5.7E-27 128.5 9.4 77 83-165 13-94 (105)
73 2mss_A Protein (musashi1); RNA 99.9 7.3E-23 2.5E-27 123.2 7.4 73 88-160 1-75 (75)
74 2m2b_A RNA-binding protein 10; 99.9 6.8E-23 2.3E-27 136.2 7.6 83 82-165 19-110 (131)
75 2khc_A Testis-specific RNP-typ 99.9 5.1E-22 1.8E-26 129.6 11.6 80 82-161 36-118 (118)
76 4a8x_A RNA-binding protein wit 99.9 2.2E-22 7.7E-27 124.5 9.3 81 85-165 3-87 (88)
77 1p1t_A Cleavage stimulation fa 99.9 5.9E-23 2E-27 131.1 6.8 81 85-165 7-90 (104)
78 3ns6_A Eukaryotic translation 99.9 6.9E-23 2.4E-27 130.0 6.8 81 85-165 5-95 (100)
79 2cq4_A RNA binding motif prote 99.9 1.3E-22 4.5E-27 131.7 8.1 82 84-165 23-106 (114)
80 2cq3_A RNA-binding protein 9; 99.9 1.7E-21 5.8E-26 124.1 13.1 82 82-165 11-95 (103)
81 3ex7_B RNA-binding protein 8A; 99.9 3.6E-22 1.2E-26 131.8 10.2 84 82-165 18-104 (126)
82 2fy1_A RNA-binding motif prote 99.9 4.4E-22 1.5E-26 129.6 10.5 81 84-165 5-88 (116)
83 2dis_A Unnamed protein product 99.9 4.2E-22 1.4E-26 128.2 10.2 81 85-165 7-94 (109)
84 1u6f_A Tcubp1, RNA-binding pro 99.9 9.4E-22 3.2E-26 131.8 12.3 83 83-165 39-124 (139)
85 2dgv_A HnRNP M, heterogeneous 99.9 7.5E-22 2.6E-26 123.2 11.0 81 83-165 5-88 (92)
86 2dgw_A Probable RNA-binding pr 99.9 1.1E-21 3.6E-26 122.4 11.4 80 84-165 8-89 (91)
87 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.8E-21 6.1E-26 124.0 12.6 81 83-165 12-95 (103)
88 2dgx_A KIAA0430 protein; RRM d 99.9 6.8E-22 2.3E-26 124.5 10.4 79 84-165 7-92 (96)
89 2ywk_A Putative RNA-binding pr 99.9 6.5E-22 2.2E-26 124.2 10.3 79 83-162 13-94 (95)
90 2lea_A Serine/arginine-rich sp 99.9 2.2E-22 7.5E-27 134.4 7.8 83 83-165 44-129 (135)
91 2cpi_A CCR4-NOT transcription 99.9 6.2E-22 2.1E-26 127.9 9.7 82 85-166 14-104 (111)
92 3ulh_A THO complex subunit 4; 99.9 1.6E-21 5.3E-26 125.1 11.5 78 83-161 26-106 (107)
93 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.6E-21 5.5E-26 133.2 12.2 81 84-164 37-120 (156)
94 2cpy_A RNA-binding protein 12; 99.9 4E-22 1.4E-26 129.4 8.7 81 83-164 12-95 (114)
95 1wg5_A Heterogeneous nuclear r 99.9 1.6E-21 5.4E-26 124.6 11.1 80 84-164 13-95 (104)
96 2cqp_A RNA-binding protein 12; 99.9 4.7E-22 1.6E-26 125.6 8.5 81 84-164 13-96 (98)
97 1x4e_A RNA binding motif, sing 99.9 1.9E-22 6.5E-27 124.2 6.3 78 84-161 3-83 (85)
98 2ki2_A SS-DNA binding protein 99.9 1.3E-22 4.6E-27 126.2 5.5 78 87-165 2-82 (90)
99 2nlw_A Eukaryotic translation 99.9 9.1E-22 3.1E-26 125.9 9.5 80 84-165 13-102 (105)
100 2i2y_A Fusion protein consists 99.9 8.6E-22 2.9E-26 133.7 9.9 122 37-164 14-149 (150)
101 1x5o_A RNA binding motif, sing 99.9 2.7E-21 9.2E-26 125.4 11.8 80 83-163 22-112 (114)
102 1iqt_A AUF1, heterogeneous nuc 99.9 1.8E-22 6.1E-27 121.4 5.8 73 88-160 1-75 (75)
103 1uaw_A Mouse-musashi-1; RNP-ty 99.9 2.5E-22 8.4E-27 121.4 6.0 73 87-160 1-76 (77)
104 2do0_A HnRNP M, heterogeneous 99.9 4.3E-21 1.5E-25 124.4 12.2 80 83-163 12-94 (114)
105 3r27_A HnRNP L, heterogeneous 99.9 1.5E-21 5.2E-26 122.9 9.6 76 83-164 18-98 (100)
106 1wez_A HnRNP H', FTP-3, hetero 99.9 8.8E-22 3E-26 125.3 8.7 79 84-164 13-93 (102)
107 1rk8_A CG8781-PA, CG8781-PA pr 99.9 2.1E-21 7E-26 133.9 11.2 84 82-165 68-154 (165)
108 1x4a_A Splicing factor, argini 99.9 5E-21 1.7E-25 123.2 12.3 81 82-165 18-101 (109)
109 1fj7_A Nucleolin RBD1, protein 99.9 1.2E-22 4.2E-27 129.0 4.6 83 83-166 14-98 (101)
110 2kt5_A RNA and export factor-b 99.9 7.6E-21 2.6E-25 125.1 13.3 82 82-164 31-115 (124)
111 2xs2_A Deleted in azoospermia- 99.9 4.5E-22 1.5E-26 126.6 7.2 81 84-166 7-89 (102)
112 2err_A Ataxin-2-binding protei 99.9 1.1E-21 3.9E-26 126.3 8.9 82 81-164 24-108 (109)
113 2jwn_A Embryonic polyadenylate 99.9 1.8E-21 6E-26 128.1 9.9 80 85-164 35-116 (124)
114 2db1_A Heterogeneous nuclear r 99.9 1.7E-21 5.7E-26 127.2 9.7 80 84-164 15-99 (118)
115 2ek1_A RNA-binding protein 12; 99.9 6.1E-22 2.1E-26 124.4 7.3 78 85-162 14-94 (95)
116 2a3j_A U1 small nuclear ribonu 99.9 2.4E-21 8.2E-26 127.8 9.9 79 84-165 27-112 (127)
117 2hgl_A HNRPF protein, heteroge 99.9 8.5E-22 2.9E-26 131.4 7.8 80 84-164 42-126 (136)
118 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 5.8E-21 2E-25 128.0 11.9 79 82-160 59-140 (140)
119 1wel_A RNA-binding protein 12; 99.9 7.1E-22 2.4E-26 130.0 7.3 82 83-164 22-105 (124)
120 2dnn_A RNA-binding protein 12; 99.9 1.3E-21 4.4E-26 125.8 8.3 78 85-164 15-94 (109)
121 2cq1_A PTB-like protein L; RRM 99.9 5.6E-21 1.9E-25 121.2 11.1 75 84-164 13-92 (101)
122 2ad9_A Polypyrimidine tract-bi 99.9 3.4E-21 1.2E-25 125.3 9.7 77 83-165 28-109 (119)
123 2fc9_A NCL protein; structure 99.9 6.4E-21 2.2E-25 121.0 10.3 79 83-165 12-93 (101)
124 2lmi_A GRSF-1, G-rich sequence 99.8 9.5E-22 3.3E-26 126.2 6.2 80 84-164 9-93 (107)
125 2fc8_A NCL protein; structure 99.8 9.1E-21 3.1E-25 120.5 10.6 81 83-166 12-95 (102)
126 2krb_A Eukaryotic translation 99.8 2.6E-21 9E-26 118.1 7.6 70 87-158 2-81 (81)
127 1wex_A Hypothetical protein (r 99.8 7E-21 2.4E-25 121.4 9.8 76 83-164 12-92 (104)
128 2cpx_A Hypothetical protein FL 99.8 1.6E-21 5.4E-26 126.7 6.8 83 83-165 22-107 (115)
129 3q2s_C Cleavage and polyadenyl 99.8 3.1E-21 1.1E-25 139.5 9.1 79 85-163 67-150 (229)
130 2wbr_A GW182, gawky, LD47780P; 99.8 7.7E-21 2.6E-25 116.0 9.3 72 84-161 5-79 (89)
131 2hgm_A HNRPF protein, heteroge 99.8 3.4E-21 1.2E-25 126.7 8.1 79 84-164 40-122 (126)
132 2dha_A FLJ20171 protein; RRM d 99.8 3.3E-21 1.1E-25 126.4 7.4 79 85-164 22-106 (123)
133 1why_A Hypothetical protein ri 99.8 3.3E-20 1.1E-24 116.9 11.7 77 84-166 15-96 (97)
134 2dnq_A RNA-binding protein 4B; 99.8 2.8E-20 9.6E-25 115.6 10.7 74 84-165 6-82 (90)
135 4f02_A Polyadenylate-binding p 99.8 1.9E-20 6.3E-25 134.0 11.2 81 84-164 13-96 (213)
136 1x4c_A Splicing factor, argini 99.8 3.5E-20 1.2E-24 119.1 11.1 75 84-165 13-95 (108)
137 1x4d_A Matrin 3; structural ge 99.8 8.4E-21 2.9E-25 120.4 8.1 77 84-166 13-95 (102)
138 2lcw_A RNA-binding protein FUS 99.7 1.6E-22 5.4E-27 131.7 0.0 83 84-166 5-98 (116)
139 3lqv_A PRE-mRNA branch site pr 99.8 1.8E-20 6.2E-25 121.6 9.7 78 84-164 6-86 (115)
140 2cpj_A Non-POU domain-containi 99.8 2E-20 6.8E-25 118.4 9.7 78 83-166 12-92 (99)
141 1nu4_A U1A RNA binding domain; 99.8 5.9E-21 2E-25 120.3 7.1 79 84-165 6-91 (97)
142 1x4g_A Nucleolysin TIAR; struc 99.8 2.6E-20 9E-25 119.8 10.3 77 84-166 23-102 (109)
143 1fjc_A Nucleolin RBD2, protein 99.8 1.4E-20 4.7E-25 118.4 8.5 78 83-165 13-93 (96)
144 2la4_A Nuclear and cytoplasmic 99.8 1.9E-20 6.5E-25 118.8 9.0 73 85-163 26-101 (101)
145 3d2w_A TAR DNA-binding protein 99.8 1.8E-20 6.2E-25 116.3 8.7 77 83-165 8-86 (89)
146 2ytc_A PRE-mRNA-splicing facto 99.8 5.6E-20 1.9E-24 113.0 10.8 73 83-161 9-85 (85)
147 1l3k_A Heterogeneous nuclear r 99.8 3.5E-20 1.2E-24 130.4 10.9 82 83-164 10-93 (196)
148 2e5j_A Methenyltetrahydrofolat 99.8 4.4E-20 1.5E-24 116.4 10.2 77 84-165 17-96 (97)
149 3pgw_S U1-70K; protein-RNA com 99.8 1.5E-20 5.1E-25 147.3 9.7 82 84-165 100-184 (437)
150 1fxl_A Paraneoplastic encephal 99.8 6.7E-20 2.3E-24 125.6 11.5 79 86-164 2-83 (167)
151 2jvr_A Nucleolar protein 3; RN 99.8 2.1E-20 7.3E-25 120.4 8.3 76 85-164 27-106 (111)
152 2hgn_A Heterogeneous nuclear r 99.8 4.3E-21 1.5E-25 128.4 5.0 79 84-164 44-124 (139)
153 2dgu_A Heterogeneous nuclear r 99.8 7.1E-20 2.4E-24 116.6 10.5 75 83-165 8-85 (103)
154 2jvo_A Nucleolar protein 3; nu 99.8 3.7E-20 1.3E-24 118.9 9.1 75 83-165 28-105 (108)
155 2dgt_A RNA-binding protein 30; 99.8 1.2E-19 4.2E-24 113.2 11.2 75 83-165 7-84 (92)
156 2cpd_A Apobec-1 stimulating pr 99.8 1.8E-19 6.1E-24 113.9 12.0 76 82-165 11-91 (99)
157 1b7f_A Protein (SXL-lethal pro 99.8 4.3E-20 1.5E-24 126.8 9.8 80 85-164 2-84 (168)
158 2hvz_A Splicing factor, argini 99.8 2.3E-20 8E-25 118.4 7.5 73 87-164 1-76 (101)
159 2f3j_A RNA and export factor b 99.8 7.8E-20 2.7E-24 127.2 10.6 82 83-165 85-169 (177)
160 2e5g_A U6 snRNA-specific termi 99.8 1.8E-19 6E-24 112.9 10.8 76 85-165 7-84 (94)
161 2dnp_A RNA-binding protein 14; 99.8 1.5E-19 5.3E-24 112.3 10.2 75 83-165 6-83 (90)
162 2cqh_A IGF-II mRNA-binding pro 99.8 6.1E-20 2.1E-24 114.8 7.2 76 84-166 6-86 (93)
163 3egn_A RNA-binding protein 40; 99.8 1.6E-20 5.5E-25 126.4 4.8 78 84-164 43-131 (143)
164 1whx_A Hypothetical protein ri 99.8 1E-19 3.5E-24 117.4 8.4 73 85-163 9-84 (111)
165 2e44_A Insulin-like growth fac 99.8 1.9E-19 6.4E-24 113.1 9.3 76 85-164 14-93 (96)
166 2xnq_A Nuclear polyadenylated 99.8 4.6E-19 1.6E-23 111.7 10.6 74 83-164 19-96 (97)
167 1x4f_A Matrin 3; structural ge 99.8 1.6E-19 5.3E-24 116.2 8.4 78 83-166 22-105 (112)
168 2diu_A KIAA0430 protein; struc 99.8 3.2E-19 1.1E-23 109.9 9.3 72 85-166 7-87 (96)
169 2j8a_A Histone-lysine N-methyl 99.8 1.3E-19 4.5E-24 117.7 7.7 75 87-161 3-94 (136)
170 2cq2_A Hypothetical protein LO 99.8 1.5E-19 5.2E-24 116.4 7.9 75 84-164 23-107 (114)
171 1wf0_A TDP-43, TAR DNA-binding 99.8 1.2E-19 4.3E-24 112.2 6.7 76 85-166 4-81 (88)
172 2dnl_A Cytoplasmic polyadenyla 99.8 2.8E-19 9.5E-24 115.9 8.3 75 84-161 6-86 (114)
173 1sjr_A Polypyrimidine tract-bi 99.8 6.6E-19 2.2E-23 120.0 10.3 76 85-164 45-125 (164)
174 2cjk_A Nuclear polyadenylated 99.8 2E-19 6.7E-24 123.5 7.8 79 85-164 2-82 (167)
175 1x5p_A Negative elongation fac 99.8 2E-18 7E-23 108.6 11.8 77 83-166 12-90 (97)
176 1wg1_A KIAA1579 protein, homol 99.8 3.7E-19 1.3E-23 110.1 7.7 73 85-164 4-79 (88)
177 3md3_A Nuclear and cytoplasmic 99.8 7E-19 2.4E-23 120.4 9.8 77 87-164 1-80 (166)
178 2voo_A Lupus LA protein; RNA-b 99.8 1E-18 3.4E-23 123.2 10.7 77 85-162 108-186 (193)
179 2kvi_A Nuclear polyadenylated 99.8 7.3E-19 2.5E-23 110.5 9.0 74 84-165 8-85 (96)
180 1wf1_A RNA-binding protein RAL 99.8 1.9E-18 6.6E-23 111.2 10.0 72 84-163 25-100 (110)
181 2qfj_A FBP-interacting repress 99.8 1.4E-18 4.7E-23 123.9 10.2 80 85-164 27-109 (216)
182 2pe8_A Splicing factor 45; RRM 99.8 2.8E-18 9.7E-23 109.5 10.3 79 84-162 6-93 (105)
183 3zzy_A Polypyrimidine tract-bi 99.8 2.4E-18 8.3E-23 113.2 10.2 75 85-164 27-107 (130)
184 2hzc_A Splicing factor U2AF 65 99.8 1.7E-18 5.9E-23 106.7 9.0 70 84-159 4-86 (87)
185 3beg_B Splicing factor, argini 99.8 7.5E-19 2.6E-23 114.1 7.6 72 85-163 15-94 (115)
186 2e5i_A Heterogeneous nuclear r 99.8 7.6E-18 2.6E-22 110.3 12.2 72 87-164 26-103 (124)
187 3tyt_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 122.9 10.0 73 85-162 3-79 (205)
188 3nmr_A Cugbp ELAV-like family 99.8 3.4E-18 1.2E-22 117.9 10.2 80 85-164 2-89 (175)
189 2bz2_A Negative elongation fac 99.7 5.4E-18 1.8E-22 110.9 8.8 76 84-166 37-114 (121)
190 3u1l_A PRE-mRNA-splicing facto 99.7 4.3E-18 1.5E-22 123.0 8.9 77 83-165 131-231 (240)
191 3pgw_A U1-A; protein-RNA compl 99.7 1.6E-17 5.4E-22 123.2 11.4 80 83-165 6-92 (282)
192 1fje_B Nucleolin RBD12, protei 99.7 1.7E-18 5.9E-23 119.8 3.5 82 83-165 10-93 (175)
193 2dit_A HIV TAT specific factor 99.7 7E-17 2.4E-21 104.2 10.2 78 84-165 13-104 (112)
194 3v4m_A Splicing factor U2AF 65 99.7 7.5E-17 2.6E-21 102.8 8.2 78 85-162 4-96 (105)
195 2adc_A Polypyrimidine tract-bi 99.7 1.2E-16 4.1E-21 115.3 9.7 76 83-163 31-110 (229)
196 3ue2_A Poly(U)-binding-splicin 99.7 1.4E-16 4.8E-21 103.5 8.6 78 85-162 19-108 (118)
197 1jmt_A Splicing factor U2AF 35 99.7 4.1E-17 1.4E-21 103.9 5.3 69 91-160 20-103 (104)
198 3sde_A Paraspeckle component 1 99.7 4.3E-16 1.5E-20 114.5 10.0 75 84-164 20-97 (261)
199 2g4b_A Splicing factor U2AF 65 99.7 4.8E-16 1.6E-20 106.9 8.9 74 85-164 3-89 (172)
200 1qm9_A Polypyrimidine tract-bi 99.6 2.7E-16 9.1E-21 110.8 7.2 73 86-163 3-79 (198)
201 2yh0_A Splicing factor U2AF 65 99.6 6.2E-16 2.1E-20 108.7 8.9 73 85-163 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.3E-14 4.5E-19 91.5 11.5 64 96-165 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.6 5.4E-15 1.8E-19 112.1 8.8 73 83-161 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 4.7E-14 1.6E-18 91.0 8.9 74 85-162 6-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 6E-13 2E-17 81.2 8.4 72 84-163 5-86 (91)
206 4f25_A Polyadenylate-binding p 99.4 5.7E-14 2E-18 90.9 1.0 92 10-101 6-113 (115)
207 1owx_A Lupus LA protein, SS-B, 99.3 6.6E-12 2.2E-16 81.3 6.6 72 84-161 16-94 (121)
208 1ufw_A Synaptojanin 2; RNP dom 99.3 7E-12 2.4E-16 76.9 5.4 70 84-161 13-93 (95)
209 3dxb_A Thioredoxin N-terminall 99.2 2.7E-11 9.3E-16 86.8 8.7 66 97-162 141-212 (222)
210 2hvz_A Splicing factor, argini 99.1 3.1E-11 1.1E-15 75.9 2.2 86 10-95 1-100 (101)
211 3lqv_A PRE-mRNA branch site pr 98.9 7.1E-11 2.4E-15 76.0 -0.2 89 9-111 8-109 (115)
212 2lkz_A RNA-binding protein 5; 98.7 3.5E-09 1.2E-13 65.8 2.0 53 7-59 7-76 (95)
213 1sjq_A Polypyrimidine tract-bi 98.7 1.1E-08 3.9E-13 64.6 3.6 51 8-58 15-74 (105)
214 2dnq_A RNA-binding protein 4B; 98.7 1.3E-08 4.4E-13 62.4 3.7 63 7-69 6-75 (90)
215 2l9w_A U4/U6 snRNA-associated- 98.7 2.8E-07 9.7E-12 57.7 8.9 67 86-158 21-95 (117)
216 2dhg_A TRNA selenocysteine ass 98.6 3.2E-08 1.1E-12 62.2 4.7 68 7-74 7-90 (104)
217 2dnp_A RNA-binding protein 14; 98.6 7.9E-09 2.7E-13 63.4 1.6 62 5-66 5-73 (90)
218 2e5j_A Methenyltetrahydrofolat 98.6 8.4E-09 2.9E-13 64.2 1.8 55 9-63 19-83 (97)
219 4fxv_A ELAV-like protein 1; RN 98.6 6.6E-09 2.3E-13 65.1 1.1 52 10-61 20-86 (99)
220 1x4c_A Splicing factor, argini 98.6 9.9E-09 3.4E-13 65.2 1.7 55 9-63 15-77 (108)
221 3beg_B Splicing factor, argini 98.6 2E-08 6.8E-13 64.5 3.1 57 9-65 16-80 (115)
222 2cqh_A IGF-II mRNA-binding pro 98.6 7.1E-09 2.4E-13 64.0 0.9 55 8-62 7-71 (93)
223 1whw_A Hypothetical protein ri 98.6 1.3E-08 4.3E-13 63.5 2.0 59 8-66 7-80 (99)
224 2e5g_A U6 snRNA-specific termi 98.6 2.1E-08 7.2E-13 62.0 2.9 62 9-71 8-79 (94)
225 1x4g_A Nucleolysin TIAR; struc 98.6 2.2E-08 7.6E-13 63.6 3.0 59 8-66 24-91 (109)
226 2div_A TRNA selenocysteine ass 98.6 1.6E-08 5.5E-13 63.0 2.1 56 5-60 5-76 (99)
227 2m2b_A RNA-binding protein 10; 98.6 5.6E-08 1.9E-12 63.8 4.6 61 8-69 22-103 (131)
228 3p5t_L Cleavage and polyadenyl 98.6 2.4E-08 8.3E-13 61.2 2.5 60 10-69 2-78 (90)
229 2cpx_A Hypothetical protein FL 98.6 1.7E-08 5.7E-13 64.7 1.8 57 10-66 26-97 (115)
230 1wf1_A RNA-binding protein RAL 98.6 4.3E-08 1.5E-12 62.3 3.6 59 10-68 28-94 (110)
231 2kvi_A Nuclear polyadenylated 98.6 1.5E-08 5.2E-13 62.9 1.4 59 8-66 9-75 (96)
232 2dh8_A DAZ-associated protein 98.6 2.8E-08 9.6E-13 62.6 2.6 66 8-74 15-95 (105)
233 2dgp_A Bruno-like 4, RNA bindi 98.6 4.1E-08 1.4E-12 61.9 3.3 54 8-61 12-80 (106)
234 2cpz_A CUG triplet repeat RNA- 98.5 2.5E-08 8.5E-13 63.9 2.3 63 9-71 25-102 (115)
235 2cpe_A RNA-binding protein EWS 98.5 2.6E-08 9E-13 63.6 2.4 59 8-66 14-95 (113)
236 2dgt_A RNA-binding protein 30; 98.5 2.3E-08 8E-13 61.5 2.0 59 8-66 9-74 (92)
237 2la4_A Nuclear and cytoplasmic 98.5 3.1E-08 1.1E-12 62.0 2.6 58 9-66 27-93 (101)
238 2diu_A KIAA0430 protein; struc 98.5 7.4E-08 2.5E-12 59.2 4.1 65 10-74 10-84 (96)
239 2fy1_A RNA-binding motif prote 98.5 2.8E-08 9.6E-13 64.0 2.3 58 9-66 7-78 (116)
240 2cpj_A Non-POU domain-containi 98.5 3E-08 1E-12 61.8 2.4 57 10-66 16-81 (99)
241 2dgv_A HnRNP M, heterogeneous 98.5 4.8E-08 1.6E-12 60.0 3.3 59 9-67 8-79 (92)
242 2d9p_A Polyadenylate-binding p 98.5 2.1E-08 7.2E-13 63.0 1.6 60 8-67 14-86 (103)
243 1wex_A Hypothetical protein (r 98.5 4.3E-08 1.5E-12 61.9 3.0 49 10-58 16-73 (104)
244 2cpf_A RNA binding motif prote 98.5 2.3E-08 7.8E-13 62.2 1.7 58 9-66 5-80 (98)
245 1x4a_A Splicing factor, argini 98.5 3E-08 1E-12 62.9 2.2 59 9-67 22-92 (109)
246 2cq3_A RNA-binding protein 9; 98.5 3.3E-08 1.1E-12 62.1 2.2 59 8-66 14-85 (103)
247 2ki2_A SS-DNA binding protein 98.5 1.4E-08 4.8E-13 62.2 0.5 53 9-62 1-68 (90)
248 2xnq_A Nuclear polyadenylated 98.5 2.5E-08 8.7E-13 62.1 1.5 53 9-61 22-82 (97)
249 2cqi_A Nucleolysin TIAR; RNA r 98.5 2.6E-08 8.8E-13 62.6 1.5 55 8-62 14-81 (103)
250 2dnm_A SRP46 splicing factor; 98.5 5.6E-08 1.9E-12 61.0 3.1 58 9-66 13-85 (103)
251 2dgs_A DAZ-associated protein 98.5 3.8E-08 1.3E-12 61.3 2.2 54 7-61 8-76 (99)
252 2jrs_A RNA-binding protein 39; 98.5 4.8E-08 1.6E-12 62.0 2.7 55 8-62 25-94 (108)
253 2dnz_A Probable RNA-binding pr 98.5 4.7E-08 1.6E-12 60.4 2.5 58 9-66 5-77 (95)
254 1x4d_A Matrin 3; structural ge 98.5 3.3E-08 1.1E-12 62.2 1.8 51 9-59 15-75 (102)
255 2dnh_A Bruno-like 5, RNA bindi 98.5 3.9E-08 1.3E-12 61.9 1.9 55 8-62 14-82 (105)
256 2krb_A Eukaryotic translation 98.5 3.5E-08 1.2E-12 59.2 1.7 51 10-60 2-71 (81)
257 2ad9_A Polypyrimidine tract-bi 98.5 4.5E-08 1.5E-12 63.2 2.2 49 10-58 32-89 (119)
258 1x5s_A Cold-inducible RNA-bind 98.5 3.4E-08 1.2E-12 61.9 1.5 56 8-63 11-81 (102)
259 2dgx_A KIAA0430 protein; RRM d 98.5 3.7E-08 1.3E-12 61.2 1.6 57 7-63 7-79 (96)
260 2lxi_A RNA-binding protein 10; 98.5 2.3E-08 7.8E-13 61.6 0.6 48 10-57 2-65 (91)
261 2jvo_A Nucleolar protein 3; nu 98.5 3.2E-08 1.1E-12 62.9 1.3 54 9-62 31-91 (108)
262 1x5u_A Splicing factor 3B subu 98.5 5.3E-08 1.8E-12 61.3 2.3 57 10-66 16-87 (105)
263 2dgu_A Heterogeneous nuclear r 98.5 3.8E-08 1.3E-12 61.8 1.4 54 9-62 11-71 (103)
264 2cph_A RNA binding motif prote 98.5 6E-08 2E-12 61.2 2.3 59 8-66 14-89 (107)
265 3r27_A HnRNP L, heterogeneous 98.5 5.9E-08 2E-12 60.7 2.2 50 10-59 22-80 (100)
266 1why_A Hypothetical protein ri 98.5 4.1E-08 1.4E-12 61.0 1.4 53 10-62 18-79 (97)
267 2do4_A Squamous cell carcinoma 98.4 2.6E-08 8.9E-13 62.2 0.3 54 8-61 16-83 (100)
268 1x5t_A Splicing factor 3B subu 98.4 4.5E-08 1.5E-12 60.6 1.4 55 9-63 5-75 (96)
269 2err_A Ataxin-2-binding protei 98.4 4.4E-08 1.5E-12 62.3 1.3 54 8-61 28-94 (109)
270 1fj7_A Nucleolin RBD1, protein 98.4 5.6E-08 1.9E-12 60.8 1.8 57 9-66 17-87 (101)
271 2jvr_A Nucleolar protein 3; RN 98.4 3.5E-08 1.2E-12 63.1 0.9 53 10-62 29-93 (111)
272 1whx_A Hypothetical protein ri 98.4 8.9E-08 3E-12 61.1 2.8 55 8-62 9-72 (111)
273 1x4h_A RNA-binding protein 28; 98.4 5.4E-08 1.9E-12 61.8 1.8 49 9-57 15-78 (111)
274 2cpd_A Apobec-1 stimulating pr 98.4 5.2E-08 1.8E-12 60.7 1.6 58 9-66 15-81 (99)
275 1x4e_A RNA binding motif, sing 98.4 8.9E-08 3.1E-12 57.9 2.6 55 9-63 5-74 (85)
276 2cq1_A PTB-like protein L; RRM 98.4 6.6E-08 2.3E-12 60.7 2.0 49 9-57 15-72 (101)
277 2dgo_A Cytotoxic granule-assoc 98.4 8.6E-08 2.9E-12 61.3 2.6 55 8-62 14-83 (115)
278 3bs9_A Nucleolysin TIA-1 isofo 98.4 3.3E-08 1.1E-12 60.0 0.6 52 9-60 6-72 (87)
279 2cq0_A Eukaryotic translation 98.4 4E-08 1.4E-12 61.7 0.9 57 8-64 14-85 (103)
280 2j76_E EIF-4B, EIF4B, eukaryot 98.4 1E-07 3.5E-12 59.6 2.7 53 8-62 18-86 (100)
281 2nlw_A Eukaryotic translation 98.4 7.5E-08 2.6E-12 60.7 2.1 52 9-60 15-85 (105)
282 2cpi_A CCR4-NOT transcription 98.4 2.5E-08 8.5E-13 63.6 -0.2 57 10-66 16-93 (111)
283 1p27_B RNA-binding protein 8A; 98.4 5.3E-08 1.8E-12 61.4 1.3 52 9-60 23-89 (106)
284 2ywk_A Putative RNA-binding pr 98.4 6.8E-08 2.3E-12 59.6 1.7 51 10-60 17-81 (95)
285 2e44_A Insulin-like growth fac 98.4 4.8E-08 1.7E-12 60.5 1.0 53 10-62 16-80 (96)
286 1x4f_A Matrin 3; structural ge 98.4 7.8E-08 2.7E-12 61.4 1.9 49 10-58 26-84 (112)
287 2cqb_A Peptidyl-prolyl CIS-tra 98.4 3.8E-08 1.3E-12 61.6 0.4 55 8-62 11-80 (102)
288 3s8s_A Histone-lysine N-methyl 98.4 9.9E-08 3.4E-12 60.8 2.3 54 9-62 6-74 (110)
289 2ek1_A RNA-binding protein 12; 98.4 6.2E-08 2.1E-12 59.8 1.3 53 9-61 15-82 (95)
290 2dhx_A Poly (ADP-ribose) polym 98.4 7.6E-06 2.6E-10 50.7 10.6 72 86-165 8-86 (104)
291 2cqp_A RNA-binding protein 12; 98.4 5E-08 1.7E-12 60.6 0.8 54 8-61 14-82 (98)
292 2x1f_A MRNA 3'-END-processing 98.4 5.7E-08 2E-12 60.2 0.9 54 10-63 3-71 (96)
293 3ns6_A Eukaryotic translation 98.4 9.4E-08 3.2E-12 59.8 1.9 52 10-61 7-79 (100)
294 3md1_A Nuclear and cytoplasmic 98.4 1.1E-07 3.6E-12 57.2 1.9 52 10-61 2-68 (83)
295 4a8x_A RNA-binding protein wit 98.4 5.5E-08 1.9E-12 59.1 0.6 54 9-62 4-73 (88)
296 2a3j_A U1 small nuclear ribonu 98.4 6.5E-08 2.2E-12 63.3 1.0 56 10-65 30-101 (127)
297 2fc9_A NCL protein; structure 98.4 3.5E-08 1.2E-12 61.7 -0.4 54 9-62 15-79 (101)
298 2wbr_A GW182, gawky, LD47780P; 98.4 8.8E-08 3E-12 58.2 1.4 52 9-60 7-67 (89)
299 2i2y_A Fusion protein consists 98.4 1.1E-07 3.9E-12 63.7 2.1 53 9-61 73-135 (150)
300 2lcw_A RNA-binding protein FUS 97.7 4.3E-08 1.5E-12 62.9 0.0 66 9-74 7-95 (116)
301 1oo0_B CG8781-PA, drosophila Y 98.4 6.2E-08 2.1E-12 61.5 0.6 53 9-61 26-93 (110)
302 3mdf_A Peptidyl-prolyl CIS-tra 98.4 1.3E-07 4.5E-12 57.0 1.9 52 9-60 7-73 (85)
303 1s79_A Lupus LA protein; RRM, 98.4 7.3E-08 2.5E-12 60.7 0.7 46 9-54 11-70 (103)
304 2dis_A Unnamed protein product 98.3 1.1E-07 3.9E-12 60.1 1.4 49 9-57 8-73 (109)
305 1uaw_A Mouse-musashi-1; RNP-ty 98.3 1.4E-07 4.9E-12 55.8 1.7 48 10-57 1-63 (77)
306 1x4b_A Heterogeneous nuclear r 98.3 7.6E-08 2.6E-12 61.7 0.2 46 10-55 28-88 (116)
307 2cqc_A Arginine/serine-rich sp 98.3 8.1E-08 2.8E-12 59.2 0.2 51 10-60 16-81 (95)
308 2la6_A RNA-binding protein FUS 98.3 3.1E-07 1E-11 57.2 2.8 53 8-60 12-87 (99)
309 1nu4_A U1A RNA binding domain; 98.3 1.2E-07 4.1E-12 58.7 0.8 53 9-61 8-76 (97)
310 1p1t_A Cleavage stimulation fa 98.3 7.6E-08 2.6E-12 60.4 -0.1 52 9-60 8-74 (104)
311 3ucg_A Polyadenylate-binding p 98.3 1.1E-07 3.8E-12 57.9 0.6 50 10-60 7-71 (89)
312 2ytc_A PRE-mRNA-splicing facto 98.3 1E-07 3.6E-12 57.5 0.5 49 8-56 11-68 (85)
313 3ex7_B RNA-binding protein 8A; 98.3 1.5E-07 5.1E-12 61.2 1.3 57 9-65 22-93 (126)
314 2mss_A Protein (musashi1); RNA 98.3 9.4E-08 3.2E-12 56.4 0.3 43 11-53 1-58 (75)
315 2lmi_A GRSF-1, G-rich sequence 98.3 1.1E-07 3.9E-12 60.1 0.6 47 8-54 10-73 (107)
316 1iqt_A AUF1, heterogeneous nuc 98.3 2.7E-07 9.4E-12 54.3 2.2 44 11-54 1-59 (75)
317 1fjc_A Nucleolin RBD2, protein 98.3 7.5E-08 2.6E-12 59.6 -0.3 53 9-61 16-78 (96)
318 3egn_A RNA-binding protein 40; 98.3 1E-07 3.5E-12 63.4 0.3 58 9-66 45-122 (143)
319 2cqd_A RNA-binding region cont 98.3 1.3E-07 4.5E-12 60.6 0.8 51 8-58 16-81 (116)
320 3d2w_A TAR DNA-binding protein 98.3 1.9E-07 6.6E-12 57.1 1.4 42 9-50 11-62 (89)
321 2kxn_B Transformer-2 protein h 98.3 1.4E-07 5E-12 61.7 0.9 55 10-64 47-116 (129)
322 2xs2_A Deleted in azoospermia- 98.3 3.7E-07 1.3E-11 57.0 2.7 47 8-54 8-68 (102)
323 2do0_A HnRNP M, heterogeneous 98.3 2.7E-07 9.2E-12 58.8 2.1 54 9-62 15-82 (114)
324 1wi8_A EIF-4B, eukaryotic tran 98.3 2.3E-07 7.7E-12 58.3 1.6 53 8-62 14-82 (104)
325 1u6f_A Tcubp1, RNA-binding pro 98.3 1.4E-07 4.8E-12 62.4 0.6 56 8-63 41-111 (139)
326 2cqg_A TDP-43, TAR DNA-binding 98.3 2.2E-07 7.5E-12 58.2 1.5 47 8-54 14-75 (103)
327 2cq2_A Hypothetical protein LO 98.3 3.2E-07 1.1E-11 58.7 2.2 51 10-60 26-87 (114)
328 2kt5_A RNA and export factor-b 98.3 3E-07 1E-11 59.6 2.1 52 10-61 36-101 (124)
329 2fc8_A NCL protein; structure 98.3 1.3E-07 4.3E-12 59.2 0.1 64 8-71 14-89 (102)
330 1wg5_A Heterogeneous nuclear r 98.3 1.6E-07 5.6E-12 59.1 0.6 47 9-55 15-76 (104)
331 2rs2_A Musashi-1, RNA-binding 98.2 8E-08 2.7E-12 61.1 -1.0 49 8-56 24-87 (109)
332 2khc_A Testis-specific RNP-typ 98.2 3.3E-07 1.1E-11 58.8 1.9 53 8-60 39-106 (118)
333 2kn4_A Immunoglobulin G-bindin 98.2 1.9E-07 6.5E-12 63.0 0.8 53 9-61 70-137 (158)
334 2dnl_A Cytoplasmic polyadenyla 98.2 1.8E-07 6.1E-12 59.9 0.4 49 8-56 7-72 (114)
335 1sjr_A Polypyrimidine tract-bi 98.2 5.8E-07 2E-11 61.1 3.0 55 8-62 45-110 (164)
336 2e5h_A Zinc finger CCHC-type a 98.2 2.1E-07 7.1E-12 57.3 0.7 51 10-60 17-82 (94)
337 1h2v_Z 20 kDa nuclear CAP bind 98.2 2.2E-07 7.6E-12 62.7 0.8 54 9-62 39-107 (156)
338 2e5i_A Heterogeneous nuclear r 98.2 6.4E-07 2.2E-11 58.2 3.0 54 9-62 25-88 (124)
339 3ulh_A THO complex subunit 4; 98.2 4.8E-07 1.6E-11 57.0 2.1 52 9-60 29-94 (107)
340 2lea_A Serine/arginine-rich sp 98.2 2.1E-07 7.2E-12 61.4 0.3 53 9-61 47-114 (135)
341 1wwh_A Nucleoporin 35, nucleop 98.2 1.3E-05 4.4E-10 51.2 8.6 72 85-162 23-96 (119)
342 2hzc_A Splicing factor U2AF 65 98.2 3.1E-07 1.1E-11 55.6 1.0 51 9-60 6-76 (87)
343 2cq4_A RNA binding motif prote 98.2 7.1E-07 2.4E-11 56.9 2.7 50 10-60 26-90 (114)
344 3s7r_A Heterogeneous nuclear r 98.2 6.3E-07 2.2E-11 54.3 2.2 47 8-54 10-71 (87)
345 1rk8_A CG8781-PA, CG8781-PA pr 98.2 6.2E-07 2.1E-11 61.1 2.3 52 10-61 73-139 (165)
346 3n9u_C Cleavage and polyadenyl 98.2 6.2E-07 2.1E-11 60.6 2.2 51 10-60 56-123 (156)
347 1wel_A RNA-binding protein 12; 98.2 3.3E-07 1.1E-11 59.5 0.8 45 10-54 26-85 (124)
348 2f3j_A RNA and export factor b 98.2 5.3E-07 1.8E-11 62.3 1.9 51 10-60 89-153 (177)
349 2db1_A Heterogeneous nuclear r 98.2 3.8E-07 1.3E-11 58.7 0.8 46 9-54 17-79 (118)
350 1x5o_A RNA binding motif, sing 98.2 1E-06 3.5E-11 56.1 2.8 52 9-60 25-90 (114)
351 1wg1_A KIAA1579 protein, homol 98.1 4.1E-07 1.4E-11 55.4 0.8 51 10-61 6-65 (88)
352 3q2s_C Cleavage and polyadenyl 98.1 6.1E-07 2.1E-11 64.4 1.7 52 9-60 68-136 (229)
353 2dha_A FLJ20171 protein; RRM d 98.1 5.5E-07 1.9E-11 58.5 1.2 47 9-55 23-87 (123)
354 2cpy_A RNA-binding protein 12; 98.1 4.1E-07 1.4E-11 58.2 0.6 47 9-55 15-76 (114)
355 3zzy_A Polypyrimidine tract-bi 98.1 1.2E-06 4.2E-11 57.3 2.8 56 8-63 27-93 (130)
356 2hgl_A HNRPF protein, heteroge 98.1 3.6E-07 1.2E-11 60.4 -0.1 45 10-54 45-106 (136)
357 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.1 1E-06 3.4E-11 58.1 1.9 52 8-59 62-128 (140)
358 2hgm_A HNRPF protein, heteroge 98.1 1.2E-06 4E-11 57.1 2.0 46 10-55 43-103 (126)
359 2dng_A Eukaryotic translation 98.1 1.1E-06 3.9E-11 54.9 1.8 52 8-61 14-80 (103)
360 2jwn_A Embryonic polyadenylate 98.1 5.2E-07 1.8E-11 58.4 0.1 50 10-60 37-101 (124)
361 1wez_A HnRNP H', FTP-3, hetero 98.1 4.1E-07 1.4E-11 57.1 -0.4 46 8-53 14-72 (102)
362 3u1l_A PRE-mRNA-splicing facto 98.1 8.7E-07 3E-11 63.9 1.1 53 9-61 134-204 (240)
363 2hgn_A Heterogeneous nuclear r 98.0 4.2E-07 1.4E-11 60.3 -0.8 43 10-53 47-103 (139)
364 2dgw_A Probable RNA-binding pr 98.0 4.1E-07 1.4E-11 55.6 -0.9 51 8-60 9-73 (91)
365 1x5p_A Negative elongation fac 98.0 2E-06 6.8E-11 53.2 1.9 52 9-62 15-75 (97)
366 3pgw_S U1-70K; protein-RNA com 98.0 1.2E-06 4E-11 68.7 0.9 54 9-62 102-170 (437)
367 1wf0_A TDP-43, TAR DNA-binding 97.9 1.6E-06 5.4E-11 52.6 0.4 33 9-41 5-37 (88)
368 2dnn_A RNA-binding protein 12; 97.9 3.3E-06 1.1E-10 53.6 1.8 43 10-53 17-73 (109)
369 1uw4_A UPF3X; nonsense mediate 97.9 0.00013 4.3E-09 44.6 8.0 66 87-152 2-71 (91)
370 2bz2_A Negative elongation fac 97.8 4.7E-06 1.6E-10 53.8 1.5 53 9-63 39-100 (121)
371 2j8a_A Histone-lysine N-methyl 97.8 9E-06 3.1E-10 52.9 2.2 38 10-47 3-44 (136)
372 1wey_A Calcipressin 1; structu 97.7 9.6E-05 3.3E-09 46.0 6.3 71 86-162 5-83 (104)
373 2voo_A Lupus LA protein; RNA-b 97.7 8.3E-06 2.8E-10 57.0 1.2 46 10-55 110-169 (193)
374 3tht_A Alkylated DNA repair pr 97.7 1.2E-05 4.2E-10 60.9 1.7 52 10-61 19-81 (345)
375 1whv_A Poly(A)-specific ribonu 97.6 0.00027 9.3E-09 43.3 6.6 51 86-145 16-67 (100)
376 3p3d_A Nucleoporin 53; structu 97.6 0.00011 3.6E-09 47.7 4.8 76 87-162 8-98 (132)
377 3ctr_A Poly(A)-specific ribonu 97.4 0.0002 6.8E-09 44.0 4.2 50 87-145 7-57 (101)
378 2l08_A Regulator of nonsense t 97.0 0.0012 4.2E-08 40.5 4.6 67 86-152 9-79 (97)
379 3pq1_A Poly(A) RNA polymerase; 96.9 0.00062 2.1E-08 53.5 3.5 54 87-146 54-108 (464)
380 1owx_A Lupus LA protein, SS-B, 96.8 0.00032 1.1E-08 45.1 1.1 46 10-55 19-75 (121)
381 2dit_A HIV TAT specific factor 96.5 0.00086 3E-08 42.3 1.4 53 10-62 16-90 (112)
382 2pe8_A Splicing factor 45; RRM 96.2 0.0028 9.7E-08 39.5 2.5 59 3-61 2-81 (105)
383 1jmt_A Splicing factor U2AF 35 94.8 0.0071 2.4E-07 37.6 0.7 48 14-61 20-93 (104)
384 3v4m_A Splicing factor U2AF 65 93.8 0.028 9.5E-07 34.9 1.9 51 11-61 7-84 (105)
385 2d9o_A DNAJ (HSP40) homolog, s 93.6 0.026 8.9E-07 34.8 1.5 37 19-55 27-73 (100)
386 3d45_A Poly(A)-specific ribonu 93.4 0.39 1.3E-05 38.3 8.3 54 85-147 439-494 (507)
387 3ue2_A Poly(U)-binding-splicin 91.9 0.068 2.3E-06 33.9 1.7 52 10-61 21-96 (118)
388 3s6e_A RNA-binding protein 39; 91.2 0.069 2.3E-06 33.7 1.2 40 23-62 31-81 (114)
389 2dhx_A Poly (ADP-ribose) polym 90.3 0.14 4.7E-06 31.7 1.9 78 9-98 8-99 (104)
390 2dnr_A Synaptojanin-1; RRM dom 90.3 0.043 1.5E-06 33.2 -0.4 56 6-62 4-74 (91)
391 3ctr_A Poly(A)-specific ribonu 89.6 0.15 5.2E-06 31.2 1.6 46 11-56 7-59 (101)
392 1whv_A Poly(A)-specific ribonu 89.6 0.14 4.7E-06 31.4 1.4 46 11-56 17-69 (100)
393 1ufw_A Synaptojanin 2; RNP dom 87.1 0.16 5.5E-06 30.9 0.6 50 10-60 16-81 (95)
394 3mfb_A Uncharacterized protein 58.6 23 0.00079 23.4 5.1 37 97-133 3-42 (157)
395 3dxb_A Thioredoxin N-terminall 53.7 6.7 0.00023 27.0 2.0 40 23-62 143-201 (222)
396 2ki0_A DS119; beta-alpha-beta, 50.5 1.8 6.3E-05 20.1 -0.9 13 8-20 4-16 (36)
397 4e8u_A Putative uncharacterize 46.5 64 0.0022 21.7 5.8 46 97-145 33-81 (172)
398 2g0c_A ATP-dependent RNA helic 37.8 53 0.0018 18.2 6.3 65 88-161 2-75 (76)
399 3pq1_A Poly(A) RNA polymerase; 36.9 14 0.00049 29.0 1.7 30 10-40 54-83 (464)
400 1f32_A Major pepsin inhibitor 34.8 26 0.00088 22.6 2.3 26 10-35 18-43 (149)
401 3swz_A Steroid 17-alpha-hydrox 32.7 76 0.0026 24.2 5.2 58 89-155 17-79 (494)
402 2i9x_A Putative septation prot 32.4 78 0.0027 18.6 4.1 26 111-136 5-30 (87)
403 3fut_A Dimethyladenosine trans 29.5 57 0.002 23.4 3.8 30 87-117 111-141 (271)
404 3ts2_A Protein LIN-28 homolog 28.0 9.2 0.00031 25.0 -0.7 28 100-135 2-29 (148)
405 3uzu_A Ribosomal RNA small sub 27.9 40 0.0014 24.3 2.7 32 87-118 115-147 (279)
406 2ia9_A Putative septation prot 27.9 1E+02 0.0035 18.6 4.1 26 111-136 5-30 (100)
407 2i9z_A Putative septation prot 27.0 1.1E+02 0.0038 18.7 4.1 26 111-136 5-30 (105)
408 3tqs_A Ribosomal RNA small sub 24.9 35 0.0012 24.2 1.9 30 89-118 99-129 (255)
409 4aj5_1 SKA3, spindle and kinet 24.2 26 0.0009 21.2 0.9 13 98-110 89-101 (101)
410 1igq_A Transcriptional repress 23.2 1E+02 0.0035 16.9 3.1 22 114-136 21-42 (62)
411 1fme_A FSD-EY peptide; beta-BE 20.9 60 0.0021 14.0 1.5 13 97-109 13-25 (28)
412 3j21_T 50S ribosomal protein L 20.7 1.4E+02 0.0047 17.4 5.3 52 89-143 25-79 (86)
413 1qyr_A KSGA, high level kasuga 20.6 91 0.0031 22.0 3.4 29 87-115 91-120 (252)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=7.2e-32 Score=190.51 Aligned_cols=158 Identities=28% Similarity=0.412 Sum_probs=117.4
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhhccCCCCCCCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHM 72 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 72 (168)
..+||||||||+++++..|+++|+.||.+.. |+|.|.++..+.+|+.. .+.......+....+.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeeccc
Confidence 3469999999999999999999999997654 55556566677777754 2222222222222222
Q ss_pred CCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCcee
Q psy40 73 DKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEF 151 (168)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i 151 (168)
.......+......++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..++..+
T Consensus 91 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~ 170 (196)
T 1l3k_A 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV 170 (196)
T ss_dssp C-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEE
T ss_pred CcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEE
Confidence 232233333445668999999999 9999999999999999999999999899999999999999999999999789999
Q ss_pred CCcee-EeeecccccC
Q psy40 152 NDYDV-VDKIVCKYNI 166 (168)
Q Consensus 152 ~G~~i-v~~a~~~~~~ 166 (168)
+|+.| |++|.|+.++
T Consensus 171 ~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 171 NGHNCEVRKALSKQEM 186 (196)
T ss_dssp TTEECEEEECC-----
T ss_pred CCEEEEEEecCChhHh
Confidence 99999 9999998764
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.1e-31 Score=180.01 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=123.8
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKL 75 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 75 (168)
+||||+|||+++++..|++.|+.+|.+. .|+|.|.++..+.+|+...++.......+....+.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 4899999999999999999999999764 46667777778888887776665443333222222211
Q ss_pred ccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC
Q psy40 76 EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND 153 (168)
Q Consensus 76 ~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G 153 (168)
.....+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+. +++..++|
T Consensus 81 ----~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 81 ----QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp ----CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred ----CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 12334568999999999 9999999999999999999999998899999999999999999999998 99999999
Q ss_pred cee-Eeeecc
Q psy40 154 YDV-VDKIVC 162 (168)
Q Consensus 154 ~~i-v~~a~~ 162 (168)
++| |++|++
T Consensus 157 ~~i~v~~a~~ 166 (166)
T 3md3_A 157 RPLRINWAAK 166 (166)
T ss_dssp EECEEEESCC
T ss_pred cEEEEEecCC
Confidence 999 999864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.8e-31 Score=191.39 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=119.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhccccee---------------EEEecCCccchHHHHHhhhhhhccCCCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVL---------------EVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMD 73 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~---------------~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 73 (168)
.+||||||||++++++.|+++|++||.+..+ +|.|.++..+.+|+...+........+....+..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 4699999999999999999999999987655 4555555577788877665543333222211111
Q ss_pred CcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee
Q psy40 74 KLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF 151 (168)
Q Consensus 74 ~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i 151 (168)
... ......++|||+|||+ +++++|+++|++||.|..+++++|+ +.++|||||+|.+.++|.+||+ |++..|
T Consensus 95 ~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 95 DPS----LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CTH----HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccc----ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 111 1112347899999999 9999999999999999999999985 4579999999999999999998 999999
Q ss_pred CCcee-Eeeeccccc
Q psy40 152 NDYDV-VDKIVCKYN 165 (168)
Q Consensus 152 ~G~~i-v~~a~~~~~ 165 (168)
+|++| |++|+++.+
T Consensus 169 ~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 169 NDRKVFVGRFKSRKE 183 (213)
T ss_dssp TTEECEEEECCCHHH
T ss_pred CCEEEEEEEcCCCcc
Confidence 99999 999998754
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=2.7e-31 Score=183.17 Aligned_cols=147 Identities=21% Similarity=0.366 Sum_probs=120.0
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
+||||||||++++++.|++.|+.||.+. .|+|.|.++..+.+|+... .......+....+.++
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~--~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ--HILDGKVIDPKRAIPR 81 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC--CEETTEECCCEECCCH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc--cccCCeEcccccccch
Confidence 5899999999999999999999999753 5777777777888888641 1111112222222221
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCC
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G 153 (168)
.. ..+.++|||+|||+ +++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+++++..++|
T Consensus 82 ~~------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g 155 (167)
T 2cjk_A 82 DE------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKD 155 (167)
T ss_dssp HH------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSS
T ss_pred hh------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCC
Confidence 11 12357999999999 999999999999999999999999889999999999999999999999999999999
Q ss_pred cee-Eeeecccc
Q psy40 154 YDV-VDKIVCKY 164 (168)
Q Consensus 154 ~~i-v~~a~~~~ 164 (168)
++| |++|.||+
T Consensus 156 ~~i~V~~a~pk~ 167 (167)
T 2cjk_A 156 RKIEIKRAEPRH 167 (167)
T ss_dssp SCEEEEECCCCC
T ss_pred eEEEEeecCCCC
Confidence 999 99999984
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1.7e-29 Score=174.18 Aligned_cols=145 Identities=15% Similarity=0.129 Sum_probs=121.3
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
+||||+|||++++++.|++.|+.+|.+ +.++|.|.++..+.+|+...++.......+....+.+.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 589999999999999999999999976 35778888888888888876665443333322222221
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
. ...+.++|||+|||. +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++ +++..+.
T Consensus 84 ~------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 84 G------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp S------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred c------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 1 233558999999999 9999999999999999999999999889999999999999999999998 9999998
Q ss_pred C--cee-Eeee
Q psy40 153 D--YDV-VDKI 160 (168)
Q Consensus 153 G--~~i-v~~a 160 (168)
| ++| |++|
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 999 9886
No 6
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=1.9e-29 Score=178.29 Aligned_cols=156 Identities=17% Similarity=0.277 Sum_probs=125.1
Q ss_pred eEEEEECCceeeeecccchhHhhhhc-----------c---------cceeEEEecCCccchHHHHHhhhhhhccCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAV-----------E---------AGVLEVVTTRPTINNKAMEEAQSEEEVDMEIPG 68 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g-----------~---------~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~ 68 (168)
-+||||||||++++++.|+++|+.|| . .+.++|.|.++..+.+|+ ..++.......+..
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEE
Confidence 36999999999999999999999994 2 357899999999999999 55554422222111
Q ss_pred CCCCCCc--------------ccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEE
Q psy40 69 PPHMDKL--------------EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 133 (168)
Q Consensus 69 ~~~~~~~--------------~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~ 133 (168)
..+.... .........+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~ 162 (198)
T 2yh0_A 83 RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 162 (198)
T ss_dssp ECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred eCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEE
Confidence 1111100 000111224668999999999 9999999999999999999999998899999999999
Q ss_pred EcCHHHHHHHHh-hCCceeCCcee-Eeeeccccc
Q psy40 134 FNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 134 f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~~~ 165 (168)
|.+.++|.+|++ +++..++|+.| |.+|.|+..
T Consensus 163 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 163 YVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp ESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999998 99999999999 999998764
No 7
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.1e-29 Score=175.76 Aligned_cols=144 Identities=19% Similarity=0.301 Sum_probs=119.8
Q ss_pred EEEEECCceeeeecccchhHhhhh----c-------c---------cceeEEEecCCccchHHHHHhhhhhhccCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLA----V-------E---------AGVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGP 69 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~----g-------~---------~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 69 (168)
+||||||||++++++.|++.|+.+ | . .+.++|.|.++..+.+|+ ..++.......+...
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~ 83 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 83 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeec
Confidence 699999999999999999999999 4 2 356889999999999998 555544333322222
Q ss_pred CCCCCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC
Q psy40 70 PHMDKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA 147 (168)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~ 147 (168)
..... ......++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++ ++
T Consensus 84 ~~~~~------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (172)
T 2g4b_A 84 RPHDY------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 157 (172)
T ss_dssp CCSSC------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT
T ss_pred CCccc------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 21111 1123358999999999 9999999999999999999999998899999999999999999999998 99
Q ss_pred CceeCCcee-Eeee
Q psy40 148 FIEFNDYDV-VDKI 160 (168)
Q Consensus 148 ~~~i~G~~i-v~~a 160 (168)
+..++|++| |++|
T Consensus 158 g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 158 GMQLGDKKLLVQRA 171 (172)
T ss_dssp TCEETTEECEEEEC
T ss_pred CCEECCeEEEEEeC
Confidence 999999999 9987
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=1.5e-29 Score=181.11 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=125.1
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMD 73 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 73 (168)
.+||||+|||++++++.|+++|+.||.+. .++|.|.++..+.+|+...++.......+.......
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 35999999999999999999999999754 466777777788888887666544333332222221
Q ss_pred CcccCC-----CCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-h
Q psy40 74 KLEIGK-----PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-F 146 (168)
Q Consensus 74 ~~~~~~-----~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~ 146 (168)
...... .......++|||+|||. +++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++ +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 111000 01123558999999999 9999999999999999999999998899999999999999999999998 9
Q ss_pred CCceeCCcee-Eeeeccccc
Q psy40 147 AFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 147 ~~~~i~G~~i-v~~a~~~~~ 165 (168)
++..|+|++| |.++.++..
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSS
T ss_pred cCCEeCCcEEEEEEecCCCC
Confidence 9999999999 999988753
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=3.5e-29 Score=172.24 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=118.5
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
+||||+|||++++++.|++.|+.+|.+. .|+|.|.++..+.+|+...++.......+....+.+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 5899999999999999999999999764 4666676777888888776655443333322222221
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
. .....++|||+|||+ +++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|.+|++ +++..+.
T Consensus 83 ~------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 83 S------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp C------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred c------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 1 123457899999999 9999999999999999999999998889999999999999999999998 9999999
Q ss_pred Cce--e-Eeee
Q psy40 153 DYD--V-VDKI 160 (168)
Q Consensus 153 G~~--i-v~~a 160 (168)
|+. | |+||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 976 6 7775
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=7.9e-29 Score=171.76 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=115.8
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce-----------------eEEEecCCccchHHHHHhhhhhhccCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV-----------------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPH 71 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~-----------------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 71 (168)
-+||||||||+++++..|++.|+.||.+.. ++|.|.++..+.+|+...++............
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~- 81 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ- 81 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE-
Confidence 369999999999999999999999997644 55666666678888877655433222111110
Q ss_pred CCCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCc
Q psy40 72 MDKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFI 149 (168)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~ 149 (168)
..............++|||+|||+ +|+++|+++|++||.|.++.++++. +|+++|||||+|.+.++|.+|++ +++.
T Consensus 82 -~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 82 -MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp -EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred -EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 001111112233568999999999 9999999999999999999999986 59999999999999999999997 9988
Q ss_pred eeC---Ccee-Eeeec
Q psy40 150 EFN---DYDV-VDKIV 161 (168)
Q Consensus 150 ~i~---G~~i-v~~a~ 161 (168)
.+. |++| |+||.
T Consensus 160 ~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 160 QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCCTTCSSCCEEEECC
T ss_pred cccCCCCCCeEEEecC
Confidence 775 4999 99973
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1.9e-28 Score=170.14 Aligned_cols=146 Identities=17% Similarity=0.062 Sum_probs=119.0
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc--------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA--------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~--------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
-+||||||||++++++.|++.|..+|.+ +.|+|.|.++..+.+|+ ++++.......+....+.++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCc
Confidence 4699999999999999999999999742 57899999999999999 45555443333322222222
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
. .......++|||+|||+ +++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|+. +++..++
T Consensus 92 ~----~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 1fje_B 92 D----SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 162 (175)
T ss_dssp S----CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET
T ss_pred c----ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 1 12233568999999999 9999999999999988766 3478999999999999999999998 9999999
Q ss_pred Ccee-Eeeecccc
Q psy40 153 DYDV-VDKIVCKY 164 (168)
Q Consensus 153 G~~i-v~~a~~~~ 164 (168)
|++| |++|.||.
T Consensus 163 g~~i~v~~a~~k~ 175 (175)
T 1fje_B 163 GRSVSLYYTGEKG 175 (175)
T ss_dssp TEEEEEEECSSCC
T ss_pred CeEEEEEecCCCC
Confidence 9999 99999874
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=8.5e-28 Score=179.50 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=124.3
Q ss_pred EEEEECCceeeeecccchhHhhhhc-cc--------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAV-EA--------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g-~~--------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
++|||+|||+.+++..|++.|+.+| .+ +.++|.|.++..+.+|+..+++.......+....+.+.
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4999999999999999999999999 54 45778888888899999877766544433333333333
Q ss_pred cccCCC-CCCCCCcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCC-CCCceeEEEEEEcCHHHHHHHHhhCCce
Q psy40 75 LEIGKP-EANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKE-TGAKRGFAFIEFNDYDVVDKIRGFAFIE 150 (168)
Q Consensus 75 ~~~~~~-~~~~~~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~-tg~~~g~afV~f~~~~~a~~ai~~~~~~ 150 (168)
...... ......++|||+|||+ +++++|+++|++||.|..++++++.. ||.++|||||+|.+.++|.+|+.+++..
T Consensus 198 ~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~ 277 (292)
T 2ghp_A 198 EKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSL 277 (292)
T ss_dssp ---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEE
T ss_pred cccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCE
Confidence 222222 3345678999999998 89999999999999999999999876 5999999999999999999999999999
Q ss_pred eCCcee-Eeeecccc
Q psy40 151 FNDYDV-VDKIVCKY 164 (168)
Q Consensus 151 i~G~~i-v~~a~~~~ 164 (168)
|.|++| |.+|.||+
T Consensus 278 ~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 278 LGNREISVSLADKKP 292 (292)
T ss_dssp ETTEEEEEEECCCCC
T ss_pred ECCcEEEEEEecCCC
Confidence 999999 99999884
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=1.8e-27 Score=169.61 Aligned_cols=150 Identities=9% Similarity=0.034 Sum_probs=116.3
Q ss_pred eEEEEECCce-eeeecccchhHhhhhccc----------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCC-----C
Q psy40 9 VSTVYSGSGG-WWFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPH-----M 72 (168)
Q Consensus 9 ~~tlfvg~l~-~~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~ 72 (168)
-+|||||||| +.++++.|+++|+.||.+ +.++|.+.++..+.+|+..+++.......+....+ .
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~ 83 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIM 83 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccC
Confidence 3699999999 899999999999999976 45778888888999999988766533222211110 0
Q ss_pred CCc------------c--------------cCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcE--eEEEEeccCCC
Q psy40 73 DKL------------E--------------IGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTI--ESVNMVTNKET 123 (168)
Q Consensus 73 ~~~------------~--------------~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v--~~v~i~~d~~t 123 (168)
++. + ........++++|||+|||+ +|+++|+++|++||.| .++++++++
T Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-- 161 (205)
T 3tyt_A 84 PGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-- 161 (205)
T ss_dssp CCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--
T ss_pred CCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--
Confidence 000 0 00001123567999999999 9999999999999999 899998875
Q ss_pred CCceeEEEEEEcCHHHHHHHHh-hCCceeCCc----ee-Eeee
Q psy40 124 GAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDY----DV-VDKI 160 (168)
Q Consensus 124 g~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~----~i-v~~a 160 (168)
+.++|||||+|.+.++|.+||. +++..|.|+ ++ |++|
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 5567999999999999999998 999999887 56 7776
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=7.4e-27 Score=173.77 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=123.1
Q ss_pred EEEEECCceeeeecccchhHhhhhc--------ccceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcccCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAV--------EAGVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPE 81 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g--------~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (168)
+||||+|||+++++..|+++|+.|| ..+.|+|.|.++..+.+|+...++.......+....
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~----------- 91 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL----------- 91 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-----------
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-----------
Confidence 5999999999999999999999999 124688889999999999987766553332222211
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
....++|||+|||+ +++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|++| |.
T Consensus 92 -~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~ 170 (284)
T 3smz_A 92 -QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 170 (284)
T ss_dssp -CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred -cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 12347999999999 9999999999999999999999999899999999999999999999997 99999999999 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
++.++.
T Consensus 171 ~a~~~~ 176 (284)
T 3smz_A 171 WTDAGQ 176 (284)
T ss_dssp ECCGGG
T ss_pred ECCCCC
Confidence 998765
No 15
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=5.8e-27 Score=172.71 Aligned_cols=143 Identities=17% Similarity=0.078 Sum_probs=118.1
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcccCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKP 80 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
+||||||||+++++..|++.|+.||.+ +.|+|.|.++..+.+|+...++.......+....+
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a--------- 93 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA--------- 93 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC---------
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec---------
Confidence 599999999999999999999999976 45778888888899988876655433322222111
Q ss_pred CCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC-CceeC---Cc
Q psy40 81 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA-FIEFN---DY 154 (168)
Q Consensus 81 ~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~-~~~i~---G~ 154 (168)
.+..+|||+|||+ +|+++|+++|++||.|..+.++.|. +|+++|||||+|.+.++|.+|+. ++ +..+. |+
T Consensus 94 ---~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r 169 (261)
T 3sde_A 94 ---THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR 169 (261)
T ss_dssp ---CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC
T ss_pred ---ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc
Confidence 1357899999999 9999999999999999999999994 89999999999999999999998 74 44444 99
Q ss_pred ee-Eeeeccccc
Q psy40 155 DV-VDKIVCKYN 165 (168)
Q Consensus 155 ~i-v~~a~~~~~ 165 (168)
+| |.++.+..+
T Consensus 170 ~i~v~~~~~~~~ 181 (261)
T 3sde_A 170 PVIVEPMEQFDD 181 (261)
T ss_dssp BCEEEECCCEES
T ss_pred eEEEeeccccCc
Confidence 99 999987643
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=3e-26 Score=165.84 Aligned_cols=150 Identities=10% Similarity=0.021 Sum_probs=117.7
Q ss_pred eEEEEECCcee-eeecccchhHhhhhccc----------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC---
Q psy40 9 VSTVYSGSGGW-WFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK--- 74 (168)
Q Consensus 9 ~~tlfvg~l~~-~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 74 (168)
-+||||+|||+ +++++.|+++|+.||.+ +.++|.|.++..+.+|+...++.......+....+...
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 113 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 113 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcccc
Confidence 36999999999 99999999999999975 45778888888999999877665433333222111111
Q ss_pred ---ccc-----------------C------CCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCC-cEeEEEEeccCCCCCc
Q psy40 75 ---LEI-----------------G------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAK 126 (168)
Q Consensus 75 ---~~~-----------------~------~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G-~v~~v~i~~d~~tg~~ 126 (168)
... . ......+.++|||+|||+ +++++|+++|++|| .|..++++++ .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~ 188 (229)
T 2adc_A 114 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----D 188 (229)
T ss_dssp CCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----S
T ss_pred CccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----C
Confidence 000 0 001123468999999999 99999999999999 9999999653 2
Q ss_pred eeEEEEEEcCHHHHHHHHh-hCCceeC-Ccee-Eeeeccc
Q psy40 127 RGFAFIEFNDYDVVDKIRG-FAFIEFN-DYDV-VDKIVCK 163 (168)
Q Consensus 127 ~g~afV~f~~~~~a~~ai~-~~~~~i~-G~~i-v~~a~~~ 163 (168)
+|||||+|.+.++|.+|++ +++..+. |++| |.|++|+
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 6899999999999999998 9999999 9999 9999875
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.9e-26 Score=171.62 Aligned_cols=152 Identities=10% Similarity=-0.032 Sum_probs=122.8
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
.+|||+|||+.+++..|++.|+.+|.+.. ++|.|.++..+.+|+...++.......+....+.+.
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 38999999999999999999999997654 455555666788888776665443333322222222
Q ss_pred cccCCCCCCCCCcEEEEeCCCC-C-CHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee
Q psy40 75 LEIGKPEANATVKKMFVGGLKD-Q-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF 151 (168)
Q Consensus 75 ~~~~~~~~~~~~~~l~V~nlp~-~-t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i 151 (168)
.. .......++|||+|||+ + ++++|+++|+.||.|..+.++++. +|.++|+|||+|.+.++|.+|+. +++..+
T Consensus 176 ~~---~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 176 QL---TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp GC---CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CC---CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 11 12234568999999999 7 999999999999999999999987 79999999999999999999998 999999
Q ss_pred CCcee-Eeeeccccc
Q psy40 152 NDYDV-VDKIVCKYN 165 (168)
Q Consensus 152 ~G~~i-v~~a~~~~~ 165 (168)
.|++| |.++.|+.+
T Consensus 252 ~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 252 GGSHLRVSFCAPGPP 266 (284)
T ss_dssp TTEECEEEECCSSSC
T ss_pred CCeEEEEEEecCCCc
Confidence 99999 999998865
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=2.1e-26 Score=162.91 Aligned_cols=149 Identities=10% Similarity=0.029 Sum_probs=117.7
Q ss_pred EEEEECCcee-eeecccchhHhhhhccc----------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC----
Q psy40 10 STVYSGSGGW-WFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK---- 74 (168)
Q Consensus 10 ~tlfvg~l~~-~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 74 (168)
+||||+|||+ .++++.|++.|+.||.+ +.++|.|.++..+.+|+...++.......+....+...
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 83 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQL 83 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCC
Confidence 6999999999 99999999999999975 45788888888999999877665433322211111100
Q ss_pred --cc-----------------------cCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCC-cEeEEEEeccCCCCCce
Q psy40 75 --LE-----------------------IGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKR 127 (168)
Q Consensus 75 --~~-----------------------~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G-~v~~v~i~~d~~tg~~~ 127 (168)
.. ........++++|||+|||. +++++|+++|++|| .|..++++++. +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~ 158 (198)
T 1qm9_A 84 PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----R 158 (198)
T ss_dssp SSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----S
T ss_pred CCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----C
Confidence 00 00001123578999999999 99999999999999 99999997642 6
Q ss_pred eEEEEEEcCHHHHHHHHh-hCCceeC-Ccee-Eeeeccc
Q psy40 128 GFAFIEFNDYDVVDKIRG-FAFIEFN-DYDV-VDKIVCK 163 (168)
Q Consensus 128 g~afV~f~~~~~a~~ai~-~~~~~i~-G~~i-v~~a~~~ 163 (168)
|+|||+|.+.++|.+|+. +++..+. |++| |.|++|+
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 899999999999999998 9999999 9999 9999875
No 19
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.93 E-value=8.2e-26 Score=143.34 Aligned_cols=79 Identities=19% Similarity=0.357 Sum_probs=75.9
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...++|||+|||+ +|+++|+++|++||.|.++++++|+.+|+++|||||+|.+.++|.+|++ +++..+.|++| |++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3457999999999 9999999999999999999999999999999999999999999999998 99999999999 9999
Q ss_pred cc
Q psy40 161 VC 162 (168)
Q Consensus 161 ~~ 162 (168)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 87
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=2.6e-25 Score=165.28 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=67.9
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC-Ccee-Eee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN-DYDV-VDK 159 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~-G~~i-v~~ 159 (168)
.+.++|||+|||. +++++|+++|++||.|.++++++++ +|||||+|.+.++|.+|++ +++..+. |+.| |.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3568899999999 9999999999999999999998654 5899999999999999998 9999999 9999 999
Q ss_pred ec
Q psy40 160 IV 161 (168)
Q Consensus 160 a~ 161 (168)
|+
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=4.3e-26 Score=170.24 Aligned_cols=142 Identities=10% Similarity=0.046 Sum_probs=108.6
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc-------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG-------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKL 75 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 75 (168)
-+||||+|||+++++..|.++|+.||.+. .|+|.|.++..+.+|+. .++.......+...
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~------ 113 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS------ 113 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE------
Confidence 46999999999999999999999999764 45566666667777773 33222211111111
Q ss_pred ccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 76 EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 76 ~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
....++|||+|||+ +++++|+++|++|| .|..+.+++++. |.++|||||+|.+.++|.+|+. +++..+.
T Consensus 114 -------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 185 (292)
T 2ghp_A 114 -------HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIE 185 (292)
T ss_dssp -------ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred -------ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 01358999999999 99999999999999 999999999875 8899999999999999999999 9999999
Q ss_pred Ccee-Eeeeccccc
Q psy40 153 DYDV-VDKIVCKYN 165 (168)
Q Consensus 153 G~~i-v~~a~~~~~ 165 (168)
|++| |.++.|+..
T Consensus 186 g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 186 GYTLVTKVSNPLEK 199 (292)
T ss_dssp TEECEEEECCCC--
T ss_pred CcEEEEEECCCCcc
Confidence 9999 999987653
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.92 E-value=8.7e-26 Score=141.12 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=75.7
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC-CceeCCcee-Eeee
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA-FIEFNDYDV-VDKI 160 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~-~~~i~G~~i-v~~a 160 (168)
+++|||+|||+ +|+++|+++|++|| .|.+|++++|+.||+++|||||+|.+.++|.+||+ ++ +..++|++| |++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999 99999999999999 89999999999999999999999999999999998 54 567999999 9999
Q ss_pred cccccCC
Q psy40 161 VCKYNIE 167 (168)
Q Consensus 161 ~~~~~~~ 167 (168)
.|+++.+
T Consensus 81 ~~~~~~~ 87 (91)
T 2lxi_A 81 DPKPKIN 87 (91)
T ss_dssp CSCCCCS
T ss_pred CCCCCCC
Confidence 9987643
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=139.27 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=76.6
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++||.|.++.|++|+.||+++|||||+|++.++|.+||+ +++..+.|+.| |.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568999999999 9999999999999999999999999999999999999999999999998 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
..+.
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7654
No 24
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=3.6e-24 Score=146.60 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=101.5
Q ss_pred cceeEEEecCCccchHHHHHhhhhhhccCCCCC-------CCCCCCcccCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHh
Q psy40 36 AGVLEVVTTRPTINNKAMEEAQSEEEVDMEIPG-------PPHMDKLEIGKPEANATVKKMFVGGLKD-QEEDDLREYFS 107 (168)
Q Consensus 36 ~~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~ 107 (168)
.+.++|.+.++..+.+++...+........... ..................++|||+|||+ +++++|+++|+
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~ 92 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFE 92 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 467899999999999999876654322111100 0000111111222334568999999999 99999999999
Q ss_pred cCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeeccccc
Q psy40 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 108 ~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~~~ 165 (168)
+||.|..+.+++|+.+|+++|||||+|.+.++|.+||+ +++..+.|++| |.+|.++..
T Consensus 93 ~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 93 KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999998899999999999999999999998 99999999999 999987643
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.91 E-value=1.1e-23 Score=129.23 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=76.0
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeeccc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~ 163 (168)
.+|||+|||+ +++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++ +++..+.|++| |++|.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 6899999999 9999999999999999999999998899999999999999999999998 99999999999 9999988
Q ss_pred cc
Q psy40 164 YN 165 (168)
Q Consensus 164 ~~ 165 (168)
++
T Consensus 82 ~~ 83 (83)
T 3md1_A 82 EH 83 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 26
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.91 E-value=8.6e-24 Score=130.76 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=74.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++ +++..++|++| |++|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3568999999999 9999999999999999999999998899999999999999999999998 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
++++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 9874
No 27
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=132.28 Aligned_cols=84 Identities=33% Similarity=0.584 Sum_probs=79.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+|++++++.+.|++| |.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34568999999999 999999999999999999999999989999999999999999999999999999999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 988653
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.90 E-value=1.8e-24 Score=135.92 Aligned_cols=76 Identities=14% Similarity=0.357 Sum_probs=71.2
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCc--EeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCc----eeCCcee-E
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGT--IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFI----EFNDYDV-V 157 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~--v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~----~i~G~~i-v 157 (168)
.||||+|||+ +|+++|+++|++||. +.+|++++|+.||++||||||+|.+.++|.+|++ +++. .|+||+| |
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 7899999999 999999999999995 6799999999999999999999999999999998 8775 5999999 9
Q ss_pred eeecc
Q psy40 158 DKIVC 162 (168)
Q Consensus 158 ~~a~~ 162 (168)
++|++
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99975
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5.4e-23 Score=130.44 Aligned_cols=82 Identities=20% Similarity=0.362 Sum_probs=77.5
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999 9999999999999999999999998 89999999999999999999997 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++|+.+
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 999875
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=3.1e-23 Score=131.30 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=78.4
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++ +++..+.|++| |.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999999 9999999999999999999999999899999999999999999999997 99999999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
+++.+.
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 988753
No 31
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=133.57 Aligned_cols=83 Identities=30% Similarity=0.528 Sum_probs=78.5
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568999999999 9999999999999999999999999899999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++.+
T Consensus 103 a~~k~d 108 (108)
T 2jrs_A 103 VTERTD 108 (108)
T ss_dssp SCSSCC
T ss_pred cccCCC
Confidence 999864
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3.9e-23 Score=132.43 Aligned_cols=84 Identities=18% Similarity=0.413 Sum_probs=78.8
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++ +++..+.|+.| |.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 344568999999999 9999999999999999999999999999999999999999999999998 99999999999 99
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
+|.++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988764
No 33
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=5.5e-23 Score=132.76 Aligned_cols=84 Identities=25% Similarity=0.373 Sum_probs=78.9
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC------CceeCCc
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA------FIEFNDY 154 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~------~~~i~G~ 154 (168)
..+.++|||+|||+ +++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+||+ ++ +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 34568999999999 9999999999999999999999999999999999999999999999998 98 9999999
Q ss_pred ee-EeeecccccC
Q psy40 155 DV-VDKIVCKYNI 166 (168)
Q Consensus 155 ~i-v~~a~~~~~~ 166 (168)
+| |.++.++.+.
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 99 9999988653
No 34
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4.7e-23 Score=131.82 Aligned_cols=84 Identities=25% Similarity=0.408 Sum_probs=78.9
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++..|.|++| |.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34568999999999 9999999999999999999999999899999999999999999999998 99999999999 999
Q ss_pred ecccccC
Q psy40 160 IVCKYNI 166 (168)
Q Consensus 160 a~~~~~~ 166 (168)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887653
No 35
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.90 E-value=3.3e-23 Score=130.56 Aligned_cols=81 Identities=19% Similarity=0.332 Sum_probs=77.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
++++|||+|||+ +++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|.+|++ +++..++|+.| |++|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 358999999999 9999999999999999999999999899999999999999999999997 99999999999 99999
Q ss_pred cccc
Q psy40 162 CKYN 165 (168)
Q Consensus 162 ~~~~ 165 (168)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8764
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5.1e-23 Score=129.32 Aligned_cols=82 Identities=24% Similarity=0.479 Sum_probs=78.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
+.++|||+|||+ +++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+|++ +++..+.|++| |+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 568999999999 9999999999999999999999999899999999999999999999998 99999999999 99999
Q ss_pred ccccC
Q psy40 162 CKYNI 166 (168)
Q Consensus 162 ~~~~~ 166 (168)
++.+.
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88653
No 37
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.90 E-value=4.9e-23 Score=127.39 Aligned_cols=78 Identities=32% Similarity=0.565 Sum_probs=73.7
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|++++++.++|+.| |++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34568999999999 999999999999999999999999989999999999999999999999988899999999 9876
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=6.1e-23 Score=130.90 Aligned_cols=83 Identities=25% Similarity=0.422 Sum_probs=78.5
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|++ +++..|.|+.| |.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34568999999999 9999999999999999999999998899999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 988764
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=3.8e-23 Score=134.48 Aligned_cols=78 Identities=22% Similarity=0.463 Sum_probs=73.0
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecc
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~ 162 (168)
..+|||+|||+ +++++|+++|++||.|.+|+|++|+ +.++|||||+|.+.++|.+||+ +++..|+|++| |.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999 9999999999999999999999986 4589999999999999999998 99999999999 999988
Q ss_pred ccc
Q psy40 163 KYN 165 (168)
Q Consensus 163 ~~~ 165 (168)
+.+
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=7.8e-23 Score=132.91 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=78.7
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+||+ +++..|.|+.| |.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999 9999999999999999999999999899999999999999999999997 99999999999 999
Q ss_pred ecccccC
Q psy40 160 IVCKYNI 166 (168)
Q Consensus 160 a~~~~~~ 166 (168)
++++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9987653
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=8e-23 Score=131.14 Aligned_cols=84 Identities=23% Similarity=0.414 Sum_probs=78.5
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEecc-CCCCCceeEEEEEEcCHHHHHHHHh-h-CCceeCCcee-E
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTN-KETGAKRGFAFIEFNDYDVVDKIRG-F-AFIEFNDYDV-V 157 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d-~~tg~~~g~afV~f~~~~~a~~ai~-~-~~~~i~G~~i-v 157 (168)
..+.++|||+|||+ +++++|+++|++||.|..|.++++ +.++.++|||||+|.+.++|.+|++ + ++..|.|++| |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 44668999999999 999999999999999999999999 7889999999999999999999998 8 8999999999 9
Q ss_pred eeecccccC
Q psy40 158 DKIVCKYNI 166 (168)
Q Consensus 158 ~~a~~~~~~ 166 (168)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999987654
No 42
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=7.3e-24 Score=132.06 Aligned_cols=79 Identities=19% Similarity=0.327 Sum_probs=69.8
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCC--cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G--~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
.+|||+|||+ +++++|+++|++|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++ +++..++|+.| |.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999 99999999999999 99999999999999999999999999999999997 99999999999 99998
Q ss_pred cccc
Q psy40 162 CKYN 165 (168)
Q Consensus 162 ~~~~ 165 (168)
|+..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8754
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.89 E-value=7.1e-23 Score=132.08 Aligned_cols=83 Identities=20% Similarity=0.391 Sum_probs=78.5
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +++..+.|++| |.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44568999999999 9999999999999999999999999899999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 988764
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=1.5e-22 Score=131.53 Aligned_cols=83 Identities=19% Similarity=0.323 Sum_probs=78.1
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+||+ +++..|.|+.| |.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999 9999999999999999999999998899999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 988754
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=1.6e-22 Score=128.90 Aligned_cols=82 Identities=23% Similarity=0.405 Sum_probs=77.3
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
..+.++|||+|||+ +++++|+++|++|| |..+++++++.+|+++|||||+|.+.++|.+|+.+++..|.|++| |.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 44568999999999 99999999999997 999999999999999999999999999999999999999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88764
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4.4e-23 Score=129.85 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=77.2
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEE-EEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESV-NMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v-~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
+.++|||+|||+ +++++|+++|++||.|..+ ++++++.+|.++|||||+|.+.++|.+|++ +++..+.|++| |+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 458999999999 9999999999999999999 999998899999999999999999999999 99999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88764
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.89 E-value=5.9e-23 Score=126.44 Aligned_cols=78 Identities=27% Similarity=0.435 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++ +++..+.|++| |++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999999 9999999999999999999999998899999999999999999999997 99999999999 9998
Q ss_pred c
Q psy40 161 V 161 (168)
Q Consensus 161 ~ 161 (168)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 48
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4.1e-23 Score=131.69 Aligned_cols=77 Identities=16% Similarity=0.291 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
..++|||+|||+ +|+++|+++|++||.|.+|++++|+. |+++|||||+|.+.++|.+||.++++.++|+.| |.++.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 458999999999 99999999999999999999999987 999999999999999999999999999999999 998765
No 49
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.7e-22 Score=126.94 Aligned_cols=80 Identities=29% Similarity=0.410 Sum_probs=75.9
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999 9999999999999999999999999899999999999999999999998 99999999999 999
Q ss_pred ecc
Q psy40 160 IVC 162 (168)
Q Consensus 160 a~~ 162 (168)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5.2e-23 Score=130.95 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=78.2
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+|++ +++..|.|++| |.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34568999999999 9999999999999999999999998899999999999999999999997 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988764
No 51
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.89 E-value=7.7e-23 Score=131.79 Aligned_cols=84 Identities=30% Similarity=0.473 Sum_probs=75.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
..+.++|||+|||+ +++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+||+..+..++|+.| |+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 34568999999999 999999999999999999999999989999999999999999999999955699999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
.++...
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988653
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=128.57 Aligned_cols=80 Identities=28% Similarity=0.473 Sum_probs=75.3
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeE--------EEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF 151 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~--------v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i 151 (168)
...+.++|||+|||+ +++++|+++|++||.|.. +++++++.+|+++|||||+|.+.++|.+|++ +++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 345668999999999 999999999999999999 9999999899999999999999999999998 999999
Q ss_pred CCcee-Eeeec
Q psy40 152 NDYDV-VDKIV 161 (168)
Q Consensus 152 ~G~~i-v~~a~ 161 (168)
.|+.| |++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999 99884
No 53
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.8e-22 Score=127.81 Aligned_cols=83 Identities=27% Similarity=0.403 Sum_probs=77.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+||. +++.++|++| |+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 34568999999999 9999999999999999999999999899999999999999999999998 4689999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
.++.+.
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 988754
No 54
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=7.3e-23 Score=130.28 Aligned_cols=83 Identities=29% Similarity=0.473 Sum_probs=78.1
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++..|.|++| |.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999 9999999999999999999999999899999999999999999999997 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 988764
No 55
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=132.28 Aligned_cols=83 Identities=19% Similarity=0.351 Sum_probs=75.0
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccC-CCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNK-ETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~-~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~ 158 (168)
.....++|||+|||+ +++++|+++|++|| |.++++++++ .+|+++|||||+|.+.++|.+|+.+++..++|+.| |+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 345668999999999 99999999999999 9999999998 68999999999999999999999999999999999 99
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
+++++++
T Consensus 94 ~a~~~~~ 100 (100)
T 2j76_E 94 VADQAQD 100 (100)
T ss_dssp ECCCSCC
T ss_pred eccCCCC
Confidence 9998864
No 56
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=8.2e-23 Score=130.28 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=77.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++ +++..+.|+.| |.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999 9999999999999999999999999999999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
|+++..
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987643
No 57
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-22 Score=129.41 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=77.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCC-CCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET-GAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~t-g~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++|| |..|.+++++.+ |+++|||||+|.+.++|.+||.+++..+.|+.| |.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999 99999999999999 999999999887 999999999999999999999999999999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
.++.+.
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987653
No 58
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=9.2e-23 Score=130.49 Aligned_cols=83 Identities=27% Similarity=0.490 Sum_probs=78.3
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
..+.++|||+|||+ +++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+||+.++..|+|+.| |.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 44568999999999 999999999999999999999999989999999999999999999999888899999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.|+.+
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 98765
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=126.66 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=74.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34568999999999 9999999999999999999999999899999999999999999999997 99999999999 999
Q ss_pred ec
Q psy40 160 IV 161 (168)
Q Consensus 160 a~ 161 (168)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 60
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.89 E-value=1.2e-22 Score=130.16 Aligned_cols=83 Identities=20% Similarity=0.404 Sum_probs=77.6
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee---CCcee-
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF---NDYDV- 156 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i---~G~~i- 156 (168)
..+.++|||+|||+ +++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++ +++..+ .|++|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34568999999999 9999999999999999999999999999999999999999999999998 999887 89999
Q ss_pred Eeeeccccc
Q psy40 157 VDKIVCKYN 165 (168)
Q Consensus 157 v~~a~~~~~ 165 (168)
|+++.++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999988764
No 61
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=127.90 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEe-EEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCce----
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIE-SVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYD---- 155 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~-~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~---- 155 (168)
..+.++|||+|||+ +++++|+++|++||.|. .+++++++.+|+++|||||+|.+.++|.+|++ +++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999 99999999999999999 99999999999999999999999999999998 9999999999
Q ss_pred e-Eeeecccc
Q psy40 156 V-VDKIVCKY 164 (168)
Q Consensus 156 i-v~~a~~~~ 164 (168)
| |.+|.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9 99998754
No 62
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.89 E-value=4.4e-22 Score=127.25 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=76.6
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC---cee-E
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND---YDV-V 157 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G---~~i-v 157 (168)
.+.++|||+|||+ +++++|+++|++||.|..+.+++++ +|.++|||||+|.+.++|.+|++ +++..+.| ++| |
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 3568999999999 9999999999999999999999998 79999999999999999999998 99999988 999 9
Q ss_pred eeecccccC
Q psy40 158 DKIVCKYNI 166 (168)
Q Consensus 158 ~~a~~~~~~ 166 (168)
.+|+++.+.
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999887653
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=127.77 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=76.2
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++||.|..+.++.+ +|.++|||||+|.+.++|.+|++ +++..+.|++| |.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4568999999999 999999999999999999999998 78999999999999999999998 99999999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
+++.+.
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987653
No 64
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=128.37 Aligned_cols=81 Identities=20% Similarity=0.339 Sum_probs=76.4
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhc-CCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCce-eCCcee-Ee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQ-FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIE-FNDYDV-VD 158 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~-~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~-i~G~~i-v~ 158 (168)
.+.++|||+|||+ +++++|+++|++ ||.|..+.+++++ +|+++|||||+|.+.++|.+|++ +++.. +.|++| |.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 4568999999999 999999999999 9999999999998 89999999999999999999998 99999 999999 99
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
++.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9987764
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.4e-22 Score=128.01 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=75.8
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCC---CCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~---tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
+.++|||+|||+ +++++|+++|++||.|..+.+++++. |++++|||||+|.+.++|.+|++ +++..+.|++| |+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458999999999 99999999999999999999999876 66899999999999999999998 99999999999 99
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9988754
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.88 E-value=2e-22 Score=125.08 Aligned_cols=78 Identities=23% Similarity=0.436 Sum_probs=74.9
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeeccc
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~~ 163 (168)
.++|||+|||+ +++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|+.+++..+.|++| |.+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 47999999999 999999999999999999999999889999999999999999999999999999999999 9999874
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.88 E-value=1.6e-22 Score=134.01 Aligned_cols=82 Identities=30% Similarity=0.431 Sum_probs=77.9
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+||+ +++..|+|++| |++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44668999999999 9999999999999999999999999999999999999999999999998 99999999999 999
Q ss_pred ecccc
Q psy40 160 IVCKY 164 (168)
Q Consensus 160 a~~~~ 164 (168)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98875
No 68
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.4e-22 Score=131.96 Aligned_cols=83 Identities=24% Similarity=0.471 Sum_probs=78.3
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
...++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+||+.++..|.|+.| |.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 3458999999999 999999999999999999999999989999999999999999999999888899999999 99999
Q ss_pred ccccC
Q psy40 162 CKYNI 166 (168)
Q Consensus 162 ~~~~~ 166 (168)
++.+.
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 98764
No 69
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2e-22 Score=130.54 Aligned_cols=84 Identities=25% Similarity=0.410 Sum_probs=78.4
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEe--------EEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIE--------SVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~--------~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
..+.++|||+|||+ +++++|+++|++||.|. .++++.++.+|+++|||||+|.+.++|.+||+ +++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999 99999999999999999 69999998899999999999999999999998 9999999
Q ss_pred Ccee-EeeecccccC
Q psy40 153 DYDV-VDKIVCKYNI 166 (168)
Q Consensus 153 G~~i-v~~a~~~~~~ 166 (168)
|+.| |.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 9999 9999987653
No 70
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=7e-22 Score=128.57 Aligned_cols=80 Identities=29% Similarity=0.529 Sum_probs=74.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+||+ +++ .|.|++| |.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44668999999999 9999999999999999999999999999999999999999999999999 776 8999999 999
Q ss_pred eccc
Q psy40 160 IVCK 163 (168)
Q Consensus 160 a~~~ 163 (168)
|.++
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9664
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=137.93 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=75.2
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCC--cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G--~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..++|||+|||+ +++++|+++|++|| .|.+++++.|+.+|+++|||||+|.+.++|.+||+ +++..|+|+.| |++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999 99999999999999 99999999999999999999999999999999998 89999999999 999
Q ss_pred ecccc
Q psy40 160 IVCKY 164 (168)
Q Consensus 160 a~~~~ 164 (168)
|.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-22 Score=128.51 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=69.9
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC--CceeCCcee-E
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA--FIEFNDYDV-V 157 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~--~~~i~G~~i-v 157 (168)
+.+.++|||+|||+ +|+++|+++|++||.|.+++++++ ||||||+|++.++|.+|++ ++ +..|.|++| |
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 44668999999999 999999999999999999999875 6899999999999999998 65 478999999 9
Q ss_pred eeeccccc
Q psy40 158 DKIVCKYN 165 (168)
Q Consensus 158 ~~a~~~~~ 165 (168)
.+|+++..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99988753
No 73
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.88 E-value=7.3e-23 Score=123.19 Aligned_cols=73 Identities=37% Similarity=0.709 Sum_probs=70.5
Q ss_pred EEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
+|||+|||+ +++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+++++..++|++| |++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999 999999999999999999999999989999999999999999999999999999999999 9886
No 74
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.88 E-value=6.8e-23 Score=136.20 Aligned_cols=83 Identities=16% Similarity=0.317 Sum_probs=76.9
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeE--EEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCc----eeCC
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--VNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFI----EFND 153 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~--v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~----~i~G 153 (168)
.....++|||+|||+ +|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+. +++. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 345678999999999 999999999999999976 99999999999999999999999 9999998 9999 9999
Q ss_pred cee-Eeeeccccc
Q psy40 154 YDV-VDKIVCKYN 165 (168)
Q Consensus 154 ~~i-v~~a~~~~~ 165 (168)
+.| |++++++..
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 999 999988643
No 75
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.88 E-value=5.1e-22 Score=129.56 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.++|||+|||+ +++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|.+|++ +++..++|++| |+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345668999999999 9999999999999999999999999899999999999999999999998 99999999999 99
Q ss_pred eec
Q psy40 159 KIV 161 (168)
Q Consensus 159 ~a~ 161 (168)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 76
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=124.55 Aligned_cols=81 Identities=20% Similarity=0.432 Sum_probs=75.3
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCC-ceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGA-KRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~-~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
..++|||+|||+ +++++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|.+|++ +++..++|+.| |+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357999999999 99999999999999999999999987666 89999999999999999998 99999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.|...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 77
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.9e-23 Score=131.10 Aligned_cols=81 Identities=27% Similarity=0.526 Sum_probs=76.9
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
+.++|||+|||+ +++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++ +++..+.|+.| |.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 458999999999 9999999999999999999999998899999999999999999999998 99999999999 99998
Q ss_pred cccc
Q psy40 162 CKYN 165 (168)
Q Consensus 162 ~~~~ 165 (168)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 8754
No 78
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.88 E-value=6.9e-23 Score=130.05 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=75.3
Q ss_pred CCcEEEEeCCCC-------CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC-ce
Q psy40 85 TVKKMFVGGLKD-------QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND-YD 155 (168)
Q Consensus 85 ~~~~l~V~nlp~-------~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G-~~ 155 (168)
.+++|||+|||+ +++++|+++|++||.|.++++++|+.||+++|||||+|.+.++|.+||+ +++..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 458999999996 4678999999999999999999999999999999999999999999998 99999999 99
Q ss_pred e-Eeeeccccc
Q psy40 156 V-VDKIVCKYN 165 (168)
Q Consensus 156 i-v~~a~~~~~ 165 (168)
| |++|.|++.
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 9 999988753
No 79
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-22 Score=131.66 Aligned_cols=82 Identities=20% Similarity=0.394 Sum_probs=77.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
...++|||+|||+ +++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+||.+++..|.|+.| |.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 3458999999999 999999999999999999999999999999999999999999999999999999999999 99998
Q ss_pred cccc
Q psy40 162 CKYN 165 (168)
Q Consensus 162 ~~~~ 165 (168)
++..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7653
No 80
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-21 Score=124.12 Aligned_cols=82 Identities=24% Similarity=0.458 Sum_probs=75.4
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.++|||+|||+ +++++|+++|++||.|..+.+++++. .++|||||+|.+.++|.+|++ +++..|+|+.| |.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345668999999999 99999999999999999999999864 489999999999999999998 99999999999 99
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988764
No 81
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=3.6e-22 Score=131.75 Aligned_cols=84 Identities=18% Similarity=0.413 Sum_probs=78.2
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.++|||+|||+ +++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ +++..|.|+.| |.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 344568999999999 9999999999999999999999999899999999999999999999998 99999999999 99
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
+|.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9987653
No 82
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=129.58 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=76.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...++|||+|||+ +++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|.+|++ +++..++|+.| |.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3458999999999 9999999999999999999999998 89999999999999999999998 99999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
+++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.2e-22 Score=128.18 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=75.7
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCc-EeEEEEe-ccCCCCCceeEEEEEEcCHHHHHHHHh-hC--CceeCCcee-E
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMV-TNKETGAKRGFAFIEFNDYDVVDKIRG-FA--FIEFNDYDV-V 157 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~-v~~v~i~-~d~~tg~~~g~afV~f~~~~~a~~ai~-~~--~~~i~G~~i-v 157 (168)
+.++|||+|||+ +++++|+++|++||. |..+.++ .++.+|.++|||||+|.+.++|.+|++ ++ +..+.|+.| |
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 458999999999 999999999999998 9999998 888889999999999999999999998 86 589999999 9
Q ss_pred eeeccccc
Q psy40 158 DKIVCKYN 165 (168)
Q Consensus 158 ~~a~~~~~ 165 (168)
.+|.|+.+
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99998765
No 84
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=9.4e-22 Score=131.84 Aligned_cols=83 Identities=22% Similarity=0.407 Sum_probs=78.4
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
....++|||+|||+ +++++|+++|+.||.|.+|.+++++.+|+++|||||+|.+.++|.+|++ +++..|.|+.| |.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999 9999999999999999999999999899999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
|+++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 988764
No 85
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=7.5e-22 Score=123.23 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++++ +|+++|||||+|.+.++|.+|++ +++..+.|+.| |++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999 999999999999999999999985 78999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 988754
No 86
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=122.37 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=75.5
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
...++|||+|||+ +++++|+++|++| .|..++++++ .+|+++|||||+|.+.++|.+|+.+++..+.|+.| |.+|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 4568999999999 9999999999999 9999999999 68999999999999999999999999999999999 99999
Q ss_pred cccc
Q psy40 162 CKYN 165 (168)
Q Consensus 162 ~~~~ 165 (168)
++.+
T Consensus 86 ~~~~ 89 (91)
T 2dgw_A 86 SGPS 89 (91)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8865
No 87
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=124.05 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..|.+++++. .++|||||+|.+.++|.+|++ +++..+.|+.| |.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44568999999999 99999999999999999999999864 368999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 988654
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.8e-22 Score=124.52 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCC-CCHHHHH----HHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-
Q psy40 84 ATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV- 156 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~----~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i- 156 (168)
...++|||+|||+ +++++|+ ++|++||.|.++++++|+.+ +|||||+|.+.++|.+|++ +++..++|++|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3457999999999 9999999 99999999999999999864 8899999999999999998 99999999999
Q ss_pred Eeeeccccc
Q psy40 157 VDKIVCKYN 165 (168)
Q Consensus 157 v~~a~~~~~ 165 (168)
|++|+++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999988764
No 89
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=6.5e-22 Score=124.22 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=74.1
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|.++.+++++. |+++|||||+|.+.++|.+|++ +++..+.|++| |++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999 99999999999999999999999985 9999999999999999999998 99999999999 999
Q ss_pred ecc
Q psy40 160 IVC 162 (168)
Q Consensus 160 a~~ 162 (168)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=2.2e-22 Score=134.39 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=77.5
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+|++ +++..|.|++| |++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999 9999999999999999999999999899999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 91
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=6.2e-22 Score=127.92 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCcEEEEeCCCC-CCHHHHH---HHHhcCCcEeEEEEeccCCCC---CceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 85 TVKKMFVGGLKD-QEEDDLR---EYFSQFGTIESVNMVTNKETG---AKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~---~~F~~~G~v~~v~i~~d~~tg---~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
..++|||+|||+ +++++|+ ++|++||.|..+.+++++.++ +++|||||+|.+.++|.+||+ |++..|+|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 457999999999 9999999 999999999999999998754 556999999999999999998 99999999999
Q ss_pred -EeeecccccC
Q psy40 157 -VDKIVCKYNI 166 (168)
Q Consensus 157 -v~~a~~~~~~ 166 (168)
|.+|.++...
T Consensus 94 ~V~~a~~k~~~ 104 (111)
T 2cpi_A 94 KASLGTTKYCS 104 (111)
T ss_dssp EEESCCCCSCS
T ss_pred EEEeccccccc
Confidence 9999998743
No 92
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=1.6e-21 Score=125.11 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|.+|++ +++..+.|++| |++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44668999999999 9999999999999999999999998 89999999999999999999999 99999999999 999
Q ss_pred ec
Q psy40 160 IV 161 (168)
Q Consensus 160 a~ 161 (168)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 93
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=1.6e-21 Score=133.16 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=77.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+||+ +++..|.|+.| |.+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999 9999999999999999999999999999999999999999999999998 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.++.
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 94
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4e-22 Score=129.41 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=75.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcE-eEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTI-ESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v-~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.| ..|+++.|+ +|+++|||||+|.+.++|.+||++++..|.|+.| |.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 34568999999999 9999999999999999 899999998 8999999999999999999999999999999999 999
Q ss_pred ecccc
Q psy40 160 IVCKY 164 (168)
Q Consensus 160 a~~~~ 164 (168)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 95
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=124.57 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeE-EEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIES-VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~-v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
...++|||+|||+ +++++|+++|++||.|.. +.++.+ .+|+++|||||+|.+.++|.+||+.++..+.||.| |.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 3568999999999 999999999999999987 889888 68999999999999999999999988999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7764
No 96
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=4.7e-22 Score=125.59 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=75.5
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...++|||+|||+ +++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++ +++..|.|++| |+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3458999999999 9999999999999999988889988899999999999999999999997 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.++.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7653
No 97
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-22 Score=124.21 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=73.6
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.+ ++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3568999999999 9999999999999999999999999899999999999999999999998 99999999998 8876
Q ss_pred c
Q psy40 161 V 161 (168)
Q Consensus 161 ~ 161 (168)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 98
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.87 E-value=1.3e-22 Score=126.19 Aligned_cols=78 Identities=26% Similarity=0.507 Sum_probs=71.1
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeeccc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~ 163 (168)
++|||+|||+ +++++|+++|++||.|.++.+++++.+|.++|||||+|.+.+ |.+|+. +++..++|++| |++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999 999999999999999999999999999999999999999999 999998 99999999999 9999876
Q ss_pred cc
Q psy40 164 YN 165 (168)
Q Consensus 164 ~~ 165 (168)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.87 E-value=9.1e-22 Score=125.92 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=73.2
Q ss_pred CCCcEEEEeCCCC-C------CHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCc-
Q psy40 84 ATVKKMFVGGLKD-Q------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDY- 154 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~------t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~- 154 (168)
...++|||+|||+ + ++++|+++|++||.|.++.+++ .+|+++|||||+|.+.++|.+|+. +++..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 3468999999999 9 7899999999999999999983 578999999999999999999998 999999998
Q ss_pred ee-Eeeeccccc
Q psy40 155 DV-VDKIVCKYN 165 (168)
Q Consensus 155 ~i-v~~a~~~~~ 165 (168)
+| |.++.+.+.
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 99 999987654
No 100
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=8.6e-22 Score=133.70 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=93.3
Q ss_pred ceeEEEecCCccchHHHHHh-hhhhhccCCCCCCCCCCC----------cccCCCCCCCCCcEEEEeCCCC-CCHHHHHH
Q psy40 37 GVLEVVTTRPTINNKAMEEA-QSEEEVDMEIPGPPHMDK----------LEIGKPEANATVKKMFVGGLKD-QEEDDLRE 104 (168)
Q Consensus 37 ~~~~v~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~V~nlp~-~t~~~L~~ 104 (168)
+.+.+.+.++..+.+++..+ ++..... .+....+..+ ..........+.++|||+|||+ +++++|++
T Consensus 14 G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~ 92 (150)
T 2i2y_A 14 GETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELER 92 (150)
T ss_dssp EEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHH
T ss_pred ccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 34566688888889988877 4433222 2211111110 1112233445678999999999 99999999
Q ss_pred HHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecccc
Q psy40 105 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCKY 164 (168)
Q Consensus 105 ~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~~ 164 (168)
+|++||.|.+++++++ ++|||||+|.+.++|.+|++ +++..+.|++| |.++.|+.
T Consensus 93 ~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 93 AFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999876 47899999999999999998 99999999999 99998874
No 101
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-21 Score=125.38 Aligned_cols=80 Identities=15% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee--------C
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF--------N 152 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i--------~ 152 (168)
....++|||+|||+ +++++|+++|++||.|..+++++++ +|.++|||||+|.+.++|.+|++ +++..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34568999999999 9999999999999999999999998 89999999999999999999998 999999 5
Q ss_pred Ccee-Eeeeccc
Q psy40 153 DYDV-VDKIVCK 163 (168)
Q Consensus 153 G~~i-v~~a~~~ 163 (168)
|++| |++|.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 7889 9999876
No 102
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.87 E-value=1.8e-22 Score=121.44 Aligned_cols=73 Identities=34% Similarity=0.657 Sum_probs=70.3
Q ss_pred EEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 88 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 88 ~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
+|||+|||+ +++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++++++.+.|++| |++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999 999999999999999999999999989999999999999999999999988899999999 9876
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-22 Score=121.38 Aligned_cols=73 Identities=34% Similarity=0.571 Sum_probs=69.9
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
++|||+|||+ +++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++ ++ ..++|++| |++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999 9999999999999999999999999899999999999999999999999 66 99999999 9987
No 104
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.3e-21 Score=124.40 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|.+|++ +++..|.|+.| |++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34568999999999 9999999999999999999999998 59999999999999999999998 99999999999 999
Q ss_pred eccc
Q psy40 160 IVCK 163 (168)
Q Consensus 160 a~~~ 163 (168)
+.+.
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8643
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=122.92 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=68.3
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCc--eeCCcee-E
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFI--EFNDYDV-V 157 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~--~i~G~~i-v 157 (168)
..++++|||+|||+ +|+++|+++|++||.|.++.++++ ||||||+|++.++|.+|++ +++. .+.|++| |
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34678999999999 999999999999999999999853 6799999999999999998 7765 4889999 9
Q ss_pred eeecccc
Q psy40 158 DKIVCKY 164 (168)
Q Consensus 158 ~~a~~~~ 164 (168)
.+|++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998874
No 106
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.8e-22 Score=125.34 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
...++|||+|||+ +|+++|+++|++||. ..|+++.|+ +|+++|||||+|.+.++|.+||++++..|.||.| |.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 3458999999999 999999999999995 499999998 8999999999999999999999999999999999 99987
Q ss_pred ccc
Q psy40 162 CKY 164 (168)
Q Consensus 162 ~~~ 164 (168)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 107
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=2.1e-21 Score=133.85 Aligned_cols=84 Identities=20% Similarity=0.384 Sum_probs=77.3
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.++|||+|||+ +++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|.+||. +++..|.|+.| |.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344568999999999 9999999999999999999999999899999999999999999999998 99999999999 99
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
+|.++..
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9987653
No 108
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5e-21 Score=123.19 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.++|||+|||+ +++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|++ +++..|.|+.| |+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345668999999999 999999999999999999999654 5689999999999999999997 99999999999 99
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
+++++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9988754
No 109
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-22 Score=129.04 Aligned_cols=83 Identities=17% Similarity=0.311 Sum_probs=76.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
....++|||+|||+ +++++|+++|++||.|.. .++.++.+|+++|||||+|.+.++|.+||++++..+.|+.| |.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 34568999999999 999999999999999888 77788778999999999999999999999999999999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
.++.+.
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 988653
No 110
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=7.6e-21 Score=125.08 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=77.0
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.++|||+|||+ +++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|.+|++ +++..+.|++| |.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345668999999999 9999999999999999999999998 89999999999999999999998 99999999999 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
+|.+..
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 998764
No 111
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.86 E-value=4.5e-22 Score=126.60 Aligned_cols=81 Identities=27% Similarity=0.628 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
...++|||+|||+ +++++|+++|++||.|..+.+++++ +|+++|||||+|.+.++|.+|++ +++.++|+.| |.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 3458999999999 9999999999999999999999998 89999999999999999999999 8899999999 99998
Q ss_pred ccccC
Q psy40 162 CKYNI 166 (168)
Q Consensus 162 ~~~~~ 166 (168)
++.++
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 77653
No 112
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=126.29 Aligned_cols=82 Identities=24% Similarity=0.460 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 81 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 81 ~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
......++|||+|||+ +++++|+++|++||.|..+.+++++ +.++|||||+|.+.++|.+|++ +++..++|++| |
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999 9999999999999999999999985 3589999999999999999998 99999999999 9
Q ss_pred eeecccc
Q psy40 158 DKIVCKY 164 (168)
Q Consensus 158 ~~a~~~~ 164 (168)
++|+++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998873
No 113
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=1.8e-21 Score=128.07 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=75.8
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
..++|||+|||+ +++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|+++++..|.|+.| |.++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 458999999999 999999999999999999999999889999999999999999999999999999999999 999976
Q ss_pred cc
Q psy40 163 KY 164 (168)
Q Consensus 163 ~~ 164 (168)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 114
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.86 E-value=1.7e-21 Score=127.22 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCc---EeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Ee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VD 158 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~---v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~ 158 (168)
...++|||+|||+ +|+++|+++|++||. |..|+++.++. |+++|||||+|.+.++|.+||++++..|+||.| |.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 4568999999999 999999999999999 89999999986 999999999999999999999999999999999 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
++.+++
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987653
No 115
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=6.1e-22 Score=124.36 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
..++|||+|||+ +++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++ +++..|.|++| |.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 358999999999 9999999999999999999999998899999999999999999999998 99999999999 99886
Q ss_pred c
Q psy40 162 C 162 (168)
Q Consensus 162 ~ 162 (168)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 116
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=127.79 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCC-CCHHHHH----HHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-
Q psy40 84 ATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV- 156 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~----~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i- 156 (168)
.+.++|||+|||+ +++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++ +++..+.|++|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 4568999999999 9999876 6999999999998854 57899999999999999999998 99999999999
Q ss_pred Eeeeccccc
Q psy40 157 VDKIVCKYN 165 (168)
Q Consensus 157 v~~a~~~~~ 165 (168)
|.+|+++.+
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999988754
No 117
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.86 E-value=8.5e-22 Score=131.37 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCc---EeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Ee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VD 158 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~---v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~ 158 (168)
...++|||+|||+ +|+++|+++|++||. |..|++++|+. |+++|||||+|++.++|.+||++++..|+||.| |.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 3458999999999 999999999999999 89999999986 999999999999999999999999999999999 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
++.+++
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 997654
No 118
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.86 E-value=5.8e-21 Score=127.97 Aligned_cols=79 Identities=27% Similarity=0.440 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
...+.++|||+|||+ +++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++ +++..+.|++| |+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999 9999999999999999999999998899999999999999999999997 99999999999 98
Q ss_pred ee
Q psy40 159 KI 160 (168)
Q Consensus 159 ~a 160 (168)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 119
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.1e-22 Score=130.04 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
....++|||+|||+ +++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+||++++..|+|+.| |.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34568999999999 999999999999999998767777779999999999999999999999999999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.+++
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8764
No 120
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=125.83 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
...+|||+|||+ +++++|+++|++| .|.+|+|+.|+. |+++|||||+|.+.++|.+||.++++.|+||.| |..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 347999999999 9999999999999 899999999985 999999999999999999999999999999999 998876
Q ss_pred cc
Q psy40 163 KY 164 (168)
Q Consensus 163 ~~ 164 (168)
++
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 121
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=121.22 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=68.4
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-h--CCceeCCcee-Ee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-F--AFIEFNDYDV-VD 158 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~--~~~~i~G~~i-v~ 158 (168)
.++++|||+|||+ +++++|+++|++||.|.++.++++ +|||||+|++.++|.+|++ + ++..+.|++| |.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 4668999999999 999999999999999999999865 6899999999999999998 5 4678999999 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
+|+++.
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 998865
No 122
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-21 Score=125.29 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC--CceeCCcee-E
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA--FIEFNDYDV-V 157 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~--~~~i~G~~i-v 157 (168)
..++++|||+|||+ +++++|+++|++||.|.+++++++ +|||||+|++.++|.+|++ ++ +..+.|++| |
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 34568999999999 999999999999999999999875 6899999999999999998 66 468999999 9
Q ss_pred eeeccccc
Q psy40 158 DKIVCKYN 165 (168)
Q Consensus 158 ~~a~~~~~ 165 (168)
.+|+++..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99988753
No 123
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=121.04 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|++ +++..|.|+.| |.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 44678999999999 9999999999999987 56666 578999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
+.++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988764
No 124
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.85 E-value=9.5e-22 Score=126.24 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCc---EeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Ee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VD 158 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~---v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~ 158 (168)
...++|||+|||+ +|+++|+++|++||. |..|+++.|+. |+++|||||+|.+.++|.+||++++..++|+.| |.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 4568999999999 999999999999998 89999999987 999999999999999999999999999999999 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
++.+++
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 998754
No 125
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.1e-21 Score=120.50 Aligned_cols=81 Identities=28% Similarity=0.434 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++|+ .+.++.++.+++++|||||+|.+.++|.+||+ +++..|.|+.| |.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34668999999999 99999999999874 67788888889999999999999999999998 99999999999 999
Q ss_pred ecccccC
Q psy40 160 IVCKYNI 166 (168)
Q Consensus 160 a~~~~~~ 166 (168)
|+++.+.
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9998764
No 126
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=118.06 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=65.0
Q ss_pred cEEEEeCCCC-C------CHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCc-ee-
Q psy40 87 KKMFVGGLKD-Q------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDY-DV- 156 (168)
Q Consensus 87 ~~l~V~nlp~-~------t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~-~i- 156 (168)
++|||+|||+ + ++++|+++|++||.|.++.+++ .+|+++|||||+|.+.++|.+|++ +++..++|+ +|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 6899999999 9 7899999999999999999883 478999999999999999999998 999999999 87
Q ss_pred Ee
Q psy40 157 VD 158 (168)
Q Consensus 157 v~ 158 (168)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 127
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7e-21 Score=121.41 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=68.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCC--ceeCCcee-E
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAF--IEFNDYDV-V 157 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~--~~i~G~~i-v 157 (168)
..++++|||+|||+ +++++|+++|++||.|.++.++++ ||||||+|++.++|.+|++ +++ ..+.|++| |
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34568999999999 999999999999999999999864 6899999999999999998 654 46999999 9
Q ss_pred eeecccc
Q psy40 158 DKIVCKY 164 (168)
Q Consensus 158 ~~a~~~~ 164 (168)
.+++++.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9998765
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-21 Score=126.66 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999 9999999999999998433222222268899999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
|.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 988765
No 129
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=3.1e-21 Score=139.48 Aligned_cols=79 Identities=19% Similarity=0.361 Sum_probs=74.4
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCC--cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G--~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..++|||+|||+ +|+++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|.+||+ |++..|.|+.| |++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 557899999999 99999999999999 99999999999999999999999999999999998 99999999999 999
Q ss_pred eccc
Q psy40 160 IVCK 163 (168)
Q Consensus 160 a~~~ 163 (168)
|.++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 130
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=7.7e-21 Score=116.03 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=67.2
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
..+.-|||+||++ +|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++ ||+.++.|+.| |++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3457899999999 99999999999999999999865 58999999999999999998 99999999999 9999
Q ss_pred c
Q psy40 161 V 161 (168)
Q Consensus 161 ~ 161 (168)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.85 E-value=3.4e-21 Score=126.67 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEe--EEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIE--SVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDK 159 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~--~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~ 159 (168)
...++|||+|||+ +|+++|+++|++| .|. +|+|+.|+. |+++|||||+|.+.++|.+||+.++..|+||.| |.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 3458999999999 9999999999999 676 999999986 999999999999999999999988899999999 999
Q ss_pred ecccc
Q psy40 160 IVCKY 164 (168)
Q Consensus 160 a~~~~ 164 (168)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 132
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=126.42 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=72.4
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcE----eEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Ee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTI----ESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VD 158 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v----~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~ 158 (168)
...+|||+|||+ +|+++|+++|++||.| ..|.|+.|+ +|+++|||||+|.+.++|.+||+.+++.+.||.| |.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999 9999999999999975 689999985 8999999999999999999999989999999999 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
.+.+++
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887653
No 133
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.3e-20 Score=116.88 Aligned_cols=77 Identities=22% Similarity=0.407 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC--Ccee-Ee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN--DYDV-VD 158 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~--G~~i-v~ 158 (168)
.+.++|||+|||+ +++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++ +++..+. |++| |.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 4568999999999 999999999999999999999754 6799999999999999998 9999999 9999 99
Q ss_pred eecccccC
Q psy40 159 KIVCKYNI 166 (168)
Q Consensus 159 ~a~~~~~~ 166 (168)
+++++...
T Consensus 89 ~a~~~~~~ 96 (97)
T 1why_A 89 FAKSGPSS 96 (97)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99998653
No 134
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=115.65 Aligned_cols=74 Identities=18% Similarity=0.475 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +++++|+++|++||.|..+.++ +|||||+|.+.++|.+|++ +++..+.|++| |+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 4568999999999 9999999999999999999987 5799999999999999997 99999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
+++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88764
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=1.9e-20 Score=134.00 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=75.1
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +|+++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|.+||+ +++..+.|+.+ +.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4568999999999 9999999999999999999999999999999999999999999999998 99999999999 9988
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.+..
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6643
No 136
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=119.07 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC-----cee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND-----YDV 156 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G-----~~i 156 (168)
...++|||+|||+ +++++|+++|++||.|..+.++.+ |||||+|.+.++|.+||+ +++..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 3568999999999 999999999999999999999876 799999999999999998 99999999 999
Q ss_pred -Eeeeccccc
Q psy40 157 -VDKIVCKYN 165 (168)
Q Consensus 157 -v~~a~~~~~ 165 (168)
|++|.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 999988753
No 137
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=8.4e-21 Score=120.42 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCC--ceeCCcee-E
Q psy40 84 ATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAF--IEFNDYDV-V 157 (168)
Q Consensus 84 ~~~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~--~~i~G~~i-v 157 (168)
.++++|||+|||+ +++++|+++|++||.|.++.++++ +|||||+|++.++|.+|++ +++ ..|.|++| |
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3568999999998 999999999999999999999875 4799999999999999998 764 56999999 9
Q ss_pred eeecccccC
Q psy40 158 DKIVCKYNI 166 (168)
Q Consensus 158 ~~a~~~~~~ 166 (168)
.+|+++..+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999876554
No 138
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-22 Score=131.69 Aligned_cols=83 Identities=27% Similarity=0.453 Sum_probs=77.7
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeE--------EEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND 153 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~--------v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G 153 (168)
.+.++|||+|||+ +++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|++ +++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 3568999999999 999999999999999998 9999998899999999999999999999998 99999999
Q ss_pred cee-EeeecccccC
Q psy40 154 YDV-VDKIVCKYNI 166 (168)
Q Consensus 154 ~~i-v~~a~~~~~~ 166 (168)
++| |.++.++.+.
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 999 9999987653
No 139
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.84 E-value=1.8e-20 Score=121.63 Aligned_cols=78 Identities=12% Similarity=0.239 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.++++|||+|||+ +++++|+++|++||.|.++.++++ +.++|||||+|.+.++|.+|++ +++..+.|+.| |.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3568999999999 999999999999999999999875 4568999999999999999998 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8753
No 140
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=118.36 Aligned_cols=78 Identities=18% Similarity=0.396 Sum_probs=71.4
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 34568999999999 999999999999999999999854 6799999999999999997 99999999999 999
Q ss_pred ecccccC
Q psy40 160 IVCKYNI 166 (168)
Q Consensus 160 a~~~~~~ 166 (168)
++++..+
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9987654
No 141
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=5.9e-21 Score=120.25 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=72.9
Q ss_pred CCCcEEEEeCCCC-CCHHHHH----HHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-
Q psy40 84 ATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV- 156 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~----~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i- 156 (168)
.++++|||+|||+ +++++|+ ++|++||.|..+.+++ +|.++|||||+|.+.++|.+|++ +++..+.|++|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 4568999999999 9999999 9999999999999874 57889999999999999999998 99999999999
Q ss_pred Eeeeccccc
Q psy40 157 VDKIVCKYN 165 (168)
Q Consensus 157 v~~a~~~~~ 165 (168)
|.++.++.+
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999998764
No 142
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=119.82 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...++|||+|||+ +++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|+. +++..+.|++| |.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 4568999999999 999999999999999999999876 6799999999999999997 99999999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
+++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 987653
No 143
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=118.37 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=70.6
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999 9999999999999988766 2368899999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 988764
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.9e-20 Score=118.84 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
..++|||+|||+ +++++|+++|++||.|.++++++ ++|||||+|.+.++|.+|++ +++..++|+.| |++|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 458999999999 99999999999999999999973 47899999999999999998 99999999999 99998
Q ss_pred cc
Q psy40 162 CK 163 (168)
Q Consensus 162 ~~ 163 (168)
+|
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 145
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.83 E-value=1.8e-20 Score=116.34 Aligned_cols=77 Identities=25% Similarity=0.405 Sum_probs=61.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
..+..+|||+|||+ +|+++|+++|++||.|.+++++++ ++|||||+|++.++|.++. .....+.|++| |++|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEc
Confidence 34568999999999 999999999999999999999874 6899999999999998533 22455679999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.|+.+
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 98864
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=113.00 Aligned_cols=73 Identities=30% Similarity=0.459 Sum_probs=67.4
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-h-CCceeCCcee-Ee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-F-AFIEFNDYDV-VD 158 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~-~~~~i~G~~i-v~ 158 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++ + ++..+.|++| |+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34568999999999 999999999999999999999864 6899999999999999998 8 8999999999 99
Q ss_pred eec
Q psy40 159 KIV 161 (168)
Q Consensus 159 ~a~ 161 (168)
+|+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 147
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.83 E-value=3.5e-20 Score=130.42 Aligned_cols=82 Identities=24% Similarity=0.454 Sum_probs=75.9
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
....++|||+|||+ +|+++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+||+.++..+.|+.| |.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 34568999999999 999999999999999999999999989999999999999999999999988999999999 9998
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.++.
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7654
No 148
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=116.36 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...++|||+|||+ +++++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++ +++..+.|++| |+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999999 99999999999999997 66765 3568999999999999999997 99999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 149
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=1.5e-20 Score=147.33 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=77.3
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
.+.++|||+|||+ +|+++|+.+|++||.|..|.|+.++.+|+++|||||+|.+.++|.+||. |++..|.|+.| |.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999 9999999999999999999999999899999999999999999999997 99999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87653
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=6.7e-20 Score=125.59 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=75.6
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecc
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~ 162 (168)
+++|||+|||+ +++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++ +++..+.|++| |.++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999 9999999999999999999999999899999999999999999999998 99999999999 999987
Q ss_pred cc
Q psy40 163 KY 164 (168)
Q Consensus 163 ~~ 164 (168)
+.
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 151
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=2.1e-20 Score=120.40 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...+|||+|||+ +++++|+++|++|| +|..+.++.+ +++|||||+|.+.++|++||+ +++..++|+.| |+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457999999999 99999999999999 9999988643 478999999999999999998 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.+++
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7653
No 152
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.83 E-value=4.3e-21 Score=128.38 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeec
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~ 161 (168)
...++|||+|||+ +|+++|+++|++|| +.+|+|+.|+. |+++|||||+|++.++|++||++++..|.||.| |..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4557999999999 99999999999999 77999999985 999999999999999999999999999999999 99988
Q ss_pred ccc
Q psy40 162 CKY 164 (168)
Q Consensus 162 ~~~ 164 (168)
++.
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 153
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=7.1e-20 Score=116.61 Aligned_cols=75 Identities=28% Similarity=0.381 Sum_probs=69.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.++ +|||||+|.+.++|.+|++ +++..|.|+.| |.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34568999999999 9999999999999999999986 3599999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++.+
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 988764
No 154
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=3.7e-20 Score=118.95 Aligned_cols=75 Identities=24% Similarity=0.394 Sum_probs=69.4
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
....++|||+|||+ +++++|+++|++||.|..+.++ +|||||+|.+.++|.+|++ +++..++|+.| |.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45668999999999 9999999999999999999987 6799999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 988764
No 155
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=113.16 Aligned_cols=75 Identities=17% Similarity=0.359 Sum_probs=69.0
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++ +||||+|.+.++|.+|++ +++..+.|+.| |++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34568999999999 99999999999999999999973 399999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 988754
No 156
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=113.94 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=69.4
Q ss_pred CCCCCcEEEEeCCCC-CCHHHHHHHHhcC--CcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-
Q psy40 82 ANATVKKMFVGGLKD-QEEDDLREYFSQF--GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV- 156 (168)
Q Consensus 82 ~~~~~~~l~V~nlp~-~t~~~L~~~F~~~--G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i- 156 (168)
...+.++|||+|||+ +++++|+++|++| |.|..+.++ +|||||+|.+.++|.+|+. +++..+.|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344668999999999 9999999999999 999999874 5699999999999999998 99999999999
Q ss_pred Eeeeccccc
Q psy40 157 VDKIVCKYN 165 (168)
Q Consensus 157 v~~a~~~~~ 165 (168)
|.+++++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999998764
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=4.3e-20 Score=126.84 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=76.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
++++|||+|||+ +++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++ +++..+.|++| |.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 458999999999 9999999999999999999999998899999999999999999999998 99999999999 99998
Q ss_pred ccc
Q psy40 162 CKY 164 (168)
Q Consensus 162 ~~~ 164 (168)
++.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 765
No 158
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=118.41 Aligned_cols=73 Identities=26% Similarity=0.367 Sum_probs=68.9
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeeccc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~ 163 (168)
++|||+|||+ +++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+|++ +++..+.|+.| |.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 4799999999 999999999999999999999876 68899999999999999998 99999999999 9999876
Q ss_pred c
Q psy40 164 Y 164 (168)
Q Consensus 164 ~ 164 (168)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.82 E-value=7.8e-20 Score=127.23 Aligned_cols=82 Identities=18% Similarity=0.315 Sum_probs=76.6
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|.+|++ +++..|+|+.| |.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999 9999999999999999999999998 89999999999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
|.+...
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 987543
No 160
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=112.91 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
..++|||+|||+ +++++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|.+|++++++.|+|+.| |+++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 457999999999 9999999999999999987 56665665 9999999999999999999999999999 999987
Q ss_pred ccc
Q psy40 163 KYN 165 (168)
Q Consensus 163 ~~~ 165 (168)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 161
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=112.28 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=68.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
..+.++|||+|||+ +++++|+++|++||.|..+.+++ +||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999 99999999999999999999973 399999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988754
No 162
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.1e-20 Score=114.77 Aligned_cols=76 Identities=24% Similarity=0.399 Sum_probs=67.7
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCc-EeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCC-ceeCCcee-Ee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAF-IEFNDYDV-VD 158 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~-v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~-~~i~G~~i-v~ 158 (168)
...++|||+|||+ +++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++ +++ ..++|++| |+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 3568999999999 999999999999999 6666552 37899999999999999998 999 99999999 99
Q ss_pred eecccccC
Q psy40 159 KIVCKYNI 166 (168)
Q Consensus 159 ~a~~~~~~ 166 (168)
+++++.+.
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99987654
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=126.42 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEE--------EEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESV--------NMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND 153 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v--------~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G 153 (168)
.++++|||+|||+ +|+++|+++|++||.|..+ ++. .+|+++|||||+|.+.++|.+|+. +++..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 4568999999999 9999999999999998764 332 368999999999999999999998 99999999
Q ss_pred cee-Eeeecccc
Q psy40 154 YDV-VDKIVCKY 164 (168)
Q Consensus 154 ~~i-v~~a~~~~ 164 (168)
++| |.+|+++.
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999 99997754
No 164
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=117.43 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=67.2
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
..++|||+|||+ +++++|+++|++||.|..+.+++ ++|||||+|.+.++|.+|+. +++..+.|++| |.||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 357999999999 99999999999999999999874 46899999999999999998 99999999999 99996
Q ss_pred cc
Q psy40 162 CK 163 (168)
Q Consensus 162 ~~ 163 (168)
.+
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 165
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=113.13 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEE-EeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVN-MVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~-i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
..++|||+|||+ +++++|+++|++||.|..++ ++.++.+| .|||+|.+.++|.+|+. +++..+.|++| |+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 458999999999 99999999999999999994 88876543 39999999999999998 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.|++
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9984
No 166
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=4.6e-19 Score=111.70 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=68.1
Q ss_pred CCCCcEEEEeCCC-C-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 83 NATVKKMFVGGLK-D-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 83 ~~~~~~l~V~nlp-~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
..+.++|||+||| . +++++|+++|++||.|..+++. +|||||+|.+.++|.+|++ +++..+.|++| |+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3467899999999 5 9999999999999999999983 6899999999999999998 99999999999 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
+++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998764
No 167
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=116.22 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=69.1
Q ss_pred CCCCcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC--CceeCCcee-
Q psy40 83 NATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA--FIEFNDYDV- 156 (168)
Q Consensus 83 ~~~~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~--~~~i~G~~i- 156 (168)
..++++|||+|||+ +++++|+++|++||.|.++.++++ +|||||+|++.++|.+|++ ++ +..|.|++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 34678999999998 899999999999999999999753 6899999999999999998 65 456999999
Q ss_pred EeeecccccC
Q psy40 157 VDKIVCKYNI 166 (168)
Q Consensus 157 v~~a~~~~~~ 166 (168)
|.+|+++..+
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999887654
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=109.89 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=64.8
Q ss_pred CCcE-EEEeCCCC-CCHHH----HHHHHhcCC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 85 TVKK-MFVGGLKD-QEEDD----LREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 85 ~~~~-l~V~nlp~-~t~~~----L~~~F~~~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
++.| |||+|||+ +++++ |+++|++|| .|.+| +| |+|||+|.+.++|.+|++ |++..+.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4566 99999999 99988 558999995 99998 34 899999999999999998 99999999999
Q ss_pred -EeeecccccC
Q psy40 157 -VDKIVCKYNI 166 (168)
Q Consensus 157 -v~~a~~~~~~ 166 (168)
|.+|+.+.++
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 9999988765
No 169
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=117.73 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=66.8
Q ss_pred cEEEEeCC----CC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcC----HHH----HHHHHh---hCCce
Q psy40 87 KKMFVGGL----KD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND----YDV----VDKIRG---FAFIE 150 (168)
Q Consensus 87 ~~l~V~nl----p~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~----~~~----a~~ai~---~~~~~ 150 (168)
.+|||+|| |+ +++++|+.+|++||+|.++.++.|+.||.++|||||+|.+ .++ |.+|+. +++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99 9999999999999999999999999999999999999996 333 788875 58999
Q ss_pred eCCcee-Eeeec
Q psy40 151 FNDYDV-VDKIV 161 (168)
Q Consensus 151 i~G~~i-v~~a~ 161 (168)
|+|++| |..-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999 88643
No 170
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=116.41 Aligned_cols=75 Identities=13% Similarity=0.259 Sum_probs=66.9
Q ss_pred CCCcEEEE--eCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee-----CCc
Q psy40 84 ATVKKMFV--GGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF-----NDY 154 (168)
Q Consensus 84 ~~~~~l~V--~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i-----~G~ 154 (168)
.++++||| +||++ +++++|+++|++||+|.++.++++ +|||||+|++.++|.+|++ |++..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45689999 77999 999999999999999999988642 6899999999999999998 999988 688
Q ss_pred ee-Eeeecccc
Q psy40 155 DV-VDKIVCKY 164 (168)
Q Consensus 155 ~i-v~~a~~~~ 164 (168)
+| |.+++..+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99 99987544
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=112.24 Aligned_cols=76 Identities=30% Similarity=0.468 Sum_probs=66.5
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
+.++|||+|||+ +++++|+++|++||.|..++++++ ++|||||+|.+.++|++|+.. ...+.|++| |.++.|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 458999999999 999999999999999999999865 589999999999999876543 466799999 999998
Q ss_pred cccC
Q psy40 163 KYNI 166 (168)
Q Consensus 163 ~~~~ 166 (168)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=115.93 Aligned_cols=75 Identities=25% Similarity=0.430 Sum_probs=64.7
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCC---CCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~t---g~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
...++|||+|||+ +++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+||+ + +.++|+.+ +
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEEe
Confidence 3458999999999 99999999999999999 889988877 7999999999999999999998 6 34666666 5
Q ss_pred eeec
Q psy40 158 DKIV 161 (168)
Q Consensus 158 ~~a~ 161 (168)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 173
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=6.6e-19 Score=120.04 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCC--cee-Eee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND--YDV-VDK 159 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G--~~i-v~~ 159 (168)
...+|||+||++ +|+++|+++|++||+|.+|.+..+ .++|||||+|.+.++|++|++ +++..|.| +.| |.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 446799999999 999999999999999999998754 257899999999999999998 99999965 999 999
Q ss_pred ecccc
Q psy40 160 IVCKY 164 (168)
Q Consensus 160 a~~~~ 164 (168)
|+++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 99874
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.79 E-value=2e-19 Score=123.51 Aligned_cols=79 Identities=30% Similarity=0.577 Sum_probs=73.4
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
++++|||+|||+ +|+++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++. ++.++|+.| +.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 458999999999 99999999999999999999999998999999999999999999999983 578999999 999877
Q ss_pred cc
Q psy40 163 KY 164 (168)
Q Consensus 163 ~~ 164 (168)
+.
T Consensus 81 ~~ 82 (167)
T 2cjk_A 81 RD 82 (167)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 175
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-18 Score=108.63 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=68.5
Q ss_pred CCCCcEEEEeCCCCCCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
..+.++|||+|+ .+++++|+++|++||.|..+.+. +++|||||+|.+.++|.+||+ +++..+.|++| |.++
T Consensus 12 ~~~~~~l~V~n~-~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS-SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC-CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 345689999993 39999999999999999999984 457899999999999999997 99999999999 9999
Q ss_pred cccccC
Q psy40 161 VCKYNI 166 (168)
Q Consensus 161 ~~~~~~ 166 (168)
.++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 887653
No 176
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=3.7e-19 Score=110.11 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
..++|||+|||+ +++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++ +++..+.|++| |+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 457899999999 9999999999999 99999884 568999999999999999998 99999999999 99996
Q ss_pred ccc
Q psy40 162 CKY 164 (168)
Q Consensus 162 ~~~ 164 (168)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7e-19 Score=120.36 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=71.7
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeeccc
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVCK 163 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~~ 163 (168)
++|||+|||+ +++++|+++|++||.|.++.+++++ +++++|||||+|.+.++|.+|++ +++..+.|++| |.++.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999 9999999999999999999999997 47899999999999999999996 99999999999 9999766
Q ss_pred c
Q psy40 164 Y 164 (168)
Q Consensus 164 ~ 164 (168)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.78 E-value=1e-18 Score=123.24 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeecc
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~ 162 (168)
..++|||+|||+ +++++|+++|++||.|..|+++++. +|.++|||||+|++.++|.+|+...+..++|++| |.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 358999999999 9999999999999999999999987 5899999999999999999999966679999999 998764
No 179
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.3e-19 Score=110.53 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=67.4
Q ss_pred CCCcEEEEeCCC-C-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 84 ATVKKMFVGGLK-D-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 84 ~~~~~l~V~nlp-~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
.+.++|||+||| . +++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++ +++..+.|++| |.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 456899999999 4 9999999999999999999984 6799999999999999998 99999999999 999
Q ss_pred eccccc
Q psy40 160 IVCKYN 165 (168)
Q Consensus 160 a~~~~~ 165 (168)
++++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987654
No 180
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=1.9e-18 Score=111.18 Aligned_cols=72 Identities=14% Similarity=0.322 Sum_probs=66.3
Q ss_pred CCCcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eee
Q psy40 84 ATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDK 159 (168)
Q Consensus 84 ~~~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~ 159 (168)
...++|||+|||+ +++++|+++|++||.|..+.+ ++|||||+|.+.++|.+|++ +++..++|+.| |.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3458999999998 799999999999999999988 46899999999999999997 99999999999 999
Q ss_pred eccc
Q psy40 160 IVCK 163 (168)
Q Consensus 160 a~~~ 163 (168)
++++
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9743
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=1.4e-18 Score=123.95 Aligned_cols=80 Identities=23% Similarity=0.401 Sum_probs=72.5
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
..++|||+|||+ +++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++ +++..+.|+.| |.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457999999999 9999999999999999999999999899999999999999999999998 99999999999 99886
Q ss_pred ccc
Q psy40 162 CKY 164 (168)
Q Consensus 162 ~~~ 164 (168)
++.
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.77 E-value=2.8e-18 Score=109.46 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=70.7
Q ss_pred CCCcEEEEeCCCC------CCHHHHHHHHhcCCcEeEEEEeccCCC-CCceeEEEEEEcCHHHHHHHHh-hCCceeCCce
Q psy40 84 ATVKKMFVGGLKD------QEEDDLREYFSQFGTIESVNMVTNKET-GAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYD 155 (168)
Q Consensus 84 ~~~~~l~V~nlp~------~t~~~L~~~F~~~G~v~~v~i~~d~~t-g~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~ 155 (168)
.++++|+|.||.. -++++|++.|++||.|.++.|++++.+ ++++|||||+|.+.++|.+|+. |++..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3568999999952 378999999999999999999998654 6889999999999999999998 9999999999
Q ss_pred e-Eeeecc
Q psy40 156 V-VDKIVC 162 (168)
Q Consensus 156 i-v~~a~~ 162 (168)
| |.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 9 999965
No 183
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=2.4e-18 Score=113.18 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeE-EEEEEcCHHHHHHHHh-hCCceeCC--cee-Ee
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGF-AFIEFNDYDVVDKIRG-FAFIEFND--YDV-VD 158 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~-afV~f~~~~~a~~ai~-~~~~~i~G--~~i-v~ 158 (168)
+.-.|||+||++ +|+++|+++|++||+|.+|.++.+. +|| |||+|.+.++|.+|++ +++..|.| +.| |.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 345788999999 9999999999999999999987642 577 9999999999999998 99999988 889 99
Q ss_pred eecccc
Q psy40 159 KIVCKY 164 (168)
Q Consensus 159 ~a~~~~ 164 (168)
+|+++.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998863
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.77 E-value=1.7e-18 Score=106.69 Aligned_cols=70 Identities=21% Similarity=0.514 Sum_probs=64.7
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcC----C-------cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCcee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQF----G-------TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEF 151 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~----G-------~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i 151 (168)
.+.++|||+|||+ +++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+.+++..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 3568999999999 9999999999999 8 9999998754 6899999999999999999999999
Q ss_pred CCcee-Eee
Q psy40 152 NDYDV-VDK 159 (168)
Q Consensus 152 ~G~~i-v~~ 159 (168)
.|++| |++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 99999 875
No 185
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=7.5e-19 Score=114.06 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCce-----e-
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYD-----V- 156 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~-----i- 156 (168)
..++|||+|||+ +++++|+++|++||.|..+.++.+ |||||+|.+.++|.+||+ |++..|+|+. +
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 457999999999 999999999999999999999865 799999999999999998 9999999998 6
Q ss_pred Eeeeccc
Q psy40 157 VDKIVCK 163 (168)
Q Consensus 157 v~~a~~~ 163 (168)
|..+.++
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7666554
No 186
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=7.6e-18 Score=110.27 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=64.9
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeE-EEEEEcCHHHHHHHHh-hCCceeCC--cee-Eeee
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGF-AFIEFNDYDVVDKIRG-FAFIEFND--YDV-VDKI 160 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~-afV~f~~~~~a~~ai~-~~~~~i~G--~~i-v~~a 160 (168)
..|||+|||+ +++++|+++|++||.|.+|.+.. + .|| |||+|.+.++|.+|++ |++..|.| +.| |.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4578999999 99999999999999999999865 2 276 9999999999999998 99999988 689 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9875
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.77 E-value=1.9e-18 Score=122.90 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=68.1
Q ss_pred CCcEEEEeCCC-C-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 85 TVKKMFVGGLK-D-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 85 ~~~~l~V~nlp-~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
++++|||+||| + +++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+||+ |++..+.|++| |.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 8 9999999999999999999998753 6899999999999999998 99999999999 9998
Q ss_pred cc
Q psy40 161 VC 162 (168)
Q Consensus 161 ~~ 162 (168)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=3.4e-18 Score=117.94 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCC--CceeEEEEEEcCHHHHHHHHh-hCCceeC---Ccee-
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETG--AKRGFAFIEFNDYDVVDKIRG-FAFIEFN---DYDV- 156 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg--~~~g~afV~f~~~~~a~~ai~-~~~~~i~---G~~i- 156 (168)
..++|||+|||+ +++++|+++|++||.|.++++++++.+| +++|||||+|.+.++|.+|++ +++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 358999999999 9999999999999999999999999876 899999999999999999998 9887765 5677
Q ss_pred Eeeecccc
Q psy40 157 VDKIVCKY 164 (168)
Q Consensus 157 v~~a~~~~ 164 (168)
+.++.++.
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776654
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=5.4e-18 Score=110.94 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCCCCCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 84 ATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 84 ~~~~~l~V~nlp~~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
.+.++|||+|+ .+++++|+++|++||.|.+|.++ .++|||||+|.+.++|.+|++ +++..+.|+.| |.++.
T Consensus 37 ~~~~~lfVgnl-~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS-SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC-CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45689999993 29999999999999999999986 457899999999999999997 99999999999 99998
Q ss_pred ccccC
Q psy40 162 CKYNI 166 (168)
Q Consensus 162 ~~~~~ 166 (168)
++...
T Consensus 110 ~~~~~ 114 (121)
T 2bz2_A 110 KQPML 114 (121)
T ss_dssp SSCC-
T ss_pred CCCCC
Confidence 87643
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.75 E-value=4.3e-18 Score=123.00 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.9
Q ss_pred CCCCcEEEEeCCCC-C---------CHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCcee
Q psy40 83 NATVKKMFVGGLKD-Q---------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEF 151 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~---------t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i 151 (168)
....++|||+|||. + ++++|+.+|++||+|.+|+++.+ +|||||+|.+.++|+.|++ |++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 44678999999999 8 79999999999999999999853 7899999999999999998 999999
Q ss_pred ------------CCcee-Eeeeccccc
Q psy40 152 ------------NDYDV-VDKIVCKYN 165 (168)
Q Consensus 152 ------------~G~~i-v~~a~~~~~ 165 (168)
.|+.| |+||.++++
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 89999 999987654
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=1.6e-17 Score=123.24 Aligned_cols=80 Identities=20% Similarity=0.352 Sum_probs=72.8
Q ss_pred CCCCcEEEEeCCCC-CCHHHHH----HHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~----~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
..++++|||+|||+ +++++|+ ++|++||.|.+|++++ +|+++|||||+|.+.++|.+|++ +++..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 34578999999999 9999977 8999999999999876 68899999999999999999997 99999999999
Q ss_pred -Eeeeccccc
Q psy40 157 -VDKIVCKYN 165 (168)
Q Consensus 157 -v~~a~~~~~ 165 (168)
|.+++++.+
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 999977653
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.7e-18 Score=119.76 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeee
Q psy40 83 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKI 160 (168)
Q Consensus 83 ~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a 160 (168)
..+.++|||+|||+ +++++|+++|++||.+.. .++.+..+|.++|||||+|.+.++|.+|+++++..+.|++| |.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 34568999999999 999999999999998766 34555567899999999999999999999999999999999 9999
Q ss_pred ccccc
Q psy40 161 VCKYN 165 (168)
Q Consensus 161 ~~~~~ 165 (168)
.++..
T Consensus 89 ~~~~~ 93 (175)
T 1fje_B 89 KGRDS 93 (175)
T ss_dssp CCSSC
T ss_pred CCccc
Confidence 87643
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7e-17 Score=104.23 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=67.9
Q ss_pred CCCcEEEEeCCCC-CC-----------HHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCce
Q psy40 84 ATVKKMFVGGLKD-QE-----------EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIE 150 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t-----------~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~ 150 (168)
.++++|+|.||.. .. +++|+++|++||.|.++.| .++ .++|||||+|.+.++|.+|+. +++..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999955 32 5899999999999999966 443 379999999999999999997 99999
Q ss_pred eCCcee-Eeeeccccc
Q psy40 151 FNDYDV-VDKIVCKYN 165 (168)
Q Consensus 151 i~G~~i-v~~a~~~~~ 165 (168)
++|++| |.++.++.+
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 999999 999988754
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.69 E-value=7.5e-17 Score=102.85 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCcEEEEeCC--CC-CC--------HHHHHHHHhcCCcEeEEEEeccCCC--CCceeEEEEEEcCHHHHHHHHh-hCCce
Q psy40 85 TVKKMFVGGL--KD-QE--------EDDLREYFSQFGTIESVNMVTNKET--GAKRGFAFIEFNDYDVVDKIRG-FAFIE 150 (168)
Q Consensus 85 ~~~~l~V~nl--p~-~t--------~~~L~~~F~~~G~v~~v~i~~d~~t--g~~~g~afV~f~~~~~a~~ai~-~~~~~ 150 (168)
+++.|.+.|+ |. +. +++|++.|++||.|.++.|++++.+ ++++|||||+|++.++|.+|+. |++..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5688999998 44 43 3689999999999999999998764 3679999999999999999998 99999
Q ss_pred eCCcee-Eeeecc
Q psy40 151 FNDYDV-VDKIVC 162 (168)
Q Consensus 151 i~G~~i-v~~a~~ 162 (168)
++||.| |.++.+
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 999999 999865
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=1.2e-16 Score=115.32 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCCCcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 83 NATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 83 ~~~~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
..++++|||+|||+ +++++|+++|++||.|.++++++++ +|||||+|.+.++|.+|++ +++..+.|+.| |.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34568999999997 9999999999999999999999875 7899999999999999998 99999999999 99
Q ss_pred eeccc
Q psy40 159 KIVCK 163 (168)
Q Consensus 159 ~a~~~ 163 (168)
++.++
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99755
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.68 E-value=1.4e-16 Score=103.53 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=68.7
Q ss_pred CCcEEEEeCCC--C-CC---HHHHHHHHhcCCcEeEEEEeccCC----CCCceeEEEEEEcCHHHHHHHHh-hCCceeCC
Q psy40 85 TVKKMFVGGLK--D-QE---EDDLREYFSQFGTIESVNMVTNKE----TGAKRGFAFIEFNDYDVVDKIRG-FAFIEFND 153 (168)
Q Consensus 85 ~~~~l~V~nlp--~-~t---~~~L~~~F~~~G~v~~v~i~~d~~----tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G 153 (168)
++++|++.|+- . +. +++|++.|++||.|.+|.|++++. +++++||+||+|.+.++|.+|+. |++..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46899999983 2 33 689999999999999999999864 45778999999999999999998 99999999
Q ss_pred cee-Eeeecc
Q psy40 154 YDV-VDKIVC 162 (168)
Q Consensus 154 ~~i-v~~a~~ 162 (168)
|.| |.++.+
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 999 998854
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.68 E-value=4.1e-17 Score=103.92 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=62.4
Q ss_pred EeCCCC-CCHHHHHHHH------------hcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee
Q psy40 91 VGGLKD-QEEDDLREYF------------SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV 156 (168)
Q Consensus 91 V~nlp~-~t~~~L~~~F------------~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i 156 (168)
+.|||+ +++++|++.| ++||.|.++.+++++. ++++|||||+|.+.++|.+|+. +++..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 567888 8888888777 9999999999999874 7899999999999999999998 99999999999
Q ss_pred -Eeee
Q psy40 157 -VDKI 160 (168)
Q Consensus 157 -v~~a 160 (168)
|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 9987
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=4.3e-16 Score=114.50 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeee
Q psy40 84 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKI 160 (168)
Q Consensus 84 ~~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a 160 (168)
...++|||+|||+ +|+++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+. +++..+.|+.| |.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4568999999999 999999999999999999999654 6899999999999999998 99999999999 9999
Q ss_pred cccc
Q psy40 161 VCKY 164 (168)
Q Consensus 161 ~~~~ 164 (168)
.+..
T Consensus 94 ~~~~ 97 (261)
T 3sde_A 94 THGA 97 (261)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 7643
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=4.8e-16 Score=106.95 Aligned_cols=74 Identities=20% Similarity=0.424 Sum_probs=66.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcC----C-------cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeC
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQF----G-------TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFN 152 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~----G-------~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~ 152 (168)
+.++|||+|||+ +|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+.+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 458999999999 9999999999999 6 777777653 478999999999999999999999999
Q ss_pred Ccee-Eeeecccc
Q psy40 153 DYDV-VDKIVCKY 164 (168)
Q Consensus 153 G~~i-v~~a~~~~ 164 (168)
|++| |.++.+..
T Consensus 77 g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ 89 (172)
T ss_dssp TEECEEECCSSCC
T ss_pred CceeeecCCcccC
Confidence 9999 99987653
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=110.83 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=68.1
Q ss_pred CcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeec
Q psy40 86 VKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIV 161 (168)
Q Consensus 86 ~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~ 161 (168)
+++|||+|||+ +++++|+++|++||.|.++++++++ +|||||+|.+.++|.+|++ +++..+.|++| |.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999997 9999999999999999999998864 6899999999999999998 99999999999 99997
Q ss_pred cc
Q psy40 162 CK 163 (168)
Q Consensus 162 ~~ 163 (168)
++
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=6.2e-16 Score=108.69 Aligned_cols=73 Identities=21% Similarity=0.439 Sum_probs=64.5
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcC----C-------cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeC
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQF----G-------TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFN 152 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~----G-------~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~ 152 (168)
..++|||+|||+ +++++|+++|++| | .|.++.+ ++++|||||+|.+.++|.+|+.+++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 458999999999 9999999999999 5 5666665 45578999999999999999999999999
Q ss_pred Ccee-Eeeeccc
Q psy40 153 DYDV-VDKIVCK 163 (168)
Q Consensus 153 G~~i-v~~a~~~ 163 (168)
|++| |.++.++
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 9999 9998765
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=91.46 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=56.4
Q ss_pred C-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Eeeeccccc
Q psy40 96 D-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYN 165 (168)
Q Consensus 96 ~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~~a~~~~~ 165 (168)
. +++++|+++|++||.|.+|.++ ++++|||||+|++.++|..|++. ...+.|++| |+|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCCC
Confidence 5 8999999999999999999997 36789999999999999999984 344689999 999988754
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=5.4e-15 Score=112.08 Aligned_cols=73 Identities=10% Similarity=0.209 Sum_probs=62.5
Q ss_pred CCCCcEEEEeC--CCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC---Cc-
Q psy40 83 NATVKKMFVGG--LKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN---DY- 154 (168)
Q Consensus 83 ~~~~~~l~V~n--lp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~---G~- 154 (168)
..++++|||+| |++ +|+++|+++|++||+|.+|.+++ +||||||+|++.++|++|++ |++..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 578 99999999999999999988754 36899999999999999998 9998873 55
Q ss_pred -ee-Eeeec
Q psy40 155 -DV-VDKIV 161 (168)
Q Consensus 155 -~i-v~~a~ 161 (168)
.+ +.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 45 77764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.53 E-value=4.7e-14 Score=90.99 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=63.5
Q ss_pred CCcEEEEeCCCC-CC----------HHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 85 TVKKMFVGGLKD-QE----------EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t----------~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
+++.|.+.|+-. -. +++|++.|++||.|.++.++++. ++||+||+|.+.++|.+|+. |++..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 567899999833 22 34789999999999999997763 48999999999999999998 9999999
Q ss_pred Ccee-Eeeecc
Q psy40 153 DYDV-VDKIVC 162 (168)
Q Consensus 153 G~~i-v~~a~~ 162 (168)
||.| |.++.+
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 9999 999854
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6e-13 Score=81.21 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=62.0
Q ss_pred CCCcEEEEeCCC----C-CCH----HHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCc
Q psy40 84 ATVKKMFVGGLK----D-QEE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDY 154 (168)
Q Consensus 84 ~~~~~l~V~nlp----~-~t~----~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~ 154 (168)
++..||+|...| . +-. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+||+|++..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 345788888776 2 333 5799999999999999999863 8999999999999999999999999
Q ss_pred ee-Eeeeccc
Q psy40 155 DV-VDKIVCK 163 (168)
Q Consensus 155 ~i-v~~a~~~ 163 (168)
.| |+.+.|.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 99 9998764
No 206
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.38 E-value=5.7e-14 Score=90.86 Aligned_cols=92 Identities=7% Similarity=-0.055 Sum_probs=49.5
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc-------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG-------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLE 76 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
.+|||||||++++++.|+++|+.||.+. .++|.|.++..+.+|+..+++.......+....+.++..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 5899999999999999999999999864 467777777799999988777654444333322222221
Q ss_pred c--CCCCCCCCCcEEEEeCCCC-CCHHH
Q psy40 77 I--GKPEANATVKKMFVGGLKD-QEEDD 101 (168)
Q Consensus 77 ~--~~~~~~~~~~~l~V~nlp~-~t~~~ 101 (168)
. ..........+|||+|||+ +|++.
T Consensus 86 ~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 86 REAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ----------------------------
T ss_pred cccccccccCCCCceEeCCCCCCccccc
Confidence 1 1112233456899999999 88763
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=6.6e-12 Score=81.25 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCCcEEEEeCCCC--CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcC-HHHHHHHHh-hC--CceeCCcee-
Q psy40 84 ATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND-YDVVDKIRG-FA--FIEFNDYDV- 156 (168)
Q Consensus 84 ~~~~~l~V~nlp~--~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~-~~~a~~ai~-~~--~~~i~G~~i- 156 (168)
.+...|||+||++ +++++|+++|++||+|..|.++++.. .|||.|.+ .++|..|+. ++ +..|+|..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 4568999999998 99999999999999999999998765 59999999 889999997 64 678889877
Q ss_pred Eeeec
Q psy40 157 VDKIV 161 (168)
Q Consensus 157 v~~a~ 161 (168)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76544
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=7e-12 Score=76.87 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=60.1
Q ss_pred CCCcEEEEeCCC-----C-CCH----HHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCC
Q psy40 84 ATVKKMFVGGLK-----D-QEE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153 (168)
Q Consensus 84 ~~~~~l~V~nlp-----~-~t~----~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G 153 (168)
++..||+|..++ . +-. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+||+|++..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 355799999876 2 222 5699999999999999999874 999999999999999999999999
Q ss_pred cee-Eeeec
Q psy40 154 YDV-VDKIV 161 (168)
Q Consensus 154 ~~i-v~~a~ 161 (168)
|.| |++-.
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999 98654
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.25 E-value=2.7e-11 Score=86.76 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=58.6
Q ss_pred CCHHHHHHHHhcCCcEeEEEEeccC----CCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Eeeecc
Q psy40 97 QEEDDLREYFSQFGTIESVNMVTNK----ETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VDKIVC 162 (168)
Q Consensus 97 ~t~~~L~~~F~~~G~v~~v~i~~d~----~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~~a~~ 162 (168)
-.+++|++.|++||.|.++.++++. .++.++|++||+|.+.++|.+|+. |++..++||.| +.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4567899999999999999998554 455899999999999999999998 99999999999 998753
No 210
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=3.1e-11 Score=75.92 Aligned_cols=86 Identities=14% Similarity=0.046 Sum_probs=59.2
Q ss_pred EEEEECCceeeeecccchhHhhhhccc----------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcc---
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLE--- 76 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--- 76 (168)
+||||||||++++++.|++.|+.||.+ +.++|.|.++..+.+|+..+++.......+....+.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 489999999999999999999999975 4567777777788899887776654443333222222211
Q ss_pred -cCCCCCCCCCcEEEEeCCC
Q psy40 77 -IGKPEANATVKKMFVGGLK 95 (168)
Q Consensus 77 -~~~~~~~~~~~~l~V~nlp 95 (168)
...+.......+||||||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1111222336789999996
No 211
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.95 E-value=7.1e-11 Score=76.01 Aligned_cols=89 Identities=8% Similarity=-0.052 Sum_probs=65.3
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCCcc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLE 76 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
-+||||+|||+++++..|++.|+.||.+. .|+|.|.++..+.+|+..+++.......+....+.++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 46999999999999999999999999764 466677777788888887766554333332222221111
Q ss_pred cCCCCCCCCCcEEEEeCCCC-CCHHHHHHHHhcCCc
Q psy40 77 IGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGT 111 (168)
Q Consensus 77 ~~~~~~~~~~~~l~V~nlp~-~t~~~L~~~F~~~G~ 111 (168)
. .+++. .++++|+++|++||.
T Consensus 88 ~--------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 88 F--------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp T--------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred h--------------hhhhHhHhHHHHHHHHHHhCC
Confidence 1 56788 999999999999985
No 212
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.72 E-value=3.5e-09 Score=65.84 Aligned_cols=53 Identities=9% Similarity=-0.115 Sum_probs=46.1
Q ss_pred ceeEEEEECCceeeeecccchhHhhhhccc-----------------ceeEEEecCCccchHHHHHhhhh
Q psy40 7 IVVSTVYSGSGGWWFESKCPSHEVRLAVEA-----------------GVLEVVTTRPTINNKAMEEAQSE 59 (168)
Q Consensus 7 ~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~-----------------~~~~v~~~~~~~~~~a~~~~~~~ 59 (168)
-.|+||||+|||++++++.|++.|++||.+ +.++|.|.++..+.+|++..++.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 478999999999999999999999999942 35788888888999999887664
No 213
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.1e-08 Score=64.56 Aligned_cols=51 Identities=4% Similarity=-0.296 Sum_probs=43.4
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQS 58 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~ 58 (168)
.-.+|||||||+++++++|+++|+.||.+. .+||.|.++..+.+|+..++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcc
Confidence 346999999999999999999999999864 567788888888898887653
No 214
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=1.3e-08 Score=62.40 Aligned_cols=63 Identities=8% Similarity=-0.120 Sum_probs=51.1
Q ss_pred ceeEEEEECCceeeeecccchhHhhhhccc-------ceeEEEecCCccchHHHHHhhhhhhccCCCCCC
Q psy40 7 IVVSTVYSGSGGWWFESKCPSHEVRLAVEA-------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGP 69 (168)
Q Consensus 7 ~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~-------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 69 (168)
...+||||+|||+++++..|++.|+.||.+ +.++|.|.++..+.+|+...++.......+...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 356899999999999999999999999986 467888999999999998877655444444333
No 215
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.8e-07 Score=57.67 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=61.7
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcC-----CcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQF-----GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~-----G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
.++|-+-|||. +++..++.+.+.+ |.+..+.+.+|.. -|+|+|.+...|-+|.- ++|.+|+||.| |
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 47899999999 9999999999999 9999999998864 69999999999998885 99999999999 7
Q ss_pred e
Q psy40 158 D 158 (168)
Q Consensus 158 ~ 158 (168)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 5
No 216
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=3.2e-08 Score=62.19 Aligned_cols=68 Identities=10% Similarity=-0.146 Sum_probs=50.7
Q ss_pred ceeEEEEECCceeeeecccchhHhhh-hcccc--------------eeEEEecCCccchHHHHHhhhhh-hccCCCCCCC
Q psy40 7 IVVSTVYSGSGGWWFESKCPSHEVRL-AVEAG--------------VLEVVTTRPTINNKAMEEAQSEE-EVDMEIPGPP 70 (168)
Q Consensus 7 ~~~~tlfvg~l~~~~~~~~l~~~f~~-~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~ 70 (168)
..-.+|||+|||+++++..|++.|+. ||.+. .++|.|.++..+.+|+..+++.. .....+....
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34579999999999999999999999 99654 46666777778888888777655 4444444444
Q ss_pred CCCC
Q psy40 71 HMDK 74 (168)
Q Consensus 71 ~~~~ 74 (168)
+.++
T Consensus 87 a~~~ 90 (104)
T 2dhg_A 87 AIPK 90 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 4333
No 217
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=7.9e-09 Score=63.37 Aligned_cols=62 Identities=11% Similarity=-0.070 Sum_probs=50.6
Q ss_pred ccceeEEEEECCceeeeecccchhHhhhhcccc-------eeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 5 SGIVVSTVYSGSGGWWFESKCPSHEVRLAVEAG-------VLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 5 ~~~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
....-++|||+|||+++++..|++.|+.||.+. .++|.|.++..+.+|+..+++.......+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 344567999999999999999999999999864 57888999999999998877665444433
No 218
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=8.4e-09 Score=64.17 Aligned_cols=55 Identities=11% Similarity=-0.092 Sum_probs=46.8
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc----------ceeEEEecCCccchHHHHHhhhhhhcc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
-++|||||||+++++..|+++|..||.+ +.++|.|.++..+.+|+..+++.....
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4699999999999999999999999986 578888888889999998776655433
No 219
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.62 E-value=6.6e-09 Score=65.07 Aligned_cols=52 Identities=6% Similarity=-0.197 Sum_probs=41.9
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
++|||||||++++++.|++.|+.||.+.. |+|.|.++..+.+|+..+++...
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 86 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE
Confidence 58999999999999999999999998754 55666666678888877665543
No 220
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=9.9e-09 Score=65.18 Aligned_cols=55 Identities=13% Similarity=-0.127 Sum_probs=46.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc--------ceeEEEecCCccchHHHHHhhhhhhcc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA--------GVLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~--------~~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
-.+|||+|||+++++++|+++|+.||.+ +.++|.|.++..+.+|+..+++.....
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 3599999999999999999999999976 567888888889999998877665443
No 221
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.61 E-value=2e-08 Score=64.54 Aligned_cols=57 Identities=14% Similarity=-0.109 Sum_probs=48.3
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc--------ceeEEEecCCccchHHHHHhhhhhhccCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA--------GVLEVVTTRPTINNKAMEEAQSEEEVDME 65 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~--------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~ 65 (168)
..+|||+|||+++++++|+++|+.||.+ +.++|.|.++..+.+|+..+++.......
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3699999999999999999999999976 56888899999999999888776544433
No 222
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=7.1e-09 Score=63.96 Aligned_cols=55 Identities=13% Similarity=-0.078 Sum_probs=47.4
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcc-c--------ceeEEEecCCccchHHHHHhhh-hhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVE-A--------GVLEVVTTRPTINNKAMEEAQS-EEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~-~--------~~~~v~~~~~~~~~~a~~~~~~-~~~~ 62 (168)
..+||||||||++++++.|++.|+.||. + +.++|.|.++..+.+|+..+++ ....
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 4579999999999999999999999998 3 5788889999999999988777 4433
No 223
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=1.3e-08 Score=63.50 Aligned_cols=59 Identities=10% Similarity=-0.071 Sum_probs=47.7
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.-+||||+|||+++++..|+++|+.||.+ +.++|.|.++..+.+|+..+++.......+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45799999999999999999999999975 357788888888999988877655443333
No 224
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.1e-08 Score=61.97 Aligned_cols=62 Identities=8% Similarity=-0.074 Sum_probs=48.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc----------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG----------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPH 71 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~----------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 71 (168)
..+|||||||+++++..|+++|..||.+. .++|.|.++..+.+|+. +++.......+....+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 46999999999999999999999999764 57888888888888887 6655544444444433
No 225
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=2.2e-08 Score=63.58 Aligned_cols=59 Identities=12% Similarity=-0.020 Sum_probs=48.6
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.-+||||||||+.+++..|++.|+.||.+ +.++|.|.++..+.+|+..+++.......+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34699999999999999999999999976 567888888889999998877665444433
No 226
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=1.6e-08 Score=63.01 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=42.6
Q ss_pred ccceeEEEEECCceeeeecccchhHhhhhcccc-ee---------------EEEecCCccchHHHHHhhhhh
Q psy40 5 SGIVVSTVYSGSGGWWFESKCPSHEVRLAVEAG-VL---------------EVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 5 ~~~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-~~---------------~v~~~~~~~~~~a~~~~~~~~ 60 (168)
+....+||||||||++++++.|++.|+.||.+. .+ +|.|.++..+.+|+..+++..
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 76 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc
Confidence 344567999999999999999999999999877 54 444555556777776555544
No 227
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.57 E-value=5.6e-08 Score=63.80 Aligned_cols=61 Identities=5% Similarity=-0.213 Sum_probs=47.8
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc-----------------eeEEEecCCccchHHHHHhhhh----hhccCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG-----------------VLEVVTTRPTINNKAMEEAQSE----EEVDMEI 66 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-----------------~~~v~~~~~~~~~~a~~~~~~~----~~~~~~~ 66 (168)
.-+||||||||++++++.|+++|+.||.+. .+||.|.++ .+.+|+..+++. ......+
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 346999999999999999999999999873 467777777 888888888776 4444444
Q ss_pred CCC
Q psy40 67 PGP 69 (168)
Q Consensus 67 ~~~ 69 (168)
...
T Consensus 101 ~V~ 103 (131)
T 2m2b_A 101 NVE 103 (131)
T ss_dssp CCE
T ss_pred EEE
Confidence 443
No 228
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.57 E-value=2.4e-08 Score=61.20 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=42.5
Q ss_pred EEEEECCceeeeecccchhHhhhhc--ccce---------------eEEEecCCccchHHHHHhhhhhhccCCCCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAV--EAGV---------------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGP 69 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g--~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 69 (168)
.||||||||+++++++|++.|+.|| .+.. ++|.|.+...+.+|+..+++.......+...
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 4899999999999999999999999 6654 4455555557778887777655444444333
No 229
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.7e-08 Score=64.69 Aligned_cols=57 Identities=9% Similarity=-0.076 Sum_probs=48.3
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
++|||+|||++++++.|+++|..||.+ +.++|.|.+...+.+|+..+++.......+
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 699999999999999999999999986 578899999999999998877655443333
No 230
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.56 E-value=4.3e-08 Score=62.34 Aligned_cols=59 Identities=10% Similarity=-0.085 Sum_probs=49.7
Q ss_pred EEEEECCceee-eecccchhHhhhhccc-------ceeEEEecCCccchHHHHHhhhhhhccCCCCC
Q psy40 10 STVYSGSGGWW-FESKCPSHEVRLAVEA-------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPG 68 (168)
Q Consensus 10 ~tlfvg~l~~~-~~~~~l~~~f~~~g~~-------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~ 68 (168)
+||||+|||++ ++++.|+++|+.||.+ +.++|.|.++..+.+|+..+++.......+..
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 59999999999 9999999999999986 57889999999999999887776554444433
No 231
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.5e-08 Score=62.89 Aligned_cols=59 Identities=10% Similarity=-0.046 Sum_probs=48.9
Q ss_pred eeEEEEECCcee-eeecccchhHhhhhccc-------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 8 VVSTVYSGSGGW-WFESKCPSHEVRLAVEA-------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 8 ~~~tlfvg~l~~-~~~~~~l~~~f~~~g~~-------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.-+||||||||+ ++++..|+++|+.||.+ +.++|.|.++..+.+|+..+++.......+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 347999999999 99999999999999986 568889999999999998877665443333
No 232
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=2.8e-08 Score=62.61 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=49.1
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCCCCCCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHM 72 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 72 (168)
..++|||+|||++++++.|+++|..||.+. .++|.|.++..+.+|+.. +........+....+.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 346999999999999999999999999763 567777777788888877 5544444444444444
Q ss_pred CC
Q psy40 73 DK 74 (168)
Q Consensus 73 ~~ 74 (168)
++
T Consensus 94 ~~ 95 (105)
T 2dh8_A 94 PR 95 (105)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 233
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.55 E-value=4.1e-08 Score=61.94 Aligned_cols=54 Identities=9% Similarity=-0.056 Sum_probs=45.0
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.-++|||+|||+++++..|+++|+.||.+ +.++|.|.++..+.+|+..+++...
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 45799999999999999999999999965 4577777777788888887776543
No 234
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.55 E-value=2.5e-08 Score=63.94 Aligned_cols=63 Identities=6% Similarity=-0.190 Sum_probs=47.1
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhhccCCCCCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPH 71 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 71 (168)
-++|||+|||++++++.|+++|+.||.+.. ++|.|.++..+.+|+..+++.......+....+
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 369999999999999999999999998754 556666666788888777665544444433333
No 235
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=2.6e-08 Score=63.60 Aligned_cols=59 Identities=10% Similarity=-0.070 Sum_probs=48.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc-----------------------eeEEEecCCccchHHHHHhhhhhhccC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG-----------------------VLEVVTTRPTINNKAMEEAQSEEEVDM 64 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-----------------------~~~v~~~~~~~~~~a~~~~~~~~~~~~ 64 (168)
.-+||||+|||+++++..|+++|+.||.+. .|+|.|.++..+.+|+..+++......
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 446999999999999999999999999886 567778788889999987776654444
Q ss_pred CC
Q psy40 65 EI 66 (168)
Q Consensus 65 ~~ 66 (168)
.+
T Consensus 94 ~l 95 (113)
T 2cpe_A 94 KL 95 (113)
T ss_dssp EC
T ss_pred EE
Confidence 44
No 236
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=2.3e-08 Score=61.47 Aligned_cols=59 Identities=8% Similarity=-0.127 Sum_probs=48.9
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc-------eeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG-------VLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.-++|||+|||++++++.|++.|+.||.+. .++|.|.++..+.+|+..+++.......+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 457999999999999999999999999864 57788999999999998877665443333
No 237
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=3.1e-08 Score=61.97 Aligned_cols=58 Identities=9% Similarity=-0.111 Sum_probs=46.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
-+||||||||++++++.|++.|+.||.+ +.++|.|.+...+.+|+..+++.......+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3699999999999999999999999975 467788888888889888776655443333
No 238
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=7.4e-08 Score=59.22 Aligned_cols=65 Identities=8% Similarity=-0.111 Sum_probs=52.9
Q ss_pred EEEEECCceeeeeccc----chhHhhhhc-cc-----ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCCCCC
Q psy40 10 STVYSGSGGWWFESKC----PSHEVRLAV-EA-----GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDK 74 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~----l~~~f~~~g-~~-----~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 74 (168)
.+|||+|||+.++++. |.++|+.|| .+ +.++|.|.+..++.+|++.+++.......+....+..+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 4599999999999888 558999995 65 68999999999999999999988876665544444433
No 239
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.54 E-value=2.8e-08 Score=63.95 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=46.0
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc--------------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA--------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~--------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
-+||||||||+++++..|++.|+.||.+ +.|+|.|.+...+.+|+..+++.......+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4699999999999999999999999976 456677777778888888766655443333
No 240
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.54 E-value=3e-08 Score=61.82 Aligned_cols=57 Identities=12% Similarity=-0.055 Sum_probs=47.5
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
++|||+|||++++++.|++.|+.||.+ +.++|.|.++..+.+|+..+++.......+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 599999999999999999999999976 567888888889999998877665443333
No 241
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.54 E-value=4.8e-08 Score=59.96 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=45.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc-------------eeEEEecCCccchHHHHHhhhhhhccCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG-------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIP 67 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~ 67 (168)
-++|||+|||+++++..|++.|+.||.+. .++|.|.++..+.+|+..+++.......+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 46999999999999999999999999654 466667777788888887666554444333
No 242
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=2.1e-08 Score=62.96 Aligned_cols=60 Identities=12% Similarity=-0.043 Sum_probs=47.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc-------------eeEEEecCCccchHHHHHhhhhhhccCCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG-------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIP 67 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~ 67 (168)
..++|||+|||+++++..|+++|+.||.+. .|+|.|.++..+.+|+..+++.......+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 457999999999999999999999999764 466667777788888887776654444443
No 243
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=4.3e-08 Score=61.90 Aligned_cols=49 Identities=6% Similarity=-0.258 Sum_probs=42.6
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQS 58 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~ 58 (168)
.+|||+|||+++++..|+++|++||.+. .++|.|.+...+.+|+..++.
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 5999999999999999999999999764 577888888889998887654
No 244
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=2.3e-08 Score=62.20 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=44.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc------------------eeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG------------------VLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~------------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
-++|||+|||++++++.|++.|+.||.+. .++|.|.++..+.+|+..+++.......+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 36999999999999999999999999764 45566666667888887766655443333
No 245
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=3e-08 Score=62.95 Aligned_cols=59 Identities=10% Similarity=-0.096 Sum_probs=48.0
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc------------eeEEEecCCccchHHHHHhhhhhhccCCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG------------VLEVVTTRPTINNKAMEEAQSEEEVDMEIP 67 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~ 67 (168)
-+||||+|||++++++.|+++|+.||.+. .++|.|.++..+.+|+..++........+.
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 35999999999999999999999999763 677888888899999988776654444343
No 246
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=3.3e-08 Score=62.09 Aligned_cols=59 Identities=8% Similarity=-0.103 Sum_probs=46.5
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc-------------eeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG-------------VLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.-++|||+|||+++++..|+++|+.||.+. .++|.|.++..+.+|+..+++.......+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 346999999999999999999999999763 46677777778888888776655444333
No 247
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.52 E-value=1.4e-08 Score=62.18 Aligned_cols=53 Identities=9% Similarity=-0.018 Sum_probs=41.8
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
|+||||||||++++++.|++.|+.+|.+. .++|.|.++. +.+|+..+++....
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM 68 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC
Confidence 58999999999999999999999999764 4666676666 77777665554433
No 248
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.51 E-value=2.5e-08 Score=62.08 Aligned_cols=53 Identities=11% Similarity=-0.036 Sum_probs=46.2
Q ss_pred eEEEEECCcee-eeecccchhHhhhhccc-------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGW-WFESKCPSHEVRLAVEA-------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~-~~~~~~l~~~f~~~g~~-------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
-++|||||||+ +++++.|++.|+.||.+ +.++|.|.+...+.+|+...++...
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 36999999998 99999999999999976 5688999999999999987766543
No 249
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=2.6e-08 Score=62.57 Aligned_cols=55 Identities=9% Similarity=-0.121 Sum_probs=45.3
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc-------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG-------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.-++|||+|||+++++..|+++|+.||.+. .++|.|.++..+.+|+..+++....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 346999999999999999999999999764 5677777777888888877665543
No 250
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=5.6e-08 Score=60.99 Aligned_cols=58 Identities=10% Similarity=-0.069 Sum_probs=47.8
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.+||||+|||+++++..|+++|+.||.+ +.|+|.|.++..+.+|+..+++.......+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 4799999999999999999999999965 357888888889999998877665444333
No 251
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=3.8e-08 Score=61.32 Aligned_cols=54 Identities=4% Similarity=-0.134 Sum_probs=42.5
Q ss_pred ceeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhh
Q psy40 7 IVVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 7 ~~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
..-++|||+|||+++++..|+++|..||.+. .|+|.|.++..+.+|+. ++....
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~ 76 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI 76 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE
Confidence 3457999999999999999999999999764 46667777778888886 544433
No 252
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.50 E-value=4.8e-08 Score=62.03 Aligned_cols=55 Identities=13% Similarity=-0.037 Sum_probs=43.8
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.-++|||||||+++++..|++.|+.||.+. .|+|.|.++..+.+|+..+++....
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 346999999999999999999999999764 4666676777888888776664433
No 253
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4.7e-08 Score=60.37 Aligned_cols=58 Identities=12% Similarity=0.010 Sum_probs=45.5
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
-++|||+|||+++++..|++.|+.||.+. .++|.|.++..+.+|+..+++.......+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 36999999999999999999999999764 46666767778888888776655444333
No 254
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=3.3e-08 Score=62.20 Aligned_cols=51 Identities=6% Similarity=-0.302 Sum_probs=43.3
Q ss_pred eEEEEECCcee-eeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhhh
Q psy40 9 VSTVYSGSGGW-WFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQSE 59 (168)
Q Consensus 9 ~~tlfvg~l~~-~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~~ 59 (168)
-.+|||||||+ ++++.+|+++|+.||.+. .+||.|.++..+..|+..++..
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCC
Confidence 35899999999 999999999999999864 4777788888888888876653
No 255
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.49 E-value=3.9e-08 Score=61.93 Aligned_cols=55 Identities=7% Similarity=-0.117 Sum_probs=43.4
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.-+||||+|||++++++.|+++|+.||.+. .|+|.|.++..+.+|+..+++....
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 347999999999999999999999999764 4566666666788888776665433
No 256
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.49 E-value=3.5e-08 Score=59.23 Aligned_cols=51 Identities=10% Similarity=-0.064 Sum_probs=41.4
Q ss_pred EEEEECCceeee------ecccchhHhhhhccc-------------ceeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWF------ESKCPSHEVRLAVEA-------------GVLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~------~~~~l~~~f~~~g~~-------------~~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
+||||||||+.+ ++..|++.|++||.+ +.++|.|.++..+.+|+..+++..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 589999999999 669999999999976 467777887778888886655443
No 257
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=4.5e-08 Score=63.24 Aligned_cols=49 Identities=4% Similarity=-0.290 Sum_probs=42.3
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQS 58 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~ 58 (168)
++|||||||+++++..|+++|+.||.+. .+||.|.+...+.+|+...+.
T Consensus 32 ~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 32 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp SEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhcc
Confidence 5899999999999999999999999875 467778888888888876654
No 258
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=3.4e-08 Score=61.86 Aligned_cols=56 Identities=7% Similarity=-0.093 Sum_probs=44.8
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhcc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
.-++|||+|||+++++..|+++|+.||.+. .++|.|.++..+.+|+..+++.....
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346999999999999999999999999764 56666777778888887766655433
No 259
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=3.7e-08 Score=61.16 Aligned_cols=57 Identities=7% Similarity=-0.176 Sum_probs=46.4
Q ss_pred ceeEEEEECCceeeeecccch----hHhhhhcccc------------eeEEEecCCccchHHHHHhhhhhhcc
Q psy40 7 IVVSTVYSGSGGWWFESKCPS----HEVRLAVEAG------------VLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 7 ~~~~tlfvg~l~~~~~~~~l~----~~f~~~g~~~------------~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
....+|||||||++++++.|+ +.|+.||.+. .++|.|.++..+.+|+..+++.....
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356799999999999999999 9999999654 46777778888889988877665433
No 260
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.48 E-value=2.3e-08 Score=61.57 Aligned_cols=48 Identities=15% Similarity=-0.087 Sum_probs=40.9
Q ss_pred EEEEECCceeeeecccchhHhhhhc-cc---------------ceeEEEecCCccchHHHHHhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAV-EA---------------GVLEVVTTRPTINNKAMEEAQ 57 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g-~~---------------~~~~v~~~~~~~~~~a~~~~~ 57 (168)
++|||+|||++++++.|++.|+.|| .+ +.|+|.|.++..+.+|+..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 4899999999999999999999999 43 347888888888888887643
No 261
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.48 E-value=3.2e-08 Score=62.88 Aligned_cols=54 Identities=11% Similarity=-0.055 Sum_probs=46.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc-------ceeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA-------GVLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~-------~~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
-++|||||||++++++.|++.|+.||.+ +.++|.|.+...+.+|+..+++....
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3699999999999999999999999986 46788888888999999877766543
No 262
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=5.3e-08 Score=61.30 Aligned_cols=57 Identities=14% Similarity=-0.151 Sum_probs=45.7
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
++|||+|||+++++..|+++|+.||.+. .++|.|.++..+.+|+..+++.......+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 5999999999999999999999999763 57777877788888888766654433333
No 263
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.46 E-value=3.8e-08 Score=61.83 Aligned_cols=54 Identities=11% Similarity=-0.053 Sum_probs=46.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc-------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG-------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.++|||+|||+++++..|+++|..||.+. .++|.|.++..+.+|+..+++....
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 36999999999999999999999999764 5788899999999999887766533
No 264
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=6e-08 Score=61.21 Aligned_cols=59 Identities=10% Similarity=-0.108 Sum_probs=45.8
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc----------------eeEEEecCCccchHHHHHh-hhhhhccCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG----------------VLEVVTTRPTINNKAMEEA-QSEEEVDMEI 66 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~----------------~~~v~~~~~~~~~~a~~~~-~~~~~~~~~~ 66 (168)
.-++|||+|||+++++..|+++|+.||.+. .++|.|.++..+.+|+..+ ++.......+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 346999999999999999999999999753 5677777777888888877 5544433333
No 265
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.46 E-value=5.9e-08 Score=60.68 Aligned_cols=50 Identities=8% Similarity=-0.281 Sum_probs=43.3
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQSE 59 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~~ 59 (168)
++|||+|||+++++..|+++|++||.+. .|+|.+.+...+.+|+...++.
T Consensus 22 ~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 22 PVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4899999999999999999999999864 5777888888888888876654
No 266
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=4.1e-08 Score=60.97 Aligned_cols=53 Identities=8% Similarity=-0.110 Sum_probs=45.1
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
++|||+|||+++++..|++.|+.||.+. .++|.|.++..+.+|+..+++....
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 6999999999999999999999999753 6788888888899998877665443
No 267
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.6e-08 Score=62.21 Aligned_cols=54 Identities=4% Similarity=-0.098 Sum_probs=43.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.-++|||+|||++++++.|++.|+.||.+. .++|.|.++..+.+|+..+++...
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 346999999999999999999999999764 456666666788888877665443
No 268
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=4.5e-08 Score=60.56 Aligned_cols=55 Identities=9% Similarity=-0.080 Sum_probs=43.7
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc----------------eeEEEecCCccchHHHHHhhhhhhcc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG----------------VLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~----------------~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
.++|||+|||+++++..|++.|+.||.+. .++|.|.++..+.+|+..+++.....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46999999999999999999999999764 45666777778888887666555433
No 269
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=4.4e-08 Score=62.30 Aligned_cols=54 Identities=9% Similarity=-0.064 Sum_probs=44.9
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc-------------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA-------------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~-------------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.-++|||||||++++++.|++.|+.||.+ +.++|.|.++..+.+|+..+++...
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34699999999999999999999999976 3577778888888888887665543
No 270
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.44 E-value=5.6e-08 Score=60.77 Aligned_cols=57 Identities=12% Similarity=-0.112 Sum_probs=46.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc--------------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA--------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~--------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
-.+|||||||+++++..|++.|+.||.+ +.++|.|.++..+.+|+. +++.......+
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 4699999999999999999999999853 468999999999999997 66655443333
No 271
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.44 E-value=3.5e-08 Score=63.07 Aligned_cols=53 Identities=13% Similarity=-0.112 Sum_probs=45.0
Q ss_pred EEEEECCceeeeecccchhHhhhhc-cc-----------ceeEEEecCCccchHHHHHhhhhhhc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAV-EA-----------GVLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g-~~-----------~~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.+|||||||++++++.|++.|+.|| .+ +.++|.|.+...+.+|+..+++....
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5999999999999999999999999 43 45788888888999999887765543
No 272
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.44 E-value=8.9e-08 Score=61.08 Aligned_cols=55 Identities=7% Similarity=-0.211 Sum_probs=47.1
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.-++|||+|||+.+++..|+++|+.||.+ +.++|.|.++..+.+|+..+++....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFH 72 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 34799999999999999999999999976 35788898888999999887766543
No 273
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.44 E-value=5.4e-08 Score=61.83 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=41.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQ 57 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~ 57 (168)
-+||||+|||++++++.|++.|..||.+. .++|.|.+...+.+|+..++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 36999999999999999999999999653 56777777778888888776
No 274
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=5.2e-08 Score=60.71 Aligned_cols=58 Identities=12% Similarity=-0.080 Sum_probs=48.1
Q ss_pred eEEEEECCceeeeecccchhHhhhh--ccc-------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLA--VEA-------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~--g~~-------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
.++|||+|||+++++..|+++|..| |.+ +.++|.|.++..+.+|+..+++.......+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3699999999999999999999999 654 468899999999999998877665443333
No 275
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=8.9e-08 Score=57.86 Aligned_cols=55 Identities=11% Similarity=-0.141 Sum_probs=44.0
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhcc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
-++|||+|||++++++.|++.|+.||.+. .++|.|.++..+.+|+..+++.....
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 36999999999999999999999999764 45666666668888888777665433
No 276
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=6.6e-08 Score=60.71 Aligned_cols=49 Identities=0% Similarity=-0.371 Sum_probs=42.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQ 57 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~ 57 (168)
-++|||||||+.++++.|+++|+.||.+ +.+||.|.+...+.+|+..++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhc
Confidence 3699999999999999999999999986 457888888888888887654
No 277
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.44 E-value=8.6e-08 Score=61.34 Aligned_cols=55 Identities=7% Similarity=-0.218 Sum_probs=44.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.-.||||+|||+.+++..|+++|..||.+. .|+|.|.++..+.+|+..+++....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457999999999999999999999999764 4566666667888888876665433
No 278
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.44 E-value=3.3e-08 Score=60.00 Aligned_cols=52 Identities=8% Similarity=-0.170 Sum_probs=41.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
-.+|||+|||+++++..|++.|+.+|.+.. ++|.|.++..+.+|+..+++..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW 72 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 369999999999999999999999997644 5556666667788887666544
No 279
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=4e-08 Score=61.69 Aligned_cols=57 Identities=7% Similarity=-0.203 Sum_probs=44.6
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhhccC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEEVDM 64 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~~~~ 64 (168)
.-++|||+|||+++++..|+++|+.||.+.. |+|.|.++..+.+|+..+++......
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3479999999999999999999999997644 56666666678888877666554333
No 280
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.43 E-value=1e-07 Score=59.57 Aligned_cols=53 Identities=9% Similarity=-0.160 Sum_probs=41.0
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc----------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG----------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~----------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
..+||||||||++++++.|++.|+.|| +. .++|.|.+...+.+|+ .+++....
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 346999999999999999999999998 43 5667777777888888 65555433
No 281
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.43 E-value=7.5e-08 Score=60.74 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=44.5
Q ss_pred eEEEEECCceeee------ecccchhHhhhhccc-------------ceeEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWF------ESKCPSHEVRLAVEA-------------GVLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~------~~~~l~~~f~~~g~~-------------~~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
-+||||||||+.+ ++..|++.|+.||.+ +.++|.|.++..+.+|+..+++..
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 4699999999999 678899999999975 578888999999999998766554
No 282
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=2.5e-08 Score=63.63 Aligned_cols=57 Identities=7% Similarity=-0.152 Sum_probs=45.9
Q ss_pred EEEEECCceeeeecccch---hHhhhhcccc------------------eeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 10 STVYSGSGGWWFESKCPS---HEVRLAVEAG------------------VLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~---~~f~~~g~~~------------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
++|||||||++++++.|+ ++|.+||.+. .++|.|.++..+.+|+..+++.......+
T Consensus 16 ~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 16 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp SCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 599999999999999999 9999999753 66777777778888988877665443333
No 283
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=5.3e-08 Score=61.41 Aligned_cols=52 Identities=10% Similarity=-0.168 Sum_probs=41.5
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
-+||||||||+++++..|++.|+.||.+.. |+|.|.++..+.+|+..+++..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 89 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE
Confidence 368999999999999999999999997644 5566666667788887665543
No 284
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.42 E-value=6.8e-08 Score=59.63 Aligned_cols=51 Identities=14% Similarity=-0.066 Sum_probs=43.0
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
++|||+|||+++++..|+++|+.||.+. .++|.|.++..+.+|+..+++..
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 5999999999999999999999999764 56777777778888888766544
No 285
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=4.8e-08 Score=60.46 Aligned_cols=53 Identities=4% Similarity=-0.131 Sum_probs=42.7
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce------------eEEEecCCccchHHHHHhhhhhhc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV------------LEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~------------~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
++|||||||+++++..|++.|..||.+.. ++|.|.++..+.+|+..+++....
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 68999999999999999999999997655 456666666788888776665443
No 286
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.41 E-value=7.8e-08 Score=61.45 Aligned_cols=49 Identities=0% Similarity=-0.193 Sum_probs=41.7
Q ss_pred EEEEECCceee-eecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhh
Q psy40 10 STVYSGSGGWW-FESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQS 58 (168)
Q Consensus 10 ~tlfvg~l~~~-~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~ 58 (168)
.+|||||||++ +++.+|+++|+.||.+. .+||.|.+...+..|+..++.
T Consensus 26 ~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 26 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhcc
Confidence 59999999998 99999999999999864 467777777788888877654
No 287
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.8e-08 Score=61.64 Aligned_cols=55 Identities=11% Similarity=-0.044 Sum_probs=44.0
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.-++|||+|||+++++..|+++|+.||.+. .|+|.|.++..+.+|+..+++....
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346999999999999999999999999764 4666676777888888776665543
No 288
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.41 E-value=9.9e-08 Score=60.80 Aligned_cols=54 Identities=9% Similarity=-0.084 Sum_probs=43.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
-+||||+|||++++++.|+++|++||.+.. ++|.|.++..+.+|+..+++....
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 469999999999999999999999998755 455565666788888777665543
No 289
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.41 E-value=6.2e-08 Score=59.80 Aligned_cols=53 Identities=4% Similarity=-0.238 Sum_probs=44.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
-.+|||+|||+++++..|+++|+.+|.+. .++|.|.++..+.+|+..+++...
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE
Confidence 37999999999999999999999999764 477778888888888887665543
No 290
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=7.6e-06 Score=50.72 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=61.8
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhc-----CCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee-Ee
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQ-----FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VD 158 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~-----~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i-v~ 158 (168)
..+|.|.|||+ ++++.|.-+|+. -|+|.++.... +-|+|+|.+...|++.|+-..|.|+|.++ |.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 47899999999 999999999987 25888887743 36899999999999999887899999999 98
Q ss_pred eeccccc
Q psy40 159 KIVCKYN 165 (168)
Q Consensus 159 ~a~~~~~ 165 (168)
...++..
T Consensus 80 P~~~~~~ 86 (104)
T 2dhx_A 80 PAPPRAP 86 (104)
T ss_dssp ECCCCCC
T ss_pred cCCCCCc
Confidence 7766653
No 291
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=5e-08 Score=60.62 Aligned_cols=54 Identities=6% Similarity=-0.207 Sum_probs=45.1
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.-.+|||+|||+++++..|+++|..||.+ +.++|.|.++..+.+|+..+++...
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 34799999999999999999999999976 3577888888889999887765543
No 292
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.39 E-value=5.7e-08 Score=60.19 Aligned_cols=54 Identities=11% Similarity=-0.078 Sum_probs=44.4
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhhcc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
++|||||||+++++..|++.|+.||.+ +.++|.|.++..+.+|+..+++.....
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 589999999999999999999999965 357777877778888888776654433
No 293
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.39 E-value=9.4e-08 Score=59.77 Aligned_cols=52 Identities=10% Similarity=-0.108 Sum_probs=42.2
Q ss_pred EEEEECCcee------eeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhh
Q psy40 10 STVYSGSGGW------WFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 10 ~tlfvg~l~~------~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
+||||||||+ ++++..|++.|++||.+. .++|.|.++..+.+|+..+++...
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 6899999999 999999999999999764 456666666688888877665443
No 294
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.38 E-value=1.1e-07 Score=57.20 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=41.5
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.||||||||+++++..|++.|+.+|.+.. ++|.|.++..+.+|+..+++...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 48999999999999999999999997654 55556666677888877665543
No 295
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.38 E-value=5.5e-08 Score=59.09 Aligned_cols=54 Identities=13% Similarity=-0.035 Sum_probs=44.5
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc----------------ceeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA----------------GVLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~----------------~~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
-+||||+|||+++++..|++.|+.||.+ +.|+|.|.++..+.+|+..+++....
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 4699999999999999999999999865 35677787788888888876665533
No 296
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.38 E-value=6.5e-08 Score=63.29 Aligned_cols=56 Identities=9% Similarity=-0.158 Sum_probs=45.6
Q ss_pred EEEEECCceeeeecccch----hHhhhhccc------------ceeEEEecCCccchHHHHHhhhhhhccCC
Q psy40 10 STVYSGSGGWWFESKCPS----HEVRLAVEA------------GVLEVVTTRPTINNKAMEEAQSEEEVDME 65 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~----~~f~~~g~~------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~ 65 (168)
+||||||||+.++++.|+ +.|++||.+ +.++|.|.++..+..|+..+++.......
T Consensus 30 ~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 30 QVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 599999999999998876 689999976 46788888888999999887776544333
No 297
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=3.5e-08 Score=61.70 Aligned_cols=54 Identities=9% Similarity=-0.058 Sum_probs=46.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc-----------ceeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA-----------GVLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~-----------~~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
-++|||+|||++++++.|+++|+.+|.+ +.++|.|.++..+.+|+..+++....
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4699999999999999999999999864 57899999999999999877765443
No 298
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.38 E-value=8.8e-08 Score=58.25 Aligned_cols=52 Identities=12% Similarity=-0.151 Sum_probs=44.0
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
-..||||||++.++++.|+++|.++|++ +.++|.+.++..+.+|++.+++..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~ 67 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCV 67 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCE
Confidence 3579999999999999999999999986 456777888888999888776644
No 299
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.38 E-value=1.1e-07 Score=63.70 Aligned_cols=53 Identities=17% Similarity=0.021 Sum_probs=44.7
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc----------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.+||||||||+++++..|++.|+.||.+ +.++|.|.++..+.+|+..+++...
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 135 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 135 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4699999999999999999999999975 4677778888888888887666543
No 300
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.73 E-value=4.3e-08 Score=62.92 Aligned_cols=66 Identities=11% Similarity=-0.033 Sum_probs=48.5
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce-----------------------eEEEecCCccchHHHHHhhhhhhccCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV-----------------------LEVVTTRPTINNKAMEEAQSEEEVDME 65 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~-----------------------~~v~~~~~~~~~~a~~~~~~~~~~~~~ 65 (168)
-++|||+|||+++++..|++.|+.||.+.. ++|.|.++..+.+|+..+++.......
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 469999999999999999999999998754 556666666788888776665544444
Q ss_pred CCCCCCCCC
Q psy40 66 IPGPPHMDK 74 (168)
Q Consensus 66 ~~~~~~~~~ 74 (168)
+....+.++
T Consensus 87 l~V~~a~~~ 95 (116)
T 2lcw_A 87 IKVSFATRR 95 (116)
Confidence 444444433
No 301
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.37 E-value=6.2e-08 Score=61.52 Aligned_cols=53 Identities=13% Similarity=-0.170 Sum_probs=44.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
-+||||||||+++++..|++.|+.||.+ +.++|.|.++..+.+|+..+++...
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3699999999999999999999999965 4577778878888888887666543
No 302
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.36 E-value=1.3e-07 Score=57.03 Aligned_cols=52 Identities=12% Similarity=-0.030 Sum_probs=43.4
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
-++|||+|||+++++..|++.|+.||.+. .++|.|.++..+.+|+..+++..
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 73 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE
Confidence 46999999999999999999999999753 46777877778888887766554
No 303
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=7.3e-08 Score=60.71 Aligned_cols=46 Identities=13% Similarity=-0.187 Sum_probs=36.5
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce--------------eEEEecCCccchHHHH
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV--------------LEVVTTRPTINNKAME 54 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~--------------~~v~~~~~~~~~~a~~ 54 (168)
-+||||||||++++++.|++.|+.||.+.. ++|.|.++..+.+|+.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 469999999999999999999999997654 5555555556666664
No 304
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=1.1e-07 Score=60.13 Aligned_cols=49 Identities=12% Similarity=-0.028 Sum_probs=40.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhcc-c----------------ceeEEEecCCccchHHHHHhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVE-A----------------GVLEVVTTRPTINNKAMEEAQ 57 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~-~----------------~~~~v~~~~~~~~~~a~~~~~ 57 (168)
-+||||||||++++++.|++.|..||. + +.++|.|.++..+.+|+..++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 369999999999999999999999987 3 357777777778888887654
No 305
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=1.4e-07 Score=55.75 Aligned_cols=48 Identities=10% Similarity=0.022 Sum_probs=37.4
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQ 57 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~ 57 (168)
+||||||||++++++.|++.|+++|.+.. ++|.+.++..+.+|+...+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 48999999999999999999999997654 4555555556667665544
No 306
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=7.6e-08 Score=61.72 Aligned_cols=46 Identities=9% Similarity=-0.104 Sum_probs=36.6
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHH
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEE 55 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~ 55 (168)
++|||+|||+++++..|+++|..||.+.. ++|.|.++..+.+|+..
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 59999999999999999999999997754 45555555566666654
No 307
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=8.1e-08 Score=59.23 Aligned_cols=51 Identities=10% Similarity=-0.145 Sum_probs=41.2
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
++|||+|||+++++..|++.|+.||.+. .++|.|.++..+.+|+..+++..
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 5999999999999999999999999764 45666666667888887765543
No 308
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.31 E-value=3.1e-07 Score=57.15 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=40.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce--------eEEEe---------------cCCccchHHHHHhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV--------LEVVT---------------TRPTINNKAMEEAQSEE 60 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~--------~~v~~---------------~~~~~~~~a~~~~~~~~ 60 (168)
...+|||||||++++++.|++.|+.||.+.. +.+.. .+...+.+|+..+++..
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3469999999999999999999999998776 55544 44446667776655543
No 309
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.30 E-value=1.2e-07 Score=58.72 Aligned_cols=53 Identities=11% Similarity=-0.064 Sum_probs=45.5
Q ss_pred eEEEEECCceeeeecccch----hHhhhhccc------------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPS----HEVRLAVEA------------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~----~~f~~~g~~------------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
-++|||||||+++++..|+ +.|+.||.+ +.++|.|.++..+.+|+..+++...
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3699999999999999999 999999975 4688899999999999988776544
No 310
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=7.6e-08 Score=60.41 Aligned_cols=52 Identities=10% Similarity=-0.071 Sum_probs=40.3
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
.+||||+|||+++++..|++.|+.||.+.. ++|.|.++..+.+|+..+++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 74 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBS
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 369999999999999999999999998754 4555555557777776655443
No 311
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.30 E-value=1.1e-07 Score=57.87 Aligned_cols=50 Identities=4% Similarity=-0.028 Sum_probs=39.1
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
+||||+|||+++++..|++.|+.||.+.. ++|.|.++..+.+|+ .+++..
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~ 71 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL 71 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE
Confidence 69999999999999999999999998654 555566666677777 544443
No 312
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=1e-07 Score=57.51 Aligned_cols=49 Identities=14% Similarity=0.041 Sum_probs=42.1
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEA 56 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~ 56 (168)
..+||||+|||+++++..|++.|++||.+ +.++|.|.++..+.+|+..+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 44799999999999999999999999975 46778888888888888765
No 313
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.30 E-value=1.5e-07 Score=61.18 Aligned_cols=57 Identities=9% Similarity=-0.162 Sum_probs=45.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDME 65 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~~ 65 (168)
-+||||+|||+++++..|+++|+.||.+. .|+|.|.++..+.+|+..+++.......
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 36999999999999999999999999754 5677777777888888877766544333
No 314
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.30 E-value=9.4e-08 Score=56.35 Aligned_cols=43 Identities=12% Similarity=-0.056 Sum_probs=34.7
Q ss_pred EEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHH
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAM 53 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~ 53 (168)
+|||||||++++++.|++.|+.+|.+. .++|.|.++..+.+|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 58 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 58 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 599999999999999999999999764 4566666665666655
No 315
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.30 E-value=1.1e-07 Score=60.11 Aligned_cols=47 Identities=13% Similarity=-0.067 Sum_probs=39.7
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcc---c--------------ceeEEEecCCccchHHHH
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVE---A--------------GVLEVVTTRPTINNKAME 54 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~---~--------------~~~~v~~~~~~~~~~a~~ 54 (168)
.-.+|||||||++++++.|+++|+.||. + +.++|.|.++..+.+|+.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 4469999999999999999999999887 3 357788877778888876
No 316
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.29 E-value=2.7e-07 Score=54.26 Aligned_cols=44 Identities=11% Similarity=-0.113 Sum_probs=37.5
Q ss_pred EEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHH
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAME 54 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~ 54 (168)
||||||||++++++.|++.|+.+|.+. .++|.|.++..+.+|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 699999999999999999999999763 56777777777777775
No 317
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.29 E-value=7.5e-08 Score=59.57 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=45.5
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc----------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
-+||||||||+++++..|+++|..+|.+ +.++|.|.++..+.+|+..+++...
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 78 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3699999999999999999999999865 4688999999999999987766443
No 318
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.29 E-value=1e-07 Score=63.39 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=48.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc--------------------ceeEEEecCCccchHHHHHhhhhhhccCCC
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA--------------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEI 66 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~--------------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~ 66 (168)
-++|||||||+++++..|+++|..||.+ +.++|.|.++..+.+|+..+++.......+
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3699999999999999999999999964 367888988889999998877766544333
No 319
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.3e-07 Score=60.59 Aligned_cols=51 Identities=6% Similarity=0.008 Sum_probs=41.7
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQS 58 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~ 58 (168)
..+||||+|||++++++.|+++|+.||.+. .|+|.|.++..+.+|+..++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 457999999999999999999999999764 466777777777887766554
No 320
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.28 E-value=1.9e-07 Score=57.11 Aligned_cols=42 Identities=12% Similarity=-0.071 Sum_probs=34.8
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc----------ceeEEEecCCccch
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA----------GVLEVVTTRPTINN 50 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~ 50 (168)
-.||||||||++++++.|++.|++||.+ +.++|.|.++..+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ 62 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH
Confidence 3699999999999999999999999976 45666676666554
No 321
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.28 E-value=1.4e-07 Score=61.74 Aligned_cols=55 Identities=9% Similarity=-0.178 Sum_probs=43.5
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhccC
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVDM 64 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~~ 64 (168)
++|||+|||+++++..|++.|+.||.+. .++|.|.++..+.+|+..+++......
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 5999999999999999999999999764 456666666688888877666544333
No 322
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.28 E-value=3.7e-07 Score=57.05 Aligned_cols=47 Identities=15% Similarity=-0.045 Sum_probs=39.9
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc--------------ceeEEEecCCccchHHHH
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA--------------GVLEVVTTRPTINNKAME 54 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~--------------~~~~v~~~~~~~~~~a~~ 54 (168)
.-+||||||||++++++.|++.|+.||.+ +.++|.|.++..+.+|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 34799999999999999999999999976 456677777778888876
No 323
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2.7e-07 Score=58.85 Aligned_cols=54 Identities=13% Similarity=-0.050 Sum_probs=44.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
-+||||+|||++++++.|+++|..||.+. .++|.|.+...+.+|+..+++....
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 36999999999999999999999999764 4667777777888888877665543
No 324
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=2.3e-07 Score=58.29 Aligned_cols=53 Identities=9% Similarity=-0.160 Sum_probs=41.9
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc----------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG----------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~----------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.-.||||+|||+++++..|+++|..|| +. .++|.|.++..+.+|+ .++.....
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 347999999999999999999999997 43 5677777777888888 65554433
No 325
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.27 E-value=1.4e-07 Score=62.37 Aligned_cols=56 Identities=5% Similarity=-0.180 Sum_probs=44.3
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhcc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
..+||||||||++++++.|+++|+.||.+. .|+|.|.+...+.+|+..+++.....
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346999999999999999999999999764 45666666678888887766655433
No 326
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=2.2e-07 Score=58.21 Aligned_cols=47 Identities=15% Similarity=-0.116 Sum_probs=37.7
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHH
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAME 54 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~ 54 (168)
.-++|||+|||+++++..|+++|..||.+.. ++|.|.++..+.+|+.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 3469999999999999999999999998654 5555555556777775
No 327
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=3.2e-07 Score=58.73 Aligned_cols=51 Identities=8% Similarity=-0.101 Sum_probs=44.7
Q ss_pred EEEEE--CCceeeeecccchhHhhhhcccc---------eeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYS--GSGGWWFESKCPSHEVRLAVEAG---------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfv--g~l~~~~~~~~l~~~f~~~g~~~---------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
.+||| |||+++++++.|++.|++||.+. .+||.|.++..+.+|+..+++..
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 58999 88999999999999999999764 57888888889999998877754
No 328
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.26 E-value=3e-07 Score=59.63 Aligned_cols=52 Identities=10% Similarity=-0.094 Sum_probs=42.5
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
++|||+|||+++++..|++.|+.||.+. .++|.|.+...+.+|+..+++...
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 101 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 101 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 6999999999999999999999999764 566667677788888877666543
No 329
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=1.3e-07 Score=59.20 Aligned_cols=64 Identities=13% Similarity=-0.108 Sum_probs=49.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc------------ceeEEEecCCccchHHHHHhhhhhhccCCCCCCCC
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA------------GVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPH 71 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~------------~~~~v~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 71 (168)
.-+||||+|||+++++..|+++|+.++.+ +.++|.|.++..+.+|+..+++.......+....+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34699999999999999999999987642 46888888888999999887776544444433333
No 330
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=1.6e-07 Score=59.08 Aligned_cols=47 Identities=11% Similarity=-0.170 Sum_probs=39.7
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHH
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEE 55 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~ 55 (168)
-.+|||+|||+++++..|+++|+.||.+. .++|.|..+..+.+|+..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 46999999999999999999999999643 477777777788888765
No 331
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.24 E-value=8e-08 Score=61.08 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=38.4
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEA 56 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~ 56 (168)
.-+||||||||+++++..|++.|+.||.+. .++|.|.+...+.+|+...
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 346999999999999999999999999764 4566666666777777653
No 332
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.24 E-value=3.3e-07 Score=58.85 Aligned_cols=53 Identities=8% Similarity=-0.162 Sum_probs=43.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
.-+||||+|||++++++.|++.|+.||.+. .++|.|.++..+.+++..+++..
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 347999999999999999999999999753 46777777778888887765543
No 333
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.24 E-value=1.9e-07 Score=63.04 Aligned_cols=53 Identities=8% Similarity=-0.052 Sum_probs=43.8
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
-.+|||||||++++++.|+++|+.||.+. .++|.|.+...+.+|+..+++...
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46999999999999999999999999763 467777777788888877666543
No 334
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.8e-07 Score=59.88 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=42.0
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc-----------------ceeEEEecCCccchHHHHHh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA-----------------GVLEVVTTRPTINNKAMEEA 56 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~-----------------~~~~v~~~~~~~~~~a~~~~ 56 (168)
.-+||||||||++++++.|++.|++||.+ +.++|.|.++..+.+|+..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 34799999999999999999999999865 36778888888888888776
No 335
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.23 E-value=5.8e-07 Score=61.05 Aligned_cols=55 Identities=5% Similarity=-0.180 Sum_probs=45.4
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc-----------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG-----------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~-----------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
.+.+||||||++.++++.|++.|++||.+. .++|.|.+...+.+|+..+++....
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 467899999999999999999999999764 4666677777888888887776653
No 336
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=2.1e-07 Score=57.27 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=41.4
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
++|||+|||++++++.|++.|+.||.+. .++|.|.++..+.+|+..+++..
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 82 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ 82 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe
Confidence 5999999999999999999999999764 46666767677888887655443
No 337
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.22 E-value=2.2e-07 Score=62.66 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=42.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
-+||||+|||+++++..|+++|+.||.+. .|+|.|.++..+.+|+..++.....
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 36999999999999999999999999764 4556666666788888776655433
No 338
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.22 E-value=6.4e-07 Score=58.20 Aligned_cols=54 Identities=9% Similarity=-0.112 Sum_probs=45.9
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------c-eeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------G-VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~-~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
+-.||||||++.++++.|.++|++||.+ + .|+|.|.+...+..|+..+++....
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~ 88 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIY 88 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCB
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 4478999999999999999999999987 3 3788888888899999888777644
No 339
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.20 E-value=4.8e-07 Score=56.99 Aligned_cols=52 Identities=10% Similarity=-0.116 Sum_probs=41.8
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce--------------eEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV--------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~--------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
-++|||+|||+.+++..|+++|..||.+.. ++|.|.++..+.+|+..+++..
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP 94 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 469999999999999999999999997644 5556666667788887665544
No 340
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.20 E-value=2.1e-07 Score=61.43 Aligned_cols=53 Identities=8% Similarity=-0.071 Sum_probs=41.3
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.+||||+|||+++++..|++.|+.||.+.. ++|.|.++..+.+|+..+++...
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 358999999999999999999999997744 56666666677777766555443
No 341
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=1.3e-05 Score=51.21 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=57.1
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCcee--Eeeecc
Q psy40 85 TVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV--VDKIVC 162 (168)
Q Consensus 85 ~~~~l~V~nlp~~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~i--v~~a~~ 162 (168)
..+-|.|-+.|+-.-..+..+|++||+|.+..... + ...-.|.|.++.+|++||..++..|.|.-+ |.+...
T Consensus 23 ~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 23 DDTWVTVFGFPQASASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCC
Confidence 34678899999933566777899999999887632 1 348999999999999999999999986444 887643
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.20 E-value=3.1e-07 Score=55.60 Aligned_cols=51 Identities=8% Similarity=-0.059 Sum_probs=42.8
Q ss_pred eEEEEECCceeeeecccchhHhhhh----c-------c---------cceeEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLA----V-------E---------AGVLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~----g-------~---------~~~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
-+||||||||+++++++|++.|+.+ | . .+.++|.|.++..+.+|+ .+++..
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 3699999999999999999999999 6 3 356888898888888888 655544
No 343
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=7.1e-07 Score=56.92 Aligned_cols=50 Identities=8% Similarity=-0.102 Sum_probs=41.4
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
+||||+|||+++++..|+++|+.||.+. .++|.|.+...+.+|+ .+++..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 90 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR 90 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE
Confidence 5999999999999999999999998753 5677777777888888 655443
No 344
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.18 E-value=6.3e-07 Score=54.26 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=37.1
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHH
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAME 54 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~ 54 (168)
..++|||+|||+++++..|++.|+.||.+.. ++|.|.++..+.+|+.
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence 3469999999999999999999999998654 4555555556666664
No 345
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.18 E-value=6.2e-07 Score=61.10 Aligned_cols=52 Identities=12% Similarity=-0.202 Sum_probs=42.0
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.||||+|||+.+++..|+++|..||.+. .|+|.|..+..+.+|+..+++...
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999999764 455566666678888877666543
No 346
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.17 E-value=6.2e-07 Score=60.65 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=40.9
Q ss_pred EEEEECCceeeeecccchhHhhhhc--ccc---------------eeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAV--EAG---------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g--~~~---------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
.+|||||||++++++.|+++|+.|| .+. .++|.|.++..+.+|+..+++..
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~ 123 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV 123 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 5999999999999999999999999 554 45666666667888887755544
No 347
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=3.3e-07 Score=59.50 Aligned_cols=45 Identities=13% Similarity=-0.180 Sum_probs=39.1
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHH
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAME 54 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~ 54 (168)
.+|||||||+++++..|+++|..||.+. .++|.|.++..+.+|+.
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 6999999999999999999999999753 47788888778888875
No 348
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.17 E-value=5.3e-07 Score=62.26 Aligned_cols=51 Identities=10% Similarity=-0.078 Sum_probs=42.2
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
+||||+|||+.+++..|+++|..||.+. .|+|.|.++..+.+|+..+++..
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~ 153 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP 153 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCE
Confidence 6999999999999999999999999764 46677777778888887665544
No 349
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.16 E-value=3.8e-07 Score=58.74 Aligned_cols=46 Identities=9% Similarity=-0.163 Sum_probs=37.3
Q ss_pred eEEEEECCceeeeecccchhHhhhhcc---cc--------------eeEEEecCCccchHHHH
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVE---AG--------------VLEVVTTRPTINNKAME 54 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~---~~--------------~~~v~~~~~~~~~~a~~ 54 (168)
-.||||+|||+++++++|+++|+.||. +. .++|.|.++..+.+|+.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 469999999999999999999999988 33 45666666667777765
No 350
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=1e-06 Score=56.15 Aligned_cols=52 Identities=2% Similarity=-0.150 Sum_probs=41.3
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccce--------------eEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGV--------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~--------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
-++|||+|||+++++..|++.|+.||.+.. ++|.|.++..+.+|+..+++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 359999999999999999999999997654 5566666667777777655544
No 351
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.15 E-value=4.1e-07 Score=55.37 Aligned_cols=51 Identities=6% Similarity=-0.186 Sum_probs=42.5
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
+||||||||++++++.|++.|+++ .+ +.++|.|.++..+.+|+..+++...
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 65 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF 65 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 589999999999999999999998 54 4567778788888888887766543
No 352
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.14 E-value=6.1e-07 Score=64.45 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=40.6
Q ss_pred eEEEEECCceeeeecccchhHhhhhc--ccce---------------eEEEecCCccchHHHHHhhhhh
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAV--EAGV---------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g--~~~~---------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
..|||||||++++++..|+++|+.|| .+.. +||.|.+...+.+|+..++...
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 136 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe
Confidence 45899999999999999999999999 6544 5666666667777776655444
No 353
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=5.5e-07 Score=58.49 Aligned_cols=47 Identities=9% Similarity=-0.124 Sum_probs=36.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc------------------ceeEEEecCCccchHHHHH
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA------------------GVLEVVTTRPTINNKAMEE 55 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~------------------~~~~v~~~~~~~~~~a~~~ 55 (168)
-.+|||+||||++++++|+++|+.||.+ +.++|.|.++..+.+|+..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 3699999999999999999999999864 2355555555566666643
No 354
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=4.1e-07 Score=58.18 Aligned_cols=47 Identities=4% Similarity=-0.278 Sum_probs=37.2
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc-c--------------eeEEEecCCccchHHHHH
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA-G--------------VLEVVTTRPTINNKAMEE 55 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~-~--------------~~~v~~~~~~~~~~a~~~ 55 (168)
-.||||+|||+++++..|+++|+.||.+ . .++|.|.++..+.+|+..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 3699999999999999999999999987 3 355566655566666643
No 355
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.13 E-value=1.2e-06 Score=57.29 Aligned_cols=56 Identities=5% Similarity=-0.165 Sum_probs=47.5
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce-----------eEEEecCCccchHHHHHhhhhhhcc
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV-----------LEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~-----------~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
.+-.|||+||++.++++.|.+.|++||.+.. ++|.|.++..+.+|++.+++.....
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 4458999999999999999999999997642 7788888889999999988876544
No 356
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.10 E-value=3.6e-07 Score=60.43 Aligned_cols=45 Identities=11% Similarity=-0.128 Sum_probs=36.1
Q ss_pred EEEEECCceeeeecccchhHhhhhcc---cc--------------eeEEEecCCccchHHHH
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVE---AG--------------VLEVVTTRPTINNKAME 54 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~---~~--------------~~~v~~~~~~~~~~a~~ 54 (168)
.+|||||||++++++.|++.|+.||. +. .++|.|.++..+.+|+.
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 58999999999999999999999998 44 45555555556666664
No 357
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.10 E-value=1e-06 Score=58.13 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=43.1
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHHhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEEAQSE 59 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~~~~~ 59 (168)
.-.+|||+|||+.+++..|+++|+.||.+ +.++|.|.++..+.+|+..+++.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999999999999975 35777787877888888766543
No 358
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.08 E-value=1.2e-06 Score=57.13 Aligned_cols=46 Identities=11% Similarity=-0.119 Sum_probs=39.3
Q ss_pred EEEEECCceeeeecccchhHhhhhccc---------------ceeEEEecCCccchHHHHH
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA---------------GVLEVVTTRPTINNKAMEE 55 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~---------------~~~~v~~~~~~~~~~a~~~ 55 (168)
.+|||||||++++++.|++.|+.|+-+ +.++|.|.++..+.+|+..
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 599999999999999999999999432 3578888888888888864
No 359
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.07 E-value=1.1e-06 Score=54.93 Aligned_cols=52 Identities=10% Similarity=-0.151 Sum_probs=39.6
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.-.+|||+|||++++++.|+++|+.|+ +. .++|.|.++..+.+|+ .+++...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 80 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL 80 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE
Confidence 347999999999999999999999995 54 4556666666777777 5554443
No 360
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.07 E-value=5.2e-07 Score=58.41 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=38.7
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce---------------eEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV---------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~---------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
+||||||||++++++.|++.|+.||.+.. ++|.|.+...+.+|+ .+++..
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~ 101 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV 101 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe
Confidence 59999999999999999999999997754 455555555677777 444433
No 361
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=4.1e-07 Score=57.07 Aligned_cols=46 Identities=11% Similarity=-0.159 Sum_probs=36.2
Q ss_pred eeEEEEECCceeeeecccchhHhhhhccc-------------ceeEEEecCCccchHHH
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEA-------------GVLEVVTTRPTINNKAM 53 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~-------------~~~~v~~~~~~~~~~a~ 53 (168)
.-.+|||+|||+++++++|+++|+.||.+ +.++|.|.++..+.+|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 34699999999999999999999999943 23555566666777777
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.06 E-value=8.7e-07 Score=63.94 Aligned_cols=53 Identities=11% Similarity=-0.121 Sum_probs=45.4
Q ss_pred eEEEEECCceeee---------ecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 9 VSTVYSGSGGWWF---------ESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 9 ~~tlfvg~l~~~~---------~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.+|||||||++.+ ++..|++.|++||++ +.+||.|.....+..|+..+++...
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3599999999998 799999999999987 4577888888899999988877665
No 363
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.03 E-value=4.2e-07 Score=60.33 Aligned_cols=43 Identities=9% Similarity=-0.217 Sum_probs=34.0
Q ss_pred EEEEECCceeeeecccchhHhhhhcccce--------------eEEEecCCccchHHH
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGV--------------LEVVTTRPTINNKAM 53 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~--------------~~v~~~~~~~~~~a~ 53 (168)
.+|||+|||+++++++|+++|+.|| +.. ++|.|.++..+.+|+
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH
Confidence 4899999999999999999999998 333 555555555666666
No 364
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=4.1e-07 Score=55.61 Aligned_cols=51 Identities=12% Similarity=-0.031 Sum_probs=38.9
Q ss_pred eeEEEEECCceeeeecccchhHhhhhcccce--------------eEEEecCCccchHHHHHhhhhh
Q psy40 8 VVSTVYSGSGGWWFESKCPSHEVRLAVEAGV--------------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 8 ~~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~--------------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
.-.+|||+|||+++++..|++.|+.+ .+.. ++|.|.++..+.+|+. +++..
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~ 73 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREY 73 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCce
Confidence 45799999999999999999999998 6544 4555555557777776 54443
No 365
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=2e-06 Score=53.21 Aligned_cols=52 Identities=10% Similarity=-0.051 Sum_probs=43.1
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
-+||||||+ ++++..|+++|+.||.+ +.++|.|.++..+.+|+..+++....
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 369999996 89999999999999975 46778888888999999887665543
No 366
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.00 E-value=1.2e-06 Score=68.75 Aligned_cols=54 Identities=7% Similarity=-0.067 Sum_probs=43.5
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccc---------------eeEEEecCCccchHHHHHhhhhhhc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAG---------------VLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~---------------~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
..||||||||+.+++..|.++|..||.+. .|||.|..+..+..|+..+++....
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 36999999999999999999999999764 4566666666888888776665543
No 367
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=1.6e-06 Score=52.64 Aligned_cols=33 Identities=9% Similarity=-0.147 Sum_probs=28.6
Q ss_pred eEEEEECCceeeeecccchhHhhhhcccceeEE
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEV 41 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~v 41 (168)
-+||||||||++++++.|++.|+.||.+..+.+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 37 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI 37 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEE
Confidence 369999999999999999999999998754433
No 368
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.92 E-value=3.3e-06 Score=53.58 Aligned_cols=43 Identities=12% Similarity=-0.174 Sum_probs=35.5
Q ss_pred EEEEECCceeeeecccchhHhhhhccc--------------ceeEEEecCCccchHHH
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEA--------------GVLEVVTTRPTINNKAM 53 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~--------------~~~~v~~~~~~~~~~a~ 53 (168)
.+|||+|||+++++++|+++|+.| .+ +.++|.|.++..+.+|+
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 73 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH
Confidence 499999999999999999999998 44 34666666666777777
No 369
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.85 E-value=0.00013 Score=44.55 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=53.6
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCC--ceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGA--KRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~--~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
.+|-|++||+ +|++++.+.++....+...+.+..+.+.+ .-.-|||.|.+.+++..-.+ ++++.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999999 99999999999998887777766553332 23679999999999888887 8887763
No 370
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.84 E-value=4.7e-06 Score=53.82 Aligned_cols=53 Identities=9% Similarity=-0.047 Sum_probs=43.5
Q ss_pred eEEEEECCceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhhcc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEEVD 63 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~~~ 63 (168)
-+||||||+ +++++.|++.|+.||.+ +.++|.|.+...+.+|+..+++.....
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 369999995 69999999999999976 467888888889999998877665433
No 371
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.78 E-value=9e-06 Score=52.87 Aligned_cols=38 Identities=5% Similarity=-0.091 Sum_probs=33.0
Q ss_pred EEEEECCc----eeeeecccchhHhhhhcccceeEEEecCCc
Q psy40 10 STVYSGSG----GWWFESKCPSHEVRLAVEAGVLEVVTTRPT 47 (168)
Q Consensus 10 ~tlfvg~l----~~~~~~~~l~~~f~~~g~~~~~~v~~~~~~ 47 (168)
.+|||||| ||.+++..|+++|+.||++..+.++.++.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T 44 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS 44 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC
Confidence 48999999 999999999999999999877766665555
No 372
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=9.6e-05 Score=45.95 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=57.6
Q ss_pred CcEEEEeCCCC-C-CH----HHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-E
Q psy40 86 VKKMFVGGLKD-Q-EE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-V 157 (168)
Q Consensus 86 ~~~l~V~nlp~-~-t~----~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v 157 (168)
.++|++.||+. + .. +.++.+|.+|++...-...+.- .-..|.|.+.++|.+|-. +++..+.|+.+ |
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 37899999988 4 43 4568999999987776665432 146799999999999997 99999999999 9
Q ss_pred eeecc
Q psy40 158 DKIVC 162 (168)
Q Consensus 158 ~~a~~ 162 (168)
=++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 88865
No 373
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.71 E-value=8.3e-06 Score=56.96 Aligned_cols=46 Identities=13% Similarity=-0.163 Sum_probs=38.1
Q ss_pred EEEEECCceeeeecccchhHhhhhcccc--------------eeEEEecCCccchHHHHH
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAG--------------VLEVVTTRPTINNKAMEE 55 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~--------------~~~v~~~~~~~~~~a~~~ 55 (168)
+||||||||+++++..|++.|+.||.+. .|+|.|..+..+.+|+..
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 6899999999999999999999999754 566667666677777744
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.67 E-value=1.2e-05 Score=60.94 Aligned_cols=52 Identities=6% Similarity=-0.158 Sum_probs=46.0
Q ss_pred EEEEECC--ceeeeecccchhHhhhhccc---------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 10 STVYSGS--GGWWFESKCPSHEVRLAVEA---------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 10 ~tlfvg~--l~~~~~~~~l~~~f~~~g~~---------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
++||||| |++.++++.|++.|++||++ +.+||.+.+...+.+|++.+++...
T Consensus 19 ~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 5999999 68999999999999999975 4578999999999999999887765
No 375
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.60 E-value=0.00027 Score=43.29 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=44.1
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~ 145 (168)
.+.+++ ++|. +-..||.++|+.||. ..|+.+.|. -|||.|.+++.|..|+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 366777 9999 999999999999994 467777764 69999999999999997
No 376
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.57 E-value=0.00011 Score=47.66 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=54.6
Q ss_pred cEEEEeCCCCCCHHHHHHHHhcCCcEeE-EEEecc------------CCCC-CceeEEEEEEcCHHHHHHHHhhCCceeC
Q psy40 87 KKMFVGGLKDQEEDDLREYFSQFGTIES-VNMVTN------------KETG-AKRGFAFIEFNDYDVVDKIRGFAFIEFN 152 (168)
Q Consensus 87 ~~l~V~nlp~~t~~~L~~~F~~~G~v~~-v~i~~d------------~~tg-~~~g~afV~f~~~~~a~~ai~~~~~~i~ 152 (168)
.-|.|-+.|+.....+.++|++||.|.+ ....++ +..+ ...+.-.|+|.++.+|.+||..++..|+
T Consensus 8 ~~VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~ 87 (132)
T 3p3d_A 8 LAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFN 87 (132)
T ss_dssp CEEEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEET
T ss_pred eEEEEEecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeC
Confidence 4577889988445566678899999865 222110 0000 0245789999999999999999999999
Q ss_pred Ccee-Eeeecc
Q psy40 153 DYDV-VDKIVC 162 (168)
Q Consensus 153 G~~i-v~~a~~ 162 (168)
|..| |.+..+
T Consensus 88 G~mIGV~Py~~ 98 (132)
T 3p3d_A 88 GVLLGVIPYTK 98 (132)
T ss_dssp TEECEEEECCH
T ss_pred cEEEEEEECCH
Confidence 9966 887754
No 377
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.40 E-value=0.0002 Score=44.01 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=43.7
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~ 145 (168)
+.++| ++|. +-..||.++|+.|| -..|+.+.|. -|||.|.+++.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 45666 9999 99999999999999 4578888764 69999999999999998
No 378
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.98 E-value=0.0012 Score=40.49 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=48.1
Q ss_pred CcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCC--ceeEEEEEEcCHHHHHHHHh-hCCceeC
Q psy40 86 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGA--KRGFAFIEFNDYDVVDKIRG-FAFIEFN 152 (168)
Q Consensus 86 ~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~--~~g~afV~f~~~~~a~~ai~-~~~~~i~ 152 (168)
+-+|.|++||+ +|++++.+.++..-++..-+.+..+.+.+ .-.-|||.|.+.++...-.+ .+++.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45799999999 99999888887765554433333322221 12579999999999988887 8887663
No 379
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.89 E-value=0.00062 Score=53.47 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=40.9
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhh
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~ 146 (168)
+.|+|. .|. .++.+|.++|++||.|.++-.-.++ .-||.|+|.+.+++..+++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 789998 688 9999999999999999999776543 25999999999999888753
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.81 E-value=0.00032 Score=45.11 Aligned_cols=46 Identities=2% Similarity=-0.351 Sum_probs=37.7
Q ss_pred EEEEECCceee-eecccchhHhhhhcccce---------eEEEecC-CccchHHHHH
Q psy40 10 STVYSGSGGWW-FESKCPSHEVRLAVEAGV---------LEVVTTR-PTINNKAMEE 55 (168)
Q Consensus 10 ~tlfvg~l~~~-~~~~~l~~~f~~~g~~~~---------~~v~~~~-~~~~~~a~~~ 55 (168)
+-|||+||++. ++++.|++.|+.+|++.. ++|.|.+ +..+..++.+
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ 75 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKD 75 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHH
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHH
Confidence 57999999999 999999999999998764 5777877 4566666654
No 381
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.47 E-value=0.00086 Score=42.27 Aligned_cols=53 Identities=8% Similarity=-0.158 Sum_probs=37.9
Q ss_pred EEEEECCceeeee-----------cccchhHhhhhcccce-----------eEEEecCCccchHHHHHhhhhhhc
Q psy40 10 STVYSGSGGWWFE-----------SKCPSHEVRLAVEAGV-----------LEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 10 ~tlfvg~l~~~~~-----------~~~l~~~f~~~g~~~~-----------~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
++|+|.||..... ++.|+++|.+||.+.. ++|.|.++..+.+|+..+++....
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5899999943322 4689999999998754 555566666788888777665543
No 382
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.18 E-value=0.0028 Score=39.53 Aligned_cols=59 Identities=10% Similarity=-0.147 Sum_probs=39.5
Q ss_pred ccccceeEEEEECCcee-----eeecccchhHhhhhcccceeEEE----------------ecCCccchHHHHHhhhhhh
Q psy40 3 KLSGIVVSTVYSGSGGW-----WFESKCPSHEVRLAVEAGVLEVV----------------TTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 3 ~~~~~~~~tlfvg~l~~-----~~~~~~l~~~f~~~g~~~~~~v~----------------~~~~~~~~~a~~~~~~~~~ 61 (168)
++.+.--++|++.|+.. +-.+..|+++|++||.+..+.|. |.++..+.+|+..+++...
T Consensus 2 ~i~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 2 AMGKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp CGGGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 34444446899999962 22578899999999986555554 4444467777777666654
No 383
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=94.80 E-value=0.0071 Score=37.58 Aligned_cols=48 Identities=13% Similarity=-0.116 Sum_probs=35.4
Q ss_pred ECCceeeeecccchhHh------------hhhccc--------------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 14 SGSGGWWFESKCPSHEV------------RLAVEA--------------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 14 vg~l~~~~~~~~l~~~f------------~~~g~~--------------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
+++|++.+++..|.+.| ++||.+ +.++|.|.++..+.+|+..+++...
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 57888888888777666 999975 4566667777788888887776553
No 384
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=93.81 E-value=0.028 Score=34.91 Aligned_cols=51 Identities=14% Similarity=-0.162 Sum_probs=36.1
Q ss_pred EEEECCc--eeeee--------cccchhHhhhhccc-----------------ceeEEEecCCccchHHHHHhhhhhh
Q psy40 11 TVYSGSG--GWWFE--------SKCPSHEVRLAVEA-----------------GVLEVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 11 tlfvg~l--~~~~~--------~~~l~~~f~~~g~~-----------------~~~~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
.|.+.|+ |..+. ++.|+++|++||.+ +.++|.|.++..+.+|+..+++...
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5667776 33333 35899999999975 4566777777788888888777654
No 385
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.65 E-value=0.026 Score=34.79 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=29.3
Q ss_pred eeeecccchhHhhhhccc----------ceeEEEecCCccchHHHHH
Q psy40 19 WWFESKCPSHEVRLAVEA----------GVLEVVTTRPTINNKAMEE 55 (168)
Q Consensus 19 ~~~~~~~l~~~f~~~g~~----------~~~~v~~~~~~~~~~a~~~ 55 (168)
..+++..|+++|++||.+ +.++|.|.++..+..|+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 446789999999999976 3567777777788888765
No 386
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.45 E-value=0.39 Score=38.28 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=44.1
Q ss_pred CCcEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hC
Q psy40 85 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FA 147 (168)
Q Consensus 85 ~~~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~ 147 (168)
....++|+ +|. +...+|.+.|+.||. ..|+.+.|. .|||.|.+.+.|..++. +.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 34677777 888 999999999999995 466766552 79999999999999997 53
No 387
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=91.88 E-value=0.068 Score=33.93 Aligned_cols=52 Identities=8% Similarity=-0.182 Sum_probs=35.4
Q ss_pred EEEEECCce--eee---ecccchhHhhhhccccee-------------------EEEecCCccchHHHHHhhhhhh
Q psy40 10 STVYSGSGG--WWF---ESKCPSHEVRLAVEAGVL-------------------EVVTTRPTINNKAMEEAQSEEE 61 (168)
Q Consensus 10 ~tlfvg~l~--~~~---~~~~l~~~f~~~g~~~~~-------------------~v~~~~~~~~~~a~~~~~~~~~ 61 (168)
++|++.|+- .++ .++.|+++|++||.+..+ +|.|.++..+.+|+..+++...
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 488999983 222 246788999999986544 4555555577788877766543
No 388
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=91.22 E-value=0.069 Score=33.69 Aligned_cols=40 Identities=10% Similarity=-0.104 Sum_probs=30.7
Q ss_pred cccchhHhhhhccc-----------ceeEEEecCCccchHHHHHhhhhhhc
Q psy40 23 SKCPSHEVRLAVEA-----------GVLEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 23 ~~~l~~~f~~~g~~-----------~~~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
+++|+++|++||.+ +.++|.|.++..+.+|+..+++....
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44778999999986 55677777777888888887776543
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.31 E-value=0.14 Score=31.65 Aligned_cols=78 Identities=8% Similarity=0.014 Sum_probs=49.9
Q ss_pred eEEEEECCceeeeecccchhHhhh---hcc--c-------ceeEEEecCCccchHHHHHhhhhhhccC-CCCCCCCCCCc
Q psy40 9 VSTVYSGSGGWWFESKCPSHEVRL---AVE--A-------GVLEVVTTRPTINNKAMEEAQSEEEVDM-EIPGPPHMDKL 75 (168)
Q Consensus 9 ~~tlfvg~l~~~~~~~~l~~~f~~---~g~--~-------~~~~v~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 75 (168)
-.+|.|-|||.++.++.|.-+|+. -|. + ..|.|.|.++..+++.+.+ ..+.... .+..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k--~~H~L~~~~LsV------- 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ--ADHELHGAQLSL------- 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC--SCCBSSSSBCEE-------
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC--CcceecCeEEEE-------
Confidence 369999999999999999999997 221 1 3467778888888887743 1111111 1111
Q ss_pred ccCCCCCCCCCcEEEEeCCCC-CC
Q psy40 76 EIGKPEANATVKKMFVGGLKD-QE 98 (168)
Q Consensus 76 ~~~~~~~~~~~~~l~V~nlp~-~t 98 (168)
.+.......+|++.+||+ ++
T Consensus 79 ---~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 ---RPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp ---EECCCCCCCCCCCCSCCCCCC
T ss_pred ---EcCCCCCcceEeeecCCCCCC
Confidence 112233446788999988 65
No 390
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.28 E-value=0.043 Score=33.17 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=37.9
Q ss_pred cceeEEEEECCcee----eeec----ccchhHhhhhcccce-------eEEEecCCccchHHHHHhhhhhhc
Q psy40 6 GIVVSTVYSGSGGW----WFES----KCPSHEVRLAVEAGV-------LEVVTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 6 ~~~~~tlfvg~l~~----~~~~----~~l~~~f~~~g~~~~-------~~v~~~~~~~~~~a~~~~~~~~~~ 62 (168)
|.-=+||+|...+. ++-+ ..|.+.|.+||++.. ++|.|.+..++.+|+. +++....
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeC
Confidence 34446888887662 2323 468899999997765 5677888778888886 6655533
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=89.64 E-value=0.15 Score=31.24 Aligned_cols=46 Identities=9% Similarity=-0.127 Sum_probs=38.1
Q ss_pred EEEECCceeeeecccchhHhhhhccc-------ceeEEEecCCccchHHHHHh
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEA-------GVLEVVTTRPTINNKAMEEA 56 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~-------~~~~v~~~~~~~~~~a~~~~ 56 (168)
-||+=+.|..+...+|.++|+.||.+ ..|++++.++..+..++...
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhc
Confidence 45555999999999999999999865 36888999998888888754
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.57 E-value=0.14 Score=31.36 Aligned_cols=46 Identities=9% Similarity=-0.128 Sum_probs=38.3
Q ss_pred EEEECCceeeeecccchhHhhhhccc-------ceeEEEecCCccchHHHHHh
Q psy40 11 TVYSGSGGWWFESKCPSHEVRLAVEA-------GVLEVVTTRPTINNKAMEEA 56 (168)
Q Consensus 11 tlfvg~l~~~~~~~~l~~~f~~~g~~-------~~~~v~~~~~~~~~~a~~~~ 56 (168)
-||+=+.|..+...+|.+.|+.||.+ ..|++++.++..+..++...
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhc
Confidence 44444999999999999999999865 36899999999888888754
No 393
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.12 E-value=0.16 Score=30.88 Aligned_cols=50 Identities=6% Similarity=-0.165 Sum_probs=36.4
Q ss_pred EEEEECCceee-----eec----ccchhHhhhhcccce-------eEEEecCCccchHHHHHhhhhh
Q psy40 10 STVYSGSGGWW-----FES----KCPSHEVRLAVEAGV-------LEVVTTRPTINNKAMEEAQSEE 60 (168)
Q Consensus 10 ~tlfvg~l~~~-----~~~----~~l~~~f~~~g~~~~-------~~v~~~~~~~~~~a~~~~~~~~ 60 (168)
+||+|..++.. +-+ ..|.+.|.+||++.. ++|.|.+..++.+|+. +++..
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCee
Confidence 69999988643 222 358899999998765 5577888888888886 55554
No 394
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=58.56 E-value=23 Score=23.43 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.0
Q ss_pred CCHHHHHHHHhcCCcEe---EEEEeccCCCCCceeEEEEE
Q psy40 97 QEEDDLREYFSQFGTIE---SVNMVTNKETGAKRGFAFIE 133 (168)
Q Consensus 97 ~t~~~L~~~F~~~G~v~---~v~i~~d~~tg~~~g~afV~ 133 (168)
.|+++|+++-.+.|++. +.++..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 68999999999999874 55666664479988888764
No 395
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=53.70 E-value=6.7 Score=27.04 Aligned_cols=40 Identities=8% Similarity=-0.084 Sum_probs=27.7
Q ss_pred cccchhHhhhhcccceeEE-------------------EecCCccchHHHHHhhhhhhc
Q psy40 23 SKCPSHEVRLAVEAGVLEV-------------------VTTRPTINNKAMEEAQSEEEV 62 (168)
Q Consensus 23 ~~~l~~~f~~~g~~~~~~v-------------------~~~~~~~~~~a~~~~~~~~~~ 62 (168)
+..|.++|.+||.+..+.| .+.+...+.+|+..+++....
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 4578889999998765555 455555777888777766543
No 396
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=50.49 E-value=1.8 Score=20.09 Aligned_cols=13 Identities=23% Similarity=0.159 Sum_probs=10.3
Q ss_pred eeEEEEECCceee
Q psy40 8 VVSTVYSGSGGWW 20 (168)
Q Consensus 8 ~~~tlfvg~l~~~ 20 (168)
-++|||||+.|..
T Consensus 4 qvrtiwvggtpee 16 (36)
T 2ki0_A 4 QVRTIWVGGTPEE 16 (36)
T ss_dssp SCCCCCBCCCHHH
T ss_pred eeEEEEecCCHHH
Confidence 4689999999843
No 397
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=46.47 E-value=64 Score=21.66 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCHHHHHHHH--hcCCcEeEEEEeccCCCCCceeEEEEEEcCH-HHHHHHHh
Q psy40 97 QEEDDLREYF--SQFGTIESVNMVTNKETGAKRGFAFIEFNDY-DVVDKIRG 145 (168)
Q Consensus 97 ~t~~~L~~~F--~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~-~~a~~ai~ 145 (168)
.+..+|++.| ..|..+. ++...++ .-+.|++.|.|.+. .-...|+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3457899977 9998765 4444443 24789999999663 33444444
No 398
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.79 E-value=53 Score=18.18 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=39.0
Q ss_pred EEEEeCCCC--CCHHHHHHHHhcCC-----cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHh-hCCceeCCcee-Ee
Q psy40 88 KMFVGGLKD--QEEDDLREYFSQFG-----TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG-FAFIEFNDYDV-VD 158 (168)
Q Consensus 88 ~l~V~nlp~--~t~~~L~~~F~~~G-----~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~-~~~~~i~G~~i-v~ 158 (168)
++|+..=-. +...+|...+..-+ .|-.+.+.. .|.||+-... .+..+++ +.+..+.|+++ ++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 455532222 66677777776544 355666632 2788887764 4777777 88889999999 88
Q ss_pred eec
Q psy40 159 KIV 161 (168)
Q Consensus 159 ~a~ 161 (168)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=36.91 E-value=14 Score=28.99 Aligned_cols=30 Identities=7% Similarity=-0.352 Sum_probs=23.2
Q ss_pred EEEEECCceeeeecccchhHhhhhcccceeE
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVEAGVLE 40 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~~~~~~ 40 (168)
++|||. .|..+.+.+|.++|.+||.+..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~ 83 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHF 83 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEE
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEE
Confidence 489996 799999999999999999986544
No 400
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=34.79 E-value=26 Score=22.62 Aligned_cols=26 Identities=8% Similarity=0.008 Sum_probs=22.8
Q ss_pred EEEEECCceeeeecccchhHhhhhcc
Q psy40 10 STVYSGSGGWWFESKCPSHEVRLAVE 35 (168)
Q Consensus 10 ~tlfvg~l~~~~~~~~l~~~f~~~g~ 35 (168)
++|||.|++|.+-+++-.+.|+.|-.
T Consensus 18 n~lf~~g~~~r~L~~dei~~f~~y~~ 43 (149)
T 1f32_A 18 NQVFVANLPWTMLEGDDIQVGKEFAA 43 (149)
T ss_dssp TEEEETTEEEEECCGGGHHHHHHHHH
T ss_pred ceeEecCceeecccchhhHHHHHHHH
Confidence 69999999999999988888888654
No 401
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=32.71 E-value=76 Score=24.24 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=39.6
Q ss_pred EEEeCCCC-CC----HHHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEcCHHHHHHHHhhCCceeCCce
Q psy40 89 MFVGGLKD-QE----EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYD 155 (168)
Q Consensus 89 l~V~nlp~-~t----~~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~ai~~~~~~i~G~~ 155 (168)
-+|||++. .. ...+.++..+||.|-.+++.. --+|.-.+.+.+..++.-+...+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 46899876 42 356777788999998887731 345777888888888864444444443
No 402
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=32.39 E-value=78 Score=18.58 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=20.5
Q ss_pred cEeEEEEeccCCCCCceeEEEEEEcC
Q psy40 111 TIESVNMVTNKETGAKRGFAFIEFND 136 (168)
Q Consensus 111 ~v~~v~i~~d~~tg~~~g~afV~f~~ 136 (168)
+|.++++-+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777776656668889999999975
No 403
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.55 E-value=57 Score=23.39 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=23.6
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEE
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNM 117 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i 117 (168)
.-+.|+|+|+ ++..-|.+++.. +.+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 4578999999 999999999987 55554444
No 404
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.01 E-value=9.2 Score=25.02 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCcEeEEEEeccCCCCCceeEEEEEEc
Q psy40 100 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135 (168)
Q Consensus 100 ~~L~~~F~~~G~v~~v~i~~d~~tg~~~g~afV~f~ 135 (168)
+++.++|...|.|..-. ..+|||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 34555666666655432 23789999875
No 405
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.89 E-value=40 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=24.4
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEEEEe
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMV 118 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~ 118 (168)
....|+|||+ ++..-|.+++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 4578999999 9999999999865555555444
No 406
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=27.86 E-value=1e+02 Score=18.62 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=20.3
Q ss_pred cEeEEEEeccCCCCCceeEEEEEEcC
Q psy40 111 TIESVNMVTNKETGAKRGFAFIEFND 136 (168)
Q Consensus 111 ~v~~v~i~~d~~tg~~~g~afV~f~~ 136 (168)
.|.+|++-+-...|+-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777776655568889999999975
No 407
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.99 E-value=1.1e+02 Score=18.67 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=20.0
Q ss_pred cEeEEEEeccCCCCCceeEEEEEEcC
Q psy40 111 TIESVNMVTNKETGAKRGFAFIEFND 136 (168)
Q Consensus 111 ~v~~v~i~~d~~tg~~~g~afV~f~~ 136 (168)
.|.+|++-+-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46677766655568889999999975
No 408
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.89 E-value=35 Score=24.23 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=23.3
Q ss_pred EEEeCCCC-CCHHHHHHHHhcCCcEeEEEEe
Q psy40 89 MFVGGLKD-QEEDDLREYFSQFGTIESVNMV 118 (168)
Q Consensus 89 l~V~nlp~-~t~~~L~~~F~~~G~v~~v~i~ 118 (168)
..|+|+|+ ++...|.+++...+.+..+.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 37999999 9999999999876555555443
No 409
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.19 E-value=26 Score=21.22 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=8.4
Q ss_pred CHHHHHHHHhcCC
Q psy40 98 EEDDLREYFSQFG 110 (168)
Q Consensus 98 t~~~L~~~F~~~G 110 (168)
+...|+++|.+||
T Consensus 89 DI~~ire~fqKYG 101 (101)
T 4aj5_1 89 DIMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcC
Confidence 3456777888776
No 410
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=23.22 E-value=1e+02 Score=16.85 Aligned_cols=22 Identities=18% Similarity=0.658 Sum_probs=16.3
Q ss_pred EEEEeccCCCCCceeEEEEEEcC
Q psy40 114 SVNMVTNKETGAKRGFAFIEFND 136 (168)
Q Consensus 114 ~v~i~~d~~tg~~~g~afV~f~~ 136 (168)
.++++.++. ..+.|++.|.|++
T Consensus 21 ~arlllnrR-ps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRR-PPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBC-CSSTTEEEEEETT
T ss_pred hhhhhhccC-CCcCceEEEEEec
Confidence 456676653 4567999999987
No 411
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.93 E-value=60 Score=14.04 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=10.9
Q ss_pred CCHHHHHHHHhcC
Q psy40 97 QEEDDLREYFSQF 109 (168)
Q Consensus 97 ~t~~~L~~~F~~~ 109 (168)
-++.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 5788999998877
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.71 E-value=1.4e+02 Score=17.44 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=37.0
Q ss_pred EEEeCCCC-CCHHHHHHHHhc-CC-cEeEEEEeccCCCCCceeEEEEEEcCHHHHHHH
Q psy40 89 MFVGGLKD-QEEDDLREYFSQ-FG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143 (168)
Q Consensus 89 l~V~nlp~-~t~~~L~~~F~~-~G-~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~a 143 (168)
-|+-.++. .+..++++..+. || .|..|+.+.-+ .|.. -|+|+.....+|...
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~K--KA~V~L~~~~~a~dv 79 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGEK--KAYVKLKPEYSASEV 79 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSCE--EEEEEECTTSCHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCce--EEEEEcCCCCcHHHH
Confidence 45666788 999999998886 67 68888765533 2333 599999876665543
No 413
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.58 E-value=91 Score=21.96 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=21.3
Q ss_pred cEEEEeCCCC-CCHHHHHHHHhcCCcEeEE
Q psy40 87 KKMFVGGLKD-QEEDDLREYFSQFGTIESV 115 (168)
Q Consensus 87 ~~l~V~nlp~-~t~~~L~~~F~~~G~v~~v 115 (168)
..+.|+|+|+ ++...|.+++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 3588999999 9999888888754334333
Done!