RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy40
(168 letters)
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 52.3 bits (125), Expect = 2e-10
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL ++ LREYF QFG ++ ++ + T RGF F+ F D VDK+
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 147 AFIEFN 152
+ E +
Sbjct: 62 SRHELD 67
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 51.2 bits (122), Expect = 6e-10
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 86 VKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIR 144
++K+F+GGL + ++ LR +F Q+GT+ ++ + T RGF F+ + + VD
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA- 64
Query: 145 GFAFIEFNDYDVVDKIV 161
+ + V ++V
Sbjct: 65 ----MNARPHKVDGRVV 77
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 51.0 bits (122), Expect = 9e-10
Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 78 GKPEANATVKKMFVGGL--KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
GK + + ++F+G L ++ D+ FS++G I ++ +GFAF+++
Sbjct: 7 GKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYV 58
Query: 136 DYDVVDKIRGFAFIEFNDYDVVDKIV 161
+ A + + +++
Sbjct: 59 NERNARA----AVAGEDGRMIAGQVL 80
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 49.9 bits (119), Expect = 2e-09
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKE-TGAKRGFAFIEFNDYDVVDK 142
K+ V + + ++RE FS FG +++V + TGA RGF F++F K
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 49.3 bits (117), Expect = 3e-09
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 85 TVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
TVKK+FVGG+ +D EE LR+YF Q+G IE + ++T++ +G KRGFAF+ F+D+D VDKI
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 144 RGFAFIEFND 153
+ N
Sbjct: 61 VIQKYHTVNG 70
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 51.5 bits (122), Expect = 3e-09
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 86 VKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
++K+F+GGL + ++ LR +F Q+GT+ ++ + T RGF F+ + + VD
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Score = 44.6 bits (104), Expect = 8e-07
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 50 NKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQ-EEDDLREYFSQ 108
A A+ + + + + + +P A+ TVKK+FVGG+K+ EE LR+YF Q
Sbjct: 61 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 120
Query: 109 FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDV 156
+G IE + ++T++ +G KRGFAF+ F+D+D VDKI + N ++
Sbjct: 121 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 168
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 48.8 bits (116), Expect = 4e-09
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
++VG L D E L E FS G I S+ + + T G+A++ F ++
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER---- 57
Query: 147 AFIEFNDYDVVDKIV 161
A N + K V
Sbjct: 58 ALDTMNFDVIKGKPV 72
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.4 bits (115), Expect = 5e-09
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
K+FVGGL D E+ +REYF FG +ES+ + + +T +RGF FI F + + V K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 56
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 49.3 bits (117), Expect = 5e-09
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
+K+F+GGL + E+ LR Y+ Q+G + ++ + + RGF F+ F+ VD
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA-- 78
Query: 146 FAFIEFNDYDVVDKIV 161
+ + + ++V
Sbjct: 79 ---MAARPHSIDGRVV 91
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.2 bits (114), Expect = 8e-09
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVN-----MVTNKETGAKRGFAFIEFNDYDVV 140
++++VG + E+ + ++F+ + + V + + FAF+EF D
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 141 DKIRGFAFIEFND 153
+ F I F
Sbjct: 62 TQAMAFDGIIFQG 74
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 48.1 bits (114), Expect = 1e-08
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
+ +F L DL ++FS G + V +++++ + +G A++EF + V G
Sbjct: 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 78
Query: 146 FAFIEFND 153
Sbjct: 79 LTGQRLLG 86
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 47.7 bits (113), Expect = 1e-08
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 83 NATVK--KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
+A+++ ++V GL K + +L + FSQ+G I + ++ ++ TG RG FI F+
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 60
Query: 140 VDKIRGFAFIEFNDYDV 156
++ A N
Sbjct: 61 AEE----AIKGLNGQKP 73
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 47.6 bits (113), Expect = 1e-08
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
++V L + +D L F ++G+I N++ +K TG RG AF+ +N + +
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE---- 63
Query: 147 AFIEFNDYDV 156
A N+
Sbjct: 64 AISALNNVIP 73
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 47.3 bits (112), Expect = 1e-08
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
KMF+GGL D + DL++YFS+FG + + + TG RGF F+ F + + VDK+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 147 AFIEFN 152
+ N
Sbjct: 61 KEHKLN 66
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.5 bits (110), Expect = 3e-08
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
+ V GL E DL+EYFS FG + V + + +TG +GF F+ F +Y+ K
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 45.4 bits (107), Expect = 1e-07
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
K+F+GGL +D ++E + FG +++ N+V + TG +G+AF E+ D +V D+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ---- 58
Query: 147 AFIEFNDYDVVDKIV 161
A N + DK +
Sbjct: 59 AIAGLNGMQLGDKKL 73
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 43.8 bits (103), Expect = 3e-07
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
+ V L +D + +L F G I + ++ + +TG G+AF++F +
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQR---- 59
Query: 147 AFIEFNDYDVVDKIV 161
A N V +K +
Sbjct: 60 AIKVLNGITVRNKRL 74
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 43.9 bits (103), Expect = 3e-07
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 89 MFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIR 144
+F+ L E+ L+ FS+ G I+S + K GF F+E+ + K
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQK-- 58
Query: 145 GFAFIEFNDYDVVDKIV 161
A + + V +
Sbjct: 59 --ALKQLQGHTVDGHKL 73
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 42.4 bits (99), Expect = 8e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
K+FVGGL + +D++ YF QFG ++ ++ +K T RGF F+ F D+V+K+
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 147 AFIEFND 153
F E N+
Sbjct: 61 HFHEINN 67
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 42.6 bits (100), Expect = 1e-06
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
++VG L E+ + E FS+ G I+ + M +K GF F+E+ +
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN--- 64
Query: 146 FAFIEFNDYDVVDKIV 161
A N + D+I+
Sbjct: 65 -AMRYINGTRLDDRII 79
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 42.8 bits (100), Expect = 1e-06
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 80 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
+ + T K+FVGGL + LR+YF FG IE ++T+++TG RG+ F+ D
Sbjct: 4 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 139 VVDK 142
++
Sbjct: 64 AAER 67
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 41.6 bits (97), Expect = 2e-06
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 79 KPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 137
P+ N + V GL E DLRE FS++G I V++V ++++ RGFAF+ F +
Sbjct: 5 NPDPNCCL---GVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 61
Query: 138 DVVDKIRGFAFIEFNDYDVVDKIV 161
D + A N ++ + +
Sbjct: 62 DDAKE----AKERANGMELDGRRI 81
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 41.5 bits (97), Expect = 2e-06
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
K+ V L + D++E F++FGT++ + ++ +G G A + F K
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALK---- 56
Query: 147 AFIEFNDYDVVDKIV 161
A ++N + + +
Sbjct: 57 AMKQYNGVPLDGRPM 71
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 41.6 bits (97), Expect = 2e-06
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 77 IGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
I + +ATV +VGGL + E L E F Q G + + +M ++ TG +G+ F+EF
Sbjct: 3 ISERNQDATV---YVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFL 59
Query: 136 DYDVVDKIRGFAFIEFNDYDVVDKIV 161
+ D A + + K +
Sbjct: 60 SEEDADY----AIKIMDMIKLYGKPI 81
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 41.6 bits (97), Expect = 3e-06
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 78 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
G E+ +T K++ V + + DLR+ F QFG I V ++ N+ +GF F+ F +
Sbjct: 3 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFEN 60
Query: 137 YDVVDKIRGFAFIEFNDYDVVDKIV 161
D+ A + + V + +
Sbjct: 61 SADADR----AREKLHGTVVEGRKI 81
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 40.4 bits (94), Expect = 6e-06
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 85 TVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
T + ++VGGL ++ ++ L F FG I + + + ET RGFAF+EF +
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA- 62
Query: 144 RGFAFIEFNDYDVVDKIV 161
A N+ ++ + +
Sbjct: 63 ---AIDNMNESELFGRTI 77
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 40.1 bits (93), Expect = 8e-06
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 90 FVGGL-KDQEEDDLREYFSQFGTIESVNMV-TNKETGAKRGFAFIEFNDYDVVDK-IRGF 146
F+G L + +E L + FS FG I + + +TG +G+AFI F +D D I
Sbjct: 2 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 61
Query: 147 AFIEFND 153
+
Sbjct: 62 NGQYLCN 68
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 39.7 bits (92), Expect = 1e-05
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
+ V L ++ +++ R F G IES +V +K TG G+ F+ + D +K
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK---- 59
Query: 147 AFIEFNDYDVVDKIV 161
A N + K +
Sbjct: 60 AINTLNGLRLQTKTI 74
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 40.0 bits (93), Expect = 1e-05
Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 81 EANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
+++ ++ GG+ + +R+ FS FG I + + K ++F+ F+ ++
Sbjct: 13 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHES 66
Query: 140 VDKIRGFAFIEFNDYDVVDKIV 161
A + N + +V
Sbjct: 67 AAH----AIVSVNGTTIEGHVV 84
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 39.7 bits (92), Expect = 1e-05
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 78 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
GKP + V + D++ ++F + I + E G G A + F
Sbjct: 5 GKPGPT----IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 60
Query: 137 YDVVDKIRGFAFIEFNDYDVVDKIV 161
D A I+ ND + + V
Sbjct: 61 RDEATA----AVIDLNDRPIGSRKV 81
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 39.6 bits (92), Expect = 2e-05
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 24/87 (27%)
Query: 80 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
PE N + ++ L +++ + F ++G I + +
Sbjct: 4 PEVNRIL---YIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP----------------- 43
Query: 139 VVDKIRGFAFIEFNDYDVVDKIVCKYN 165
+ RG A++ + D +
Sbjct: 44 ---ETRGTAYVVYEDIFDAKNACDHLS 67
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 39.2 bits (91), Expect = 3e-05
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 82 ANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 140
+ V ++ V L D L + FS+FGT+ + T + A +++ D
Sbjct: 3 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSA 58
Query: 141 DKIRGFAFIEFNDYDVVDKIVCKYNIEF 168
A + + ++ + C I+F
Sbjct: 59 QH----AKLSLDGQNIYNAC-CTLRIDF 81
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 38.9 bits (90), Expect = 3e-05
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 78 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
G + F+G L D E+ ++E+F +GF + EF D
Sbjct: 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED 66
Query: 137 YDVVDKIRGFAFIEFND 153
D + +
Sbjct: 67 LDSLLSALSLNEESLGN 83
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 38.2 bits (88), Expect = 6e-05
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
++FV L E+DL + FS +G + ++ + T +GFAF+ F + K
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK--- 65
Query: 146 FAFIEFNDYDVVDKIV 161
A+ E + +++
Sbjct: 66 -AYAEVDGQVFQGRML 80
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 38.1 bits (88), Expect = 7e-05
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 82 ANATVKKMFVGGLKDQ-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 140
+ V + + D+ E+ E ++G +E +N+ N G +++F +
Sbjct: 23 LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDA 81
Query: 141 DKIRGFAFIEFNDYDVVDKIV 161
+K A I+ N+ + +
Sbjct: 82 EK----AVIDLNNRWFNGQPI 98
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 37.7 bits (87), Expect = 8e-05
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
+ V L +D E DL+E F FG+I + + +K TG +GFAFI F+ + +
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR--- 65
Query: 146 FAFIEFNDYDVVDKIV 161
A + + I+
Sbjct: 66 -AIAGVSGFGYDHLIL 80
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 37.4 bits (86), Expect = 9e-05
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
+++VG L D D+ + F ++G I + K FAF+EF D +
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIR---DIDLKNRRGGPPFAFVEFEDPRDAED---- 68
Query: 147 AFIEFNDYDVVDKIV 161
A + YD +
Sbjct: 69 AVYGRDGYDYDGYRL 83
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 36.9 bits (85), Expect = 1e-04
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 80 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
+ ++VK ++V L E+ + + F+ + R +AF+ F++ +
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNI------KPGAVERVKKIRDYAFVHFSNRE 55
Query: 139 VVDKIRGFAFIEFNDYDVVDKIV 161
+ A N + +
Sbjct: 56 DAVE----AMKALNGKVLDGSPI 74
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 36.9 bits (85), Expect = 1e-04
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 81 EANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 139
E + + ++VG L +D E + + FSQ G +S M+T + + F+EF ++
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRD 60
Query: 140 VDKIRGFAFIEFNDYDVVDKIV 161
A N ++ K V
Sbjct: 61 AAA----ALAAMNGRKILGKEV 78
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 36.6 bits (84), Expect = 1e-04
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
K+++G L DDLR+ F + + K G+AF+++ D
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRK------LPLAGQVLLKSGYAFVDYPD 46
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.6 bits (84), Expect = 1e-04
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
K+FVGGL D E L + FS++G I V +V ++ET RGF F+ F + D
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD---- 62
Query: 147 AFIEFNDYDVVDKIV 161
A + N V + +
Sbjct: 63 AMMAMNGKSVDGRQI 77
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 36.6 bits (84), Expect = 2e-04
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 86 VKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIR 144
V +F+ L K + L + FS FG I S +V ++ +G+ F+ F + ++
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAER-- 63
Query: 145 GFAFIEFNDYDVVDKIV 161
A + N + D+ V
Sbjct: 64 --AIEKMNGMLLNDRKV 78
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 36.5 bits (84), Expect = 2e-04
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 87 KKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
++V G D LR FS FG I ++M R AF+ + + D+
Sbjct: 6 NTLYVYGE-DMTPTLLRGAFSPFGNIIDLSM------DPPRNCAFVTYEKMESADQ---- 54
Query: 147 AFIEFNDYDVVDKIV 161
A E N V +
Sbjct: 55 AVAELNGTQVESVQL 69
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 36.7 bits (84), Expect = 2e-04
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 80 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFA 130
P+ ++ ++V GL DDL ++F Q G ++ +++ +KETG +G A
Sbjct: 2 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDA 61
Query: 131 FIEFNDYDVVDKIRGFAFIEFNDYDVVDKIV 161
+ + D A F+ D +
Sbjct: 62 TVSYEDPPTAKA----AVEWFDGKDFQGSKL 88
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 36.6 bits (84), Expect = 2e-04
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
+ + L + ED+L+E F I V+ G +G A+IEF +K
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQ-----DGKSKGIAYIEFKSEADAEK--- 68
Query: 146 FAFIEFNDYDVVDKIV 161
E ++ + V
Sbjct: 69 -NLEEKQGAEIDGRSV 83
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.9 bits (82), Expect = 4e-04
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 80 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P + +++ +FVG + + E+ L++ FS+ G + S +V ++ETG +G+ F E+ D +
Sbjct: 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61
Query: 139 VVDKIRGFAFIEFNDYDVVDKIV 161
A N + + +
Sbjct: 62 TALS----AMRNLNGREFSGRAL 80
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.4 bits (81), Expect = 5e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
+FVG D ED+LRE+FSQ+G + V + R FAF+ F D +
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS 57
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.9 bits (80), Expect = 7e-04
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
++FVG L D E+++R+ F ++G V + +K F FI + +
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEI---- 59
Query: 147 AFIEFNDYDVVDKIV 161
A +E ++ + K +
Sbjct: 60 AKVELDNMPLRGKQL 74
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 35.7 bits (81), Expect = 8e-04
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 54 EEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTI 112
+ AQ ++ + P PE + + + V + +E LR+ F ++G I
Sbjct: 15 QTAQLQQLQQQQQQHIPPTQ----MNPEPDVL-RNLMVNYIPTTVDEVQLRQLFERYGPI 69
Query: 113 ESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDVVDKIV 161
ESV +V ++ET RG+ F++F + A N +++++K +
Sbjct: 70 ESVKIVCDRETRQSRGYGFVKFQSGSSAQQ----AIAGLNGFNILNKRL 114
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 34.1 bits (78), Expect = 0.001
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 6/64 (9%)
Query: 90 FVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFI 149
V G + F+Q+G I M + I + K
Sbjct: 8 TVFGFPQASASYILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKALSKDGR 61
Query: 150 EFND 153
F +
Sbjct: 62 IFGE 65
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 34.7 bits (79), Expect = 0.001
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
++F+GG+ K ++ +++ E ++ I + K RGF
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLD---------------VIVYASAADKMKNRGF 47
Query: 147 AFIEFNDYDVVDKIVCKYN 165
AF+E+ + K
Sbjct: 48 AFVEYESHRAAAMARRKLM 66
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 34.7 bits (79), Expect = 0.001
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGF 146
+F+ L ++ + DL + F FG + S + +K+T + F F+ +++
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA---- 75
Query: 147 AFIEFNDYDVVDKIV 161
A N + + K +
Sbjct: 76 AIQSMNGFQIGMKRL 90
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 34.0 bits (77), Expect = 0.001
Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 88 KMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
+++ + ++R+ + + + R FA+I+ +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 58
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 34.4 bits (78), Expect = 0.002
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 65 EIPGPPHMDKLEIGKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKET 123
EI P G+P K +++ L E DL F++F + + T
Sbjct: 2 EIRKIPMFSSYNPGEPN-----KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT 56
Query: 124 GAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDVVDKIV 161
G RG AFI F + ++ + A N Y + KI+
Sbjct: 57 GRMRGQAFITFPNKEIAWQ----ALHLVNGYKLYGKIL 90
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 33.5 bits (76), Expect = 0.003
Identities = 16/83 (19%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 80 PEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 138
P+ + +FV + ++ +ED+++E F +G I+++++ ++ TG +G+A +E+ +
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 139 VVDKIRGFAFIEFNDYDVVDKIV 161
A N +++ + +
Sbjct: 61 QALA----AKEALNGAEIMGQTI 79
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 33.2 bits (75), Expect = 0.004
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 142
K +F+ L D EE+ L E QFG ++ V +V + +T +G AF +F + K
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 32.8 bits (74), Expect = 0.006
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 89 MFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFA 147
+ GGL + L + G ++++ M NK ++F + + + A
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKR----A 72
Query: 148 FIEFNDYDVVDK 159
++ N +VVD
Sbjct: 73 YVTLNGKEVVDD 84
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 31.9 bits (72), Expect = 0.008
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 87 KKMFVGGL-KDQEEDDLRE-YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIR 144
+++ L + ++D+L++ + F + + + RG AF+ F +
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN-- 61
Query: 145 GFAFIEFNDYDVVDKIV 161
A + DK +
Sbjct: 62 --ALRSMQGFPFYDKPM 76
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 32.1 bits (72), Expect = 0.009
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 78 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKR 127
G E F G L +DL FS G I+ ++ V + G
Sbjct: 3 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL 53
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 30.5 bits (68), Expect = 0.017
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 90 FVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAF 148
++ GL + DL + +G I S + +K T +G+ F++F+ K A
Sbjct: 2 YIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQK----AV 57
Query: 149 IEFNDYDV 156
V
Sbjct: 58 TALKASGV 65
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 30.8 bits (69), Expect = 0.019
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 11/61 (18%)
Query: 78 GKPEANATVKKMFVGGLKDQE--EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
G+ E V + + + L + FG I + ++ AFIE
Sbjct: 3 GRVETRRVV---HIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN------EAFIEMA 53
Query: 136 D 136
Sbjct: 54 T 54
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 31.0 bits (70), Expect = 0.020
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 21/67 (31%)
Query: 99 EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRGFAFIEFNDYDVVD 158
+DLR S+FG I + + G A + F D + D
Sbjct: 33 REDLRVECSKFGQIRKLLLFD---------------------RHPDGVASVSFRDPEEAD 71
Query: 159 KIVCKYN 165
+ +
Sbjct: 72 YCIQTLD 78
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.0 bits (69), Expect = 0.021
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 78 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
G A + + GL ++++ ++FS + + + G G AF++F
Sbjct: 7 GNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS 66
Query: 137 YDVVDKIRGFAFIEFNDYDV 156
++ +K +
Sbjct: 67 QEIAEKALKKHKERIGHRYI 86
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 29.5 bits (65), Expect = 0.057
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 85 TVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
T +F+G L ++ +L+ S+ V + TG R F +++F + ++K
Sbjct: 12 TPFNLFIGNLNPNKSVAELKVAISELFAKN-DLAVVDVRTGTNRKFGYVDFESAEDLEKA 70
Query: 144 RGFAFIEFND 153
++
Sbjct: 71 LELTGLKVFG 80
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 29.0 bits (64), Expect = 0.11
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 78 GKPEANATVKKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 136
G P + ++ V GL DL+++ + G + ++ + +E+
Sbjct: 7 GGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MGMVEYLR 59
Query: 137 YDVVDKIRGFAFIEFNDYDV 156
+ ++ A + +D
Sbjct: 60 KEDMEY----ALRKLDDTKF 75
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 28.5 bits (63), Expect = 0.13
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 87 KKMFVGGL-KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIRG 145
+ +++ G D DD++E+ G + ++ M A +G F+ F+ + K
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 146 FAFIEFND 153
++ +
Sbjct: 66 TPGQKYKE 73
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.6 bits (61), Expect = 0.30
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 78 GKPEANATVKKMF-VGGLKDQEE-----DDLREYFSQFGTIESVNMVTNKETGAK--RGF 129
G P + M L D EE +D+R+ S++G ++S+ + + G
Sbjct: 1 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 60
Query: 130 AFIEFNDYDVVDK 142
F+EF K
Sbjct: 61 IFVEFTSVFDCQK 73
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 27.8 bits (61), Expect = 0.32
Identities = 3/84 (3%), Positives = 13/84 (15%), Gaps = 29/84 (34%)
Query: 88 KMFVGGL------KDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVD 141
+ + + F + + +
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--------------------- 45
Query: 142 KIRGFAFIEFNDYDVVDKIVCKYN 165
I F++ + +
Sbjct: 46 --FKRVRINFSNPLSAADARLRLH 67
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 124
Score = 27.9 bits (61), Expect = 0.34
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 52 AMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQEEDDLREYFSQFG 110
A A EE + P K G +A KM K+ + ++ Y Q
Sbjct: 66 AKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKG---KMTFKLKKEADAHNIWAYLQQVA 121
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId:
34018]}
Length = 118
Score = 26.2 bits (57), Expect = 1.4
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 50 NKAMEEA---QSEEEVDMEIPGP----PHMDKLEIGKPEANATVKKMFVGGLKDQEEDDL 102
N A EA + E + +P P +A + KM +QE D+
Sbjct: 51 NHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGS-TKMVFKLPDEQERKDV 109
Query: 103 REYFSQF 109
Y QF
Sbjct: 110 VAYLKQF 116
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId:
1085]}
Length = 112
Score = 25.5 bits (55), Expect = 2.2
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 48 INNKAMEEAQSEEEVDMEIPGPPHMDKLEIGKPEANATVKKMFVGGLKDQEEDDLREY 105
KA +E + + P + G P+A + KM KD E +++ Y
Sbjct: 53 TEMKAKGLTWTEANLAAYVKNPKAFVLEKSGDPKAKS---KMTFKLTKDDEIENVIAY 107
>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum
sulfidophilum [TaxId: 35806]}
Length = 138
Score = 25.2 bits (54), Expect = 3.2
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 77 IGKPEANATVKKMFVGGLKDQEEDDLREY 105
G + ++ + + +D+ Y
Sbjct: 104 PGIAFTSKPIEGEIRPLMTAGQIEDVVAY 132
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna
(Thunnus thynnus) [TaxId: 8237]}
Length = 103
Score = 24.8 bits (53), Expect = 3.2
Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 21 FESKCPS-HEVRLAVEAGVLEVVTTRPTINNKAMEEAQ-SEEEVDMEIPGPPHMDKLEIG 78
F KC H V + V + E ++ I +
Sbjct: 10 FVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLE 69
Query: 79 KPEANATVKKM-FVGGLKDQEEDDLREYFSQFGT 111
P+ KM F G K E DL Y +
Sbjct: 70 NPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 24.8 bits (53), Expect = 4.0
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 101 DLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 143
+ ++F + +E + G G F+EF +
Sbjct: 34 HVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA 76
>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId:
1071]}
Length = 105
Score = 24.3 bits (52), Expect = 5.5
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 21 FESKCPS-HEVRLAVEAGVLEVVTTRPTINNKAMEEAQSEEEVDMEIPGPPHMDKLEIGK 79
F + C + H + + SE + I P + I
Sbjct: 14 FHTICITCHTDIKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEH 73
Query: 80 PEANATVKKM-FVGGLKDQEEDDLREY 105
P+ KM + G Q+ D+ Y
Sbjct: 74 PQKIVPGTKMGYPGQPDPQKRADIIAY 100
>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris
[TaxId: 1076]}
Length = 114
Score = 24.4 bits (52), Expect = 5.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 59 EEEVDMEIPGPPHMDK---LEIGKPEANATVKKMFVGGLKDQEEDDLREY 105
+ + + P K E GK + V KM +Q+ D+ Y
Sbjct: 60 ADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFKLANEQQRKDVVAY 109
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory
sulfite reductase {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 111
Score = 23.9 bits (52), Expect = 6.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 102 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 135
LREY+ FGT + MVT KETG + F
Sbjct: 59 LREYWETFGTCPPIKMVT-KETGFSLEKIYQLFP 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.395
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 662,978
Number of extensions: 30304
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 84
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)