Your job contains 1 sequence.
>psy40
GTKLSGIVVSTVYSGSGGWWFESKCPSHEVRLAVEAGVLEVVTTRPTINNKAMEEAQSEE
EVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTN
KETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDVVDKIVCKYNIEF
The BLAST search returned 25 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy40
(168 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0004237 - symbol:Hrb87F "Heterogeneous nuclear rib... 237 1.1e-19 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 233 2.2e-19 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 221 2.8e-18 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 221 2.8e-18 1
UNIPROTKB|E2QXH4 - symbol:HNRNPA2B1 "Uncharacterized prot... 211 3.2e-17 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 211 3.2e-17 1
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 212 4.0e-17 1
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 211 5.2e-17 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 211 6.3e-17 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 211 6.4e-17 1
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 211 6.4e-17 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 211 6.4e-17 1
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 211 6.4e-17 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 211 6.4e-17 1
FB|FBgn0004903 - symbol:Rb97D "Ribonuclear protein at 97D... 215 6.5e-17 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 208 6.7e-17 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 210 7.9e-17 1
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 212 9.3e-17 1
UNIPROTKB|F1M6S2 - symbol:F1M6S2 "Uncharacterized protein... 206 1.1e-16 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 205 1.8e-16 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 204 1.8e-16 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 204 1.8e-16 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 207 1.8e-16 1
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 203 2.5e-16 1
UNIPROTKB|F1LUM4 - symbol:F1LUM4 "Uncharacterized protein... 200 4.7e-16 1
UNIPROTKB|F1LYB2 - symbol:F1LYB2 "Uncharacterized protein... 200 4.7e-16 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 201 5.2e-16 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 201 5.4e-16 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 204 5.5e-16 1
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 205 6.0e-16 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 199 6.0e-16 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 6.0e-16 1
UNIPROTKB|F8VTQ5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 6.0e-16 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 199 6.0e-16 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 6.1e-16 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 6.5e-16 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 6.7e-16 1
UNIPROTKB|L7N0C2 - symbol:L7N0C2 "Uncharacterized protein... 198 7.7e-16 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 9.0e-16 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 9.0e-16 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 199 9.0e-16 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 199 9.0e-16 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 9.0e-16 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 199 9.0e-16 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 199 9.0e-16 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 201 9.3e-16 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 198 9.9e-16 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 1.1e-15 1
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein... 198 1.2e-15 1
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 201 1.2e-15 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 201 1.2e-15 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 201 1.2e-15 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 201 1.2e-15 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 201 1.2e-15 1
UNIPROTKB|F1SA35 - symbol:LOC100737421 "Uncharacterized p... 199 1.4e-15 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 199 1.8e-15 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 199 1.9e-15 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 199 1.9e-15 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 194 2.0e-15 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 199 2.1e-15 1
UNIPROTKB|E2R5N6 - symbol:E2R5N6 "Uncharacterized protein... 196 2.1e-15 1
UNIPROTKB|F1N4K3 - symbol:F1N4K3 "Uncharacterized protein... 195 3.1e-15 1
UNIPROTKB|D4A2D2 - symbol:D4A2D2 "Uncharacterized protein... 192 3.3e-15 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 192 3.3e-15 1
UNIPROTKB|F1M6U1 - symbol:F1M6U1 "Uncharacterized protein... 192 3.3e-15 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 194 3.5e-15 1
UNIPROTKB|F1MW51 - symbol:F1MW51 "Uncharacterized protein... 191 4.2e-15 1
UNIPROTKB|Q13151 - symbol:HNRNPA0 "Heterogeneous nuclear ... 192 4.4e-15 1
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 192 4.9e-15 1
UNIPROTKB|E2RBV8 - symbol:HNRNPA0 "Uncharacterized protei... 192 4.9e-15 1
UNIPROTKB|F1RH94 - symbol:HNRNPA0 "Uncharacterized protei... 192 5.4e-15 1
UNIPROTKB|F1PGQ0 - symbol:F1PGQ0 "Uncharacterized protein... 192 5.7e-15 1
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 194 6.1e-15 1
UNIPROTKB|D4A6Z0 - symbol:D4A6Z0 "Uncharacterized protein... 188 8.8e-15 1
UNIPROTKB|F1M6M1 - symbol:F1M6M1 "Uncharacterized protein... 188 8.8e-15 1
UNIPROTKB|D4AD23 - symbol:D4AD23 "Uncharacterized protein... 190 8.9e-15 1
UNIPROTKB|F1LUE7 - symbol:F1LUE7 "Uncharacterized protein... 187 1.1e-14 1
UNIPROTKB|F1LW17 - symbol:F1LW17 "Uncharacterized protein... 187 1.1e-14 1
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 191 1.2e-14 1
UNIPROTKB|F1N7Z3 - symbol:F1N7Z3 "Uncharacterized protein... 186 1.4e-14 1
RGD|1563684 - symbol:Hnrnpa0 "heterogeneous nuclear ribon... 186 1.4e-14 1
UNIPROTKB|F1LVU1 - symbol:F1LVU1 "Uncharacterized protein... 186 1.4e-14 1
UNIPROTKB|F1M3H8 - symbol:F1M3H8 "Uncharacterized protein... 186 1.4e-14 1
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 185 1.8e-14 1
UNIPROTKB|F1PQB0 - symbol:HNRNPA1L2 "Uncharacterized prot... 187 2.0e-14 1
MGI|MGI:1924384 - symbol:Hnrnpa0 "heterogeneous nuclear r... 186 2.2e-14 1
UNIPROTKB|F1NCI5 - symbol:HNRNPA0 "Uncharacterized protei... 187 2.5e-14 1
UNIPROTKB|F8VYN5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|F1PVY3 - symbol:F1PVY3 "Uncharacterized protein... 183 4.7e-14 1
UNIPROTKB|F1LW71 - symbol:F1LW71 "Uncharacterized protein... 181 4.9e-14 1
UNIPROTKB|G3N220 - symbol:G3N220 "Uncharacterized protein... 183 5.5e-14 1
UNIPROTKB|F1Q2T4 - symbol:F1Q2T4 "Uncharacterized protein... 181 6.4e-14 1
UNIPROTKB|F1SA31 - symbol:F1SA31 "Uncharacterized protein... 183 7.4e-14 1
UNIPROTKB|F1LZZ2 - symbol:F1LZZ2 "Uncharacterized protein... 178 1.6e-13 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 146 1.6e-13 3
UNIPROTKB|F1MH29 - symbol:F1MH29 "Uncharacterized protein... 176 1.6e-13 1
UNIPROTKB|F1LYN9 - symbol:F1LYN9 "Uncharacterized protein... 176 1.6e-13 1
UNIPROTKB|F1N235 - symbol:F1N235 "Uncharacterized protein... 180 2.0e-13 1
UNIPROTKB|E2RJI3 - symbol:LOC608729 "Uncharacterized prot... 178 2.4e-13 1
UNIPROTKB|F1MTY3 - symbol:F1MTY3 "Uncharacterized protein... 176 3.1e-13 1
WARNING: Descriptions of 487 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 237 (88.5 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 46/69 (66%), Positives = 56/69 (81%)
Query: 76 EIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
EI P A ATVKK+FVGGL+D +++ LREYF FG I SVN+V++K+TG KRGFAFIEF
Sbjct: 104 EIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163
Query: 135 NDYDVVDKI 143
+DYD VDKI
Sbjct: 164 DDYDPVDKI 172
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 233 (87.1 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 48/102 (47%), Positives = 68/102 (66%)
Query: 47 TINNKAM-EEAQSEE--EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLKDQ-EEDD 101
T ++ +M +EAQ ++D + P + + +I P A ATVKK+FVG LKD +E
Sbjct: 78 TYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQS 137
Query: 102 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+R+YF FG I +N+V +KETG KRGFAF+EF+DYD VDK+
Sbjct: 138 IRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKV 179
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 47/94 (50%), Positives = 60/94 (63%)
Query: 76 EIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
+ GKPEA A VKK+F+GGLKD EED LR+ FSQFG +E ++T+KETG KRGF F+ F
Sbjct: 90 DAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYF 149
Query: 135 NDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
D D DK F N + V V K + K ++
Sbjct: 150 EDNDSADKAVVLKFHMINGHKVEVKKALTKQEMQ 183
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 48/94 (51%), Positives = 60/94 (63%)
Query: 76 EIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
+ G+PEA A VKK+FVGGLKD EE DL E+FSQFG IE ++T+K+TG KRGF F+ F
Sbjct: 88 DAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHF 147
Query: 135 NDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
D D DK F N + V V K + K I+
Sbjct: 148 EDNDSADKAVVLKFHMINGHKVEVKKALTKQEIQ 181
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 28 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 87
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 88 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 117
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 79 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 138
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 139 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 212 (79.7 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 40/90 (44%), Positives = 63/90 (70%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF+++G I+
Sbjct: 68 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKID 127
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 128 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 211 (79.3 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 68 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 127
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 128 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 211 (79.3 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 79 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 138
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 139 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 211 (79.3 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 80 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 139
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 140 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 211 (79.3 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 80 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 139
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 140 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 211 (79.3 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 80 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 139
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 140 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 211 (79.3 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 80 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 139
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 140 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 211 (79.3 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 80 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 139
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 140 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 215 (80.7 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 45/90 (50%), Positives = 63/90 (70%)
Query: 81 EANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
E N +VKK+FVGGLKD +++ LREYF QFG + SV ++T+K TG +RGFAF+EF+DYD
Sbjct: 117 ETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDA 176
Query: 140 VDK--IRGFAFIEFNDYDVVDKIVCKYNIE 167
VDK ++ I++ DV I YN++
Sbjct: 177 VDKAILKKQHAIKYVHVDVKKSI---YNLD 203
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 45/94 (47%), Positives = 60/94 (63%)
Query: 76 EIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
+ GKPE A VKK+FVGGLKD ED+ L++YFSQFG IE ++T+K+TG KRGF F+ F
Sbjct: 86 DAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYF 145
Query: 135 NDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
+D D DK F + V V K + K ++
Sbjct: 146 DDNDSADKAVVMKFHSICGHKVEVKKALTKQEMQ 179
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 210 (79.0 bits), Expect = 7.9e-17, P = 7.9e-17
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 76 EIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+++ ++T++++G KRGF F+ F
Sbjct: 97 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 156
Query: 135 NDYDVVDKI 143
+D+D VDKI
Sbjct: 157 DDHDPVDKI 165
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 212 (79.7 bits), Expect = 9.3e-17, P = 9.3e-17
Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
KP A++TVKKMFVGG+K D +E+ LREYF QFG I+ VN++T K + +RGFAFI F+D+
Sbjct: 121 KPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDH 180
Query: 138 DVVDKI 143
D VD+I
Sbjct: 181 DAVDRI 186
Score = 107 (42.7 bits), Expect = 0.00059, P = 0.00059
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 46 PTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQEEDD-LRE 104
P I K +E ++E V + M K E P ++K+F+GGL + D+ LR
Sbjct: 3 PAITPK--KEREAESAVSHRVTA---MSK-EQQTPREPEQLRKLFIGGLSFETTDESLRA 56
Query: 105 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+F Q+GT+ ++ + T RGF F+ ++ VD
Sbjct: 57 HFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVD 93
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 45/110 (40%), Positives = 74/110 (67%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE + ++
Sbjct: 82 KVDGHVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVM 141
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI-RGFAFIEFNDYDVVDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + + I ++Y+V K V K ++
Sbjct: 142 EDRQSGKKRGFAFVTFDDHDTVDKIVQKYHTINGHNYEV-KKAVSKQEMQ 190
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 205 (77.2 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 45/106 (42%), Positives = 69/106 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCK 163
T++ +G KRGFAF+ F+D+D VDKI + N ++ V K +CK
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCK 183
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 44/110 (40%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LREYF ++G IE++ ++
Sbjct: 85 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVM 144
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 145 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 194
Score = 113 (44.8 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 74 KLEIG-KPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAF 131
K ++G +P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F
Sbjct: 7 KGKVGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGF 66
Query: 132 IEFNDYDVVD 141
+ ++ + VD
Sbjct: 67 VTYSCVEEVD 76
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 44/110 (40%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LREYF ++G IE++ ++
Sbjct: 73 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVM 132
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 133 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 182
Score = 111 (44.1 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 79 KPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++
Sbjct: 1 EPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 60
Query: 138 DVVD 141
+ VD
Sbjct: 61 EEVD 64
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 207 (77.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 39/90 (43%), Positives = 61/90 (67%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G ++
Sbjct: 80 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVD 139
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F F+D+D VDKI
Sbjct: 140 TIEIITDRQSGKKRGFGFFTFDDHDPVDKI 169
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 203 (76.5 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 40/90 (44%), Positives = 62/90 (68%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P + + E GKP A+ TVKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 68 AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 127
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 128 TIEIITDRQSG-KRGFGFVTFDDHDPVDKI 156
Score = 92 (37.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
K+F+GGL + E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
Score = 70 (29.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 144 RGFAFIEFNDYDVVDKIVC-KYN 165
RGF F+ F+D+D VDKIV KY+
Sbjct: 140 RGFGFVTFDDHDPVDKIVLQKYH 162
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 63 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 122
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
++++G KRGFAF+ F+D+D VDKI
Sbjct: 123 EDRQSGKKRGFAFVTFDDHDTVDKI 147
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 39/109 (35%), Positives = 73/109 (66%)
Query: 61 EVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVT 119
+VD + GP + + + KP + TVKK+FVGG++ D+EE +L++YF ++G I +++++
Sbjct: 87 KVDGRVVGPRAVSREDSVKPGTHLTVKKIFVGGVREDREEYNLKDYFEKYGKIGTIDVME 146
Query: 120 NKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D D VDKI + N ++ + K++ K ++
Sbjct: 147 DRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEMKKVLSKQGMQ 195
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 201 (75.8 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 43/110 (39%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 99 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 158
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 201 (75.8 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 43/110 (39%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 77 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 136
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 137 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 186
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 6 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 65
Query: 139 VVD 141
VD
Sbjct: 66 EVD 68
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 204 (76.9 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 44/110 (40%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LREYF ++G IE++ ++
Sbjct: 97 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVM 156
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 157 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 206
Score = 111 (44.1 bits), Expect = 0.00015, P = 0.00015
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 79 KPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++
Sbjct: 25 EPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 84
Query: 138 DVVD 141
+ VD
Sbjct: 85 EEVD 88
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 205 (77.2 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 42/85 (49%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+KD EE+ LR+YF QFG IE V ++
Sbjct: 97 KVDGRLVEPKRAVSREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIM 156
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
+ +TG KRGFAF+ F+D+D VD+I
Sbjct: 157 VDHKTGNKRGFAFVTFDDHDSVDRI 181
Score = 114 (45.2 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 78 GKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
G+P ++K+F+GGL + DD LR +F Q+GT+ ++ + T RGF F+ ++
Sbjct: 24 GQPREPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSS 83
Query: 137 YDVVD 141
D V+
Sbjct: 84 VDEVN 88
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 104 (41.7 bits), Expect = 0.00072, P = 0.00072
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 72 MDKLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFA 130
M K E P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF
Sbjct: 1 MSKSE--SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 58
Query: 131 FIEFNDYDVVD 141
F+ + + VD
Sbjct: 59 FVTYATVEEVD 69
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 97 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 156
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 157 TDRGSGKKRGFAFVTFDDHDSVDKI 181
Score = 102 (41.0 bits), Expect = 0.00092, P = 0.00092
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + +
Sbjct: 26 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 85
Query: 139 VVD 141
VD
Sbjct: 86 EVD 88
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 38/72 (52%), Positives = 55/72 (76%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D ++ +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++T++ +G KRGFAF
Sbjct: 42 DCVDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 101
Query: 132 IEFNDYDVVDKI 143
+ F+D+D VDKI
Sbjct: 102 VTFDDHDSVDKI 113
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 43/110 (39%), Positives = 71/110 (64%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 72 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 131
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
+ ++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 132 EDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKALSKQEMQ 181
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 199 (75.1 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 104 (41.7 bits), Expect = 0.00093, P = 0.00093
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 72 MDKLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFA 130
M K E P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF
Sbjct: 1 MSKSE--SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 58
Query: 131 FIEFNDYDVVD 141
F+ + + VD
Sbjct: 59 FVTYATVEEVD 69
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 199 (75.1 bits), Expect = 6.5e-16, P = 6.5e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 104 (41.7 bits), Expect = 0.00094, P = 0.00094
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 72 MDKLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFA 130
M K E P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF
Sbjct: 1 MSKSE--SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 58
Query: 131 FIEFNDYDVVD 141
F+ + + VD
Sbjct: 59 FVTYATVEEVD 69
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 199 (75.1 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
Score = 104 (41.7 bits), Expect = 0.00095, P = 0.00095
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 72 MDKLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFA 130
M K E P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF
Sbjct: 1 MSKSE--SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 58
Query: 131 FIEFNDYDVVD 141
F+ + + VD
Sbjct: 59 FVTYATVEEVD 69
>UNIPROTKB|L7N0C2 [details] [associations]
symbol:L7N0C2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03014397
Ensembl:ENSCAFT00000016130 Uniprot:L7N0C2
Length = 278
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 42 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 101
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T + +G KRGFAF+ F+D+D VDKI
Sbjct: 102 TGRGSGKKRGFAFVTFDDHDSVDKI 126
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 199 (75.1 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 199 (75.1 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 199 (75.1 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 199 (75.1 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 199 (75.1 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 199 (75.1 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 199 (75.1 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 201 (75.8 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 43/110 (39%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 77 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 136
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 137 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 186
Score = 110 (43.8 bits), Expect = 0.00018, P = 0.00018
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 6 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 65
Query: 139 VVD 141
VD
Sbjct: 66 EVD 68
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 198 (74.8 bits), Expect = 9.9e-16, P = 9.9e-16
Identities = 43/110 (39%), Positives = 68/110 (61%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +REYF +G IE+++++
Sbjct: 77 KVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIETIDIM 136
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
+ TG KRGF F+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 137 EERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQEMQ 186
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 199 (75.1 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 198 (74.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 39/86 (45%), Positives = 61/86 (70%)
Query: 60 EEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
+++D + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + +
Sbjct: 85 QKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 144
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 145 MTDRGSGKKRGFAFVTFDDHDSVDKI 170
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 201 (75.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 43/110 (39%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 99 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 158
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 201 (75.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 43/110 (39%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 99 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 158
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 201 (75.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 43/110 (39%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 99 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 158
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 201 (75.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 43/110 (39%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 99 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 158
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 201 (75.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 43/110 (39%), Positives = 72/110 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 99 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVM 158
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87
Query: 139 VVD 141
VD
Sbjct: 88 EVD 90
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 199 (75.1 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 39/90 (43%), Positives = 61/90 (67%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A VD ++ P + + E KP A+ VKK+FVGG+K D EE LR+YF ++G I+
Sbjct: 80 AARPHSVDGKVVDPKRAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDYFEKYGKID 139
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+D+D VDKI
Sbjct: 140 TIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 199 (75.1 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 199 (75.1 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 199 (75.1 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 42/110 (38%), Positives = 71/110 (64%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D E +LR+YF ++G IE++ ++
Sbjct: 76 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVM 135
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 136 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 185
Score = 105 (42.0 bits), Expect = 0.00037, P = 0.00037
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T RGF F+ ++ +
Sbjct: 6 PKEPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 65
Query: 139 V 139
V
Sbjct: 66 V 66
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 199 (75.1 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 99 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 158
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 159 TDRGSGKKRGFAFVTFDDHDSVDKI 183
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 196 (74.1 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 40/85 (47%), Positives = 57/85 (67%)
Query: 61 EVDMEIPGPPHMDKLEIG-KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P E +P A+ TVKK+F GG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 195 (73.7 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 35/67 (52%), Positives = 53/67 (79%)
Query: 78 GKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
G+ A+ T+KK+FVGG+K D EE LREYF ++G I+++ ++T++++G KRGF F+ F+D
Sbjct: 91 GQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDD 150
Query: 137 YDVVDKI 143
YD VDKI
Sbjct: 151 YDPVDKI 157
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 45/112 (40%), Positives = 67/112 (59%)
Query: 60 EEVDMEIPGPPHMDKLEIGKPE-------ANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
EEVD + PH + +PE +++ K+FVGG+K D EE LR+Y Q+G
Sbjct: 66 EEVDAAMNARPHKVDGRVVEPERAVSREDSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGK 125
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDVVDKIVCK 163
IE + ++T++ +G KRGFAF+ F+DYD VDKI + ND++ V K + K
Sbjct: 126 IEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDHNCVRKALSK 177
Score = 103 (41.3 bits), Expect = 0.00092, P = 0.00092
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 72 MDKLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFA 130
M K E P+ ++K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF
Sbjct: 1 MSKSE--SPKEPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFG 58
Query: 131 FIEFNDYDVVD 141
F+ + + VD
Sbjct: 59 FVTYATVEEVD 69
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 37/66 (56%), Positives = 50/66 (75%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+A TVKK+FVGG+K D EE LR+YF Q+G E + +VT++ +G KRGFAF+ F+D
Sbjct: 90 RPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDR 149
Query: 138 DVVDKI 143
D VDKI
Sbjct: 150 DSVDKI 155
Score = 102 (41.0 bits), Expect = 0.0010, P = 0.0010
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 86 VKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
V+K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + + VD
Sbjct: 6 VRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVG +K D EE LREYF Q+G IE + ++
Sbjct: 71 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIM 130
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGF F+ F+D+D VDKI
Sbjct: 131 TDRGSGQKRGFVFVTFDDHDSVDKI 155
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 194 (73.4 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 39/85 (45%), Positives = 60/85 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 78 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D++ VDKI
Sbjct: 138 TDRGSGKKRGFAFVTFDDHNSVDKI 162
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 41/93 (44%), Positives = 62/93 (66%)
Query: 53 MEEAQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFG 110
+EE + VD + P + + + +P A+ VKK+FVGG+K D EE LR+YF Q+G
Sbjct: 65 VEEVKGRPHVDERVVEPKWAISREDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYG 124
Query: 111 TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
IE + ++T++ +G KRGFAFI F+D+D +DKI
Sbjct: 125 RIEVIEIMTDQGSG-KRGFAFILFDDHDSIDKI 156
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 76 EIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKR--GFAFI 132
E P+ ++K+F+GGL + D+ LR F Q GT+ + V ++ AKR GF F+
Sbjct: 3 ESESPKEPEQLRKLFIGGLSFETTDESLRSRFEQGGTL--TDCVVRRDPNAKRSRGFGFV 60
Query: 133 EFNDYDVVDKIRG 145
Y V++++G
Sbjct: 61 T---YATVEEVKG 70
Score = 72 (30.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 144 RGFAFIEFNDYDVVDKIVC-KYN 165
RGFAFI F+D+D +DKIV KY+
Sbjct: 140 RGFAFILFDDHDSIDKIVIQKYH 162
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 192 (72.6 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+A VKK+FVGGLK D E DL E+FSQFGT+E ++ +K++G KRGF F+ F ++
Sbjct: 90 RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH 149
Query: 138 DVVDKIRGFAFIEFNDYDV-VDKIVCKYNI 166
D DK F + V V K V K +I
Sbjct: 150 DAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 192 (72.6 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+A VKK+FVGGLK D E DL E+FSQFGT+E ++ +K++G KRGF F+ F ++
Sbjct: 95 RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH 154
Query: 138 DVVDKIRGFAFIEFNDYDV-VDKIVCKYNI 166
D DK F + V V K V K +I
Sbjct: 155 DAADKAAVVKFHPIQGHRVEVKKAVPKEDI 184
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 192 (72.6 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+A VKK+FVGGLK D E DL E+FSQFGT+E ++ +K++G KRGF F+ F ++
Sbjct: 90 RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH 149
Query: 138 DVVDKIRGFAFIEFNDYDV-VDKIVCKYNI 166
D DK F + V V K V K +I
Sbjct: 150 DAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 192 (72.6 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+A VKK+FVGGLK D E DL E+FSQFGT+E ++ +K++G KRGF F+ F ++
Sbjct: 95 RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNH 154
Query: 138 DVVDKIRGFAFIEFNDYDV-VDKIVCKYNI 166
D DK F + V V K V K +I
Sbjct: 155 DAADKAAVVKFHPIQGHRVEVKKAVPKEDI 184
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 192 (72.6 bits), Expect = 5.7e-15, P = 5.7e-15
Identities = 44/96 (45%), Positives = 63/96 (65%)
Query: 60 EEVDMEIPGPPHMD------KLEIGK-----PEANATVKKMFVGGLK-DQEEDDLREYFS 107
EEVD + PH+D K + + P A+ TVKK+FVGG+K D EE LR+YF
Sbjct: 66 EEVDAAMNARPHVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 125
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Q+G IE + ++T++ +G K+GFAF+ F+D+D VDKI
Sbjct: 126 QYGKIEVIEIMTDRGSG-KKGFAFVTFDDHDSVDKI 160
Score = 88 (36.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 80 PEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ + K+F+GGL + E+ LR +F Q+GT ++ + T RG F+ + +
Sbjct: 7 PKEPEQLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVE 66
Query: 139 VVD 141
VD
Sbjct: 67 EVD 69
Score = 71 (30.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 144 RGFAFIEFNDYDVVDKIVC-KYN 165
+GFAF+ F+D+D VDKIV KY+
Sbjct: 144 KGFAFVTFDDHDSVDKIVIQKYH 166
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 194 (73.4 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 42/110 (38%), Positives = 71/110 (64%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVKK+FVGG+K D E +LR+YF ++G IE++ ++
Sbjct: 83 KVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVM 142
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
++++G KRGFAF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 143 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 192
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 39/87 (44%), Positives = 62/87 (71%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ VKK+FVGG+K D EE +LR+YF ++G I+++ +V
Sbjct: 75 KVDGHVVEPKRAISREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYF-EYGNIKTIEVV 133
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKIRG 145
++++G KRGFAF+ F+D+D VDKI G
Sbjct: 134 EDRQSGKKRGFAFLTFDDHDTVDKIVG 160
Score = 82 (33.9 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 87 KKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+K+F+GGL + DD LRE+F ++ T+ ++ + +T RGF F+ ++ + VD
Sbjct: 13 RKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVD 66
Score = 74 (31.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 142 KIRGFAFIEFNDYDVVDKIV 161
K RGFAF+ F+D+D VDKIV
Sbjct: 140 KKRGFAFLTFDDHDTVDKIV 159
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 38/85 (44%), Positives = 58/85 (68%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P M + + +P+A+ TVKK+FVG +K D EE LR+YF Q+G IE + ++
Sbjct: 28 KVDGRVVEPKRAMSREDSQRPDAHLTVKKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIM 87
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
++ + KRGFAF+ F+D+D VDKI
Sbjct: 88 ADRGSEKKRGFAFVTFDDHDSVDKI 112
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 190 (71.9 bits), Expect = 8.9e-15, P = 8.9e-15
Identities = 34/65 (52%), Positives = 49/65 (75%)
Query: 79 KPEANATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
+P A+ TVKK+FVGG+K+ E LR+YF Q+G E + ++T++ G KRGFAF+ F+D+D
Sbjct: 97 RPGAHLTVKKIFVGGIKEDTEHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHD 156
Query: 139 VVDKI 143
VDKI
Sbjct: 157 SVDKI 161
Score = 98 (39.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 72 MDKLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFA 130
M K E P+ ++K+F+G L + D+ LR +F Q+GT+ ++ + T RGF
Sbjct: 1 MSKSE--SPKEPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 58
Query: 131 FIEFNDYDVVD 141
F+ + + VD
Sbjct: 59 FVTYATVEEVD 69
Score = 76 (31.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 142 KIRGFAFIEFNDYDVVDKIVC-KYN 165
K RGFAF+ F+D+D VDKIV KY+
Sbjct: 143 KKRGFAFVTFDDHDSVDKIVIQKYH 167
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 41/96 (42%), Positives = 61/96 (63%)
Query: 60 EEVDMEIPGPPHMDKLEI-GK----------PEANATVKKMFVGGLK-DQEEDDLREYFS 107
EEVD + PH + + GK P A+ VKK++VGG+K D EE +LR YF
Sbjct: 48 EEVDAAVCARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFK 107
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G IE++ ++ +++G KRGFAF+ F+D+D VDKI
Sbjct: 108 KYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKI 143
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 41/96 (42%), Positives = 61/96 (63%)
Query: 60 EEVDMEIPGPPHMDKLEI-GK----------PEANATVKKMFVGGLK-DQEEDDLREYFS 107
EEVD + PH + + GK P A+ VKK++VGG+K D EE +LR YF
Sbjct: 78 EEVDAAVCARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFK 137
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++G IE++ ++ +++G KRGFAF+ F+D+D VDKI
Sbjct: 138 KYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKI 173
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 191 (72.3 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 37/90 (41%), Positives = 57/90 (63%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEAN-ATVKKMFVGGLK-DQEEDDLREYFSQFGTIE 113
A +D + P E + + + VKK+FVGG+K D EE LREYF ++G I+
Sbjct: 80 AARPHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKID 139
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++G KRGF F+ F+DYD VDKI
Sbjct: 140 AIEIITDRQSGKKRGFGFVTFDDYDPVDKI 169
>UNIPROTKB|F1N7Z3 [details] [associations]
symbol:F1N7Z3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00696055 EMBL:DAAA02008074
Ensembl:ENSBTAT00000056782 Uniprot:F1N7Z3
Length = 268
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 37/85 (43%), Positives = 57/85 (67%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ VKK+FVGG+K D EE LR+YF Q+G E + ++
Sbjct: 57 QVDGRVVKPKRAVSREDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYGKTEVIEII 116
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGF F+ F+D+D VDKI
Sbjct: 117 TDQGSGKKRGFVFVTFDDHDSVDKI 141
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 41/90 (45%), Positives = 55/90 (61%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+A VKK+FVGGLK D E DL E+FSQFG +E ++ +K++G KRGF F+ F +
Sbjct: 9 RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSH 68
Query: 138 DVVDKIRGFAFIEFNDYDV-VDKIVCKYNI 166
D DK F + V V K V K +I
Sbjct: 69 DAADKAAVVKFHPIQGHRVEVKKAVPKEDI 98
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 38/85 (44%), Positives = 61/85 (71%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ TVK +FVGG+K D EE +LR+YF ++G IE++ ++
Sbjct: 65 KVDGRVVEPKRAVSREDSVKPGAHLTVK-IFVGGIKEDAEEYNLRDYFEKYGKIETIEVM 123
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
++++G KRGFAF+ F+D+D VDKI
Sbjct: 124 EDRQSGKKRGFAFVTFDDHDTVDKI 148
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 41/90 (45%), Positives = 55/90 (61%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+A VKK+FVGGLK D E DL E+FSQFG +E ++ +K++G KRGF F+ F +
Sbjct: 90 RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSH 149
Query: 138 DVVDKIRGFAFIEFNDYDV-VDKIVCKYNI 166
D DK F + V V K V K +I
Sbjct: 150 DAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVT 119
+VD + P + + + +P A+ TVKK+FVG +D EE LR+YF Q+G IE + ++T
Sbjct: 71 KVDGRVVEPKRAVSREDSRRPGAHLTVKKIFVG--EDTEEHHLRDYFEQYGKIEVIEIMT 128
Query: 120 NKETGAKRGFAFIEFNDYDVVDKI 143
++ +G KRGFAF+ F+D+D VDKI
Sbjct: 129 DRGSGKKRGFAFVTFDDHDSVDKI 152
Score = 95 (38.5 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 88 KMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + + VD
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Score = 76 (31.8 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 142 KIRGFAFIEFNDYDVVDKIVC-KYN 165
K RGFAF+ F+D+D VDKIV KY+
Sbjct: 134 KKRGFAFVTFDDHDSVDKIVIQKYH 158
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 187 (70.9 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P TVKK+FVGG+K D EE LR+YF Q+G IE + +T++ +G KRGFAF+ F+D+
Sbjct: 92 RPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDH 151
Query: 138 DVVDKI 143
D VDKI
Sbjct: 152 DSVDKI 157
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 186 (70.5 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 41/90 (45%), Positives = 55/90 (61%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+A VKK+FVGGLK D E DL E+FSQFG +E ++ +K++G KRGF F+ F +
Sbjct: 90 RPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSH 149
Query: 138 DVVDKIRGFAFIEFNDYDV-VDKIVCKYNI 166
D DK F + V V K V K +I
Sbjct: 150 DAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 187 (70.9 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 41/91 (45%), Positives = 57/91 (62%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
KP A+A VKK+FVGGLK D E DL ++FSQFG +E ++ +K++G KRGF F+ F ++
Sbjct: 111 KPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNH 170
Query: 138 DVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
D DK F + V V K V K +I+
Sbjct: 171 DAADKAAVVKFHPIQGHRVEVKKAVPKEDIQ 201
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 36/80 (45%), Positives = 56/80 (70%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK+FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 33 KVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 92
Query: 119 TNKETGAKRGFAFIEFNDYD 138
T++ +G KRGFAF+ F+D+D
Sbjct: 93 TDRGSGKKRGFAFVTFDDHD 112
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 183 (69.5 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 33/63 (52%), Positives = 50/63 (79%)
Query: 81 EANATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 140
+A+ TVKK+FVGG+K+ ED LR+YF ++G IE + ++T++ +G KRGF F+ F+D+D V
Sbjct: 98 DAHLTVKKIFVGGIKENTEDHLRDYF-EYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSV 156
Query: 141 DKI 143
DKI
Sbjct: 157 DKI 159
Score = 89 (36.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + D+ LR +F ++GT+ ++ + T RGF F+ + +
Sbjct: 7 PKEPEQLQKLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVE 65
Query: 139 VVD 141
VD
Sbjct: 66 EVD 68
Score = 78 (32.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 142 KIRGFAFIEFNDYDVVDKIVCKYN 165
K RGF F+ F+D+D VDKI+ KY+
Sbjct: 141 KKRGFTFVTFDDHDSVDKIIQKYH 164
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 36/65 (55%), Positives = 49/65 (75%)
Query: 80 PEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P A+ TVKK+FVGG+K D EE LR+Y Q+G IE V ++T++ +G K GFAF+ F+D+D
Sbjct: 101 PGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHD 160
Query: 139 VVDKI 143
VDKI
Sbjct: 161 SVDKI 165
Score = 104 (41.7 bits), Expect = 0.00068, P = 0.00068
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 69 PPHMDKLE-IGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAK 126
P M K E + +PE ++K+F GGL + D+ LR +F Q+GT+ ++ + T
Sbjct: 5 PAVMSKSESLKEPEQ---LRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 61
Query: 127 RGFAFIEFNDYDVVDK 142
RGF F+ + + VD+
Sbjct: 62 RGFGFVTYAPVEEVDR 77
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 183 (69.5 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 45/119 (37%), Positives = 71/119 (59%)
Query: 60 EEVDMEIPGPPHMDKLE----IG-----KPEANATVKKMFVGGLK-DQEEDDLREYFSQF 109
EEVD + PH +E + KP A+ TVKK+FVGG+K D EE +LR+ F +
Sbjct: 21 EEVDAAMYARPHKRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDCFENY 80
Query: 110 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
G IE++ ++ ++++G KRG AF+ F+D+D VDKI + N ++ V K + K ++
Sbjct: 81 GKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 139
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 181 (68.8 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 40/95 (42%), Positives = 64/95 (67%)
Query: 51 KAMEEAQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
K ++ A+S + VD + P + + + +P A+ TV+K+FVGG+K D EE LR+YF Q
Sbjct: 66 KEVDAARSHK-VDGRVVEPKRAVSREDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQ 124
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+G IE + ++T++ +G KRGFA + F+D+D DKI
Sbjct: 125 YGKIEVIEIMTDRGSGKKRGFASVTFDDHDK-DKI 158
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 183 (69.5 bits), Expect = 7.4e-14, P = 7.4e-14
Identities = 34/90 (37%), Positives = 60/90 (66%)
Query: 56 AQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIE 113
A + +D ++ P H + + + GKP TVKK+F+GGL +D EE LR+YF ++ I+
Sbjct: 72 AATPRSIDGKMVAPKHAVPREDYGKPGPLVTVKKLFIGGLTEDTEEHHLRDYFEKYEKID 131
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ ++T++++ RGF F+ F+D+D VDK+
Sbjct: 132 AIEIITDRQSSKIRGFGFVTFDDHDHVDKL 161
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 178 (67.7 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/65 (47%), Positives = 52/65 (80%)
Query: 80 PEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P A+ V+K+FVGG+K D EE +LR+YF ++G IE++ ++ ++++G KRGFAF+ F+++D
Sbjct: 121 PGAHLMVEKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHD 180
Query: 139 VVDKI 143
VDK+
Sbjct: 181 TVDKV 185
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 146 (56.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 74 KLEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
K I + E + T K+FVGG+ D + E+FSQ+GTI ++ +K+TG RGF F+
Sbjct: 231 KRAIPRDEQDKT-GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV 289
Query: 133 EFNDYDVVDKIRGFAFIEFND 153
++ D VD++ FI+F D
Sbjct: 290 TYDSADAVDRVCQNKFIDFKD 310
Score = 139 (54.0 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 74 KLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
K E K + + KMF+GGL D ED+LREYF ++GT+ + ++ + TG RGF F+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 133 EFNDYDVVDKI 143
F VD++
Sbjct: 206 SFEKPSSVDEV 216
Score = 51 (23.0 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 144 RGFAFIEFNDYDVVDKIVCKYNIEF 168
RGF F+ ++ D VD++ I+F
Sbjct: 284 RGFGFVTYDSADAVDRVCQNKFIDF 308
Score = 35 (17.4 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 54 EEAQSEEEVDMEIPGPPHMDKL 75
EE + EEE + G +D+L
Sbjct: 21 EEVKKEEEQNKAGSGTSQLDQL 42
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 34/65 (52%), Positives = 48/65 (73%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+ TVKK+F GG+K D EE LR+YF + G IE + ++T+ +G KRGFAF+ F+D+
Sbjct: 92 RPGAHLTVKKIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDH 151
Query: 138 DVVDK 142
D VDK
Sbjct: 152 DSVDK 156
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/66 (54%), Positives = 47/66 (71%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+ TVKK+FVGG K D EE LR YF Q+G IE + ++T+ +G KRGFAF+ F+D
Sbjct: 83 RPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQ 142
Query: 138 DVVDKI 143
D VD I
Sbjct: 143 DSVDNI 148
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 180 (68.4 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 35/67 (52%), Positives = 50/67 (74%)
Query: 78 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
GK A TVKK+FVGG+ +D +E LR+YF ++G I ++ +VT+ ++G KRGF FI F+D
Sbjct: 103 GKLGALITVKKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDD 162
Query: 137 YDVVDKI 143
+D VDKI
Sbjct: 163 HDPVDKI 169
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 178 (67.7 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYF-SQFGTIESVNMVTNKETGAKRGFAFIEFND 136
+P A+ TVKK+FVGG+K D EE L++YF Q+ IE + ++T++ +G KRGFAF+ F+D
Sbjct: 97 RPGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDD 156
Query: 137 YDVVDKI 143
+D VDKI
Sbjct: 157 HDFVDKI 163
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 176 (67.0 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 34/65 (52%), Positives = 47/65 (72%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+ TVKK+F GG+K D EE LR+YF G IE + ++T+ +G KRGFAF+ F+D+
Sbjct: 93 RPGAHLTVKKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDH 152
Query: 138 DVVDK 142
D VDK
Sbjct: 153 DSVDK 157
>UNIPROTKB|F1P645 [details] [associations]
symbol:LOC607505 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03007023 Ensembl:ENSCAFT00000000618 OMA:EMARASP
Uniprot:F1P645
Length = 317
Score = 176 (67.0 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 35/66 (53%), Positives = 49/66 (74%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+ TVKK+FVGG+K D EE LR+ F Q G E + ++T++ +G KRGFAF+ F+D+
Sbjct: 94 RPGAHLTVKKIFVGGIKGDAEEHHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDH 153
Query: 138 DVVDKI 143
D VDKI
Sbjct: 154 DSVDKI 159
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 174 (66.3 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + +P A+ TVKK FVGG+K D EE LR+YF Q+G IE + ++
Sbjct: 80 KVDGRVVEPKRAVSREDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 139
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
+ +G KR FAF+ F+D+D VDKI
Sbjct: 140 IDPGSG-KRSFAFVTFDDHDSVDKI 163
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 174 (66.3 bits), Expect = 7.6e-13, P = 7.6e-13
Identities = 33/66 (50%), Positives = 49/66 (74%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+ TVKK+FVGG+K D E+ LR+YF +G IE + ++T++ +G KR FAF+ F+ +
Sbjct: 63 RPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAH 122
Query: 138 DVVDKI 143
D VDKI
Sbjct: 123 DSVDKI 128
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 68 GPPHM--DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETG 124
G P M + + +P A+ T KK FVGG+K D EE LR YF Q+G I + ++T++ +
Sbjct: 83 GKPKMAVSREDSQRPGAHLTGKKTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSD 142
Query: 125 AKRGFAFIEFNDYDVVDKI 143
KRGFAF+ +D+D +DKI
Sbjct: 143 KKRGFAFVTCDDHDSIDKI 161
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 171 (65.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 33/69 (47%), Positives = 49/69 (71%)
Query: 76 EIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
E GKP A T KK+FVGG+K D E LR+YF ++GTI+++ ++ +++G K F F+ F
Sbjct: 101 ESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTF 158
Query: 135 NDYDVVDKI 143
+D+D VDKI
Sbjct: 159 DDHDPVDKI 167
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 171 (65.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 33/69 (47%), Positives = 49/69 (71%)
Query: 76 EIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
E GKP A T KK+FVGG+K D E LR+YF ++GTI+++ ++ +++G K F F+ F
Sbjct: 101 ESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTF 158
Query: 135 NDYDVVDKI 143
+D+D VDKI
Sbjct: 159 DDHDPVDKI 167
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVN-MVTNKETGAKRGFAFIEFND 136
KP KK+F+GG+K D EE +LR+YF ++G IE++ M ++++G KRGFAF+ F+D
Sbjct: 94 KPVVCLLAKKIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDD 153
Query: 137 YDVVDKI 143
+ VDKI
Sbjct: 154 HYTVDKI 160
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 61 EVDMEIPGPPHMDKLEIG-KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P +E +P A +K +FVG +K D EE LR+YF Q+G E + +V
Sbjct: 74 KVDGRVVEPKRAVSIEDSQRPGAYLNMK-IFVGAIKEDTEEHHLRDYFGQYGKTEVIEIV 132
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
T++ +G KRGFAF+ F+D D VDKI
Sbjct: 133 TDRGSGKKRGFAFVTFDDRDSVDKI 157
Score = 102 (41.0 bits), Expect = 0.00068, P = 0.00068
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 86 VKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
V+K+F+GGL + D+ LR +F Q+GT+ ++ + T RGF F+ + + VD
Sbjct: 9 VRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 65
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 163 (62.4 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 39/102 (38%), Positives = 63/102 (61%)
Query: 44 TRPTINNKAMEEAQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLKD-QEEDD 101
T+P + A A+ + VD + P + + + +P A+ TVKK+FVGG+++ EE
Sbjct: 72 TKPWWRSLAAMNARPHK-VDERVVEPKRDVSRGDSQRPHAHLTVKKIFVGGIQEGTEEHH 130
Query: 102 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
LR F Q+G I+ + ++T++ + KRGFAF F+D+D VDKI
Sbjct: 131 LRNNFEQYGKID-IEIMTDRGSDKKRGFAFETFDDHDSVDKI 171
Score = 76 (31.8 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 141 DKIRGFAFIEFNDYDVVDKIVC-KYN 165
DK RGFAF F+D+D VDKIV KY+
Sbjct: 152 DKKRGFAFETFDDHDSVDKIVIQKYH 177
Score = 66 (28.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 61 EVDMEIPGPPHMDKLEIGK-PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMV 118
EV P P M K E K PE ++K+F+ GL + D+ L +F + G + ++
Sbjct: 2 EVSTPQPCPAVMSKSESSKSPEE---LRKLFIRGLSFETIDESLSSHF-EMGKAHRLVVM 57
Query: 119 TNKETGAKRGFAFI 132
T RGF F+
Sbjct: 58 RVPNTKHSRGFGFV 71
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 166 (63.5 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 79 KPEANATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
+P A TVKK+FVGG+K+ E+ +YF Q+G E + ++T++ +G KRGFAF+ F+++D
Sbjct: 97 RPAAYLTVKKIFVGGIKEDTEEH-EDYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHD 155
Query: 139 VVDKI 143
VD+I
Sbjct: 156 SVDQI 160
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 163 (62.4 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 39/102 (38%), Positives = 63/102 (61%)
Query: 44 TRPTINNKAMEEAQSEEEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLKD-QEEDD 101
T+P + A A+ + VD + P + + + +P A+ TVKK+FVGG+++ EE
Sbjct: 56 TKPWWRSLAAMNARPHK-VDERVVEPKRDVSRGDSQRPHAHLTVKKIFVGGIQEGTEEHH 114
Query: 102 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
LR F Q+G I+ + ++T++ + KRGFAF F+D+D VDKI
Sbjct: 115 LRNNFEQYGKID-IEIMTDRGSDKKRGFAFETFDDHDSVDKI 155
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 32/68 (47%), Positives = 51/68 (75%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
KP A+ TVKK+FVGG+K D EE +LR+YF ++G I+++ ++ ++ +G +R F+ F+D+
Sbjct: 96 KPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLSGKER-LLFVTFDDH 154
Query: 138 DVVDKIRG 145
D VDKI G
Sbjct: 155 DTVDKIVG 162
Score = 102 (41.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F ++GT+ ++ + +T R F+F+ ++
Sbjct: 6 PKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVK 65
Query: 139 VVD 141
VD
Sbjct: 66 EVD 68
Score = 53 (23.7 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 141 DKIRG---FAFIEFNDYDVVDKIV 161
D++ G F+ F+D+D VDKIV
Sbjct: 138 DRLSGKERLLFVTFDDHDTVDKIV 161
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 159 (61.0 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/65 (49%), Positives = 48/65 (73%)
Query: 80 PEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P A+ TVK++ VGG+K D EE LR+YF +G IE + ++T++ +G K+ FAF+ F+D+D
Sbjct: 89 PGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSG-KKEFAFVTFDDHD 147
Query: 139 VVDKI 143
VDKI
Sbjct: 148 SVDKI 152
Score = 84 (34.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 86 VKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
++K+F+GGL + ++ LR +F Q+ T+ + + T RGF F+ + + VD
Sbjct: 4 LRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVD 60
Score = 63 (27.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 146 FAFIEFNDYDVVDKIVC-KYN 165
FAF+ F+D+D VDKIV KY+
Sbjct: 138 FAFVTFDDHDSVDKIVIQKYH 158
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 161 (61.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 72 MDKLEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFA 130
M+K + +P A T+KK+ VGG+ +D EE LR+YF +G E + ++T++ + KRGFA
Sbjct: 89 MEKSQ--RPGAPLTMKKVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFA 146
Query: 131 FIEFNDYDVVDKI 143
F+ F+D+D VDKI
Sbjct: 147 FVTFDDHDSVDKI 159
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 155 (59.6 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 35/91 (38%), Positives = 57/91 (62%)
Query: 60 EEVDMEIPGPPH------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTI 112
EE+D + PH + + + +P A+ TVK +F+ G+K D EE LR+YF Q+ I
Sbjct: 71 EEMDAAMNARPHKVDGRVVSREDSQRPGAHLTVK-IFISGIKEDTEEHHLRDYFEQYRKI 129
Query: 113 ESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
E + ++T++ + KR FAF+ F+++D VDKI
Sbjct: 130 EVIEIMTDRGSRKKRDFAFVTFDEHDSVDKI 160
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 126 (49.4 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 71 HMDKLEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGF 129
++D + G N+ K+FVGG+ E +LREYF +FG + V M+ + E RGF
Sbjct: 124 NIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 183
Query: 130 AFIEFNDYDVVDK 142
FI F D VD+
Sbjct: 184 GFITFEDEQSVDQ 196
Score = 124 (48.7 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 68 GPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAK 126
G P + K A A ++K+FVGGL ++ LR YFSQ+G + ++ +K T
Sbjct: 37 GAPSHSSVSARKA-AQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQS 95
Query: 127 RGFAFIEFNDYDVVDKI 143
RGF F++F D + V +
Sbjct: 96 RGFGFVKFKDPNCVGTV 112
Score = 49 (22.3 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 137 YDVV-DKIRGFAFIEFNDYDVVDKIV 161
YD + RGF FI F D VD+ V
Sbjct: 173 YDAEKQRPRGFGFITFEDEQSVDQAV 198
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 155 (59.6 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 35/91 (38%), Positives = 55/91 (60%)
Query: 60 EEVDMEIPGPPH------MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTI 112
EE+D + PH + + + +P A+ TVK V G+K D EE LR+YF Q+ I
Sbjct: 67 EEMDAAMNARPHKVDGRVVSREDSQRPGAHLTVKIFIVSGIKEDTEEHHLRDYFEQYRKI 126
Query: 113 ESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
E + ++T++ + KR FAF+ F+++D VDKI
Sbjct: 127 EVIEIMTDRGSRKKRDFAFVTFDEHDSVDKI 157
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 157 (60.3 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ VKK+FVGG+K D EE +LR+YF ++G E++
Sbjct: 100 KVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKTETIE-- 157
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
+ KRGFAF+ F+D D VDKI
Sbjct: 158 GRQAEWEKRGFAFVTFDDQDTVDKI 182
Score = 102 (41.0 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 74 KLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
++E P+ ++K+F+GGL + DD LRE+F + GT+ ++ + +T RGF F+
Sbjct: 23 RMEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFV 82
Query: 133 EFNDYDVVD 141
+ + VD
Sbjct: 83 TSSCVEEVD 91
Score = 70 (29.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGFAF+ F+D D VDKIV
Sbjct: 166 RGFAFVTFDDQDTVDKIV 183
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 157 (60.3 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 61 EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMV 118
+VD + P + + + KP A+ VKK+FVGG+K D EE +LR+YF ++G E++
Sbjct: 100 KVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKTETIE-- 157
Query: 119 TNKETGAKRGFAFIEFNDYDVVDKI 143
+ KRGFAF+ F+D D VDKI
Sbjct: 158 GRQAEWEKRGFAFVTFDDQDTVDKI 182
Score = 102 (41.0 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 74 KLEIGKPEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
++E P+ ++K+F+GGL + DD LRE+F + GT+ ++ + +T RGF F+
Sbjct: 23 RMEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFV 82
Query: 133 EFNDYDVVD 141
+ + VD
Sbjct: 83 TSSCVEEVD 91
Score = 70 (29.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGFAF+ F+D D VDKIV
Sbjct: 166 RGFAFVTFDDQDTVDKIV 183
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 135 (52.6 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 34/99 (34%), Positives = 49/99 (49%)
Query: 46 PTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLRE 104
P N+ AME+ ++ G K+ K + + KMF+GGL D + DL E
Sbjct: 113 PADNSAAMEDMNEYSNIEEFAEG----SKINASKNQQDDG--KMFIGGLSWDTSKKDLTE 166
Query: 105 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Y S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 167 YLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Score = 135 (52.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 210 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 264
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 265 PMDTKTNERRGFCFITYTDEEPVKKL 290
Score = 44 (20.5 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF FI + D + V K++
Sbjct: 274 RGFCFITYTDEEPVKKLL 291
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D+++YF QFG ++
Sbjct: 11 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 69
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 70 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 108
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 157 (60.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 34 VEAGVLEVVT-TRP-TINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFV 91
V+ +E+V RP TI+NK +E + D + G G K++F+
Sbjct: 81 VDPKSVEIVQRARPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFL 140
Query: 92 GGLKDQEEDDL-REYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
GGLK+ ++++ REYFSQFG + SV ++ ++ETG +R F F+EF D +K
Sbjct: 141 GGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEK 192
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 28/66 (42%), Positives = 46/66 (69%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P TVKK+F GG+K D EE ++R+YF +G I+ + ++T++ +G K+ FA + +D+
Sbjct: 106 RPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHYGKIDMIEIMTDRSSG-KKEFALVPLDDH 164
Query: 138 DVVDKI 143
D VDKI
Sbjct: 165 DSVDKI 170
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 136 (52.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 31/88 (35%), Positives = 47/88 (53%)
Query: 57 QSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 115
Q+EE+ D P K+ K + + KMF+GGL D + DL +Y S+FG +
Sbjct: 2 QAEEQGDFSTDEFPEGSKINASKNQEDDG--KMFIGGLSWDTSKKDLTDYLSRFGEVLDC 59
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ T+ TG RGF F+ F D + VD++
Sbjct: 60 TIKTDPLTGRSRGFGFVLFKDAESVDRV 87
Score = 132 (51.5 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KK+FVGGL D E+ LREYF +G IES+ + T+ +T +RGF F+ F + V K+
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKL 172
Score = 35 (17.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF F+ F + V K++
Sbjct: 156 RGFCFVTFALEEPVQKLL 173
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 56 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 108
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 109 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 143
Score = 126 (49.4 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 58
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 4 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 56
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 57 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 91
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 135 (52.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 91 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 145
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 146 PMDTKTNERRGFCFITYTDEEPVKKL 171
Score = 127 (49.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 86
Score = 44 (20.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF FI + D + V K++
Sbjct: 155 RGFCFITYTDEEPVKKLL 172
>UNIPROTKB|F1PD20 [details] [associations]
symbol:F1PD20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03013453
Ensembl:ENSCAFT00000007675 Uniprot:F1PD20
Length = 309
Score = 152 (58.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 60 EEVDMEIPGPPHMDKL----EIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
EE + PGPP + + + ++ +FVGG+K D EE R+ Q+G +E
Sbjct: 64 EEAAAQEPGPPEVGRAWTQRAVSPGDSRRPGAHIFVGGIKGDPEEHHPRDCLEQYGNVEV 123
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ VT++ G +RGFAF+ F+D+D VDKI
Sbjct: 124 METVTDRGRGEERGFAFVTFDDHDSVDKI 152
>UNIPROTKB|L7N066 [details] [associations]
symbol:L7N066 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03013421
Ensembl:ENSCAFT00000006911 Uniprot:L7N066
Length = 309
Score = 152 (58.6 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 33/89 (37%), Positives = 51/89 (57%)
Query: 60 EEVDMEIPGPPHMDKL----EIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
EE + PGPP + + + ++ +FVGG+K D EE R+ Q+G +E
Sbjct: 64 EEAAAQEPGPPEVGRAWTQRAVSPGDSRRPGAHIFVGGIKGDPEEHHPRDCLEQYGNVEV 123
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ VT++ G +RGFAF+ F+D+D VDKI
Sbjct: 124 METVTDRGRGEERGFAFVTFDDHDSVDKI 152
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 149 (57.5 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 54 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGA 106
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 107 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 141
Score = 121 (47.7 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 89 MFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
MF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 56
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 149 (57.5 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 55 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGA 107
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 108 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 142
Score = 126 (49.4 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 57
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 135 (52.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 113 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 167
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 168 PMDTKTNERRGFCFITYTDEEPVKKL 193
Score = 127 (49.8 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 108
Score = 44 (20.5 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF FI + D + V K++
Sbjct: 177 RGFCFITYTDEEPVKKLL 194
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 135 (52.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 113 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 167
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 168 PMDTKTNERRGFCFITYTDEEPVKKL 193
Score = 127 (49.8 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 108
Score = 44 (20.5 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF FI + D + V K++
Sbjct: 177 RGFCFITYTDEEPVKKLL 194
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 57 QSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 115
Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF FG +ES+
Sbjct: 3 QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 57
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + +T +RGF FI F + + V KI
Sbjct: 58 ELPMDNKTNKRRGFCFITFKEEEPVKKI 85
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 57 QSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 115
Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF FG +ES+
Sbjct: 4 QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 58
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + +T +RGF FI F + + V KI
Sbjct: 59 ELPMDNKTNKRRGFCFITFKEEEPVKKI 86
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 148 (57.2 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 85 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 137
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 138 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 172
Score = 126 (49.4 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 87
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 135 (52.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 210 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 264
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 265 PMDTKTNERRGFCFITYTDEEPVKKL 290
Score = 130 (50.8 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 46 PTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLRE 104
P ++ AME+ ++ G K+ K + + KMF+GGL D + DL E
Sbjct: 113 PADHSAAMEDMNEYSNIEEFAEG----SKINASKNQQDDG--KMFIGGLSWDTSKKDLTE 166
Query: 105 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
Y S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 167 YLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Score = 44 (20.5 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF FI + D + V K++
Sbjct: 274 RGFCFITYTDEEPVKKLL 291
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 151 (58.2 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+K+FVGGL + E +LR++F ++G IES+N+ T+ +TG RGFAFI F + + +DK+
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 60 EEVDMEIPGPPHM-DKLEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNM 117
E +D H+ + ++ +A A K+FVGGL + +++++ YF QFG I V M
Sbjct: 108 EAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEM 167
Query: 118 VTNKETGAKRGFAFIEFNDYDVV 140
+K+ ++GF FI F+ VV
Sbjct: 168 PFDKQKSQRKGFCFITFDSEQVV 190
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 150 (57.9 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D+++YF QFG ++
Sbjct: 46 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 104
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 105 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 143
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 150 (57.9 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D+++YF QFG ++
Sbjct: 59 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 117
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 118 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 156
Score = 119 (46.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 88 KMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF F+ F D VDK+
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 57
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D+++YF QFG ++
Sbjct: 79 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 176
Score = 121 (47.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 77 IGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
+ P++ KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 136 DYDVVDKI 143
D VDK+
Sbjct: 70 DQAGVDKV 77
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 135 (52.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 92 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 146
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 147 PMDTKTNERRGFCFITYTDEEPVKKL 172
Score = 123 (48.4 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D V+K+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKV 87
Score = 44 (20.5 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF FI + D + V K++
Sbjct: 156 RGFCFITYTDEEPVKKLL 173
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 150 (57.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 80 PEANATVKKMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ KK+FVGGL +D++ YF QFG IE ++ +K+T RGF F+ F D
Sbjct: 111 PKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSED 170
Query: 139 VVDKIRGFAFIEFND 153
VVDK+ F E N+
Sbjct: 171 VVDKVCEIHFHEINN 185
Score = 123 (48.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 62 VDMEIPGPPHMDKLEIG--KP-EANATVKKMFVGGLKDQEE-DDLREYFSQFGTIESVNM 117
+D++I ++E+G P E KMF+GGL Q + LR+YF ++G I +
Sbjct: 1 MDIKIEQQQQQQQVELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMV 60
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + T RGF F+ F+D + VDK+
Sbjct: 61 MKDPTTRRSRGFGFVTFSDPNSVDKV 86
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 148 (57.2 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 100 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 152
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 153 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 187
Score = 128 (50.1 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 74 KLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
K++ K E + KMF+GGL D + DL++YFS+FG + + + TG RGF F+
Sbjct: 34 KIDASKNEEDEG--KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 91
Query: 133 EFNDYDVVDKI 143
F + + VDK+
Sbjct: 92 LFKESESVDKV 102
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 148 (57.2 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 150 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 202
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 237
Score = 128 (50.1 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 66 IDASKNEEDEGHSNSSPRHTEAATAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGD 120
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 121 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 148 (57.2 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 152 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 204
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 128 (50.1 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 128 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 182
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 183 PMDTKTNERRGFCFITYTDEEPVKKL 208
Score = 124 (48.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 43 TTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDD 101
T R + + A+ E+ +M + +I + KMF+GGL D + D
Sbjct: 22 TPRGSPSLTALSRPAMEDATEMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKD 81
Query: 102 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
L EY S+FG + + T+ TG RGF F+ F D V+K+
Sbjct: 82 LTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKV 123
Score = 44 (20.5 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF FI + D + V K++
Sbjct: 192 RGFCFITYTDEEPVKKLL 209
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 148 (57.2 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D++ YF QFG ++
Sbjct: 46 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 104
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 105 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 143
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 135 (52.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 210 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 264
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 265 PMDTKTNERRGFCFITYTDEEPVKKL 290
Score = 127 (49.8 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL D + DL EY S+FG + + T+ TG RGF F+ F D VDK+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Score = 44 (20.5 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGF FI + D + V K++
Sbjct: 274 RGFCFITYTDEEPVKKLL 291
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 148 (57.2 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 34/90 (37%), Positives = 56/90 (62%)
Query: 61 EVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQEEDD-------LREYFSQFGTIE 113
+VD + + + + +P A+ T+KK +++EEDD LR+YF Q+G IE
Sbjct: 92 KVDRVVEPKRAVSREDSQRPGAHLTMKKKEE---EEEEEDDNNTEEYHLRDYFEQYGKIE 148
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ ++T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 149 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 178
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 148 (57.2 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 131 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 183
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 184 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 218
Score = 128 (50.1 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 74 KLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
K++ K E + KMF+GGL D + DL++YFS+FG + + + TG RGF F+
Sbjct: 65 KIDASKNEEDEG--KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFV 122
Query: 133 EFNDYDVVDKI 143
F + + VDK+
Sbjct: 123 LFKESESVDKV 133
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + +T +RGF FI F + D V K+
Sbjct: 83 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKV 141
Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMFVGGL D + DL++YF++FG + + + TG RGF FI F + V+K+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKV 57
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 148 (57.2 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQ+ E+D + P +P+ KK+FVGGL + +D+++YF QFG ++
Sbjct: 79 AQTRHELDSKTIDPKVAFPRR-AQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F + DVV+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINN 176
Score = 108 (43.1 bits), Expect = 0.00034, P = 0.00034
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 88 KMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL Q ++ L++YF +FG ++ ++ + T RGF F+ F D VDK+
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKV 77
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 148 (57.2 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 150 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 202
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 237
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 66 IDASKNEEDEGHSNSSPRHTEAATAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGD 120
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 121 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 148 (57.2 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 150 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 202
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 203 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 237
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 66 IDASKNEEDEGHSNSSPRHTEAATAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGD 120
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 121 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 148 (57.2 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 152 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 204
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 148 (57.2 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 152 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 204
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 148 (57.2 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 152 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 204
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 148 (57.2 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 152 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 204
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG +ES+ + + +T +RGF FI F + + V KI
Sbjct: 205 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 68 IDASKNEEDEGHSNSSPRHTEAAAAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 147 (56.8 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ KK+FVGGL + +D+++YF QFG +E ++ +K T RGF F+ F +
Sbjct: 80 QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE 139
Query: 138 DVVDKIRGFAFIEFND 153
DVV+K+ F E N+
Sbjct: 140 DVVEKVCEIHFHEINN 155
Score = 122 (48.0 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 89 MFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFA 147
MF+GGL Q D LR+YFS+FG I ++ + T RGF F+ F D VDK+ G
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 148 FIEFNDYDVVDKI 160
E + + K+
Sbjct: 61 HHELDSKTIDPKV 73
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 148 (57.2 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D +++G A+ VKK FVGG+K D EE +L++YF ++G IE+ M N+++G +RGFAF
Sbjct: 112 DSVKLG---AHLMVKKTFVGGIKEDTEEYNLKDYFEKYGKIETEGM-ENRQSG-RRGFAF 166
Query: 132 IEFNDYDVVDKI 143
F D+DV DKI
Sbjct: 167 AIFGDHDV-DKI 177
Score = 107 (42.7 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 80 PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ ++K+F+GGL + DD LRE+F + GT+ ++ + +T RGF F+ ++ +
Sbjct: 25 PKEPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVE 84
Query: 139 VVD 141
VD
Sbjct: 85 EVD 87
Score = 57 (25.1 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 144 RGFAFIEFNDYDVVDKIV 161
RGFAF F D+DV DKIV
Sbjct: 162 RGFAFAIFGDHDV-DKIV 178
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 148 (57.2 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D++ YF QFG ++
Sbjct: 79 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 176
Score = 121 (47.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 77 IGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
+ P++ KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 136 DYDVVDKI 143
D VDK+
Sbjct: 70 DQAGVDKV 77
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 148 (57.2 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D++ YF QFG ++
Sbjct: 79 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 176
Score = 121 (47.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 77 IGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
+ P++ KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 136 DYDVVDKI 143
D VDK+
Sbjct: 70 DQAGVDKV 77
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 148 (57.2 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D++ YF QFG ++
Sbjct: 79 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 176
Score = 121 (47.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 77 IGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
+ P++ KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 136 DYDVVDKI 143
D VDK+
Sbjct: 70 DQAGVDKV 77
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 149 (57.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQ E+D + P +P+ KK+FVGGL + +D+++YF QFG +E
Sbjct: 80 AQPHHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVED 138
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F + DVV+K+ F E N+
Sbjct: 139 AMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINN 177
Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 88 KMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL Q D LR+YFS+FG I ++ + T RGF F+ F D VDK+
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKV 78
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 147 (56.8 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ KK+FVGGL + +D+++YF QFG +E ++ +K T RGF F+ F +
Sbjct: 102 QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE 161
Query: 138 DVVDKIRGFAFIEFND 153
DVV+K+ F E N+
Sbjct: 162 DVVEKVCEIHFHEINN 177
Score = 127 (49.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 88 KMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL Q D LR+YFS+FG I ++ + T RGF F+ F D VDK+ G
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 147 AFIEFNDYDVVDKI 160
E + + K+
Sbjct: 82 PHHELDSKTIDPKV 95
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 147 (56.8 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ KK+FVGGL + +D+++YF QFG +E ++ +K T RGF F+ F +
Sbjct: 102 QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE 161
Query: 138 DVVDKIRGFAFIEFND 153
DVV+K+ F E N+
Sbjct: 162 DVVEKVCEIHFHEINN 177
Score = 127 (49.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 88 KMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL Q D LR+YFS+FG I ++ + T RGF F+ F D VDK+ G
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 147 AFIEFNDYDVVDKI 160
E + + K+
Sbjct: 82 PHHELDSKTIDPKV 95
>UNIPROTKB|F1PSN2 [details] [associations]
symbol:F1PSN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03003214
Ensembl:ENSCAFT00000027618 Uniprot:F1PSN2
Length = 268
Score = 144 (55.7 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 60 EEVDMEIPGPPHMDKLEIGKPE---ANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESV 115
EEVD + PH + +P+ + ATV+ +FVG +K D EE L+ Y Q+G +++
Sbjct: 61 EEVDAAMNARPHKVDARVVEPKRDVSEATVQNIFVGDIKEDTEEYHLQNYLEQYGKTKAI 120
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + +G KRGFAF+ F+ +D + +I
Sbjct: 121 ESMNDLGSGKKRGFAFMTFDGHDSIGRI 148
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 138 (53.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 77 IGKPEANAT-VK---KMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAF 131
+G+PE T +K KMF+GGL + D L+EYFSQFG ++ ++ + TG RGF F
Sbjct: 96 VGEPEPQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGF 155
Query: 132 IEFNDYDVVDKI 143
+ F D V+ +
Sbjct: 156 LTFKDPKTVNTV 167
Score = 117 (46.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 74 KLEIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
K I + E T K+FVGG+ + E D +++F QFG + ++ +K+TG RGF F+
Sbjct: 182 KRAIPRDEQEKT-SKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFV 240
Query: 133 EFNDYDVVD 141
F+ V+
Sbjct: 241 TFDSEAAVE 249
Score = 34 (17.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 144 RGFAFIEFNDYDVVD 158
RGF F+ F+ V+
Sbjct: 235 RGFGFVTFDSEAAVE 249
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQEE-DDLREYFSQFGTIES 114
AQ E+D + P +P+ KK+FVGGL +D+++YF QFG +E
Sbjct: 80 AQPHHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSASTVVEDVKQYFEQFGKVED 138
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F + D+V+K+ F E N+
Sbjct: 139 AMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINN 177
Score = 121 (47.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 88 KMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL Q D LR+YF +FG I ++ + T RGF FI F D VDK+
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKV 78
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 146 (56.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 70 PHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRG 128
P DK + E+N + K+++V G++ D ED L EYF+++GT+ ++ +K T RG
Sbjct: 100 PRDDK---NRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 156
Query: 129 FAFIEFNDYDVVDK 142
F F+ F+D+D VD+
Sbjct: 157 FGFVTFDDHDSVDQ 170
Score = 119 (46.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 74 KLEIGKPEANA---TVKKMFVGGLKDQEEDDL-REYFSQFGTIESVNMVTNKETGAKRGF 129
K E G +A+ ++K+FVGGL DDL RE++SQFG I + ++ + T RGF
Sbjct: 7 KAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGF 66
Query: 130 AFIEFNDYDVVD 141
F+ F+ VD
Sbjct: 67 GFVTFSGKTEVD 78
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
KK+FVGGL + +D+++YF QFG +E ++ +K T RGF F+ F + DVV+K+
Sbjct: 49 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 108
Query: 146 FAFIEFND 153
F E N+
Sbjct: 109 IHFHEINN 116
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 145 (56.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 36/90 (40%), Positives = 50/90 (55%)
Query: 60 EEVDMEIPGPPH-MDKLEIGKPEANAT----VKKMFVGGLKDQE-EDDLREYFSQFGTIE 113
E VD + H +D I +A A +KK+FVGGL + ED +REYF FG IE
Sbjct: 116 ESVDKVLEHKEHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGEIE 175
Query: 114 SVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++ + + +T +RGF FI F + D V KI
Sbjct: 176 AIELPMDPKTNKRRGFVFITFKEEDPVKKI 205
Score = 134 (52.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMFVGGL D + DL++YF++FG + + + TG RGF FI F D + VDK+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKV 121
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 41 VVTTRPTINNKAMEEAQSEEEVDMEI----PGPPHMDKLEIGKPEANATVKKMFVGGLKD 96
V+ + I+ + +E ++ D ++ P H+ G A KK+FVGGL
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 97 Q-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFN 152
E + + YF QFGTI V ++ + T RGF FI F+ + VD + F E N
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELN 188
Score = 123 (48.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
K E+ + + K+F+GG+ D +E+ L+EYF ++G + ++ ++ TG RGF FI F D
Sbjct: 7 KMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADP 66
Query: 138 DVVDKI 143
V +++
Sbjct: 67 SVAERV 72
Score = 46 (21.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 144 RGFAFIEFNDYDVVDKIVCK 163
RGF FI F+ + VD ++ K
Sbjct: 163 RGFGFITFDSEESVDMVLHK 182
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 142 (55.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + +T +RGF FI F + D V K+
Sbjct: 83 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKV 141
Score = 121 (47.7 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMFVGGL D + DL++YF++FG + + + TG RGF FI F + V+K+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKV 57
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 143 (55.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 79 KPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
KP + KK+FVGGL D E DLR +F QFG ++ + +K+T A+R FAFI F +
Sbjct: 102 KPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEE 161
Query: 138 DVVDK 142
+ DK
Sbjct: 162 ESADK 166
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 60 EEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMV 118
E D +I G E G KK+FVGG+ + +DL +F+Q+G + +
Sbjct: 2 EATDNKINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVK 61
Query: 119 TNKETGAKRGFAFIEF 134
++ G RGFAF+EF
Sbjct: 62 YDRTNGRSRGFAFVEF 77
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 143 (55.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 35/93 (37%), Positives = 51/93 (54%)
Query: 57 QSEEEVDMEIPGPPH-MDKLEIGKPEANAT----VKKMFVGGLKDQE-EDDLREYFSQFG 110
+ + VD + H +D +I A A VKK+FVGGL + E+ +REYF FG
Sbjct: 94 KESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFG 153
Query: 111 TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
IE++ + T+ +T +RGF FI F + V KI
Sbjct: 154 EIETIELPTDPKTSKRRGFVFITFKEEFAVKKI 186
Score = 137 (53.3 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 75 LEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 133
L+I + KMFVGGL D + DL++YFS+FG + + + TG RGF FI
Sbjct: 33 LQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFIL 92
Query: 134 FNDYDVVDKI 143
F + D VD++
Sbjct: 93 FKESDSVDRV 102
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 143 (55.4 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/94 (37%), Positives = 54/94 (57%)
Query: 54 EEAQSEEEVDMEIPGPPHMDKLEIGKPEANAT---VKKMFVGGLK-DQEEDDLREYFSQF 109
+EA+S E+V + + ++ K +A T VKK+FVGGL D E+ +REYF +
Sbjct: 103 KEAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAY 162
Query: 110 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
G +ES+ + +T +RGF FI F + + V KI
Sbjct: 163 GEVESIELPMENKTNKRRGFCFITFKEEEPVKKI 196
Score = 126 (49.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 46 PTINNKAMEEAQS--EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDL 102
PT+ + ++ + EE++ + G + +I + KMFVGGL D + DL
Sbjct: 11 PTMKMEENDDGEGFGEEQMSGDNGGQGEAEGSKIDASKNEEDEGKMFVGGLSWDTTKKDL 70
Query: 103 REYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
++YF++FG + + + TG RGF F+ F + + V+K+
Sbjct: 71 KDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKV 111
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 142 (55.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 79 KPEANATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
+P A+ TVKK+FVG +D E +F Q+G IE + ++T++ +G KRGFAF+ F+D D
Sbjct: 96 RPGAHLTVKKIFVGVKEDTEG----HHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPD 151
Query: 139 VVDKI 143
VD I
Sbjct: 152 SVDTI 156
Score = 84 (34.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 72 MDKLEIGK-PEANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGF 129
M K E K PE + K+F+GGL + D+ LR +F Q+GT+ M + RGF
Sbjct: 1 MSKSESTKEPEQ---LWKLFIGGLSFKTTDESLRSHFEQWGTLTDCVM-RDPNNKISRGF 56
Query: 130 AFIEFNDYDVVD 141
F+ + + +D
Sbjct: 57 GFVTYTTVEELD 68
Score = 65 (27.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 142 KIRGFAFIEFNDYDVVDKIVC-KYN 165
K RGFAF+ F+D D VD IV KY+
Sbjct: 138 KKRGFAFVTFDDPDSVDTIVIQKYH 162
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 144 (55.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI-RG 145
K+F+GG+ D +E+ LREYFS FG + V ++ K TG RGF F+ F+D V+D++ +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 146 FAFIEFNDYDV 156
I+ D DV
Sbjct: 67 KHHIDNRDVDV 77
Score = 119 (46.9 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 82 ANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 140
AN KK+FVGGL D+ R YF +G + ++ ++ T RGF F+ F+ D V
Sbjct: 105 ANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSV 164
Query: 141 DKIRGFAFIEFNDYDV 156
D + F + N V
Sbjct: 165 DLVLHKTFHDLNGKQV 180
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 146 (56.5 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 28/64 (43%), Positives = 45/64 (70%)
Query: 81 EANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
+AN T KK+FVGG+ +D ++++ YFSQFG +E M+ +++T RGF F+ F + DV
Sbjct: 286 QANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDV 344
Query: 140 VDKI 143
VD++
Sbjct: 345 VDRV 348
Score = 118 (46.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 88 KMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
K+FVGGL Q D L+EYF+ FGT+ V ++ + T RGF FI F + V+K+
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKV 260
Score = 57 (25.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 144 RGFAFIEFNDYDVVDKIVCK 163
RGF F+ F + DVVD+ VC+
Sbjct: 332 RGFGFVTFENEDVVDR-VCE 350
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 142 (55.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 56 AQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIES 114
AQS E+D + P +P+ KK+FVGGL + +D+++YF QF ++
Sbjct: 79 AQSRHELDSKTIDPKVAFPRR-AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDD 137
Query: 115 VNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFND 153
++ +K T RGF F+ F D+V+K+ F E N+
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINN 176
Score = 121 (47.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 77 IGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
+ P++ KMF+GGL Q ++ LREYF QFG ++ ++ + T RGF F+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 136 DYDVVDKI 143
D VDK+
Sbjct: 70 DQAGVDKV 77
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 6 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 60
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 61 PMDTKTNERRGFCFITYTDEEPVKKL 86
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 139 (54.0 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF QFG IE++ + + + +RGF FI F + D V K+
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Score = 133 (51.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 63 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 120
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 121 ILFKDSSSVEKV 132
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 139 (54.0 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF QFG IE++ + + + +RGF FI F + D V K+
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Score = 133 (51.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 63 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 120
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 121 ILFKDSSSVEKV 132
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 139 (54.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF QFG IE++ + + + +RGF FI F + D V K+
Sbjct: 171 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 229
Score = 133 (51.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 76 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 133
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 134 ILFKDSSSVEKV 145
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 138 (53.6 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + +T +RGF FI F + + V K+
Sbjct: 147 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKV 205
Score = 127 (49.8 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIE--SVNMVTNKETGAKRGF 129
D++ K E +A KMFVGGL D + DL++YF++FG + ++ MV N TG +GF
Sbjct: 52 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPN--TGRSKGF 107
Query: 130 AFIEFNDYDVVDKI 143
FI F D V+K+
Sbjct: 108 GFILFKDAASVEKV 121
>UNIPROTKB|I3LP80 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
EMBL:CU627987 Ensembl:ENSSSCT00000027195 OMA:NVVEMEM Uniprot:I3LP80
Length = 231
Score = 135 (52.6 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 59 EEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
E ++D ++ P L+ +P KK+FVGGL D E+ ++EYF FG IE++ +
Sbjct: 2 EHKLDGKLIDPKRAKALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 56
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDKI 143
+ +T +RGF FI + D + V K+
Sbjct: 57 PMDTKTNERRGFCFITYTDEEPVKKL 82
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 142 (55.0 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 35/115 (30%), Positives = 56/115 (48%)
Query: 41 VVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPE--ANATVKKMFVGGLKDQ- 97
V+ + I+ + +E ++ D ++ H + + P KK+FVGGL
Sbjct: 63 VIMDKHIIDGRTVEAKKAVPRDDQQVL-KRHASPIHLMSPVHGGGGRTKKIFVGGLPSSI 121
Query: 98 EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFN 152
E++ + YF QFGTI V ++ + T RGF FI F+ D VD++ F E N
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Score = 117 (46.2 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
K+F+GG+ D +E+ LR+YFS +G + ++ ++ TG RGF FI F D V +++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Score = 54 (24.1 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 144 RGFAFIEFNDYDVVDKIVCK 163
RGF FI F+ D VD+++ K
Sbjct: 151 RGFGFITFDSDDAVDRVLHK 170
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 139 (54.0 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF QFG IE++ + + + +RGF FI F + D V K+
Sbjct: 157 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 215
Score = 133 (51.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 62 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 119
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 120 ILFKDSSSVEKV 131
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 139 (54.0 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF QFG IE++ + + + +RGF FI F + D V K+
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216
Score = 133 (51.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 63 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 120
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 121 ILFKDSSSVEKV 132
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 141 (54.7 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 33/113 (29%), Positives = 55/113 (48%)
Query: 41 VVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQ-EE 99
V+T + I+ + +E ++ D + + ++ G P +K+FVGGL E
Sbjct: 63 VITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQ-GSPGGPGRTRKIFVGGLPSSVTE 121
Query: 100 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFN 152
D + YF QFGT V ++ + T RGF FI ++ + V+K+ F E N
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELN 174
Score = 114 (45.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
K+F+GG+ D E+ L+EYFS FG + ++ ++ TG RGF F+ F D V +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>UNIPROTKB|J9PBE1 [details] [associations]
symbol:J9PBE1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03009875
Ensembl:ENSCAFT00000009290 Uniprot:J9PBE1
Length = 342
Score = 138 (53.6 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 58 SEEEVD--MEI-P---GPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFG 110
S EEVD M + P G + + + +P A+ ++KK F GG+K D EE LR+YF G
Sbjct: 63 SAEEVDAVMNVRPCKVGGRAVSREDFQRPGAHLSMKKFFFGGIKEDTEEHHLRDYFKHKG 122
Query: 111 TIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+E + ++ ++ KR FAF+ F+D+D VD
Sbjct: 123 KVEVIEIML-RQWQKKRDFAFVTFDDHDSVD 152
>UNIPROTKB|F1MZQ6 [details] [associations]
symbol:F1MZQ6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02073436 IPI:IPI00689139
Ensembl:ENSBTAT00000030499 Uniprot:F1MZQ6
Length = 284
Score = 136 (52.9 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 81 EANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
+A+ TVKK+F G K D EE LR+YF Q+G N ++ +G KRGFAF+ +D+D
Sbjct: 78 DAHLTVKKIFAGDNKEDAEEHHLRDYFEQYGKTGDQNQ-NHQGSGQKRGFAFVVSDDHDS 136
Query: 140 VDK 142
+DK
Sbjct: 137 IDK 139
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 138 (53.6 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF-NDYDVVDKIRG 145
K+FVGG+ K+ E+ L++YFS++G + + K TG RGF F+ F ND DVV +R
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 146 FAFIEFNDYDVVDKIVCKYNI 166
FI DV K + K+ +
Sbjct: 67 THFILGKPVDV-RKAIRKHEL 86
Score = 114 (45.2 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 76 EIGKPEANATVKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
E+ + KK+FVGGL E++ + YF +FG V ++ + T RGF F+ +
Sbjct: 109 EMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY 168
Query: 135 NDYDVVDKIRGFAFIEFNDYDV-VDKIVCKYNIE 167
+ D V+ + F E +D V V + + K I+
Sbjct: 169 DSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQ 202
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + ++ +RGF FI F + + V K+
Sbjct: 83 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKV 141
Score = 124 (48.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMFVGGL D + DL++YF++FG + + + TG RGF FI F D V+K+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 57
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 134 (52.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + ++ +RGF FI F + + V K+
Sbjct: 153 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKV 211
Score = 132 (51.5 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 58 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 116 ILFKDATSVEKV 127
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 74 KLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
K++ K E + KMF+GGL D + DL++YFS+FG + + + TG RGF F+
Sbjct: 67 KIDASKNEEDEG--KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFV 124
Query: 133 EFNDYDVVDKI 143
F + + VDK+
Sbjct: 125 LFKESESVDKV 135
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 132 (51.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P A+ T+KK+FVGG+K D EE LR+Y Q G E + T++ +G KR FAF+ F++
Sbjct: 98 RPGAHLTMKKIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSG-KRDFAFVTFDNS 156
Query: 138 DVVDKI 143
VDKI
Sbjct: 157 --VDKI 160
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 132 (51.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + + +RGF FI F + + V K+
Sbjct: 153 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 131 (51.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 58 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 116 ILFKDAASVEKV 127
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 132 (51.5 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + + +RGF FI F + + V K+
Sbjct: 153 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 131 (51.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 58 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 116 ILFKDAASVEKV 127
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 109 (43.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 81 EANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
EA++T K ++VG L + E ++E F++FG + +V ++ +K TG +RGF F+
Sbjct: 58 EASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV 110
Score = 37 (18.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 42 VTTRPTINNKAMEEAQS 58
++T PT+++ EEA S
Sbjct: 45 LSTHPTLSSSEDEEASS 61
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 109 (43.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 81 EANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFI 132
EA++T K ++VG L + E ++E F++FG + +V ++ +K TG +RGF F+
Sbjct: 58 EASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFV 110
Score = 37 (18.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 42 VTTRPTINNKAMEEAQS 58
++T PT+++ EEA S
Sbjct: 45 LSTHPTLSSSEDEEASS 61
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 88 KMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL Q D LR+YFS+FG I ++ + T RGF F+ F D VDK+ G
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 147 AFIEFNDYDVVDKI 160
E + + K+
Sbjct: 78 PHHELDSKTIDPKV 91
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 89 MFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK-IRGF 146
++VG Q EDDL YFSQ G + +V +V ++ETG RGFAF+EF + + + F
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 147 AFIEFN 152
++FN
Sbjct: 66 NGVDFN 71
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 89 MFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK-IRGF 146
++VG Q EDDL YFSQ G + +V +V ++ETG RGFAF+EF + + + F
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 147 AFIEFN 152
++FN
Sbjct: 66 NGVDFN 71
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 62 VDMEIPGPPH-MDKLEIGKPEANAT----VKKMFVGGLKDQE-EDDLREYFSQFGTIESV 115
VD + H +D +I +A A VKK+FVGGL + E+ +REYF FG IE++
Sbjct: 149 VDKVLAQKEHRLDGRQIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETI 208
Query: 116 NMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + ++ +RGF FI F + + V KI
Sbjct: 209 ELPMDPKSNKRRGFVFITFKEEEAVKKI 236
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 34/96 (35%), Positives = 45/96 (46%)
Query: 49 NNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFS 107
N A AQ D G D +I + KMFVGGL D + DL++YFS
Sbjct: 58 NGDAQAGAQGNAGAD-GTAGDDGADGGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFS 116
Query: 108 QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+FG + + + TG RGF FI F + VDK+
Sbjct: 117 KFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKV 152
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 130 (50.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 60 EEVDMEIPGPPHMDKLEIGKPEANATVKKM------FVGGLK-DQEEDDLREYFSQFGTI 112
EEVD + PH K++ E N V + FV G+K D EE L+ + Q+G I
Sbjct: 52 EEVDAAMNARPH--KVDARVVEPNRAVSREDSQRPGFVCGIKEDTEEHHLQNNYEQYGQI 109
Query: 113 ESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
E + ++T++ G KR FAF+ F+D+D+ D+I
Sbjct: 110 EVIEIMTDRGLGKKRDFAFVTFHDHDL-DEI 139
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 128 (50.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 53 MEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGT 111
++ +++EE+ P H + + E KMF+GGL D + DL++YFS+FG
Sbjct: 68 IDASKNEEDEGHSNSSPRHSEAATAQREEW-----KMFIGGLSWDTTKKDLKDYFSKFGE 122
Query: 112 IESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ + + TG RGF F+ F + + VDK+
Sbjct: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
Score = 103 (41.3 bits), Expect = 0.00061, P = 0.00061
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 152 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 204
Query: 109 FGTIESVNMVTNKET 123
FG +ES+ + + +T
Sbjct: 205 FGEVESIELPMDNKT 219
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 132 (51.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 86 VKKMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + + +RGF FI F + + V K+
Sbjct: 153 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 131 (51.2 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 58 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 116 ILFKDAASVEKV 127
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 134 (52.2 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 49 NNKAMEEAQSEEE-VDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYF 106
N K + E S+E +D +I P K I + E T K MFVGG+ D E++ R +F
Sbjct: 213 NPKCVNEVMSKEHHLDGKIIDP----KRAIPREEQEKTAK-MFVGGVPGDCTEEEFRNFF 267
Query: 107 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+QFG + ++ +K+TG RGF F+ + + V+
Sbjct: 268 NQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
Score = 119 (46.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 88 KMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL + DD LR+YF QFG + ++ + TG RGF F+ F + V+++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 88 KMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
KMF+GGL Q D LR+YFS+FG I ++ + T RGF F+ F D VDK+ G
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 80
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 131 (51.2 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 86 VKKMFVGGLKDQE--EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
VKK+FVGGL + E+ +REYF +FG IE++ + + + +RGF FI F + + V K+
Sbjct: 152 VKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKV 211
Score = 131 (51.2 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 57 DQINASKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 114
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 115 ILFKDAASVEKV 126
>UNIPROTKB|F1N9H6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0008266 "poly(U) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:AADN02043198 EMBL:AADN02043199 EMBL:AADN02043200
EMBL:AADN02043201 IPI:IPI00818302 ProteinModelPortal:F1N9H6
Ensembl:ENSGALT00000011697 ArrayExpress:F1N9H6 Uniprot:F1N9H6
Length = 273
Score = 129 (50.5 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ KK+FVGGL + +D+++YF QFG + ++ V +K GF F+ F
Sbjct: 12 QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVSLLSGVGSKSFAFSSGFGFVTFESE 71
Query: 138 DVVDKIRGFAFIEFND 153
D+V+K+ F E N+
Sbjct: 72 DIVEKVCEIHFHEINN 87
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
K++VGGL + + LR YF QFG I VNMV ++ETG G+ F+ F D
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRD 102
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF-NDYDVVDKIRG 145
K+F+GGL D E L + FS++G I +V++ N+ET RGF F+ F N D D + G
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 125 (49.1 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 70 PH-MD-KLEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAK 126
PH +D + + G N+ K+FVGG+ E +LREYF +FG + V M+ + E
Sbjct: 72 PHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRP 131
Query: 127 RGFAFIEFNDYDVVDK 142
RGF FI F D VD+
Sbjct: 132 RGFGFITFEDEQSVDQ 147
Score = 112 (44.5 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 86 VKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ K+FVGGL ++ LR YFSQ+G + ++ +K T RGF F++F D + V +
Sbjct: 9 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 128 (50.1 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 80 PEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P + T K+FVGGL + D++R YF QFG I ++T+K TG +G+ F+ F D D
Sbjct: 10 PFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSD 69
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 127 (49.8 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 54 EEAQSEEEVDMEIPGPPH-MDKLEIGKPEANATV---KKMFVGGLK-DQEEDDLREYFSQ 108
+EA S ++V +E+ H +D + I A A KK+FVGGL D E+ ++EY
Sbjct: 60 KEAASVDKV-LELK--EHKLDSMLIDPKRAKALKEPPKKVFVGGLSPDTYEEQIKEYLGA 116
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
FG IE++ + + +T +RGF FI + D V K+
Sbjct: 117 FGEIENIELPMDTKTNERRGFCFITYTDEKPVKKL 151
>UNIPROTKB|F1PW36 [details] [associations]
symbol:F1PW36 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03009913
ProteinModelPortal:F1PW36 Ensembl:ENSCAFT00000009888 Uniprot:F1PW36
Length = 230
Score = 125 (49.1 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 60 EEVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNM 117
++VD + P + + + K A+ TVK++FV G+K D EE LR+YF +G E ++
Sbjct: 52 QKVDGRVEEPKTAVSREDSQKHGAHLTVKRIFVDGIKEDTEEYRLRDYFEPYGKTEVNDI 111
Query: 118 VTNKETGAKRGFAFIEFNDYDVVDK 142
+T++ + K GFA + F+D+D V K
Sbjct: 112 MTDQGSSKKTGFA-LTFDDHDSVHK 135
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 128 (50.1 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 73 DKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAF 131
D++ K E +A KMFVGGL D + DL++YF++FG + + + TG RGF F
Sbjct: 70 DQITPSKNEEDAG--KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 127
Query: 132 IEFNDYDVVDKI 143
I F D V+K+
Sbjct: 128 ILFKDAASVEKV 139
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 127 (49.8 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 80 PEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P + T K+FVGGL + D++R YF QFG I ++T+K TG +G+ F+ F + D
Sbjct: 10 PFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 89 MFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
MF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 56
Score = 94 (38.1 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
+K M+ Q E +++ ++ P ++ +P VKK+FVGGL D E+ +REYF
Sbjct: 54 DKVMD--QKEHKLNGKVIDPKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFGG 106
Query: 109 FGTIES 114
FG +ES
Sbjct: 107 FGEVES 112
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/99 (28%), Positives = 54/99 (54%)
Query: 46 PTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQ-EEDDLRE 104
P++ +K +E+ +EI + K G + KK+FVGG+ ED+L++
Sbjct: 70 PSVVDKVIEDTHVINGKQVEIKRT--IPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKD 127
Query: 105 YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+F+++G + ++ + ET RGF F+ F+ +VVD++
Sbjct: 128 FFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Score = 112 (44.5 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 84 ATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
A+ K+F+GGL KD ++F ++G I ++ ++ TG RGF FI F D VVDK
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 143 I 143
+
Sbjct: 76 V 76
>POMBASE|SPBC365.04c [details] [associations]
symbol:SPBC365.04c "RNA-binding protein, involved in
ribosome biogenesis (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISS;IDA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC365.04c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0042254 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000001011 KO:K14789 OMA:GPRFILF OrthoDB:EOG4JHGRC
PIR:T40311 RefSeq:NP_596033.1 ProteinModelPortal:Q9Y7Y3
STRING:Q9Y7Y3 PRIDE:Q9Y7Y3 EnsemblFungi:SPBC365.04c.1
GeneID:2540924 KEGG:spo:SPBC365.04c NextBio:20802039 Uniprot:Q9Y7Y3
Length = 233
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 40/135 (29%), Positives = 67/135 (49%)
Query: 21 FESKCPS---HEVRLAVEAGVLEVVTTRPTINNKAMEE--AQSEEEVDMEIPGPPHMD-K 74
F+ K S HE ++ + LE ++ E+ AQS ++ + PPH K
Sbjct: 20 FDKKSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKHSVSNPPHKTLK 79
Query: 75 LEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 133
+ K + N +FVG L KD + L+ +F + G + SV + T+K +G ++G+AF+E
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 134 FND--YDVVDKIRGF 146
F + DV+ K F
Sbjct: 140 FINPKTDVISKALKF 154
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
K+FVGG+ + +ED LRE+F+ +G + ++ +K TG RGF F+ F+D V+D++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Score = 120 (47.3 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/112 (24%), Positives = 59/112 (52%)
Query: 35 EAGVLE-VVTTRPTINNKAMEEAQSEEEVDMEIPGPP-HMDKLEIGKPEANATVKKMFVG 92
+ VL+ V+ + +I+ + ++ ++ + ++ G +++ +A KK+FVG
Sbjct: 56 DPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVG 115
Query: 93 GLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
GL +++ R+YF +G + V ++ ++ T RGF F+ F+ D VD +
Sbjct: 116 GLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV 167
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 126 (49.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 87 KKMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
KK+F+GGL +D+++YF +G +E ++ +K T RGF F+ F+ +V DK+
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193
Query: 146 FAFIEFN 152
F E N
Sbjct: 194 IHFHEIN 200
Score = 113 (44.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 88 KMFVGGLKDQEE-DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KMF+GGL Q ++LR+YF +FG + ++ + T RGF FI F D VDK+
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKV 102
>UNIPROTKB|F1NSZ7 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AADN02043198 EMBL:AADN02043199
EMBL:AADN02043200 EMBL:AADN02043201 IPI:IPI00576372
Ensembl:ENSGALT00000008924 ArrayExpress:F1NSZ7 Uniprot:F1NSZ7
Length = 262
Score = 124 (48.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 79 KPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
+P+ KK+FVGGL + +D+++YF QFG + S + ++E + R F F+ F
Sbjct: 12 QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESE 71
Query: 138 DVVDKIRGFAFIEFND 153
D+V+K+ F E N+
Sbjct: 72 DIVEKVCEIHFHEINN 87
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 85 TVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+V ++FVG L +LR YF +FG + S N++ +K TG +G+ F+ FN ++KI
Sbjct: 13 SVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKI 72
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 88 KMFVGGLKDQEED-DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
K+F+GGL +D LR+ F+ FG + ++ ++ETG RGF F+ FND
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 54 EEAQSEEEV--DMEIPGPPHMD-KLEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQF 109
E+A+S + + D + +D K I K E V K+FVGG+ E++ +FSQF
Sbjct: 211 EDAKSVDALLKDRHVLDGKLIDPKRAISK-EDQEKVGKIFVGGIDPMVTEEEFDNFFSQF 269
Query: 110 GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
G I ++ +K+TG RGF F+ ++ VDK+
Sbjct: 270 GKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKV 303
Score = 111 (44.1 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 67 PGPPHMDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGA 125
P PP A +K F+GGL D E+ L +F ++G I ++ + TG
Sbjct: 142 PPPPAPTANATSAESAGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGR 201
Query: 126 KRGFAFIEFNDYDVVDKI 143
RGF F+ F D VD +
Sbjct: 202 SRGFGFLTFEDAKSVDAL 219
Score = 46 (21.3 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 144 RGFAFIEFNDYDVVDKI-VCKY 164
RGF F+ ++ VDK+ V KY
Sbjct: 287 RGFGFVTYDSPAAVDKVCVNKY 308
Score = 40 (19.1 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 41 VVTTRPTINNKAMEEAQSEEEVDME-IPGPP 70
VV T N + E ++ E + E +P PP
Sbjct: 40 VVETASATENASSAEVETTTEGESESVPPPP 70
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 88 KMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
K+F+GGL DD LRE FS++GTIE +V +++T RGF F+ F D G
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMG 61
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
K++VG L D D+L+ +F Q+G IE ++ ++ETG +GFAFI + D +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
K++VG L D D+L+ +F Q+G IE ++ ++ETG +GFAFI + D +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 124 (48.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 87 KKMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI-R 144
K++FVG L D ++ L E+FSQ GT+ +V++ T +++G +G+A++EF D + R
Sbjct: 180 KRLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCKGYAWVEFEDLEAAKTAER 239
Query: 145 GFAFIEFNDYDVVD 158
G+ +I ++ D D
Sbjct: 240 GYKYITEDNEDEDD 253
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 122 (48.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 81 EANATVKKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
+ + T K+FVGGL D LR+YF FG IE ++T+++TG RG+ F+ D
Sbjct: 5 QKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSA 64
Query: 140 VDK 142
D+
Sbjct: 65 ADR 67
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 81 EANATVKKMFVGGLKDQEED-DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
+ + T K+FVGGL D LR+YF FG IE ++T+++TG RG+ F+ D
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 61
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 123 (48.4 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 87 KKMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
KK+FVGG+ +DD +E+F QFG ++ ++ + TG RGF F+ + D+VD +
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHL 187
Score = 110 (43.8 bits), Expect = 0.00024, P = 0.00024
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 55 EAQSEEEVDMEIPGPPHMDKLEIGKPEANATVK---KMFVGGL-KDQEEDDLREYFSQFG 110
E E+E+ P D + +P + V K+FVGGL ++ + ++F ++G
Sbjct: 7 ETVIEDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYG 66
Query: 111 TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
I ++ +++TG RGF F+ + D VVDK+
Sbjct: 67 EITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV 99
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 121 (47.7 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF-NDYDVVD 141
K+F+GGL D E L E FS++GTI V+++ ++ET RGF F+ F N D D
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKD 79
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
K+FVGGL D E L + FS++G I V +V ++ET RGF F+ F + D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID 58
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
K+FVGGL D E L + FS++G I V +V ++ET RGF F+ F + D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID 58
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
K+FVGGL D E L + FS++G I V +V ++ET RGF F+ F + D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID 58
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
K+FVGGL D E L + FS++G I V +V ++ET RGF F+ F + D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID 58
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 120 (47.3 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 67 PGPPHMDKLEIGKPEANATVKKMFVGGLKDQEED-DLREYFSQFGTIESVNMVTNKETGA 125
P PP G + + T K+FVGGL D LR+YF FG IE ++T+++TG
Sbjct: 15 PRPPAAPGAMHGS-QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGK 73
Query: 126 KRGFAFIEFND 136
RG+ F+ D
Sbjct: 74 SRGYGFVTMAD 84
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 122 (48.0 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 28/102 (27%), Positives = 54/102 (52%)
Query: 48 INNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEAN---ATV--KKMFVGGLKDQ-EEDD 101
+ ++ + ++ + D P P + + + P + TV ++FVGG+ + E+D
Sbjct: 1 METESRAQTTNQTQTDSLSPSPNPVSPVPLNNPTSGPRYGTVIPNRIFVGGIDFKTNEND 60
Query: 102 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
LR++FSQ+G+++ V +V N G +G+ FI F + KI
Sbjct: 61 LRKFFSQYGSVKEVKIV-NDRAGVSKGYGFITFETQEDAQKI 101
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 121 (47.7 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 53 MEEAQSEE--EVDMEIPGPPH-MDKLEIGKPEANATVKKMFVGGLK-DQEEDDLREYFSQ 108
++ A +E +VD + P + + + + + TVKK+FVG +K D EE LR+YF Q
Sbjct: 54 VDAAMNERPHKVDERVLEPKRAVSREDSERTGTHLTVKKIFVGVVKEDTEEHHLRDYFEQ 113
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+G I+ K GF F F+D+D VDKI
Sbjct: 114 YGKIQ--------RQWKKEGFCFFTFDDHDSVDKI 140
Score = 93 (37.8 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 88 KMFVGGLKDQEEDD-LREYFSQFGTIESVNMVTNKETGAKR--GFAFIEFNDYDVVD 141
K+F+GGL ++ D+ LR +F Q+GT+ N V ++ KR GF F+ + + VD
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTL--TNSVVMRDPNTKRSGGFGFVTYATVEEVD 55
Score = 64 (27.6 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 142 KIRGFAFIEFNDYDVVDKIVC-KYN 165
K GF F F+D+D VDKIV KY+
Sbjct: 122 KKEGFCFFTFDDHDSVDKIVIQKYH 146
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 122 (48.0 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 78 GKPEANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
G N+ K+FVGG+ E +LREYF +FG + V M+ + E RGF FI F D
Sbjct: 47 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 106
Query: 137 YDVVDK 142
VD+
Sbjct: 107 EQSVDQ 112
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 114 (45.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 88 KMFVGGLK-DQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
K+FVGGL D E L + FS++G I V +V ++ET RGF F+ F + D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID 58
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 88 KMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
+++VG L E+DL +YFS+FG IESV +V N TG +G+AF+ +
Sbjct: 45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTY 92
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 88 KMFVGGLKDQE-EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 134
+++VG L E+DL +YFS+FG IESV +V N TG +G+AF+ +
Sbjct: 45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTY 92
WARNING: HSPs involving 337 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 168 168 0.00079 108 3 11 22 0.43 32
31 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 587
No. of states in DFA: 575 (61 KB)
Total size of DFA: 143 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.75u 0.10s 18.85t Elapsed: 00:00:23
Total cpu time: 18.78u 0.10s 18.88t Elapsed: 00:00:29
Start: Thu Aug 15 13:27:45 2013 End: Thu Aug 15 13:28:14 2013
WARNINGS ISSUED: 2