RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4001
(925 letters)
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 577 bits (1488), Expect = 0.0
Identities = 254/386 (65%), Positives = 289/386 (74%), Gaps = 27/386 (6%)
Query: 531 HLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKC----VGAFGEVTLVRKI--DTN 584
+KTI +G FGEV LVRK+DTN LY MKT+ K V R I + +
Sbjct: 2 MFVKIKTI--GIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEAD 59
Query: 585 HLYVMK----GSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHK 640
+ +V+K +NLYFVMDYIPGGD+MSLLI+ GIFEE LARFYIAELTCA+ESVHK
Sbjct: 60 NEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHK 119
Query: 641 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWS 700
MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTH+SKYYQ GDH RQDSMEPSEEWS
Sbjct: 120 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQK-GDHHRQDSMEPSEEWS 178
Query: 701 QGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV 760
+ LKPLERRR+R+HQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV
Sbjct: 179 EIDR--------CRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV 230
Query: 761 GVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRL 820
GVILYEMLVG PPFLA+T AETQ KVINWE+ LHIP++A+LS E +DLIL+LC GA+ RL
Sbjct: 231 GVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLCCGAEDRL 290
Query: 821 GKN-ASEVKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNSDSMLDE 879
GKN A E+KAHPFF +DF +R P+IP+I + DTSNFDPVDP+KLR+ DS
Sbjct: 291 GKNGADEIKAHPFFKGIDFASLIRRQKAPYIPKITHPTDTSNFDPVDPEKLRSDDSGESS 350
Query: 880 LSDELKS-----PFHGFFEFTFRRFF 900
+K H F+EFTFRRFF
Sbjct: 351 PDRNVKPNNRKRTEHAFYEFTFRRFF 376
Score = 150 bits (380), Expect = 2e-39
Identities = 60/66 (90%), Positives = 62/66 (93%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+R +DTN LYAMKTLRKADVL RNQ AHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV
Sbjct: 20 VRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 79
Query: 139 MDYIPG 144
MDYIPG
Sbjct: 80 MDYIPG 85
Score = 98.3 bits (245), Expect = 7e-22
Identities = 39/43 (90%), Positives = 39/43 (90%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGD 43
MKTLRKADVL RNQ AHVKAERDILAEADNEWVVKLYYSFQ
Sbjct: 31 MKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDK 73
Score = 72.5 bits (178), Expect = 2e-13
Identities = 28/36 (77%), Positives = 32/36 (88%)
Query: 451 SMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
SMF+KIK IG+GAFGEV LVRK+DTN LYAMKT+ K
Sbjct: 1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRK 36
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 513 bits (1322), Expect = e-175
Identities = 248/377 (65%), Positives = 282/377 (74%), Gaps = 23/377 (6%)
Query: 542 VGVFGEVTLVRKIDTNHLYVMKTIYK----CVGAFGEVTLVRKI--DTNHLYVMK----G 591
+G FGEV L RK+DT LY MKT+ K V R I + ++ +V++
Sbjct: 11 IGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSF 70
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+NLYFVMDYIPGGD+MSLLI+ GIF E LARFYIAELTCAVESVHKMGFIHRDIKPD
Sbjct: 71 QDKDNLYFVMDYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPD 130
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
NILIDRDGHIKLTDFGLCTGFRWTH+SKYYQS GDH RQDSM+ S EW G P CRC
Sbjct: 131 NILIDRDGHIKLTDFGLCTGFRWTHDSKYYQS-GDHVRQDSMDFSNEW--GDP-ANCRC- 185
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
LKPLERR R+HQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG
Sbjct: 186 GDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQ 245
Query: 772 PPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKN-ASEVKAH 830
PPFLA T ETQ KVINW++ LHIP +A+LSPE +DLI++LC G + RLGKN A E+KAH
Sbjct: 246 PPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLCRGPEDRLGKNGADEIKAH 305
Query: 831 PFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNSDSMLDELSDEL------ 884
PFF +DF +R + P+IP+I + DTSNFDPVDPDKL + D ++D L
Sbjct: 306 PFFKTIDFSSDLRQQSAPYIPKITHPTDTSNFDPVDPDKLWSDDDKEGNVNDTLNGWYKN 365
Query: 885 -KSPFHGFFEFTFRRFF 900
K P H F+EFTFRRFF
Sbjct: 366 GKHPEHAFYEFTFRRFF 382
Score = 130 bits (329), Expect = 9e-33
Identities = 58/65 (89%), Positives = 60/65 (92%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 139
R +DT LYAMKTLRK DVL RNQVAHVKAERDILAEADNEWVV+LYYSFQDKDNLYFVM
Sbjct: 21 RKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM 80
Query: 140 DYIPG 144
DYIPG
Sbjct: 81 DYIPG 85
Score = 84.7 bits (209), Expect = 2e-17
Identities = 38/41 (92%), Positives = 39/41 (95%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MKTLRK DVL RNQVAHVKAERDILAEADNEWVV+LYYSFQ
Sbjct: 31 MKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQ 71
Score = 58.1 bits (140), Expect = 9e-09
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 451 SMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
SMF+KIK +G+GAFGEV L RK+DT LYAMKT+ K
Sbjct: 1 SMFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRK 36
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 482 bits (1243), Expect = e-163
Identities = 234/376 (62%), Positives = 271/376 (72%), Gaps = 22/376 (5%)
Query: 542 VGVFGEVTLVRKIDTNHLYVMKTIYK----CVGAFGEVTLVRKI--DTNHLYVMK----G 591
+G FGEV L K+DT+ LY MKT+ K V R I + ++ +V+K
Sbjct: 11 IGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSF 70
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+NLYFVMDYIPGGD+MSLLI+ +F E LARFYIAELT A+ESVHKMGFIHRDIKPD
Sbjct: 71 QDKDNLYFVMDYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPD 130
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
NILID DGHIKLTDFGLCTGFRWTHNSKYYQ G H RQDSMEPS+ W + CRC
Sbjct: 131 NILIDLDGHIKLTDFGLCTGFRWTHNSKYYQ-KGSHIRQDSMEPSDLWDDVS---NCRC- 185
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
LK LE+R ++HQRCLAHSLVGTPNYIAPEVLLR GYTQLCDWWSVGVIL+EMLVG
Sbjct: 186 GDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQ 245
Query: 772 PPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKN-ASEVKAH 830
PPFLA T ETQ KVINWE+ LHIP + +LSPE DLI +LC A++RLG+N A ++KAH
Sbjct: 246 PPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAH 305
Query: 831 PFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNSDS-----MLDEL-SDEL 884
PFFS VDF +RT P++P+I + MDTSNFDPV+ + N S D L S
Sbjct: 306 PFFSEVDFSSDIRTQPAPYVPKISHPMDTSNFDPVEEESPWNDASGDSTRTWDTLCSPNG 365
Query: 885 KSPFHGFFEFTFRRFF 900
K P H F+EFTFRRFF
Sbjct: 366 KHPEHAFYEFTFRRFF 381
Score = 129 bits (326), Expect = 2e-32
Identities = 58/65 (89%), Positives = 60/65 (92%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 139
+DT+ LYAMKTLRK DVL RNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM
Sbjct: 21 CKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 80
Query: 140 DYIPG 144
DYIPG
Sbjct: 81 DYIPG 85
Score = 87.0 bits (215), Expect = 5e-18
Identities = 39/41 (95%), Positives = 39/41 (95%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MKTLRK DVL RNQVAHVKAERDILAEADNEWVVKLYYSFQ
Sbjct: 31 MKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQ 71
Score = 57.3 bits (138), Expect = 2e-08
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 451 SMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
SMF+KIK +G+GAFGEV L K+DT+ LYAMKT+ K
Sbjct: 1 SMFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRK 36
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 408 bits (1051), Expect = e-135
Identities = 165/388 (42%), Positives = 212/388 (54%), Gaps = 55/388 (14%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGV-FGEVTLVR-----KIDTNHLYVMKTIYKCV 569
GAFGEV LVR DT +Y MK + K + ++ VR D + +++K Y
Sbjct: 12 GAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYY--- 68
Query: 570 GAFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIA 629
+F D H LY VM+Y+PGGDLM+LLI+K +F E ARFYIA
Sbjct: 69 -SFQ--------DEEH-----------LYLVMEYMPGGDLMNLLIRKDVFPEETARFYIA 108
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR 689
EL A++SVHK+GFIHRDIKPDNILID DGHIKL DFGLC + +YY N H
Sbjct: 109 ELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYL-NDSHNL 167
Query: 690 QDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT 749
L RRR + +R A+S VGTP+YIAPEVL T
Sbjct: 168 LF----------------------RDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGT 205
Query: 750 GYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLI 809
Y CDWWS+GVILYEML G PPF ++T ET K+INW+ L P + +SPE DLI
Sbjct: 206 PYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPEAIDLI 265
Query: 810 LQLCTGADKRLGKNASEVKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDK 869
+L + RLG + E+K+HPFF +D+E +R PP +P + + +DTSNFD + DK
Sbjct: 266 CRLLCDPEDRLG-SFEEIKSHPFFKGIDWEN-LRETKPPFVPELSSPLDTSNFDDFEDDK 323
Query: 870 LRNSDSMLDELSDELKSPFHGFFEFTFR 897
SD + K F FT++
Sbjct: 324 DL-SDYLSQNSKKLNKGKQLAFVGFTYK 350
Score = 124 bits (314), Expect = 5e-31
Identities = 45/70 (64%), Positives = 60/70 (85%), Gaps = 3/70 (4%)
Query: 78 EIRL---IDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDN 134
E+ L DT +YAMK LRK+D++KRNQ+AHV+AERDILA+AD+ W+VKLYYSFQD+++
Sbjct: 16 EVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEH 75
Query: 135 LYFVMDYIPG 144
LY VM+Y+PG
Sbjct: 76 LYLVMEYMPG 85
Score = 85.0 bits (211), Expect = 1e-17
Identities = 36/58 (62%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFI-LVGLWVNTMEY 57
MK LRK+D++KRNQ+AHV+AERDILA+AD+ W+VKLYYSFQ + + LV MEY
Sbjct: 31 MKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLV------MEY 82
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 375 bits (964), Expect = e-122
Identities = 163/381 (42%), Positives = 222/381 (58%), Gaps = 53/381 (13%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC----VGAFGEVTLVRKI--DTNHLYVMK----GS 592
G FGEV LV+K DT H+Y MK + K V R I + ++ +V+K
Sbjct: 12 GAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQ 71
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
N LY +M+Y+PGGD+M+LL+KK F E RFYIAE A++S+HK+G+IHRDIKPDN
Sbjct: 72 DENYLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDN 131
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+L+D GHIKL+DFGLCTG + +H +++Y+ S P ++
Sbjct: 132 LLLDAKGHIKLSDFGLCTGLKKSHRTEFYR---------------ILSHALPSNF---LD 173
Query: 713 SPLKPLERRRRRE----HQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 768
KP+ +R+ E ++R LA+S VGTP+YIAPEV L+TGY + CDWWS+GVI+YEML
Sbjct: 174 FISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEML 233
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKN-ASEV 827
VG PPF ++ ET K+INW+ L P E LSPE DLI +LC A++RLG N +E+
Sbjct: 234 VGYPPFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCCEAERRLGNNGVNEI 293
Query: 828 KAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFD---------PVDPDKLRNSDSMLD 878
K+HPFF VD+E +R P IP +++ DTSNFD P P R D
Sbjct: 294 KSHPFFKGVDWEH-IRERPAPIIPELKSITDTSNFDDFEEIDLDVPTSPGPPRGKIKSKD 352
Query: 879 ELSDELKSPFHGFFEFTFRRF 899
F +T++RF
Sbjct: 353 ----------LAFIGYTYKRF 363
Score = 131 bits (332), Expect = 3e-33
Identities = 47/70 (67%), Positives = 61/70 (87%), Gaps = 3/70 (4%)
Query: 78 EIRLI---DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDN 134
E+RL+ DT H+YAMK LRK+++L++ QVAHV+AERDILAEADN WVVKLYYSFQD++
Sbjct: 16 EVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENY 75
Query: 135 LYFVMDYIPG 144
LY +M+Y+PG
Sbjct: 76 LYLIMEYLPG 85
Score = 90.1 bits (224), Expect = 3e-19
Identities = 36/58 (62%), Positives = 46/58 (79%), Gaps = 7/58 (12%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFI-LVGLWVNTMEY 57
MK LRK+++L++ QVAHV+AERDILAEADN WVVKLYYSFQ + ++ L+ MEY
Sbjct: 31 MKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLI------MEY 82
Score = 57.4 bits (139), Expect = 1e-08
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKC 487
F IK IG GAFGEV LV+K DT H+YAMK + K
Sbjct: 3 FESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKS 37
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This group is
composed of fungal NDR-like proteins including
Saccharomyces cerevisiae CBK1 (or CBK1p),
Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago
maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like
NDR kinase, group members contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. CBK1 is an essential component in the RAM
(regulation of Ace2p activity and cellular
morphogenesis) network. CBK1 and Orb6 play similar roles
in coordinating cell morphology with cell cycle
progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 315 bits (809), Expect = 2e-99
Identities = 151/389 (38%), Positives = 221/389 (56%), Gaps = 32/389 (8%)
Query: 530 NHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVM 589
+ +K I K G FGEV LV+K DT +Y MKT+ K F + L +
Sbjct: 1 EDFHTVKVIGK--GAFGEVRLVQKKDTGKIYAMKTLLK-SEMFKKDQLAHVKAERDVLAE 57
Query: 590 KGSP-----------HNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESV 638
SP LY +M+++PGGDLM++LIK F E + RFY+AE A+E+V
Sbjct: 58 SDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAV 117
Query: 639 HKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEE 698
HK+GFIHRDIKPDNILIDR GHIKL+DFGL TGF H+S YYQ + +
Sbjct: 118 HKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQ---------KLLQGKS 168
Query: 699 WSQGTPGQECRCINSPLKPLERRRR----REHQRCLAHSLVGTPNYIAPEVLLRTGYTQL 754
+ ++S + + + ++++R +A+S VGTP+YIAPE+ L+ GY Q
Sbjct: 169 NKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQE 228
Query: 755 CDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCT 814
CDWWS+G I++E L+G PPF + S ET K+INW L+ P + LS E DLI +L T
Sbjct: 229 CDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT 288
Query: 815 GADKRLGKN-ASEVKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNS 873
A+ RLG+ A E+K+HPFF VD++ +R + P IP++++ DTS F + +++ +
Sbjct: 289 NAENRLGRGGAHEIKSHPFFRGVDWDT-IRQIRAPFIPQLKSITDTSYFPTDELEQVPEA 347
Query: 874 DSMLDELSDELKSPFH---GFFEFTFRRF 899
++ + + F +T++RF
Sbjct: 348 PALKQAAPAQQEESVELDLAFIGYTYKRF 376
Score = 105 bits (263), Expect = 4e-24
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 78 EIRLI---DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDN 134
E+RL+ DT +YAMKTL K+++ K++Q+AHVKAERD+LAE+D+ WVV LYYSFQD
Sbjct: 16 EVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQY 75
Query: 135 LYFVMDYIPGEKLI 148
LY +M+++PG L+
Sbjct: 76 LYLIMEFLPGGDLM 89
Score = 76.0 bits (187), Expect = 1e-14
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFI 46
MKTL K+++ K++Q+AHVKAERD+LAE+D+ WVV LYYSFQ ++
Sbjct: 31 MKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYL 76
Score = 49.9 bits (119), Expect = 4e-06
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F +K IG GAFGEV LV+K DT +YAMKT+ K
Sbjct: 3 FHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLK 36
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 278 bits (711), Expect = 2e-85
Identities = 158/370 (42%), Positives = 222/370 (60%), Gaps = 32/370 (8%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC----VGAFGEVTLVRKI--DTNHLYVMKG----S 592
G FGEV LV+K DT H+Y MK + K G + R I + + L+V+K
Sbjct: 12 GAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQ 71
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
NLY +M+++PGGD+M+LL+KK E +FYIAE A++S+H++GFIHRDIKPDN
Sbjct: 72 DKLNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDN 131
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+L+D GH+KL+DFGLCTG + H +++Y+ N +H PS+ Q +N
Sbjct: 132 LLLDSKGHVKLSDFGLCTGLKKAHRTEFYR-NLNHSL-----PSDFTFQN--------MN 177
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSP 772
S K +R R R LA S VGTP+YIAPEV ++TGY +LCDWWS+GVI+YEML+G P
Sbjct: 178 SKRKAETWKRNR---RQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYP 234
Query: 773 PFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGK-NASEVKAHP 831
PF + T ET KV+NW+ L P E +S + DLIL+ C + R+G E+K +P
Sbjct: 235 PFCSETPQETYKKVMNWKETLIFPPEVPISEKAKDLILRFCCEWEHRIGAPGVEEIKTNP 294
Query: 832 FFSNVDFEKGVRTLTPPHIP-RIQNSMDTSNFDPV-DPDKLRNSDSMLDELSDELKSPFH 889
FF VD+E +R P IP I++ DTSNFD D D L+ + + + + K+
Sbjct: 295 FFEGVDWEH-IRE-RPAAIPIEIKSIDDTSNFDEFPDSDILKPTVATSNHPETDYKNKDW 352
Query: 890 GFFEFTFRRF 899
F +T++RF
Sbjct: 353 VFINYTYKRF 362
Score = 102 bits (255), Expect = 2e-23
Identities = 44/74 (59%), Positives = 61/74 (82%), Gaps = 3/74 (4%)
Query: 78 EIRLI---DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDN 134
E+RL+ DT H+YAMK LRKAD+L++ QV H++AERDIL EAD+ WVVK++YSFQDK N
Sbjct: 16 EVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLN 75
Query: 135 LYFVMDYIPGEKLI 148
LY +M+++PG ++
Sbjct: 76 LYLIMEFLPGGDMM 89
Score = 67.0 bits (163), Expect = 1e-11
Identities = 28/41 (68%), Positives = 36/41 (87%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK LRKAD+L++ QV H++AERDIL EAD+ WVVK++YSFQ
Sbjct: 31 MKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQ 71
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 278 bits (711), Expect = 2e-85
Identities = 147/333 (44%), Positives = 208/333 (62%), Gaps = 31/333 (9%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGE-VTLVRK-----IDTNHLYVMKG----S 592
G FGEV LV+K DT H+Y MK + K E V +R ++ + +V+K
Sbjct: 12 GAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQ 71
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
NLY +M+++PGGD+M+LL+KK E +FYIAE A++++H++GFIHRDIKPDN
Sbjct: 72 DKRNLYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDN 131
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+L+D GH+KL+DFGLCTG + H +++Y R + P ++S + +N
Sbjct: 132 LLLDAKGHVKLSDFGLCTGLKKAHRTEFY-------RNLTHNPPSDFS-------FQNMN 177
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSP 772
S K ++ R R LA+S VGTP+YIAPEV ++TGY +LCDWWS+GVI+YEML+G P
Sbjct: 178 SKRKAETWKKNR---RQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYP 234
Query: 773 PFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNA-SEVKAHP 831
PF + T ET KV+NW+ L P E +S + DLIL+ CT ++ R+G N E+K+HP
Sbjct: 235 PFCSETPQETYRKVMNWKETLVFPPEVPISEKAKDLILRFCTDSENRIGSNGVEEIKSHP 294
Query: 832 FFSNVDFEKGVRTLTPPHIP-RIQNSMDTSNFD 863
FF VD+ +R P IP I++ DTSNFD
Sbjct: 295 FFEGVDWGH-IRE-RPAAIPIEIKSIDDTSNFD 325
Score = 106 bits (265), Expect = 1e-24
Identities = 45/70 (64%), Positives = 59/70 (84%), Gaps = 3/70 (4%)
Query: 78 EIRLI---DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDN 134
E+RL+ DT H+YAMK LRKAD+L++ QVAH++AERDIL EAD WVVK++YSFQDK N
Sbjct: 16 EVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRN 75
Query: 135 LYFVMDYIPG 144
LY +M+++PG
Sbjct: 76 LYLIMEFLPG 85
Score = 69.7 bits (170), Expect = 2e-12
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK LRKAD+L++ QVAH++AERDIL EAD WVVK++YSFQ
Sbjct: 31 MKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQ 71
Score = 44.6 bits (105), Expect = 2e-04
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F +K IG GAFGEV LV+K DT H+YAMK + K
Sbjct: 3 FESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRK 36
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 264 bits (678), Expect = 4e-82
Identities = 123/328 (37%), Positives = 153/328 (46%), Gaps = 91/328 (27%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCV--------GVFGEVTLVRKIDTNHLYVMKTIYK 567
G+FG+V LVRK DT LY MK + K E ++ +I NH +++K Y
Sbjct: 4 GSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRI--NHPFIVKLHY- 60
Query: 568 CVGAFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFY 627
AF LY V++Y PGG+L S L K+G F E ARFY
Sbjct: 61 ---AF--------QTEEKLY-----------LVLEYAPGGELFSHLSKEGRFSEERARFY 98
Query: 628 IAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDH 687
AE+ A+E +H +G I+RD+KP+NIL+D DGHIKLTDFGL
Sbjct: 99 AAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLA------------------ 140
Query: 688 GRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL 747
K L E R ++ GTP Y+APEVLL
Sbjct: 141 ----------------------------KELS----SEGSRT--NTFCGTPEYLAPEVLL 166
Query: 748 RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGAD 807
GY + DWWS+GV+LYEML G PPF A E K++ L P LSPE D
Sbjct: 167 GKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDP--LRFP--EFLSPEARD 222
Query: 808 LILQLCT-GADKRLGKN-ASEVKAHPFF 833
LI L KRLG A E+KAHPFF
Sbjct: 223 LISGLLQKDPTKRLGSGGAEEIKAHPFF 250
Score = 106 bits (268), Expect = 1e-25
Identities = 31/68 (45%), Positives = 48/68 (70%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 139
R DT LYAMK L+K ++KR +V H ER+IL+ ++ ++VKL+Y+FQ ++ LY V+
Sbjct: 13 RKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVL 72
Query: 140 DYIPGEKL 147
+Y PG +L
Sbjct: 73 EYAPGGEL 80
Score = 64.8 bits (159), Expect = 2e-11
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK L+K ++KR +V H ER+IL+ ++ ++VKL+Y+FQ
Sbjct: 23 MKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQ 63
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 244 bits (625), Expect = 2e-74
Identities = 120/329 (36%), Positives = 156/329 (47%), Gaps = 75/329 (22%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIY-KCVGAFGE 574
GA+G V L +K T +Y +K I K ++RK + + + I + +
Sbjct: 4 GAYGRVFLAKKKSTGDIYAIKVIKKAD-------MIRKNQVDQVLTERDILSQAQSPY-V 55
Query: 575 VTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCA 634
V L NLY VM+Y+PGGDL SLL G +E +AR YIAE+ A
Sbjct: 56 VKLYYSFQGKK----------NLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLA 105
Query: 635 VESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSME 694
+E +H G IHRD+KPDNILID +GH+KLTDFGL SK
Sbjct: 106 LEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGL---------SKV-------------- 142
Query: 695 PSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQL 754
G R IN E +R +VGTP+YIAPEV+L G+++
Sbjct: 143 ----------GLVRRQINLNDDEKEDKR-----------IVGTPDYIAPEVILGQGHSKT 181
Query: 755 CDWWSVGVILYEMLVGSPPFLANTSAET----QYKVINWESCLHIPAEAQLSPEGADLIL 810
DWWS+G ILYE LVG PPF T E I W + + EA DLI
Sbjct: 182 VDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAI------DLIS 235
Query: 811 QL-CTGADKRLG-KNASEVKAHPFFSNVD 837
+L +KRLG K+ E+K HPFF +D
Sbjct: 236 KLLVPDPEKRLGAKSIEEIKNHPFFKGID 264
Score = 93.5 bits (233), Expect = 5e-21
Identities = 35/61 (57%), Positives = 49/61 (80%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T +YA+K ++KAD++++NQV V ERDIL++A + +VVKLYYSFQ K NLY VM+Y+P
Sbjct: 17 TGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLP 76
Query: 144 G 144
G
Sbjct: 77 G 77
Score = 61.5 bits (150), Expect = 3e-10
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 7/58 (12%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFI-LVGLWVNTMEY 57
+K ++KAD++++NQV V ERDIL++A + +VVKLYYSFQG + LV MEY
Sbjct: 23 IKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLV------MEY 74
Score = 42.2 bits (100), Expect = 6e-04
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFGEVTLVRKIDTNHLYVMKTIY-KCVGA 517
I GA+G V L +K T +YA+K I K ++RK + + + I +
Sbjct: 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKAD-------MIRKNQVDQVLTERDILSQAQSP 53
Query: 518 FGEVTLVRKIDT-NHLY-VM--------KTIYKCVGVFGE 547
+ V L +LY VM ++ + VG E
Sbjct: 54 Y-VVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVGSLDE 92
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 238 bits (611), Expect = 2e-72
Identities = 102/302 (33%), Positives = 136/302 (45%), Gaps = 68/302 (22%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK------CVGAFGEVTLVRKIDTNHLYVMK--GS-- 592
G FG+V L R T L +K I K E+ +++K+ H +++
Sbjct: 10 GSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLK--HPNIVRLYDVFE 67
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
+ LY VM+Y GGDL LL K+G E ARFY+ ++ A+E +H G +HRD+KP+N
Sbjct: 68 DEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKGIVHRDLKPEN 127
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
IL+D DGH+KL DFGL
Sbjct: 128 ILLDEDGHVKLADFGLA------------------------------------------- 144
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSP 772
R+ + VGTP Y+APEVLL GY + D WS+GVILYE+L G P
Sbjct: 145 ----------RQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKP 194
Query: 773 PFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQ-LCTGADKRLGKNASEVKAHP 831
PF + +K I P E +SPE DLI + L +KRL A E HP
Sbjct: 195 PFPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKRLT--AEEALQHP 252
Query: 832 FF 833
FF
Sbjct: 253 FF 254
Score = 73.7 bits (182), Expect = 2e-14
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 139
R T L A+K ++K + K + E IL + + +V+LY F+D+D LY VM
Sbjct: 19 RDKKTGKLVAIKVIKKKKIKK--DRERILREIKILKKLKHPNIVRLYDVFEDEDKLYLVM 76
Query: 140 DYIPG 144
+Y G
Sbjct: 77 EYCEG 81
Score = 42.9 bits (102), Expect = 4e-04
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFI-LVGLWVNTMEYA 58
+K ++K + K + E IL + + +V+LY F+ + + LV MEY
Sbjct: 29 IKVIKKKKIKK--DRERILREIKILKKLKHPNIVRLYDVFEDEDKLYLV------MEYC 79
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 238 bits (608), Expect = 4e-71
Identities = 137/390 (35%), Positives = 192/390 (49%), Gaps = 91/390 (23%)
Query: 534 VMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKC-------VGAFGEVTLV-----RKI 581
++K I + G FGEV +V+ +T +Y MK + K F E V R+
Sbjct: 5 ILKVIGR--GAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRW 62
Query: 582 DTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFE----EPLARFYIAELTCAVES 637
TN Y + NNLY VMDY GGDL++LL K FE E +ARFY+AE+ A++S
Sbjct: 63 ITNLHYAFQDE--NNLYLVMDYYVGGDLLTLLSK---FEDRLPEDMARFYLAEMVLAIDS 117
Query: 638 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSE 697
VH++G++HRDIKPDN+L+D++GHI+L DFG C + D Q ++
Sbjct: 118 VHQLGYVHRDIKPDNVLLDKNGHIRLADFGSC-----------LRLLADGTVQSNV---- 162
Query: 698 EWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG-----YT 752
+ GTP +YI+PE+L Y
Sbjct: 163 --AVGTP----------------------------------DYISPEILQAMEDGKGRYG 186
Query: 753 QLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGA-DLILQ 811
CDWWS+GV +YEML G PF A + ET K++N + P + E A DLI +
Sbjct: 187 PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRR 246
Query: 812 LCTGADKRLGKN-ASEVKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKL 870
L + RLG+N + K HPFF +D++ +R T P++P + + DTSNFD VD D L
Sbjct: 247 LICSPETRLGRNGLQDFKDHPFFEGIDWD-NIRNSTAPYVPEVSSPTDTSNFD-VDDDDL 304
Query: 871 RNSDSMLDELSDELKSPFHG----FFEFTF 896
RN++S L F G F FT+
Sbjct: 305 RNTES----LPPSSHGAFSGNHLPFVGFTY 330
Score = 84.1 bits (208), Expect = 2e-17
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+++ +T +YAMK L K ++LKR + A + ERD+L D W+ L+Y+FQD++NLY V
Sbjct: 20 VKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLV 79
Query: 139 MDYIPGEKLI 148
MDY G L+
Sbjct: 80 MDYYVGGDLL 89
Score = 52.1 bits (125), Expect = 7e-07
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFILVGLWVNTMEY 57
MK L K ++LKR + A + ERD+L D W+ L+Y+FQ + + + M+Y
Sbjct: 31 MKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYL-----VMDY 82
Score = 42.5 bits (100), Expect = 7e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F +K IG GAFGEV +V+ +T +YAMK + K
Sbjct: 3 FEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNK 36
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 236 bits (604), Expect = 2e-70
Identities = 135/377 (35%), Positives = 183/377 (48%), Gaps = 87/377 (23%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCV-GAFGEVTLV---RKI--------DTNHLYVMK 590
G FGEV +VR+ T +Y MK + K V A V+ R I Y +
Sbjct: 12 GHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQ 71
Query: 591 GSPHNNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
+NLY VM+Y PGGDL+SLL + + F+E +A+FY+AEL A+ SVH+MG++HRDIK
Sbjct: 72 DK--DNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIK 129
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P+N+LIDR GHIKL DFG + R T N S P GTP
Sbjct: 130 PENVLIDRTGHIKLADFG--SAARLTANKMVN----------SKLPV-----GTP----- 167
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL------RTGYTQLCDWWSVGVI 763
+YIAPEVL + Y CDWWS+GVI
Sbjct: 168 -----------------------------DYIAPEVLTTMNGDGKGTYGVECDWWSLGVI 198
Query: 764 LYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKN 823
YEM+ G PF TSA+T ++N++ L P + ++S + DLI L G +RLG
Sbjct: 199 AYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLCGQKERLGYE 258
Query: 824 ASEVKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNSDSMLDELSDE 883
+ HPFFS +D+ +R PP +P +++ DTSNFD + +NS + +
Sbjct: 259 G--LCCHPFFSKIDWNN-IRNSLPPFVPTLKSDDDTSNFD----EPEKNSTRRSQSSTTQ 311
Query: 884 LKS--------PFHGFF 892
LK PF GF
Sbjct: 312 LKPNGFSGKDLPFVGFS 328
Score = 85.3 bits (211), Expect = 9e-18
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T +YAMK ++K+ +L + V+ + ERDIL+ +++ W+ +L Y+FQDKDNLY VM+Y P
Sbjct: 25 TGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQP 84
Query: 144 GEKLI 148
G L+
Sbjct: 85 GGDLL 89
Score = 49.0 bits (117), Expect = 7e-06
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK ++K+ +L + V+ + ERDIL+ +++ W+ +L Y+FQ
Sbjct: 31 MKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQ 71
Score = 37.5 bits (87), Expect = 0.023
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYKCV 488
+G G FGEV +VR+ T +YAMK + K V
Sbjct: 9 VGRGHFGEVQVVREKATGDIYAMKVMKKSV 38
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 230 bits (588), Expect = 1e-68
Identities = 112/337 (33%), Positives = 172/337 (51%), Gaps = 76/337 (22%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC-VGAFGEVTLV---RKI--DTNHLYV--MKGSPH 594
G FG V LVR + Y +K + K + +V V ++I H ++ + GS
Sbjct: 12 GSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQ 71
Query: 595 --NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
+NLY VM+Y+PGG+L S L K G F EP+ARFY A++ A+E +H + ++RD+KP+N
Sbjct: 72 DDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPEN 131
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+L+D DG+IK+TDF GF +K +
Sbjct: 132 LLLDSDGYIKITDF----GF-----AKRVKGR---------------------------- 154
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSP 772
++L GTP Y+APE++L GY + DWW++G+++YEML G P
Sbjct: 155 ------------------TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYP 196
Query: 773 PFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGAD--KRLG--KN-ASEV 827
PF + + K++ E + P+ SP+ DLI L D KRLG KN +++
Sbjct: 197 PFFDDNPIQIYEKIL--EGKVRFPSF--FSPDAKDLIRNLLQ-VDLTKRLGNLKNGVNDI 251
Query: 828 KAHPFFSNVDFEKGV-RTLTPPHIPRIQNSMDTSNFD 863
K HP+F+ +D+ + R + P IP+++ DTSNFD
Sbjct: 252 KNHPWFAGIDWIALLQRKIEAPFIPKVKGPGDTSNFD 288
Score = 130 bits (329), Expect = 2e-33
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 31/161 (19%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKID--TNHLYVMKTIY-----KC 568
G+FG V LVR + Y +K + K ++ +++++ N ++++I
Sbjct: 12 GSFGRVMLVRHKGSGKYYALKILSKA-----KIVKLKQVEHVLNEKRILQSIRHPFLVNL 66
Query: 569 VGAFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYI 628
G+F + + NLY VM+Y+PGG+L S L K G F EP+ARFY
Sbjct: 67 YGSFQDDS-------------------NLYLVMEYVPGGELFSHLRKSGRFPEPVARFYA 107
Query: 629 AELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC 669
A++ A+E +H + ++RD+KP+N+L+D DG+IK+TDFG
Sbjct: 108 AQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFA 148
Score = 91.1 bits (227), Expect = 5e-20
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+R + YA+K L KA ++K QV HV E+ IL + ++V LY SFQD NLY V
Sbjct: 20 VRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLV 79
Query: 139 MDYIPG 144
M+Y+PG
Sbjct: 80 MEYVPG 85
Score = 53.3 bits (129), Expect = 2e-07
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGD--IFILVGLWVNTMEY 57
+K L KA ++K QV HV E+ IL + ++V LY SFQ D ++++ MEY
Sbjct: 31 LKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLV-------MEY 82
Score = 41.0 bits (97), Expect = 0.002
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKC 487
F IK +G G+FG V LVR + YA+K + K
Sbjct: 3 FEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKA 37
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 214 bits (546), Expect = 7e-62
Identities = 134/431 (31%), Positives = 200/431 (46%), Gaps = 78/431 (18%)
Query: 469 LVRKIDTNHLYAMKTI------YKCVGAFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVT 522
LV D L K I Y+ A ++T +R + V+K I + GAFGEV
Sbjct: 6 LVYDCDIPALRKNKNIDNFLSRYE--KAAEKITKLR-MKAEDFDVIKVIGR--GAFGEVQ 60
Query: 523 LVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKID 582
LVR + +Y MK + K ++++ D+ + + I A + ++
Sbjct: 61 LVRHKSSKQVYAMKLLSK-------FEMIKRSDSAFFWEERDIM----AHANSEWIVQL- 108
Query: 583 TNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMG 642
Y + + LY VM+Y+PGGDL++L+ I E+ ARFY AE+ A++++H MG
Sbjct: 109 ---HYAFQDDKY--LYMVMEYMPGGDLVNLMSNYDIPEK-WARFYTAEVVLALDAIHSMG 162
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
FIHRD+KPDN+L+D+ GH+KL DFG C + N G D + P SQG
Sbjct: 163 FIHRDVKPDNMLLDKSGHLKLADFGTC--MKMDANGMVRCDTA-VGTPDYISPEVLKSQG 219
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
G Y + CDWWSVGV
Sbjct: 220 GDGY--------------------------------------------YGRECDWWSVGV 235
Query: 763 ILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGK 822
LYEMLVG PF A++ T K+++ ++ L P + ++S + DLI T + RLG+
Sbjct: 236 FLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGR 295
Query: 823 NA-SEVKAHPFFSNVDFE-KGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNSDSMLDEL 880
N E+K+HPFF N + +R P +P + + +DTSNFD ++ D L +
Sbjct: 296 NGVDEIKSHPFFKNDQWTFDNIRETVAPVVPELSSDIDTSNFDDIEDDDKNEETFPLPKA 355
Query: 881 SDELKSPFHGF 891
+ PF GF
Sbjct: 356 FAGNQLPFIGF 366
Score = 84.4 bits (209), Expect = 3e-17
Identities = 32/70 (45%), Positives = 49/70 (70%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+R + +YAMK L K +++KR+ A ERDI+A A++EW+V+L+Y+FQD LY V
Sbjct: 62 VRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMV 121
Query: 139 MDYIPGEKLI 148
M+Y+PG L+
Sbjct: 122 MEYMPGGDLV 131
Score = 53.2 bits (128), Expect = 3e-07
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFILVGLWVNTMEY 57
MK L K +++KR+ A ERDI+A A++EW+V+L+Y+FQ D ++ + MEY
Sbjct: 73 MKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM-----VMEY 124
Score = 47.8 bits (114), Expect = 1e-05
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 433 LSQKESNYIRLKRAKMDKSMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
LS+ E ++ + +M F IK IG GAFGEV LVR + +YAMK + K
Sbjct: 25 LSRYEKAAEKITKLRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSK 78
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 205 bits (522), Expect = 3e-59
Identities = 138/379 (36%), Positives = 185/379 (48%), Gaps = 85/379 (22%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC-------VGAFGEVTLV------RKIDTNHLYVM 589
G FGEV +V+ T +Y MK + K F E V + I T H Y
Sbjct: 12 GAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLH-YAF 70
Query: 590 KGSPHNNLYFVMDYIPGGDLMSLLIKKGIFE----EPLARFYIAELTCAVESVHKMGFIH 645
+ N LY VMDY GGDL++LL K FE E +ARFYIAE+ A+ S+H++ ++H
Sbjct: 71 QDE--NYLYLVMDYYVGGDLLTLLSK---FEDRLPEDMARFYIAEMVLAIHSIHQLHYVH 125
Query: 646 RDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPG 705
RDIKPDN+L+D +GHI+L DFG C + N D Q S+
Sbjct: 126 RDIKPDNVLLDMNGHIRLADFGSC-----------LKMNQDGTVQSSVA----------- 163
Query: 706 QECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL--LRTG---YTQLCDWWSV 760
VGTP+YI+PE+L + G Y CDWWS+
Sbjct: 164 -----------------------------VGTPDYISPEILQAMEDGMGKYGPECDWWSL 194
Query: 761 GVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAE-AQLSPEGADLILQLCTGADKR 819
GV +YEML G PF A + ET K++N E P+ +S E DLI +L ++R
Sbjct: 195 GVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERR 254
Query: 820 LGKNA-SEVKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNSDSMLD 878
LG+N + K H FF +D+E +R L P+IP + + DTSNFD VD D LRN + +
Sbjct: 255 LGQNGIEDFKKHAFFEGIDWEN-IRNLEAPYIPDVSSPSDTSNFD-VDDDVLRNPE-IAP 311
Query: 879 ELSDELKSPFH-GFFEFTF 896
S S H F FT+
Sbjct: 312 PSSHTGFSGLHLPFVGFTY 330
Score = 72.0 bits (176), Expect = 2e-13
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+++ T +YAMK L K ++LKR + A + ER++L D +W+ L+Y+FQD++ LY V
Sbjct: 20 VKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLV 79
Query: 139 MDYIPGEKLI 148
MDY G L+
Sbjct: 80 MDYYVGGDLL 89
Score = 45.4 bits (107), Expect = 8e-05
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFILVGLWVNTMEYALA 60
MK L K ++LKR + A + ER++L D +W+ L+Y+FQ + ++ + M+Y +
Sbjct: 31 MKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYL-----VMDYYVG 85
Query: 61 ARVL 64
+L
Sbjct: 86 GDLL 89
Score = 37.3 bits (86), Expect = 0.033
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F IK IG GAFGEV +V+ T +YAMK + K
Sbjct: 3 FEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNK 36
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 202 bits (517), Expect = 4e-59
Identities = 84/309 (27%), Positives = 118/309 (38%), Gaps = 76/309 (24%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGSPHNN------ 596
G FG V + T + +K + K E + + + +++ H N
Sbjct: 10 GSFGTVYKAKHKGTGKIVAVKILKKR----SEKSKKDQTARREIRILRRLSHPNIVRLID 65
Query: 597 -------LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
LY VM+Y GGDL L + G E A+ ++ +E +H G IHRD+K
Sbjct: 66 AFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGIIHRDLK 125
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P+NIL+D +G +K+ DFGL +S
Sbjct: 126 PENILLDENGVVKIADFGLAK-KLLKSSSSL----------------------------- 155
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEML 768
+ VGTP Y+APEVLL GY D WS+GVILYE+L
Sbjct: 156 ----------------------TTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELL 193
Query: 769 VGSPPFLANTSAETQYKVINWESC---LHIPAEAQLSPEGADLILQ-LCTGADKRLGKNA 824
G PPF + + P + S E DLI + L KR A
Sbjct: 194 TGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRP--TA 251
Query: 825 SEVKAHPFF 833
E+ HP+F
Sbjct: 252 EEILQHPWF 260
Score = 53.0 bits (128), Expect = 2e-07
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 63 VLKSILGESTTEVDNEIRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWV 122
L LG + + + T + A+K L+K + E IL + +
Sbjct: 2 ELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTAR-REIRILRRLSHPNI 60
Query: 123 VKLYYSFQDKDNLYFVMDYIPG 144
V+L +F+DKD+LY VM+Y G
Sbjct: 61 VRLIDAFEDKDHLYLVMEYCEG 82
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 206 bits (525), Expect = 4e-59
Identities = 128/369 (34%), Positives = 186/369 (50%), Gaps = 77/369 (20%)
Query: 507 VMKTIYKCVGAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIY 566
V+K I + GAFGEV LVR T +Y MK + K ++++ D+ + + I
Sbjct: 47 VVKVIGR--GAFGEVQLVRHKSTRKVYAMKLLSK-------FEMIKRSDSAFFWEERDIM 97
Query: 567 KCVGAFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARF 626
AF V ++ Y + + LY VM+Y+PGGDL++L+ + E ARF
Sbjct: 98 ----AFANSPWVVQL----FYAFQDDRY--LYMVMEYMPGGDLVNLMSNYDV-PEKWARF 146
Query: 627 YIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGD 686
Y AE+ A++++H MGFIHRD+KPDN+L+D+ GH+KL DFG C
Sbjct: 147 YTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMN------------- 193
Query: 687 HGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL 746
++ M RC + VGTP+YI+PEVL
Sbjct: 194 ---KEGM--------------VRC---------------------DTAVGTPDYISPEVL 215
Query: 747 LRTG----YTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLS 802
G Y + CDWWSVGV LYEMLVG PF A++ T K++N ++ L P + +S
Sbjct: 216 KSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDIS 275
Query: 803 PEGADLILQLCTGADKRLGKNA-SEVKAHPFFSNVDFE-KGVRTLTPPHIPRIQNSMDTS 860
E +LI T + RLG+N E+K H FF N + + +R P +P + + +DTS
Sbjct: 276 KEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTS 335
Query: 861 NFDPVDPDK 869
NFD ++ DK
Sbjct: 336 NFDDIEEDK 344
Score = 71.6 bits (175), Expect = 4e-13
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+R T +YAMK L K +++KR+ A ERDI+A A++ WVV+L+Y+FQD LY V
Sbjct: 62 VRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMV 121
Query: 139 MDYIPGEKLI 148
M+Y+PG L+
Sbjct: 122 MEYMPGGDLV 131
Score = 48.1 bits (114), Expect = 1e-05
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFILVGLWVNTMEY 57
MK L K +++KR+ A ERDI+A A++ WVV+L+Y+FQ D ++ + MEY
Sbjct: 73 MKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYM-----VMEY 124
Score = 39.2 bits (91), Expect = 0.009
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 439 NYIRLKRAKMDKSMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
N IR R K + +K+ IG GAFGEV LVR T +YAMK + K
Sbjct: 33 NKIRDLRMKAEDYEVVKV--IGRGAFGEVQLVRHKSTRKVYAMKLLSK 78
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 203 bits (518), Expect = 1e-58
Identities = 110/332 (33%), Positives = 159/332 (47%), Gaps = 43/332 (12%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK-CVGAFGEVTLV---RKI--DTNH-----LYVMKG 591
G G V LVR T L+ +K + K + +V V ++I +H LY
Sbjct: 12 GDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQ 71
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIK--KGIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
+ L VMDY PGG+L LL + E +ARFY AE+ A+E +H +G ++RD+K
Sbjct: 72 TETY-LCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLK 130
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P+NIL+ GHI L+DF L + S+ +G+
Sbjct: 131 PENILLHESGHIMLSDFDLSK------------QSDVEPPP----VSKALRKGSRRSSVN 174
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV 769
I S E R ++S VGT YIAPEV+ G+ DWW++G++LYEML
Sbjct: 175 SIPSETFSEEPSFR-------SNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLY 227
Query: 770 GSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLC-TGADKRLG--KNASE 826
G+ PF + ET ++ E + P +S DLI +L KRLG + A+E
Sbjct: 228 GTTPFKGSNRDETFSNILKKE--VTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAE 285
Query: 827 VKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMD 858
+K HPFF V++ +R TPP IPR + +D
Sbjct: 286 IKQHPFFRGVNWAL-IRHTTPPIIPRPDDGID 316
Score = 82.7 bits (205), Expect = 5e-17
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+RL T L+A+K L K +++KRN+V V E++ILA D+ ++ LY SFQ + L V
Sbjct: 20 VRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLV 79
Query: 139 MDYIPG 144
MDY PG
Sbjct: 80 MDYCPG 85
Score = 50.7 bits (122), Expect = 2e-06
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFI 46
+K L K +++KRN+V V E++ILA D+ ++ LY SFQ + ++
Sbjct: 31 LKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYL 76
Score = 46.1 bits (110), Expect = 5e-05
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F KIK +G G G V LVR T L+A+K + K
Sbjct: 3 FKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDK 36
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 201 bits (514), Expect = 2e-58
Identities = 100/329 (30%), Positives = 150/329 (45%), Gaps = 71/329 (21%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVM--KTIYKCVGAFG 573
G+F V L ++ +TN Y +K + K ++ +K+ YV K + +
Sbjct: 12 GSFSTVVLAKEKETNKEYAIKILDK-----RQLIKEKKVK----YVKIEKEVLTRL---- 58
Query: 574 EVTLVRKIDTNHLYVMK--GSPHN--NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIA 629
H ++K + + NLYFV++Y P G+L+ + K G +E RFY A
Sbjct: 59 ---------NGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAA 109
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR 689
E+ A+E +H G IHRD+KP+NIL+D+D HIK+TDFG +K N
Sbjct: 110 EILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFG---------TAKVLDPNSS--- 157
Query: 690 QDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT 749
P + +E+ RRR S VGT Y++PE+L
Sbjct: 158 --------------PESNKGDATNIDSQIEKNRRR------FASFVGTAEYVSPELLNEK 197
Query: 750 GYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCL--HIPAEAQLSPEGAD 807
+ D W++G I+Y+ML G PPF + T K++ E + P +A+ D
Sbjct: 198 PAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPNFPPDAK------D 251
Query: 808 LILQLC-TGADKRLGKNAS--EVKAHPFF 833
LI +L RLG N E+KAHPFF
Sbjct: 252 LIEKLLVLDPQDRLGVNEGYDELKAHPFF 280
Score = 76.1 bits (188), Expect = 6e-15
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFV 138
+ +TN YA+K L K ++K +V +VK E+++L + ++KLYY+FQD++NLYFV
Sbjct: 21 KEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV 80
Query: 139 MDYIPGEKLIPY 150
++Y P +L+ Y
Sbjct: 81 LEYAPNGELLQY 92
Score = 44.5 bits (106), Expect = 1e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F K IG G+F V L ++ +TN YA+K + K
Sbjct: 3 FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDK 36
Score = 38.3 bits (90), Expect = 0.012
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQ 41
+K L K ++K +V +VK E+++L + ++KLYY+FQ
Sbjct: 31 IKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQ 72
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 202 bits (515), Expect = 3e-58
Identities = 128/393 (32%), Positives = 196/393 (49%), Gaps = 98/393 (24%)
Query: 516 GAFGEVTLVRKI---DTNHLYVMKTIYKCVGVFGEVTLVR-KIDTNHLYVMKTIYKCVGA 571
G +G+V VRK+ DT ++ MK + K T+VR + DT H + I + V
Sbjct: 7 GGYGKVFQVRKVTGADTGKIFAMKVLKK-------ATIVRNQKDTAHTKAERNILEAVKH 59
Query: 572 FGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL 631
V L+ T LY +++Y+ GG+L L ++GIF E A FY++E+
Sbjct: 60 PFIVDLIYAFQTG----------GKLYLILEYLSGGELFMHLEREGIFMEDTACFYLSEI 109
Query: 632 TCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQD 691
+ A+E +H+ G I+RD+KP+NIL+D GH+KLTDFGLC
Sbjct: 110 SLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLC---------------------- 147
Query: 692 SMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGY 751
E +GT + H+ GT Y+APE+L+R+G+
Sbjct: 148 ----KESIHEGT--------------------------VTHTFCGTIEYMAPEILMRSGH 177
Query: 752 TQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQ 811
+ DWWS+G ++Y+ML G+PPF A +T K++ + L++P L+PE DL+ +
Sbjct: 178 GKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGK--LNLP--PYLTPEARDLLKK 233
Query: 812 LCT-GADKRLG---KNASEVKAHPFFSNVDFEKGV-RTLTPPHIPRIQNSMDTSNFD--- 863
L RLG +A+EV++HPFF +V+++ + R + PP P +Q+ D S FD
Sbjct: 234 LLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWDDLLARKVEPPFKPLLQSEEDVSQFDSKF 293
Query: 864 ----PVD-PDKLRNSDSMLDELSDELKSPFHGF 891
PVD PD DS L E +++ F GF
Sbjct: 294 TRQTPVDSPD-----DSTLSESANQ---IFLGF 318
Score = 65.6 bits (160), Expect = 2e-11
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 83 DTNHLYAMKTLRKADVLKRNQ--VAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD 140
DT ++AMK L+KA ++ RNQ AH KAER+IL + ++V L Y+FQ LY +++
Sbjct: 22 DTGKIFAMKVLKKATIV-RNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILE 80
Query: 141 YIPGEKL 147
Y+ G +L
Sbjct: 81 YLSGGEL 87
Score = 44.8 bits (106), Expect = 1e-04
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 1 MKTLRKADVLKRNQ--VAHVKAERDILAEADNEWVVKLYYSFQGD 43
MK L+KA ++ RNQ AH KAER+IL + ++V L Y+FQ
Sbjct: 29 MKVLKKATIV-RNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTG 72
Score = 35.5 bits (82), Expect = 0.10
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 456 IKPIGVGAFGEVTLVRKI---DTNHLYAMKTIYKCVGAFGEVTLVR-KIDTNHLYVMKTI 511
+K +G G +G+V VRK+ DT ++AMK + K T+VR + DT H + I
Sbjct: 1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKK-------ATIVRNQKDTAHTKAERNI 53
Query: 512 YKCV 515
+ V
Sbjct: 54 LEAV 57
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 196 bits (500), Expect = 3e-56
Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 78/367 (21%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC--------VGAFGEVTLVRKIDTNHLYVMKGSPH 594
G FG+V VRK DT +Y +KTI K E T++ +++ + +K S
Sbjct: 4 GSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQ 63
Query: 595 N--NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
+ LY V+ +I GG+L L ++G F+ ARFY AEL CA+E++HK I+RD+KP+N
Sbjct: 64 SPEKLYLVLAFINGGELFHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPEN 123
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
IL+D GHI L DFGLC K + D
Sbjct: 124 ILLDYQGHIALCDFGLC---------KLNMKDDDK------------------------- 149
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSP 772
++ GTP Y+APE+LL GYT+ DWW++GV+LYEML G P
Sbjct: 150 ------------------TNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLP 191
Query: 773 PFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGA-DKRLGKN-ASEVKAH 830
PF E K++ + L P + DL++ L + +RLG N A E+K H
Sbjct: 192 PFYDENVNEMYRKIL--QEPLRFP--DGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNH 247
Query: 831 PFFSNVDFEK-GVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNS---DSMLDE--LSDEL 884
PFFS + ++K ++ + PP P + +++DTSNFD ++ DS++D+ LS+ +
Sbjct: 248 PFFSQLSWKKLLMKGIQPPFKPAVSSAIDTSNFD----EEFTREKPIDSVVDDSHLSETV 303
Query: 885 KSPFHGF 891
+ F G+
Sbjct: 304 QQQFGGW 310
Score = 71.5 bits (175), Expect = 3e-13
Identities = 29/70 (41%), Positives = 48/70 (68%)
Query: 78 EIRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYF 137
++R DT +YA+KT+RKA ++ R++V H AER +LA+ + ++V L +SFQ + LY
Sbjct: 11 QVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYL 70
Query: 138 VMDYIPGEKL 147
V+ +I G +L
Sbjct: 71 VLAFINGGEL 80
Score = 46.5 bits (110), Expect = 4e-05
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
+KT+RKA ++ R++V H AER +LA+ + ++V L +SFQ
Sbjct: 23 LKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQ 63
Score = 37.6 bits (87), Expect = 0.023
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
IG G+FG+V VRK DT +YA+KTI K
Sbjct: 1 IGKGSFGKVMQVRKRDTQRIYALKTIRK 28
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 188 bits (480), Expect = 5e-54
Identities = 91/317 (28%), Positives = 144/317 (45%), Gaps = 75/317 (23%)
Query: 542 VGVFGEVTLVRKIDTNHLYVMKTIYK-CVGAFGEVTLV---RKI--DTNHLYVMK----G 591
VG FG V LV+ N + +K + K + G+ + ++I + NH +++K
Sbjct: 3 VGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTF 62
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+Y +M+Y GG+L ++L +G+F+E ARFYIA + A E +H G I+RD+KP+
Sbjct: 63 KDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPE 122
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
N+L+D +G++KL DFG
Sbjct: 123 NLLLDSNGYVKLVDFGFA------------------------------------------ 140
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
K L+ ++ + GTP Y+APE++L GY D+WS+G++LYE+L G
Sbjct: 141 ----KKLKSGQK-------TWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGR 189
Query: 772 PPFLANTSAETQYKVIN----WESCLHIPAEAQLSPEGADLILQLCTGAD-KRLG--KN- 823
PPF E ++ N L P + DLI QL +RLG K
Sbjct: 190 PPF--GEDDEDPMEIYNDILKGNGKLEFP--NYIDKAAKDLIKQLLRRNPEERLGNLKGG 245
Query: 824 ASEVKAHPFFSNVDFEK 840
++K H +F+ D+E
Sbjct: 246 IKDIKKHKWFNGFDWEG 262
Score = 79.2 bits (196), Expect = 4e-16
Identities = 22/69 (31%), Positives = 46/69 (66%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+++ N +A+K ++K +++ Q H+ +E++IL E ++ ++VKLY +F+DK +Y +
Sbjct: 12 VKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYML 71
Query: 139 MDYIPGEKL 147
M+Y G +L
Sbjct: 72 MEYCLGGEL 80
Score = 49.2 bits (118), Expect = 4e-06
Identities = 13/41 (31%), Positives = 29/41 (70%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
+K ++K +++ Q H+ +E++IL E ++ ++VKLY +F+
Sbjct: 23 LKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFK 63
Score = 37.2 bits (87), Expect = 0.030
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
+GVG FG V LV+ N +A+K + K
Sbjct: 1 LGVGGFGRVELVKVKSKNRTFALKCVKK 28
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 190 bits (484), Expect = 6e-54
Identities = 128/355 (36%), Positives = 181/355 (50%), Gaps = 77/355 (21%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC-------VGAFGEVTLV------RKIDTNHLYVM 589
G FGEV +V+ + + ++ MK + K F E V + I T H Y
Sbjct: 12 GAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLH-YAF 70
Query: 590 KGSPHNNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
+ NNLY VMDY GGDL++LL K + E +ARFY+AE+ A++SVH++ ++HRDI
Sbjct: 71 QDE--NNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDI 128
Query: 649 KPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
KPDNIL+D +GHI+L DFG C D Q S+ + GTP
Sbjct: 129 KPDNILMDMNGHIRLADFGSCLKLM-----------EDGTVQSSV------AVGTP---- 167
Query: 709 RCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL--LRTG---YTQLCDWWSVGVI 763
+YI+PE+L + G Y CDWWS+GV
Sbjct: 168 ------------------------------DYISPEILQAMEDGKGKYGPECDWWSLGVC 197
Query: 764 LYEMLVGSPPFLANTSAETQYKVINWESCLHIPAE-AQLSPEGADLILQLCTGADKRLGK 822
+YEML G PF A + ET K++N + PA+ +S + DLI +L + RLG+
Sbjct: 198 MYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQ 257
Query: 823 NASE-VKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNSDSM 876
N E K HPFF+ +D++ +R P+IP + + DTSNFD VD D L+NS++M
Sbjct: 258 NGIEDFKQHPFFTGIDWDN-IRNCEAPYIPEVSSPTDTSNFD-VDDDCLKNSETM 310
Score = 73.9 bits (181), Expect = 5e-14
Identities = 31/70 (44%), Positives = 49/70 (70%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
++L + + ++AMK L K ++LKR + A + ERD+L DN+W+ L+Y+FQD++NLY V
Sbjct: 20 VKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLV 79
Query: 139 MDYIPGEKLI 148
MDY G L+
Sbjct: 80 MDYYVGGDLL 89
Score = 49.3 bits (117), Expect = 6e-06
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGD 43
MK L K ++LKR + A + ERD+L DN+W+ L+Y+FQ +
Sbjct: 31 MKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDE 73
Score = 31.2 bits (70), Expect = 2.6
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F +K IG GAFGEV +V+ + + ++AMK + K
Sbjct: 3 FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNK 36
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 186 bits (475), Expect = 1e-52
Identities = 115/391 (29%), Positives = 176/391 (45%), Gaps = 99/391 (25%)
Query: 536 KTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLY-----VMK 590
K I K G FG+V L + Y +K + K +++K + H+ ++K
Sbjct: 1 KVIGK--GSFGKVLLAKHKADGKFYAVKVLQK-------KAILKKKEQKHIMAERNVLLK 51
Query: 591 GSPH-------------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVES 637
H + LYFV+DY+ GG+L L ++ F EP ARFY AE+ A+
Sbjct: 52 NVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARFYAAEIASALGY 111
Query: 638 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSE 697
+H + I+RD+KP+NIL+D GH+ LTDFGLC ++ +E S+
Sbjct: 112 LHSLNIIYRDLKPENILLDSQGHVVLTDFGLC--------------------KEGIEHSK 151
Query: 698 EWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDW 757
S + GTP Y+APEVL + Y + DW
Sbjct: 152 TTS--------------------------------TFCGTPEYLAPEVLRKQPYDRTVDW 179
Query: 758 WSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQ--LSPEGADLILQLC-T 814
W +G +LYEML G PPF + +AE +++ L+ P + +S L+ L
Sbjct: 180 WCLGAVLYEMLYGLPPFYSRDTAEM------YDNILNKPLRLKPNISVSARHLLEGLLQK 233
Query: 815 GADKRLGKNAS--EVKAHPFFSNVDFEKGV-RTLTPPHIPRIQNSMDTSNFDP------V 865
KRLG E+K H FFS+++++ V + +TPP P + MD +FDP V
Sbjct: 234 DRTKRLGAKDDFLEIKNHVFFSSINWDDLVNKKITPPFNPNVSGPMDLKHFDPEFTEEPV 293
Query: 866 DPDKLRNSDSMLDELSDELKSPFHGFFEFTF 896
++ DS+L S +K F F++
Sbjct: 294 PNSVGKSPDSVLVSAS--VKEADDAFLGFSY 322
Score = 68.7 bits (168), Expect = 2e-12
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 87 LYAMKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFVMDYIPGE 145
YA+K L+K +LK+ + H+ AER++L + + ++V L+YSFQ D LYFV+DY+ G
Sbjct: 22 FYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGG 81
Query: 146 KL 147
+L
Sbjct: 82 EL 83
Score = 41.7 bits (98), Expect = 0.001
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQ 41
+K L+K +LK+ + H+ AER++L + + ++V L+YSFQ
Sbjct: 25 VKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQ 66
Score = 30.5 bits (69), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 457 KPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
K IG G+FG+V L + YA+K + K
Sbjct: 1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQK 30
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 185 bits (471), Expect = 3e-52
Identities = 110/394 (27%), Positives = 172/394 (43%), Gaps = 100/394 (25%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
G FG+V L T LY +K + K G++ + + + L K I++ +
Sbjct: 10 GHFGKVLLAEYKKTGELYAIKALKK-----GDI--IARDEVESLMCEKRIFETANSERHP 62
Query: 576 TLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAV 635
LV N + H + FVM+Y GGDLM + I +F EP A FY A + +
Sbjct: 63 FLV-----NLFACFQTEDH--VCFVMEYAAGGDLM-MHIHTDVFSEPRAVFYAACVVLGL 114
Query: 636 ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEP 695
+ +H+ ++RD+K DN+L+D +G +K+ DFGLC ++ M
Sbjct: 115 QYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLC--------------------KEGMGF 154
Query: 696 SEEWSQ--GTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQ 753
+ S GTP ++APEVL T YT+
Sbjct: 155 GDRTSTFCGTP----------------------------------EFLAPEVLTETSYTR 180
Query: 754 LCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLC 813
DWW +GV++YEMLVG PF + E ++N E + LS E ++ +L
Sbjct: 181 AVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDE----VRYPRFLSREAISIMRRLL 236
Query: 814 T-GADKRLG---KNASEVKAHPFFSNVDFEKGV-RTLTPPHIPRIQNSMDTSNFD----- 863
++RLG K+A +VK PFF +++++ + R + PP +P I+ D SNFD
Sbjct: 237 RRNPERRLGSGEKDAEDVKKQPFFRDINWDDLLARKIKPPFVPTIKGPEDVSNFDEEFTS 296
Query: 864 ------PVDPDKLRNSDSMLDELSDELKSPFHGF 891
P +L L++E + F GF
Sbjct: 297 EAPVLTPPREPRL---------LTEEEQELFRGF 321
Score = 57.8 bits (140), Expect = 8e-09
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNE---WVVKLYYSFQDKDNLYFVMD 140
T LYA+K L+K D++ R++V + E+ I A++E ++V L+ FQ +D++ FVM+
Sbjct: 23 TGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVME 82
Query: 141 YIPGEKLI 148
Y G L+
Sbjct: 83 YAAGGDLM 90
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 184 bits (468), Expect = 6e-52
Identities = 111/333 (33%), Positives = 155/333 (46%), Gaps = 51/333 (15%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK--------CVGAFGEVTLVRKIDTNHLYVMKGS-- 592
G +G V LVR +T + MK I K F E ++ + + M S
Sbjct: 12 GAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFE 71
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
+L VM+Y+ GGD +LL G +AR Y AE A+E +H G +HRD+KPDN
Sbjct: 72 TKRHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDN 131
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+LI GHIKLTDFGL + + Y+ + +
Sbjct: 132 LLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEK------------------------- 166
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSP 772
+ R + Q C GTP YIAPEV+LR GY + DWW++G+ILYE LVG
Sbjct: 167 ------DTREFLDKQVC------GTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCV 214
Query: 773 PFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLC-TGADKRLGKN-ASEVKAH 830
PF +T E +VI+ + + L + DLI +L +RLG A EVK H
Sbjct: 215 PFFGDTPEELFGQVIS-DDIEWPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH 273
Query: 831 PFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFD 863
FF +D+ +R IP++++ DTS FD
Sbjct: 274 RFFLGLDWNGLLRQ-KAEFIPQLESEDDTSYFD 305
Score = 64.4 bits (157), Expect = 5e-11
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+R +T +AMK + K +++ RNQ+ V ERDIL A+N +VV ++ SF+ K +L V
Sbjct: 20 VRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMV 79
Query: 139 MDYIPG 144
M+Y+ G
Sbjct: 80 MEYVEG 85
Score = 47.1 bits (112), Expect = 2e-05
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK + K +++ RNQ+ V ERDIL A+N +VV ++ SF+
Sbjct: 31 MKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFE 71
Score = 34.0 bits (78), Expect = 0.28
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F IK I GA+G V LVR +T +AMK I K
Sbjct: 3 FETIKLISNGAYGAVYLVRHKETRQRFAMKKINK 36
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 183 bits (466), Expect = 5e-51
Identities = 115/365 (31%), Positives = 177/365 (48%), Gaps = 69/365 (18%)
Query: 507 VMKTIYKCVGAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIY 566
V+K I + GAFGEV LVR + +Y MK + K ++++ D+ + + I
Sbjct: 47 VVKVIGR--GAFGEVQLVRHKSSQKVYAMKLLSK-------FEMIKRSDSAFFWEERDIM 97
Query: 567 KCVGAFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARF 626
AF V ++ + + LY VM+Y+PGGDL++L+ + E A+F
Sbjct: 98 ----AFANSPWVVQL----FCAFQDDKY--LYMVMEYMPGGDLVNLMSNYDV-PEKWAKF 146
Query: 627 YIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGD 686
Y AE+ A++++H MG IHRD+KPDN+L+D+ GH+KL DFG C T + +
Sbjct: 147 YTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDET---GMVRCDTA 203
Query: 687 HGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL 746
G D + P SQG G
Sbjct: 204 VGTPDYISPEVLKSQGGDGY---------------------------------------- 223
Query: 747 LRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGA 806
Y + CDWWSVGV L+EMLVG PF A++ T K+++ ++ L+ P + ++S
Sbjct: 224 ----YGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAK 279
Query: 807 DLILQLCTGADKRLGKNA-SEVKAHPFFSNVDFE-KGVRTLTPPHIPRIQNSMDTSNFDP 864
+LI T + RLG+N E+K HPFF N + +R P +P + + +D+SNFD
Sbjct: 280 NLICAFLTDREVRLGRNGVEEIKQHPFFKNDQWNWDNIRETAAPVVPELSSDIDSSNFDD 339
Query: 865 VDPDK 869
++ DK
Sbjct: 340 IEDDK 344
Score = 68.5 bits (167), Expect = 4e-12
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+R + +YAMK L K +++KR+ A ERDI+A A++ WVV+L+ +FQD LY V
Sbjct: 62 VRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMV 121
Query: 139 MDYIPGEKLI 148
M+Y+PG L+
Sbjct: 122 MEYMPGGDLV 131
Score = 43.9 bits (103), Expect = 3e-04
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFILVGLWVNTMEY 57
MK L K +++KR+ A ERDI+A A++ WVV+L+ +FQ D ++ + MEY
Sbjct: 73 MKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM-----VMEY 124
Score = 37.7 bits (87), Expect = 0.026
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 433 LSQKESNYIRLKRAKMDKSMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
L++ E ++++ +M + +K IG GAFGEV LVR + +YAMK + K
Sbjct: 25 LNRYEKIVRKIRKLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSK 78
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 180 bits (459), Expect = 6e-51
Identities = 101/340 (29%), Positives = 152/340 (44%), Gaps = 93/340 (27%)
Query: 543 GVFGEVTLVRKI---DTNHLYVMKTIYKCVGAFGEVTLVRKIDT-NH-------LYVMKG 591
G +G+V LVRK+ D LY MK + K T+V+K T H L ++
Sbjct: 11 GAYGKVFLVRKVGGHDAGKLYAMKVLKK-------ATIVQKAKTAEHTRTERQVLEAVRR 63
Query: 592 SP-----------HNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHK 640
P L+ ++DY+ GG+L + L ++ F E R YIAE+ A++ +H+
Sbjct: 64 CPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQ 123
Query: 641 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWS 700
+G I+RDIK +NIL+D +GH+ LTDFGL F
Sbjct: 124 LGIIYRDIKLENILLDSEGHVVLTDFGLSKEF---------------------------- 155
Query: 701 QGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR--TGYTQLCDWW 758
+E R A+S GT Y+APEV+ G+ + DWW
Sbjct: 156 --LAEEEER---------------------AYSFCGTIEYMAPEVIRGGSGGHDKAVDWW 192
Query: 759 SVGVILYEMLVGSPPFLA----NTSAETQYKVINWESCLHIPAEAQLSPEGADLILQ-LC 813
S+GV+ +E+L G+ PF N+ +E +++ P +S E D I + L
Sbjct: 193 SLGVLTFELLTGASPFTVDGEQNSQSEISRRILK----SKPPFPKTMSAEARDFIQKLLE 248
Query: 814 TGADKRLGKN-ASEVKAHPFFSNVDFEKGV-RTLTPPHIP 851
KRLG N A E+K HPFF +D++ + + P P
Sbjct: 249 KDPKKRLGANGADEIKNHPFFQGIDWDDLAAKRIPAPFKP 288
Score = 60.2 bits (146), Expect = 1e-09
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 83 DTNHLYAMKTLRKADVLKRNQVA-HVKAERDIL-AEADNEWVVKLYYSFQDKDNLYFVMD 140
D LYAMK L+KA ++++ + A H + ER +L A ++V L+Y+FQ L+ ++D
Sbjct: 26 DAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILD 85
Query: 141 YIPGEKL 147
Y+ G +L
Sbjct: 86 YVNGGEL 92
Score = 39.4 bits (92), Expect = 0.006
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 453 FIKIKPIGVGAFGEVTLVRKI---DTNHLYAMKTIYKCVGAFGEVTLVRKIDT 502
F ++ +G GA+G+V LVRK+ D LYAMK + K T+V+K T
Sbjct: 2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKK-------ATIVQKAKT 47
Score = 37.1 bits (86), Expect = 0.034
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 1 MKTLRKADVLKRNQVA-HVKAERDIL-AEADNEWVVKLYYSFQGD 43
MK L+KA ++++ + A H + ER +L A ++V L+Y+FQ D
Sbjct: 33 MKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTD 77
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 177 bits (451), Expect = 3e-50
Identities = 102/320 (31%), Positives = 140/320 (43%), Gaps = 79/320 (24%)
Query: 531 HLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYK--CVGAFGEVTLVRKIDTNHLYV 588
H +++ I K G FG+V +V+K DT ++ MK + K CV G V V N +
Sbjct: 1 HFELLRVIGK--GAFGKVCIVQKRDTKKMFAMKYMNKQKCV-EKGSVRNVL----NERRI 53
Query: 589 MKGSPHN-------------NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAV 635
++ H N+Y V+D + GGDL L +K F E +F+I E+ A+
Sbjct: 54 LQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLAL 113
Query: 636 ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEP 695
E +H G IHRDIKPDNIL+D GH+ +TDF + T
Sbjct: 114 EYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKV----------------------- 150
Query: 696 SEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLC 755
TP L S GTP Y+APEVL R GY+
Sbjct: 151 -------TPDT-----------------------LTTSTSGTPGYMAPEVLCRQGYSVAV 180
Query: 756 DWWSVGVILYEMLVGSPPFLANTS-AETQYKVINWESCLHIPAEAQLSPEGADLILQLCT 814
DWWS+GV YE L G P+ ++ Q + + + PA S E D I +L
Sbjct: 181 DWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATW--STEAIDAINKLLE 238
Query: 815 -GADKRLGKNASEVKAHPFF 833
KRLG N ++K HP+F
Sbjct: 239 RDPQKRLGDNLKDLKNHPYF 258
Score = 72.0 bits (177), Expect = 8e-14
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 83 DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYI 142
DT ++AMK + K +++ V +V ER IL E ++ ++V L+YSFQD++N+Y V+D +
Sbjct: 23 DTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLL 82
Query: 143 PG 144
G
Sbjct: 83 LG 84
Score = 43.1 bits (102), Expect = 3e-04
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQG--DIFILVGL 50
MK + K +++ V +V ER IL E ++ ++V L+YSFQ +++++V L
Sbjct: 30 MKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDL 81
Score = 41.5 bits (98), Expect = 0.001
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK--CVGAFGEVTLVRK 499
F ++ IG GAFG+V +V+K DT ++AMK + K CV G V V
Sbjct: 2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCV-EKGSVRNVLN 49
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 177 bits (451), Expect = 2e-49
Identities = 113/367 (30%), Positives = 167/367 (45%), Gaps = 79/367 (21%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRK----IDTNHLYVMK----G 591
G FG+V L TN + +K + K V E T+V + + H ++
Sbjct: 6 GSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTF 65
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+L+FVM+Y+ GGDLM + G F+E ARFY AE+ C ++ +HK G I+RD+K D
Sbjct: 66 QTKEHLFFVMEYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLD 125
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
N+L+D+DGHIK+ DFG+C NG+ G+ + GTP
Sbjct: 126 NVLLDKDGHIKIADFGMCK----------ENMNGE-GKASTF-------CGTP------- 160
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
+YIAPE+L Y + DWWS GV+LYEML+G
Sbjct: 161 ---------------------------DYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQ 193
Query: 772 PPFLANTSAETQYKVINWESCLHIPAEAQ-LSPEGADLILQLCT-GADKRLGKNASEVKA 829
PF E + P + +S E D + +L KRLG +++
Sbjct: 194 SPFHGEDEDE-----LFDSILNDRPHFPRWISKEAKDCLSKLFERDPTKRLGV-DGDIRQ 247
Query: 830 HPFFSNVDFEK-GVRTLTPPHIPRIQNSMDTSNFDPV---DPDKLRNSD-SMLDELSDEL 884
HPFF +D+E+ R + PP P++++ D SNFD + +L D +L + E
Sbjct: 248 HPFFRGIDWERLEKREIPPPFKPKVKSPSDASNFDREFTNEKVRLSPVDKKLLASMDQEQ 307
Query: 885 KSPFHGF 891
F GF
Sbjct: 308 ---FRGF 311
Score = 53.6 bits (129), Expect = 2e-07
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 81 LIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEA-DNEWVVKLYYSFQDKDNLYFVM 139
L TN +A+K L+K VL+ + V ER +LA A ++ ++ L+ +FQ K++L+FVM
Sbjct: 16 LKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVM 75
Query: 140 DYIPGEKLI 148
+Y+ G L+
Sbjct: 76 EYLNGGDLM 84
Score = 31.3 bits (71), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 457 KPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCV 488
K +G G+FG+V L TN +A+K + K V
Sbjct: 1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDV 32
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 172 bits (438), Expect = 1e-47
Identities = 105/345 (30%), Positives = 165/345 (47%), Gaps = 80/345 (23%)
Query: 543 GVFGEVTLVRKI---DTNHLYVMKTIYKCVGAFGEVTLVR-KIDTNHLYVMKGSP----- 593
G +G+V LVRK+ DT LY MK + K T+ + + N L ++ SP
Sbjct: 11 GAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTL 70
Query: 594 ------HNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
L+ ++DY+ GG++ + L ++ F E RFY E+ A+E +HK+G ++RD
Sbjct: 71 HYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRD 130
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQE 707
IK +NIL+D +GH+ LTDFGL F
Sbjct: 131 IKLENILLDSEGHVVLTDFGLSKEF----------------------------------- 155
Query: 708 CRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYE 766
L + R + C GT Y+APE++ + G+ + DWWS+G++++E
Sbjct: 156 ----------LSEEKERTYSFC------GTIEYMAPEIIRGKGGHGKAVDWWSLGILIFE 199
Query: 767 MLVGSPPFL----ANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQL-CTGADKRLG 821
+L G+ PF NT +E +++ + P + + PE DL+ +L KRLG
Sbjct: 200 LLTGASPFTLEGERNTQSEVSRRILKCDP----PFPSFIGPEAQDLLHKLLRKDPKKRLG 255
Query: 822 ---KNASEVKAHPFFSNVDFEK-GVRTLTPPHIPRIQNSMDTSNF 862
+ ASE+K HPFF +D+E +R + PP P I+N +D NF
Sbjct: 256 AGPQGASEIKEHPFFKGLDWEALALRKVNPPFRPSIRNELDVGNF 300
Score = 57.7 bits (139), Expect = 1e-08
Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 83 DTNHLYAMKTLRKADVLKRNQVA-HVKAERDILAEA-DNEWVVKLYYSFQDKDNLYFVMD 140
DT LYAMK L+KA ++++ + H + ER++L + ++V L+Y+FQ + L+ ++D
Sbjct: 26 DTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILD 85
Query: 141 YIPGEKL 147
Y+ G ++
Sbjct: 86 YVSGGEM 92
Score = 43.8 bits (103), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 453 FIKIKPIGVGAFGEVTLVRKI---DTNHLYAMKTIYKC 487
F +K +G GA+G+V LVRK+ DT LYAMK + K
Sbjct: 2 FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKA 39
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 167 bits (425), Expect = 4e-46
Identities = 115/339 (33%), Positives = 155/339 (45%), Gaps = 73/339 (21%)
Query: 543 GVFGEVTLVRKI---DTNHLYVMKTIYKC---VGAFGEVTLVRKI--DTNHLYVMK---- 590
G FG+V LVRKI D LY MK + K V + R I + NH +++K
Sbjct: 7 GSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYA 66
Query: 591 GSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
LY ++D++ GGDL + L K+ +F E +FY+AEL A++ +H +G I+RD+KP
Sbjct: 67 FQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKP 126
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
+NIL+D +GHIKLTDFGL H K Y G + M P
Sbjct: 127 ENILLDEEGHIKLTDFGLSKE-SIDHEKKAYSFCGT---VEYMAP--------------- 167
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
E RR H TQ DWWS GV+++EML G
Sbjct: 168 --------EVVNRRGH-------------------------TQSADWWSFGVLMFEMLTG 194
Query: 771 SPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCT-GADKRLG---KNASE 826
S PF ET ++ ++ L +P LSPE L+ L RLG E
Sbjct: 195 SLPFQGKDRKETMTMIL--KAKLGMP--QFLSPEAQSLLRALFKRNPANRLGAGPDGVEE 250
Query: 827 VKAHPFFSNVDFEKGVR-TLTPPHIPRIQNSMDTSNFDP 864
+K HPFFS +D+ K R + PP P + DT FDP
Sbjct: 251 IKRHPFFSTIDWNKLYRREIKPPFKPAVGRPDDTFYFDP 289
Score = 66.8 bits (163), Expect = 1e-11
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 83 DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYI 142
D LYAMK L+KA + R++V K ERDILAE ++ ++VKL+Y+FQ + LY ++D++
Sbjct: 22 DAGQLYAMKVLKKATLKVRDRV-RTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFL 80
Query: 143 PGEKL 147
G L
Sbjct: 81 RGGDL 85
Score = 44.0 bits (104), Expect = 2e-04
Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK L+KA + R++V K ERDILAE ++ ++VKL+Y+FQ
Sbjct: 29 MKVLKKATLKVRDRV-RTKMERDILAEVNHPFIVKLHYAFQ 68
Score = 42.1 bits (99), Expect = 0.001
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 456 IKPIGVGAFGEVTLVRKI---DTNHLYAMKTIYKC---VGAFGEVTLVRKI--DTNHLYV 507
+K +G G+FG+V LVRKI D LYAMK + K V + R I + NH ++
Sbjct: 1 LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFI 60
Query: 508 MKTIY 512
+K Y
Sbjct: 61 VKLHY 65
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 160 bits (406), Expect = 2e-43
Identities = 105/348 (30%), Positives = 157/348 (45%), Gaps = 93/348 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLY-----VMKGSPH--- 594
G FG+V L ++ Y +K + K T+++K + NH+ ++K H
Sbjct: 6 GSFGKVLLAKRKSDGSFYAVKVLQK-------KTILKKKEQNHIMAERNVLLKNLKHPFL 58
Query: 595 ----------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFI 644
LYFV+DY+ GG+L L ++ F EP ARFY AE+ A+ +H + I
Sbjct: 59 VGLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNII 118
Query: 645 HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTP 704
+RD+KP+NIL+D GH+ LTDFGLC ++ +EP E S
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGLC--------------------KEGVEPEETTS---- 154
Query: 705 GQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL 764
+ GTP Y+APEVL + Y + DWW +G +L
Sbjct: 155 ----------------------------TFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVL 186
Query: 765 YEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTG-----ADKR 819
YEML G PPF + ++ +++ LH P QL L G +R
Sbjct: 187 YEMLYGLPPFYSRDVSQM------YDNILHKP--LQLPGGKTVAACDLLVGLLHKDQRRR 238
Query: 820 LGKNAS--EVKAHPFFSNVDFEKGV-RTLTPPHIPRIQNSMDTSNFDP 864
LG A E+K H FFS ++++ + +TPP+ P + D +FDP
Sbjct: 239 LGAKADFLEIKNHVFFSPINWDDLYHKRITPPYNPNVAGPADLRHFDP 286
Score = 58.1 bits (140), Expect = 7e-09
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 85 NHLYAMKTLRKADVLKRNQVAHVKAERDILAEA-DNEWVVKLYYSFQDKDNLYFVMDYIP 143
YA+K L+K +LK+ + H+ AER++L + + ++V L+YSFQ + LYFV+DY+
Sbjct: 20 GSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVN 79
Query: 144 GEKL 147
G +L
Sbjct: 80 GGEL 83
Score = 34.6 bits (79), Expect = 0.23
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEA-DNEWVVKLYYSFQ 41
+K L+K +LK+ + H+ AER++L + + ++V L+YSFQ
Sbjct: 25 VKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQ 66
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 156 bits (398), Expect = 6e-43
Identities = 82/304 (26%), Positives = 118/304 (38%), Gaps = 67/304 (22%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIY------KCVGAF-GEVTLVRKIDTNH----LYVMKG 591
G FG V L DT L +K++ + + A E+ ++ + + +
Sbjct: 11 GSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERD 70
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
N L ++Y+ GG L SLL K G EP+ R Y ++ + +H G +HRDIK
Sbjct: 71 EEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGA 130
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
NIL+D DG +KL DFG +K
Sbjct: 131 NILVDSDGVVKLADFGC---------AKRLGDIETGEGT--------------------- 160
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
S+ GTP ++APEV+ Y + D WS+G + EM G
Sbjct: 161 --------------------GSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGK 200
Query: 772 PPF--LANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKA 829
PP+ L N A YK+ + IP LS E D L+ C D + A E+
Sbjct: 201 PPWSELGNPMAAL-YKIGSSGEPPEIPEH--LSEEAKD-FLRKCLRRDPKKRPTADELLQ 256
Query: 830 HPFF 833
HPF
Sbjct: 257 HPFL 260
Score = 32.9 bits (76), Expect = 0.59
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIY 485
+ + + +G G+FG V L DT L A+K++
Sbjct: 2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVE 34
Score = 31.4 bits (72), Expect = 2.1
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 83 DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDK--DNLYFVMD 140
DT L A+K++ + + ++ ++ E IL+ + +V+ Y S +D+ + L ++
Sbjct: 23 DTGELMAVKSVELSGDSEE-ELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLE 81
Query: 141 YIPG 144
Y+ G
Sbjct: 82 YVSG 85
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 152 bits (386), Expect = 9e-41
Identities = 106/348 (30%), Positives = 156/348 (44%), Gaps = 93/348 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLY-----VMKGSPH--- 594
G FG+V L R Y +K + K +++K + H+ ++K H
Sbjct: 6 GSFGKVLLARHKAEEKFYAVKVLQK-------KAILKKKEEKHIMSERNVLLKNVKHPFL 58
Query: 595 ----------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFI 644
+ LYFV+DYI GG+L L ++ F EP ARFY AE+ A+ +H + +
Sbjct: 59 VGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIV 118
Query: 645 HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTP 704
+RD+KP+NIL+D GHI LTDFGLC ++++E + GT
Sbjct: 119 YRDLKPENILLDSQGHIVLTDFGLC--------------------KENIEHN-----GTT 153
Query: 705 GQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL 764
C GTP Y+APEVL + Y + DWW +G +L
Sbjct: 154 STFC---------------------------GTPEYLAPEVLHKQPYDRTVDWWCLGAVL 186
Query: 765 YEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTG-----ADKR 819
YEML G PPF + +AE ++N QL P + L G KR
Sbjct: 187 YEMLYGLPPFYSRNTAEMYDNILN--------KPLQLKPNITNSARHLLEGLLQKDRTKR 238
Query: 820 LG--KNASEVKAHPFFSNVDFEKGV-RTLTPPHIPRIQNSMDTSNFDP 864
LG + E+K H FFS ++++ + + +TPP P + D +FDP
Sbjct: 239 LGAKDDFMEIKNHIFFSPINWDDLINKKITPPFNPNVSGPNDLRHFDP 286
Score = 56.2 bits (135), Expect = 3e-08
Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 87 LYAMKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFVMDYIPGE 145
YA+K L+K +LK+ + H+ +ER++L + + ++V L++SFQ D LYFV+DYI G
Sbjct: 22 FYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGG 81
Query: 146 KL 147
+L
Sbjct: 82 EL 83
Score = 31.9 bits (72), Expect = 1.6
Identities = 14/42 (33%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQ 41
+K L+K +LK+ + H+ +ER++L + + ++V L++SFQ
Sbjct: 25 VKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQ 66
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 142 bits (360), Expect = 7e-38
Identities = 80/289 (27%), Positives = 116/289 (40%), Gaps = 80/289 (27%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIY-------KCVGAFGEVTLVRKIDTNHLYVMKGSPH- 594
G FG+V LVR+ LYV+K I + A EV +++K+ NH ++K +
Sbjct: 11 GSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKL--NHPNIIK---YY 65
Query: 595 ------NNLYFVMDYIPGGDLMSLLIKKGI-----FEEPLARFYIAELTCAVESVHKMGF 643
L VM+Y GGDL IKK F E + +L A++ +H
Sbjct: 66 ESFEEKGKLCIVMEYADGGDLSQK-IKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKI 124
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
+HRDIKP NI + +G +KL DFG+ SK S D
Sbjct: 125 LHRDIKPQNIFLTSNGLVKLGDFGI---------SKVLSSTVD----------------- 158
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI 763
LA ++VGTP Y++PE+ Y D WS+G +
Sbjct: 159 --------------------------LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCV 192
Query: 764 LYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQL 812
LYE+ PF E K++ + P +Q S E +L+ L
Sbjct: 193 LYELCTLKHPFEGENLLELALKILK---GQYPPIPSQYSSELRNLVSSL 238
Score = 42.9 bits (102), Expect = 4e-04
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 87 LYAMKTLRKADVLKRNQVAHVKAER--DILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG 144
LY +K + D+ ++ A IL + ++ ++K Y SF++K L VM+Y G
Sbjct: 27 LYVLK---EIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADG 83
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 142 bits (360), Expect = 1e-37
Identities = 95/329 (28%), Positives = 149/329 (45%), Gaps = 94/329 (28%)
Query: 543 GVFGEVTLVRKI---DTNHLYVMKTIYKCVGAFGEVTLVRKIDTNH--------LYVMKG 591
G +G+V LVRK+ D+ LY MK + K T+V+K T L ++
Sbjct: 11 GAYGKVFLVRKVSGHDSGKLYAMKVLKK-------ATIVQKAKTTEHTRTERQVLEHIRQ 63
Query: 592 SP-----------HNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHK 640
SP L+ ++DYI GG+L + L ++ F+E + Y E+ A+E +HK
Sbjct: 64 SPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHK 123
Query: 641 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWS 700
+G I+RDIK +NIL+D +GH+ LTDFGL F +
Sbjct: 124 LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVER--------------------- 162
Query: 701 QGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL--RTGYTQLCDWW 758
A+S GT Y+AP+++ G+ + DWW
Sbjct: 163 ------------------------------AYSFCGTIEYMAPDIVRGGDGGHDKAVDWW 192
Query: 759 SVGVILYEMLVGSPPFLA----NTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLC- 813
S+GV++YE+L G+ PF N+ AE +++ E P ++S D+I +L
Sbjct: 193 SMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP----PYPQEMSALAKDIIQRLLM 248
Query: 814 TGADKRLG---KNASEVKAHPFFSNVDFE 839
KRLG +A E+K HPFF ++++
Sbjct: 249 KDPKKRLGCGPSDADEIKKHPFFQKINWD 277
Score = 51.9 bits (124), Expect = 6e-07
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 83 DTNHLYAMKTLRKADVLKRNQVA-HVKAERDILAEA-DNEWVVKLYYSFQDKDNLYFVMD 140
D+ LYAMK L+KA ++++ + H + ER +L + ++V L+Y+FQ L+ ++D
Sbjct: 26 DSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLILD 85
Query: 141 YIPGEKLIPYPS 152
YI G +L + S
Sbjct: 86 YINGGELFTHLS 97
Score = 37.3 bits (86), Expect = 0.026
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
Query: 453 FIKIKPIGVGAFGEVTLVRKI---DTNHLYAMKTIYKCVGAFGEVTLVRKIDT 502
F +K +G GA+G+V LVRK+ D+ LYAMK + K T+V+K T
Sbjct: 2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKK-------ATIVQKAKT 47
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 143 bits (362), Expect = 1e-37
Identities = 108/392 (27%), Positives = 172/392 (43%), Gaps = 115/392 (29%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKID------------TNHLYVMK 590
G + +V LV T +Y MK I K + V ID +NH +++
Sbjct: 6 GSYAKVLLVELKKTRRIYAMKVIKKEL-----VNDDEDIDWVQTEKHVFETASNHPFLVG 60
Query: 591 ----GSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHR 646
+ L+FV++++ GGDLM + ++ E ARFY AE++ A+ +H+ G I+R
Sbjct: 61 LHSCFQTESRLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYR 120
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQ--GTP 704
D+K DN+L+D +GHIKLTD+G+C ++ + P + S GTP
Sbjct: 121 DLKLDNVLLDAEGHIKLTDYGMC--------------------KEGIRPGDTTSTFCGTP 160
Query: 705 GQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL 764
NYIAPE+L Y DWW++GV++
Sbjct: 161 ----------------------------------NYIAPEILRGEDYGFSVDWWALGVLM 186
Query: 765 YEMLVGSPPFLANTSAETQ--------YKVINWESCLHIPAEAQLSPEGADLILQ-LCTG 815
+EM+ G PF ++ ++VI E + IP LS + + ++ L
Sbjct: 187 FEMMAGRSPFDIVGMSDNPDQNTEDYLFQVI-LEKQIRIP--RSLSVKASSVLKGFLNKD 243
Query: 816 ADKRLGKNA----SEVKAHPFFSNVDFEK-GVRTLTPPHIPRIQNSMDTSNFD------- 863
+RLG + ++K+HPFF N+D++ + + PP+ P I++ D NFD
Sbjct: 244 PKERLGCHPQTGFRDIKSHPFFRNIDWDLLEQKQVLPPYKPNIESDRDLDNFDPQFTDEP 303
Query: 864 ----PVDPDKLRNSDSMLDELSDELKSPFHGF 891
P DPD + D +S F GF
Sbjct: 304 VQLTPDDPDVIARID----------QSEFEGF 325
Score = 45.2 bits (107), Expect = 1e-04
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNE-WVVKLYYSFQDKDNLYF 137
+ L T +YAMK ++K V + V+ E+ + A N ++V L+ FQ + L+F
Sbjct: 14 VELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFF 73
Query: 138 VMDYIPGEKLI 148
V++++ G L+
Sbjct: 74 VIEFVSGGDLM 84
Score = 30.6 bits (69), Expect = 4.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
IG G++ +V LV T +YAMK I K
Sbjct: 3 IGRGSYAKVLLVELKKTRRIYAMKVIKK 30
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 139 bits (353), Expect = 2e-37
Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 67/238 (28%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVG------AFGEVTLVRKIDTNHLYVMK----GS 592
G FG V L R T +K I K E+ +++K+ NH ++K
Sbjct: 4 GGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL--NHPNIVKLYGVFE 61
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKK-GIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
N+LY VM+Y GG L LL + G E + ++ +E +H G IHRD+KP+
Sbjct: 62 DENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPE 121
Query: 652 NILID-RDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
NIL+D +G +KL DFGL
Sbjct: 122 NILLDSDNGKVKLADFGLS----------------------------------------- 140
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEM 767
+ + L ++VGTP Y+APEVLL + Y++ D WS+GVILYE+
Sbjct: 141 -----------KLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL 187
Score = 46.1 bits (110), Expect = 3e-05
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 139
R T A+K ++K D + + E +IL + ++ +VKLY F+D+++LY VM
Sbjct: 13 RDKKTGKKVAIKIIKKEDSSSLLE--ELLREIEILKKLNHPNIVKLYGVFEDENHLYLVM 70
Query: 140 DYIPG 144
+Y G
Sbjct: 71 EYCEG 75
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 141 bits (358), Expect = 2e-37
Identities = 88/331 (26%), Positives = 132/331 (39%), Gaps = 80/331 (24%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC--------VGAFGEVTLVRKIDTNHLYVMKGSPH 594
G FGEV + T +Y K + K A E ++ K+ + + + +
Sbjct: 4 GGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFE 63
Query: 595 --NNLYFVMDYIPGGDLMSLLIKKG--IFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
++L VM + GGDL + G F E A FY A++ C +E +H+ ++RD+KP
Sbjct: 64 TKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKP 123
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
+N+L+D G+++++D GL E G
Sbjct: 124 ENVLLDDHGNVRISDLGLAV---------------------------ELKGGKK------ 150
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
GTP Y+APEVL Y DW+++G LYEM+ G
Sbjct: 151 --------------------IKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAG 190
Query: 771 SPPFLANTSAETQYKVINWE---SCLHIPAEAQ--LSPEGADLILQ-LCTGADKRLG--- 821
PF KV E L + E SPE DL L +KRLG
Sbjct: 191 RSPFRQRKE-----KVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRG 245
Query: 822 KNASEVKAHPFFSNVDFEK-GVRTLTPPHIP 851
+A EV+ HP F ++++ + L PP IP
Sbjct: 246 GSADEVREHPLFKDLNWRRLEAGMLEPPFIP 276
Score = 46.3 bits (110), Expect = 3e-05
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 139
++ T +YA K L K + KR E+ IL + + ++V L Y+F+ KD+L VM
Sbjct: 13 QVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVM 72
Query: 140 DYIPG 144
+ G
Sbjct: 73 TLMNG 77
Score = 32.9 bits (75), Expect = 0.62
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
+G G FGEV + T +YA K + K
Sbjct: 1 LGKGGFGEVCACQVKATGKMYACKKLDK 28
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 137 bits (346), Expect = 3e-35
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 730 LAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINW 789
A+S+VG+P+Y+APEVL GY D+WS+G +LYE L G PPF +T ET + W
Sbjct: 154 YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYW 213
Query: 790 ESCLHIP----AEAQLSPEGADLILQLCTGADKRLGKNASEVKAHPFFSNVDFEKGVRTL 845
+ L P LS E DLI +L +R G + ++K HPFF VD+ + +R L
Sbjct: 214 KETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFG-SLEDIKNHPFFKEVDWNE-LREL 271
Query: 846 TPPHIPRIQNSMDTSNFD 863
PP +P +++ +DT FD
Sbjct: 272 KPPFVPELESEIDTGYFD 289
Score = 132 bits (335), Expect = 7e-34
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 17/157 (10%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
G +G+V L +K DT + +K + K L + + H+ + I + V
Sbjct: 12 GGYGQVFLAKKKDTGEIVALKRMKK-------SLLFKLNEVRHVLTERDILTTTKSEWLV 64
Query: 576 TLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAV 635
L LY + LY M+Y+PGGD +LL G+ E ARFY+AE+ AV
Sbjct: 65 KL--------LYAFQDD--EYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAV 114
Query: 636 ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGF 672
+++H++G+IHRD+KP+N LID GHIKLTDFGL G
Sbjct: 115 DALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGI 151
Score = 87.8 bits (218), Expect = 1e-18
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 83 DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYI 142
DT + A+K ++K+ + K N+V HV ERDIL +EW+VKL Y+FQD + LY M+Y+
Sbjct: 24 DTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYV 83
Query: 143 PG 144
PG
Sbjct: 84 PG 85
Score = 61.3 bits (149), Expect = 6e-10
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFILVGLWVNTMEY 57
+K ++K+ + K N+V HV ERDIL +EW+VKL Y+FQ D ++ + MEY
Sbjct: 31 LKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLA-----MEY 82
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 135 bits (342), Expect = 7e-35
Identities = 109/385 (28%), Positives = 171/385 (44%), Gaps = 101/385 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK-CVGAFGEVTLVR------KIDTNHLYVMK----G 591
G + +V LVR T +Y MK + K V ++ V+ + +NH +++
Sbjct: 6 GSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF 65
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+ L+FV++Y+ GGDLM + ++ E ARFY AE++ A+ +H+ G I+RD+K D
Sbjct: 66 QTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLD 125
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
N+L+D +GHIKLTD+G+C ++ + P + S
Sbjct: 126 NVLLDSEGHIKLTDYGMC--------------------KEGLRPGDTTS----------- 154
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
+ GTPNYIAPE+L Y DWW++GV+++EM+ G
Sbjct: 155 ---------------------TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGR 193
Query: 772 PPFLANTSAETQ--------YKVINWESCLHIPAEAQLSPEGADLILQLCTGADK-RLG- 821
PF S++ ++VI E + IP LS + A ++ K RLG
Sbjct: 194 SPFDIVGSSDNPDQNTEDYLFQVI-LEKQIRIP--RSLSVKAASVLKSFLNKDPKERLGC 250
Query: 822 ---KNASEVKAHPFFSNVDFE-KGVRTLTPPHIPRIQNSMDTSNFD-----------PVD 866
++++ HPFF NVD++ + + PP P I NFD P D
Sbjct: 251 HPQTGFADIQGHPFFRNVDWDLMEQKQVVPPFKPNISGEFGLDNFDAQFTNEPVQLTPDD 310
Query: 867 PDKLRNSDSMLDELSDELKSPFHGF 891
D +R D +S F GF
Sbjct: 311 DDIVRKID----------QSEFEGF 325
Score = 45.4 bits (107), Expect = 8e-05
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNE-WVVKLYYSFQDKDNLYF 137
+RL T +YAMK ++K V + V+ E+ + +A N ++V L+ FQ + L+F
Sbjct: 14 VRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 73
Query: 138 VMDYIPGEKLI 148
V++Y+ G L+
Sbjct: 74 VIEYVNGGDLM 84
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 128 bits (325), Expect = 3e-33
Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 62/265 (23%)
Query: 573 GEVTLVRKIDTNHLYVMK--GS--PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYI 628
E+ L++ + H ++K GS ++LY +++Y G L ++ K G F E L Y+
Sbjct: 48 QEIDLLKNL--KHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYV 105
Query: 629 AELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHG 688
++ + +H+ G IHRDIK NIL +DG +KL DFG+ T + N
Sbjct: 106 YQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVAT-----------KLNDVSK 154
Query: 689 RQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR 748
S+VGTP ++APEV+
Sbjct: 155 -----------------------------------------DDASVVGTPYWMAPEVIEM 173
Query: 749 TGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADL 808
+G + D WS+G + E+L G+PP+ ++++ + H P +SPE D
Sbjct: 174 SGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDD---HPPLPEGISPELKDF 230
Query: 809 ILQLCTGADKRLGKNASEVKAHPFF 833
L C D L A ++ HP+
Sbjct: 231 -LMQCFQKDPNLRPTAKQLLKHPWI 254
Score = 39.9 bits (94), Expect = 0.003
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 82 IDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDY 141
++T A+K + +K + + E D+L + +VK S + D+LY +++Y
Sbjct: 22 LETGDFVAIKQISLEK-IKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY 80
Query: 142 I 142
Sbjct: 81 A 81
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 130 bits (329), Expect = 3e-33
Identities = 106/375 (28%), Positives = 170/375 (45%), Gaps = 83/375 (22%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCV--------GAFGEVTLVRKIDTNHLYVMKGS-- 592
G + +V LVR + +Y MK + K + E + + +N V S
Sbjct: 6 GSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCF 65
Query: 593 -PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+ L+ V++Y+ GGDLM + ++ E ARFY AE+ A+ +H+ G I+RD+K D
Sbjct: 66 QTTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLD 125
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
N+L+D DGHIKLTD+G+C ++ + P + S
Sbjct: 126 NVLLDADGHIKLTDYGMC--------------------KEGLGPGDTTS----------- 154
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
+ GTPNYIAPE+L Y DWW++GV+++EM+ G
Sbjct: 155 ---------------------TFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGR 193
Query: 772 PPFLANT------SAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADK-RLG--- 821
PF T + + ++VI E + IP LS + + ++ K RLG
Sbjct: 194 SPFDIITDNPDMNTEDYLFQVI-LEKPIRIP--RFLSVKASHVLKGFLNKDPKERLGCQP 250
Query: 822 -KNASEVKAHPFFSNVDFEK-GVRTLTPPHIPRIQNSMDTSNFD---PVDPDKLRNSDSM 876
S++K+H FF ++D++ + +TPP P+I + NFD +P +L D
Sbjct: 251 QTGFSDIKSHTFFRSIDWDLLEKKQVTPPFKPQITDDYGLENFDTQFTSEPVQLTPDDED 310
Query: 877 LDELSDELKSPFHGF 891
+ + D+ S F GF
Sbjct: 311 VIKRIDQ--SEFEGF 323
Score = 40.4 bits (94), Expect = 0.003
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEAD-NEWVVKLYYSFQDKDNLYF 137
+RL + +YAMK ++K V + V+ E+ + +A N ++V L+ FQ L+
Sbjct: 14 VRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFL 73
Query: 138 VMDYIPGEKLI 148
V++Y+ G L+
Sbjct: 74 VIEYVNGGDLM 84
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 129 bits (326), Expect = 8e-33
Identities = 110/374 (29%), Positives = 157/374 (41%), Gaps = 81/374 (21%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRK----IDTNH-----LYVMK 590
G FG+V L R ++ LY +K + K V E T+ K + NH LY
Sbjct: 6 GSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCF 65
Query: 591 GSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+P + L+FVM+++ GGDLM + K F+E ARFY AE+T A+ F+H
Sbjct: 66 QTP-DRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEITSALM------FLH----- 113
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
D +I RD +KL + L DH E C
Sbjct: 114 DKGIIYRD--LKLDNVLL-----------------DH-------------------EGHC 135
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
L + + GTP+YIAPE+L Y DWW++GV+LYEML G
Sbjct: 136 ---KLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCG 192
Query: 771 SPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCT-GADKRLGKNA----S 825
PF A + ++N E + LS + D++ T RLG
Sbjct: 193 HAPFEAENEDDLFEAILNDE----VVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEE 248
Query: 826 EVKAHPFFSNVDFEK-GVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNSDSMLDELSDEL 884
+ HPFF +D+EK R + PP PRI++ D SNFDP D +L + + L
Sbjct: 249 AILRHPFFKELDWEKLNRRQIEPPFRPRIKSREDVSNFDP----DFIKEDPVLTPIEESL 304
Query: 885 KSPFH--GFFEFTF 896
+ F F++
Sbjct: 305 LPMINQDEFRNFSY 318
Score = 50.3 bits (120), Expect = 2e-06
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNE-WVVKLYYSFQDKDNLYFV 138
RL ++ LYA+K L+K +L+ + V E+ IL+ A N ++ +LY FQ D L+FV
Sbjct: 15 RLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFV 74
Query: 139 MDYIPGEKLI 148
M+++ G L+
Sbjct: 75 MEFVNGGDLM 84
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 127 bits (320), Expect = 2e-32
Identities = 96/328 (29%), Positives = 147/328 (44%), Gaps = 74/328 (22%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC--------VGAFGE---VTLVRKIDTNHLYVMKG 591
G FGEV RK DT +Y MK + K A E ++LV D + M
Sbjct: 5 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSY 64
Query: 592 SPH--NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
+ H + L F++D + GGDL L + G+F E RFY AE+ +E +H ++RD+K
Sbjct: 65 AFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLK 124
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P NIL+D GH++++D GL F
Sbjct: 125 PANILLDEHGHVRISDLGLACDF------------------------------------- 147
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEML 768
S KP H+ VGT Y+APEVL + Y DW+S+G +L+++L
Sbjct: 148 ---SKKKP--------------HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 190
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLC-TGADKRL---GKNA 824
G PF + + + ++++ + + SPE L+ L ++RL G+ A
Sbjct: 191 RGHSPFRQHKTKD-KHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGA 249
Query: 825 SEVKAHPFFSNVDFEK-GVRTLTPPHIP 851
EVK HPFF ++D++ ++ PP IP
Sbjct: 250 QEVKEHPFFRSLDWQMVFLQKYPPPLIP 277
Score = 35.7 bits (82), Expect = 0.098
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILA---EADNEWVVKLYYSFQDKDNLY 136
R DT +YAMK L K + + ER +L+ D ++V + Y+F D L
Sbjct: 14 RKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 73
Query: 137 FVMDYIPGEKL 147
F++D + G L
Sbjct: 74 FILDLMNGGDL 84
Score = 35.3 bits (81), Expect = 0.11
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
IG G FGEV RK DT +YAMK + K
Sbjct: 2 IGRGGFGEVYGCRKADTGKMYAMKCLDK 29
Score = 29.9 bits (67), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 489 GAFGEVTLVRKIDTNHLYVMKTIYK 513
G FGEV RK DT +Y MK + K
Sbjct: 5 GGFGEVYGCRKADTGKMYAMKCLDK 29
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 120 bits (304), Expect = 2e-30
Identities = 87/310 (28%), Positives = 126/310 (40%), Gaps = 77/310 (24%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAF--GEVTLVRKIDTNHLYVMKGSPHNNL--- 597
G FG+V +DT L +K I + +++I + + V++ H NL
Sbjct: 11 GTFGKVYTAVNLDTGELMAVKEI-----RIQDNDPKTIKEI-ADEMKVLELLKHPNLVKY 64
Query: 598 ----------YFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
Y M+Y GG L LL I +E + R Y +L + +H G +HRD
Sbjct: 65 YGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRD 124
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQE 707
IKP NI +D +G IKL DFG + ++N + G Q
Sbjct: 125 IKPANIFLDHNGVIKLGDFG---------CAVKLKNNTT-------------TMGEEVQ- 161
Query: 708 CRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT---GYTQLCDWWSVGVIL 764
SL GTP Y+APEV+ G+ + D WS+G ++
Sbjct: 162 -------------------------SLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVV 196
Query: 765 YEMLVGSPPFLANTSAETQ--YKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGK 822
EM G P+ + E Q + V IP QLSPEG D + + C +D +
Sbjct: 197 LEMATGKRPW-SELDNEFQIMFHVGAGH-KPPIPDSLQLSPEGKDFLDR-CLESDPKKRP 253
Query: 823 NASEVKAHPF 832
ASE+ HPF
Sbjct: 254 TASELLQHPF 263
Score = 32.3 bits (74), Expect = 0.93
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTI 484
IG G FG+V +DT L A+K I
Sbjct: 8 IGGGTFGKVYTAVNLDTGELMAVKEI 33
Score = 29.6 bits (67), Expect = 6.8
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 82 IDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ-DKDNLYFVMD 140
+DT L A+K +R D + + E +L + +VK YY + ++ +Y M+
Sbjct: 22 LDTGELMAVKEIRIQD-NDPKTIKEIADEMKVLELLKHPNLVK-YYGVEVHREKVYIFME 79
Query: 141 Y 141
Y
Sbjct: 80 Y 80
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 120 bits (303), Expect = 2e-30
Identities = 65/264 (24%), Positives = 96/264 (36%), Gaps = 82/264 (31%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
G FGEV R T G+ ++ I + I E+
Sbjct: 11 GGFGEVYKARHKRT----------------GKEVAIKVIKLESKEKKEKIIN------EI 48
Query: 576 TLVRKIDTNHLYVMK--GS--PHNNLYFVMDYIPGGDLMSLL-IKKGIFEEPLARFYIAE 630
+++K H ++K GS + L+ VM++ GG L LL E + E
Sbjct: 49 QILKKC--KHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKE 106
Query: 631 LTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQ 690
L +E +H G IHRDIK NIL+ DG +KL DFGL
Sbjct: 107 LLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSA-------------------- 146
Query: 691 DSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG 750
Q + + +++VGTP ++APEV+
Sbjct: 147 ----------QLSDTKAR-----------------------NTMVGTPYWMAPEVINGKP 173
Query: 751 YTQLCDWWSVGVILYEMLVGSPPF 774
Y D WS+G+ E+ G PP+
Sbjct: 174 YDYKADIWSLGITAIELAEGKPPY 197
Score = 31.4 bits (72), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 110 ERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG 144
E IL + + +VK Y S+ KD L+ VM++ G
Sbjct: 47 EIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSG 81
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 120 bits (302), Expect = 4e-30
Identities = 96/329 (29%), Positives = 143/329 (43%), Gaps = 78/329 (23%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC--------VGAFGE---VTLVRKIDTNHLYVMKG 591
G FGEV RK DT +Y MK + K A E ++LV D + M
Sbjct: 5 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTY 64
Query: 592 SPH--NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
+ H + L F++D + GGDL L + G+F E RFY E+ +E +H ++RD+K
Sbjct: 65 AFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLK 124
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P NIL+D GH++++D GL F
Sbjct: 125 PANILLDEHGHVRISDLGLACDF------------------------------------- 147
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEML 768
S KP H+ VGT Y+APEVL + T Y DW+S+G +L+++L
Sbjct: 148 ---SKKKP--------------HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLL 190
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCT-GADKRL---GKNA 824
G PF + + + ++++ +++ SPE L+ L KRL G+ A
Sbjct: 191 RGHSPFRQHKTKD-KHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGA 249
Query: 825 SEVKAHPFFSNVDF-----EKGVRTLTPP 848
EVK H FF +D+ +K L PP
Sbjct: 250 QEVKEHVFFKGIDWQQVYLQKYPPPLIPP 278
Score = 35.0 bits (80), Expect = 0.15
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAER---DILAEADNEWVVKLYYSFQDKDNLY 136
R DT +YAMK L K + + ER +++ D ++V + Y+F D L
Sbjct: 14 RKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLC 73
Query: 137 FVMDYIPGEKL 147
F++D + G L
Sbjct: 74 FILDLMNGGDL 84
Score = 33.8 bits (77), Expect = 0.34
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
IG G FGEV RK DT +YAMK + K
Sbjct: 2 IGRGGFGEVYGCRKADTGKMYAMKCLDK 29
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 116 bits (292), Expect = 1e-28
Identities = 70/263 (26%), Positives = 102/263 (38%), Gaps = 70/263 (26%)
Query: 588 VMKGSPHNN-------------LYFVMDYIPGGDLMSLLI-KKGIFEEPLARFYIAELTC 633
+MK H N L+ VM+Y+ GG L ++ EP + E+
Sbjct: 68 IMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQ 127
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSM 693
+E +H IHRDIK DNIL+ +DG +KL DFG
Sbjct: 128 GLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAA----------------------- 164
Query: 694 EPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQ 753
Q T + R +S+VGTP ++APEV+ R Y
Sbjct: 165 -------QLTKEKSKR----------------------NSVVGTPYWMAPEVIKRKDYGP 195
Query: 754 LCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQ-L 812
D WS+G++ EM G PP+L + I + + + SPE D + + L
Sbjct: 196 KVDIWSLGIMCIEMAEGEPPYLREPPLRALFL-ITTKGIPPLKNPEKWSPEFKDFLNKCL 254
Query: 813 CTGADKRLGKNASEVKAHPFFSN 835
+KR +A E+ HPF
Sbjct: 255 VKDPEKR--PSAEELLQHPFLKK 275
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 115 bits (290), Expect = 1e-28
Identities = 73/278 (26%), Positives = 106/278 (38%), Gaps = 84/278 (30%)
Query: 534 VMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKID-TNHLYVMKGS 592
V++TI K G FG V VR+ + V K I +G +T K + + +++
Sbjct: 4 VLETIGK--GSFGTVRKVRRKSDGKILVWKEI-----DYGNMTEKEKQQLVSEVNILREL 56
Query: 593 PHNN---------------LYFVMDYIPGGDLMSLLIK----KGIFEEPLARFYIAELTC 633
H N LY VM+Y GGDL L+ K + EE + +L
Sbjct: 57 KHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLL 116
Query: 634 AVESVH-----KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHG 688
A+ H +HRD+KP NI +D + ++KL DFGL
Sbjct: 117 ALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLA------------------- 157
Query: 689 RQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR 748
K L H A + VGTP Y++PE L
Sbjct: 158 ---------------------------KILG------HDSSFAKTYVGTPYYMSPEQLNH 184
Query: 749 TGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKV 786
Y + D WS+G ++YE+ SPPF A + K+
Sbjct: 185 MSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKI 222
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 112 bits (282), Expect = 1e-27
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 15/146 (10%)
Query: 535 MKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKC-VGAFGEVTLVRKIDTNHLYVMKGSP 593
+K I K G FG V L +K T + +K + K + A +VT V+ + + SP
Sbjct: 1 LKPISK--GAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAI-MMIQGESP 57
Query: 594 H-----------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMG 642
+ + LY VM+Y+ GGD SL+ G E A+ YIAE+ VE +H+ G
Sbjct: 58 YVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRG 117
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGL 668
IHRDIKP+N+LID+ GH+KLTDFGL
Sbjct: 118 IIHRDIKPENLLIDQTGHLKLTDFGL 143
Score = 112 bits (281), Expect = 2e-27
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 734 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTS----AETQYKVINW 789
VGTP+Y+APE +L G ++ DWWS+G +++E L G PPF A T + INW
Sbjct: 153 FVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINW 212
Query: 790 ESCLHIPAEAQLSPEGADLILQL-CTGADKRLGKN-ASEVKAHPFFSNVDFE 839
+ SPE DLI +L C KRLG N E+K+HPFF +++++
Sbjct: 213 ----PEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFKSINWD 260
Score = 75.6 bits (186), Expect = 6e-15
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDIL-AEADNEWVVKLYYSFQDKDNLYFVMDYI 142
T +A+K L+K+D++ +NQV +VKAER I+ + ++ +V KLYYSFQ KD LY VM+Y+
Sbjct: 20 TGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYL 79
Query: 143 PG 144
G
Sbjct: 80 NG 81
Score = 51.3 bits (123), Expect = 6e-07
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 8/59 (13%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDIL-AEADNEWVVKLYYSFQ-GDIFILVGLWVNTMEY 57
+K L+K+D++ +NQV +VKAER I+ + ++ +V KLYYSFQ D LV MEY
Sbjct: 26 IKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLV------MEY 78
Score = 33.6 bits (77), Expect = 0.39
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 456 IKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
+KPI GAFG V L +K T +A+K + K
Sbjct: 1 LKPISKGAFGSVYLAKKRSTGDYFAIKVLKK 31
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 114 bits (286), Expect = 1e-27
Identities = 59/155 (38%), Positives = 82/155 (52%), Gaps = 18/155 (11%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
G FG+V VRK DT +Y MK + K +V K + H + I
Sbjct: 4 GTFGQVYQVRKKDTRRIYAMKVLSKKE-------IVAKKEVAHTIGERNILVRTLL---- 52
Query: 576 TLVRKIDTNHLYVMKGS--PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTC 633
++ + +K S ++LY V DY+ GG+L L K+G F E A+FYIAEL
Sbjct: 53 -----DESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYIAELVL 107
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
A+E +HK ++RD+KP+NIL+D GHI L DFGL
Sbjct: 108 ALEHLHKYDIVYRDLKPENILLDATGHIALCDFGL 142
Score = 91.9 bits (228), Expect = 5e-20
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 730 LAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVIN 788
++ GT Y+APEVLL GYT+ D+WS+GV+++EM G PF A + + Y+ I
Sbjct: 152 TTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQ-MYRNIA 210
Query: 789 WESCLHIPAEAQLSPEGADLILQLCT-GADKRLG--KNASEVKAHPFFSNVDFEK-GVRT 844
+ + P LS EG + L RLG ++A E+K HPFF+++D++ +
Sbjct: 211 FGK-VRFPKNV-LSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDWDLLSKKQ 268
Query: 845 LTPPHIPRIQNSMDTSNFDP 864
+TPP P + + D SNFDP
Sbjct: 269 ITPPFKPIVDSDEDVSNFDP 288
Score = 62.6 bits (152), Expect = 3e-10
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 78 EIRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDIL---AEADNEWVVKLYYSFQDKDN 134
++R DT +YAMK L K +++ + +VAH ER+IL ++ ++V L +SFQ +
Sbjct: 11 QVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSD 70
Query: 135 LYFVMDYIPGEKL 147
LY V DY+ G +L
Sbjct: 71 LYLVTDYMSGGEL 83
Score = 42.2 bits (99), Expect = 0.001
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFGEVTLVRKIDTNHLYVMKTIYKC 514
IG G FG+V VRK DT +YAMK + K +V K + H + I
Sbjct: 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKE-------IVAKKEVAHTIGERNILVR 49
Score = 35.7 bits (82), Expect = 0.091
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDIL---AEADNEWVVKLYYSFQGD 43
MK L K +++ + +VAH ER+IL ++ ++V L +SFQ D
Sbjct: 23 MKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTD 68
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 113 bits (284), Expect = 2e-27
Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 20/155 (12%)
Query: 736 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHI 795
GTP+YIAPE+L Y DWW++GV+LYEML G PF + E ++ E +
Sbjct: 158 GTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDE--VRY 215
Query: 796 PAEAQLSPEGADLILQLCT-GADKRLG---KNASEVKAHPFFSNVDFEK-GVRTLTPPHI 850
P LS E ++ T +KRLG ++K HPFF +D++K + + PP
Sbjct: 216 P--RWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWDKLERKEIKPPFK 273
Query: 851 PRIQNSMDTSNFD-----------PVDPDKLRNSD 874
P+I+ D SNFD P D +RN D
Sbjct: 274 PKIKGRFDVSNFDDEFTKEKPVLTPPDEAIIRNID 308
Score = 110 bits (277), Expect = 2e-26
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 19/142 (13%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRKIDTNHLYVMKGSP------ 593
G FG+V L T+ LY +K + K V E T+ K + + G
Sbjct: 6 GSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEK----RVLALAGKHPFLTQL 61
Query: 594 ------HNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
+ L+FVM+Y+ GGDLM + + G F+EP ARFY AE+ ++ +H+ G I+RD
Sbjct: 62 HSCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRD 121
Query: 648 IKPDNILIDRDGHIKLTDFGLC 669
+K DN+L+D +GHIK+ DFG+C
Sbjct: 122 LKLDNVLLDSEGHIKIADFGMC 143
Score = 60.1 bits (146), Expect = 2e-09
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNE-WVVKLYYSFQDKDNLYFV 138
L T+ LYA+K L+K +L+ + V E+ +LA A ++ +L+ FQ KD L+FV
Sbjct: 15 ELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFV 74
Query: 139 MDYIPGEKLI 148
M+Y+ G L+
Sbjct: 75 MEYVNGGDLM 84
Score = 32.7 bits (75), Expect = 0.70
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 457 KPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCV 488
K +G G+FG+V L T+ LYA+K + K V
Sbjct: 1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDV 32
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 110 bits (277), Expect = 8e-27
Identities = 82/311 (26%), Positives = 121/311 (38%), Gaps = 88/311 (28%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGSPHN-NLYF-- 599
G FG+V++++ T L+V K I + I+ +MK +P+ LY+
Sbjct: 27 GKFGKVSVLKHKPTQKLFVQKII--------KAKNFNAIEPMVHQLMKDNPNFIKLYYSV 78
Query: 600 --------VMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+MDYI GDL LL K+G E + I +L A+ +HK IH DIK +
Sbjct: 79 TTLKGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLE 138
Query: 652 NILIDR-DGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
N+L DR I L D+GL C+
Sbjct: 139 NVLYDRAKDRIYLCDYGL---------------------------------------CKI 159
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
I +P GT +Y +PE + Y DWW+VGV+ YE+L G
Sbjct: 160 IGTPS-----------------CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTG 202
Query: 771 SPPFLANTSAETQYKVINWESCL-----HIPAEAQLSPEGADLILQ-LCTGADKRLGKNA 824
PF E + + ++ ES L +P +S D + L + RL N
Sbjct: 203 KHPF-----KEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRL-TNY 256
Query: 825 SEVKAHPFFSN 835
+E+ HPF
Sbjct: 257 NEIIKHPFLKI 267
Score = 33.7 bits (78), Expect = 0.39
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 117 ADNEWVVKLYYSFQDKDNLYFVMDYIPG 144
DN +KLYYS +MDYI
Sbjct: 66 KDNPNFIKLYYSVTTLKGHVLIMDYIKD 93
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 113 bits (282), Expect = 8e-27
Identities = 93/382 (24%), Positives = 147/382 (38%), Gaps = 84/382 (21%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG--------EVTLVRKIDTNHLYVMK---- 590
G FGEV L R L +K + K + + E+ ++ ++ + ++K
Sbjct: 11 GSFGEVYLARD---RKLVALKVLAKKLESKSKEVERFLREIQILASLN-HPPNIVKLYDF 66
Query: 591 GSPHNNLYFVMDYIPGGDLMSLL---IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
+LY VM+Y+ GG L LL +KG E A F +A++ A+E +H G IHRD
Sbjct: 67 FQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRD 126
Query: 648 IKPDNILIDRDGH-IKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
IKP+NIL+DRDG +KL DFGL
Sbjct: 127 IKPENILLDRDGRVVKLIDFGLA------------------------------------- 149
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG---YTQLCDWWSVGVI 763
K L L + VGTP Y+APEVLL + D WS+G+
Sbjct: 150 ---------KLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGIT 200
Query: 764 LYEMLVGSPPFLANTS----AETQYKVINWESCLHIPA-----EAQLSPEGADLILQLCT 814
LYE+L G PPF + ++T ++ + +S +DL+ +L
Sbjct: 201 LYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLA 260
Query: 815 G-ADKRLGKNASEVKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFDPVDPDKLRNS 873
RL ++S +H + K + + ++ + P + +
Sbjct: 261 KDPKNRL--SSSSDLSHDLLA---HLKLKESDLSDLLKPDDSAPLRLSLPPSLEALISSL 315
Query: 874 DSMLDELSDELKSPFHGFFEFT 895
+S+ SD + E
Sbjct: 316 NSLAISGSDLKLDDSNFSKELA 337
Score = 46.3 bits (108), Expect = 5e-05
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 85 NHLYAMKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFVMDYIP 143
L A+K L K K +V E ILA +VKLY FQD+ +LY VM+Y+
Sbjct: 22 RKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVD 81
Query: 144 GEKL 147
G L
Sbjct: 82 GGSL 85
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 109 bits (273), Expect = 4e-26
Identities = 55/151 (36%), Positives = 82/151 (54%), Gaps = 23/151 (15%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKI-----------DTNHLYVMK- 590
G FG V LVR + H Y +K V A EV +++ + +H ++++
Sbjct: 12 GTFGRVHLVRDRISEHYYALK-----VMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRL 66
Query: 591 -GSPH--NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
+ H LY +M+Y+PGG+L S L G F FY +E+ CA+E +H ++RD
Sbjct: 67 FWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRD 126
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFR---WT 675
+KP+NIL+D++GHIKLTDFG R WT
Sbjct: 127 LKPENILLDKEGHIKLTDFGFAKKLRDRTWT 157
Score = 100 bits (251), Expect = 3e-23
Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 9/136 (6%)
Query: 733 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESC 792
+L GTP Y+APEV+ G+ + DWW++G+++YEMLVG PPF + K++ +
Sbjct: 157 TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGK-- 214
Query: 793 LHIPAEAQLSPEGADLILQ-LCTGADKRLG--KN-ASEVKAHPFFSNVDFEKGV-RTLTP 847
+ L DLI + L +RLG KN A +VK H +F +VD++ R L P
Sbjct: 215 --LEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDDVPQRKLKP 272
Query: 848 PHIPRIQNSMDTSNFD 863
P +P++ + DTSNFD
Sbjct: 273 PIVPKVSHDGDTSNFD 288
Score = 65.2 bits (159), Expect = 3e-11
Identities = 21/67 (31%), Positives = 42/67 (62%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
+ H YA+K + +V++ Q HV E+ +L E + ++++L+++ D+ LY +M+Y+P
Sbjct: 25 SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVP 84
Query: 144 GEKLIPY 150
G +L Y
Sbjct: 85 GGELFSY 91
Score = 35.1 bits (81), Expect = 0.13
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFILVGLWVNTMEYA 58
+K + +V++ Q HV E+ +L E + ++++L+++ F+ + MEY
Sbjct: 31 LKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYM-----LMEYV 83
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 113 bits (284), Expect = 9e-26
Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 17/153 (11%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
GAFG+V L RK + + LY +K + K + + + + + L + K+ + V
Sbjct: 15 GAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPF-IV------ 67
Query: 576 TLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAV 635
HLY S NN+Y VM+Y+ GGD+ SLL G F+E +A YI+E+ A+
Sbjct: 68 ---------HLYYSLQSA-NNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALAL 117
Query: 636 ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+ +H+ G IHRD+KPDN+LI +GHIKLTDFGL
Sbjct: 118 DYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGL 150
Score = 89.2 bits (221), Expect = 4e-18
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 20/161 (12%)
Query: 711 INSPLK-PLERRR---RREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE 766
I +P + P RR E +R L GTP+Y+APE+LL + DWW++GV L+E
Sbjct: 518 IGTPYRTPKSVRRGAAPVEGERIL-----GTPDYLAPELLLGKPHGPAVDWWALGVCLFE 572
Query: 767 MLVGSPPFLANTSAETQYKVINWESCLHIP---AEAQLSPEGADLILQLCTGAD-KRLGK 822
L G PPF T + ++N + IP E +LS + I L T KR G
Sbjct: 573 FLTGIPPFNDETPQQVFQNILNRD----IPWPEGEEKLSVNAQNAIEILLTMDPTKRAG- 627
Query: 823 NASEVKAHPFFSNVDFEKGVRTLTPPHIPRIQNSMDTSNFD 863
E+K HP F VD+E ++ T P IP+ + DTS F+
Sbjct: 628 -LKELKQHPLFHGVDWEN-LQNQTMPFIPQPDDETDTSYFE 666
Score = 64.9 bits (158), Expect = 1e-10
Identities = 28/58 (48%), Positives = 43/58 (74%)
Query: 87 LYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPG 144
LYA+K ++KAD++ +N V V+AERD LA + + ++V LYYS Q +N+Y VM+Y+ G
Sbjct: 31 LYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIG 88
Score = 46.0 bits (109), Expect = 9e-05
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 8/69 (11%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFI-LVGLWVNTMEYAL 59
+K ++KAD++ +N V V+AERD LA + + ++V LYYS Q + LV MEY +
Sbjct: 34 VKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV------MEYLI 87
Query: 60 AARVLKSIL 68
V KS+L
Sbjct: 88 GGDV-KSLL 95
Score = 37.5 bits (87), Expect = 0.031
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK 486
F+ +KPI GAFG+V L RK + + LYA+K + K
Sbjct: 6 FVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKK 39
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 106 bits (266), Expect = 2e-25
Identities = 66/247 (26%), Positives = 96/247 (38%), Gaps = 59/247 (23%)
Query: 595 NNLYFVMDYIPGG---DLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+ L+ VM Y+ GG D+M +G +E + + E+ +E +H G IHRDIK
Sbjct: 72 DELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAG 131
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
NIL+ DG +K+ DFG+ S GD
Sbjct: 132 NILLGEDGSVKIADFGV---------SASLADGGD------------------------- 157
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL-LRTGYTQLCDWWSVGVILYEMLVG 770
R+ R + VGTP ++APEV+ GY D WS G+ E+ G
Sbjct: 158 -------RTRKVR-------KTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATG 203
Query: 771 SPPFLANTSAETQYKVI-NWESCLHIPAEAQ-LSPEGADLILQLCTGAD--KRLGKNASE 826
+ P+ + + N L A+ + S +I LC D KR A E
Sbjct: 204 AAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMI-SLCLQKDPSKR--PTAEE 260
Query: 827 VKAHPFF 833
+ H FF
Sbjct: 261 LLKHKFF 267
Score = 29.2 bits (66), Expect = 8.6
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 68 LGESTTEVDNEIRLIDTNHLYAMKTLRKADVLKRN-QVAHVKAERDILAEADNEWVVKLY 126
+G T V + N A+K + D+ K V ++ E +++ ++ VVK Y
Sbjct: 9 IGVGATAVVYAAICLPNNEKVAIKRI---DLEKCQTSVDELRKEVQAMSQCNHPNVVKYY 65
Query: 127 YSFQDKDNLYFVMDYIPG 144
SF D L+ VM Y+ G
Sbjct: 66 TSFVVGDELWLVMPYLSG 83
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 106 bits (265), Expect = 3e-25
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 52/262 (19%)
Query: 573 GEVTLVRKIDTNHL--YVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAE 630
E+ L++++ ++ Y+ ++L ++Y+PGG + +LL G FEE L R ++ +
Sbjct: 55 REIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQ 114
Query: 631 LTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQ 690
+ + +H G IHRDIK NIL+D G IK++DFG+ SK ++N +
Sbjct: 115 ILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGI---------SKKLEANSLSTKT 165
Query: 691 DSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG 750
+ P SL G+ ++APEV+ +T
Sbjct: 166 NGARP-------------------------------------SLQGSVFWMAPEVVKQTS 188
Query: 751 YTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLIL 810
YT+ D WS+G ++ EML G PF T + +K+ S P A L
Sbjct: 189 YTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENAS----PEIPSNISSEAIDFL 244
Query: 811 QLCTGADKRLGKNASEVKAHPF 832
+ D A+E+ HPF
Sbjct: 245 EKTFEIDHNKRPTAAELLKHPF 266
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 106 bits (267), Expect = 4e-25
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 10/137 (7%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCV-GAFGEV--TLVRK---IDTNH--LYVMKGS-- 592
G FG+V LVR+ T Y MK + K V A EV TL +T H L +K S
Sbjct: 6 GTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQ 65
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
H+ L FVM+Y GG+L L ++ +F E ARFY AE+ A+ +H ++RD+K +N
Sbjct: 66 THDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLEN 125
Query: 653 ILIDRDGHIKLTDFGLC 669
+++D+DGHIK+TDFGLC
Sbjct: 126 LMLDKDGHIKITDFGLC 142
Score = 91.0 bits (226), Expect = 1e-19
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 736 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHI 795
GTP Y+APEVL Y + DWW +GV++YEM+ G PF N E +++I E +
Sbjct: 157 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHEKLFELILMEE-IRF 214
Query: 796 PAEAQLSPEGADLILQLCT-GADKRLG---KNASEVKAHPFFSNVDFEKGVRT-LTPPHI 850
P LSPE L+ L +RLG ++A E+ H FF++++++ V+ L PP
Sbjct: 215 P--RTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDVVQKKLEPPFK 272
Query: 851 PRIQNSMDTSNFD 863
P++ + DT FD
Sbjct: 273 PQVTSETDTRYFD 285
Score = 58.3 bits (141), Expect = 6e-09
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T YAMK L+K ++ +++VAH E +L + ++ L YSFQ D L FVM+Y
Sbjct: 19 TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYAN 78
Query: 144 GEKL 147
G +L
Sbjct: 79 GGEL 82
Score = 34.4 bits (79), Expect = 0.26
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK L+K ++ +++VAH E +L + ++ L YSFQ
Sbjct: 25 MKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQ 65
Score = 33.6 bits (77), Expect = 0.47
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 457 KPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCV 488
K +G G FG+V LVR+ T YAMK + K V
Sbjct: 1 KLLGKGTFGKVILVREKATGKYYAMKILKKEV 32
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 107 bits (267), Expect = 4e-25
Identities = 106/380 (27%), Positives = 152/380 (40%), Gaps = 102/380 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRKIDTNHLYVMKGSP------ 593
G FG+V L + T+ LY +K + K V E T+V K + + G P
Sbjct: 11 GSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEK----RVLALSGKPPFLTQL 66
Query: 594 ------HNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
+ LYFVM+Y+ GGDLM + + G F+EP A FY AE+ + +H G
Sbjct: 67 HSCFQTMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKG----- 121
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQE 707
+I RD +KL + L +S+ + D G M W T
Sbjct: 122 ------IIYRD--LKLDNVML--------DSEGHIKIADFG----MCKENMWDGVTTKTF 161
Query: 708 CRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM 767
C GTP+YIAPE++ Y + DWW+ GV+LYEM
Sbjct: 162 C---------------------------GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEM 194
Query: 768 LVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTG-ADKRLG---KN 823
L G PF E ++ ++ +S E + L T KRLG +
Sbjct: 195 LAGQAPFEGEDEDELFQSIMEH----NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEG 250
Query: 824 ASEVKAHPFFSNVDFEKGVRT-LTPPHIPRIQNSMDTSNFD-----------PVDPDKLR 871
++K H FF +D+EK R + PP+ P+ D NFD P D + +
Sbjct: 251 ERDIKEHAFFRYIDWEKLERKEVQPPYKPK-ACGRDAENFDKFFTRHPPVLTPPDQEVIM 309
Query: 872 NSDSMLDELSDELKSPFHGF 891
N D +S F GF
Sbjct: 310 NLD----------QSEFEGF 319
Score = 44.6 bits (105), Expect = 1e-04
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILA-EADNEWVVKLYYSFQDKDNLYFVMDYI 142
T+ LYA+K L+K V++ + V E+ +LA ++ +L+ FQ D LYFVM+Y+
Sbjct: 24 TDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYV 83
Query: 143 PGEKLI 148
G L+
Sbjct: 84 NGGDLM 89
Score = 29.6 bits (66), Expect = 8.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 456 IKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCV 488
+ +G G+FG+V L + T+ LYA+K + K V
Sbjct: 5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDV 37
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 104 bits (262), Expect = 1e-24
Identities = 83/336 (24%), Positives = 122/336 (36%), Gaps = 108/336 (32%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG-------EVTLVRKIDTNHLYVMK----- 590
G +G V R T + +K I G E++L++++ H ++K
Sbjct: 10 GTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKEL--KHPNIVKLLDVI 67
Query: 591 GSPHNNLYFVMDYIPGGDLMSLLIKK-GIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
+ LY V +Y DL L K+ G L + + +L + H +HRD+K
Sbjct: 68 HTE-RKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLK 125
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P NILI+RDG +KL DFGL R
Sbjct: 126 PQNILINRDGVLKLADFGL---------------------------------------AR 146
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEML 768
PL R H +V T Y APE+LL Y+ D WSVG I EM+
Sbjct: 147 AFGIPL------------RTYTHEVV-TLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMI 193
Query: 769 VGSPPFLANT---------------SAET---------------QYKVINWESCLHIPAE 798
G P F ++ + E+ ++ + E L
Sbjct: 194 TGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPR--- 250
Query: 799 AQLSPEGADLILQLCT-GADKRLGKNASEVKAHPFF 833
L PEG DL+ ++ KR+ +A E HP+F
Sbjct: 251 --LDPEGIDLLSKMLQYNPAKRI--SAKEALKHPYF 282
Score = 34.8 bits (81), Expect = 0.18
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
+ K++ +G G +G V R T + A+K I
Sbjct: 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKI 32
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 104 bits (261), Expect = 1e-24
Identities = 92/336 (27%), Positives = 133/336 (39%), Gaps = 90/336 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC--------VGAFGEVTLVRKIDTN------HLYV 588
G FGEV + T +Y K + K A E ++ K+++ + Y
Sbjct: 11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYE 70
Query: 589 MKGSPHNNLYFVMDYIPGGDLMSLLIKKGI--FEEPLARFYIAELTCAVESVHKMGFIHR 646
K + L V+ + GGDL + G F+E A FY AE+TC +E +H+ ++R
Sbjct: 71 TKDA----LCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYR 126
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
D+KP+NIL+D D+G H R + + E +G
Sbjct: 127 DLKPENILLD--------DYG-------------------HIRISDLGLAVEIPEG---- 155
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE 766
E R R VGT Y+APEV+ YT DWW +G ++YE
Sbjct: 156 ------------ETIRGR----------VGTVGYMAPEVVKNERYTFSPDWWGLGCLIYE 193
Query: 767 MLVGSPPFLANTSAETQYKVINWESCLHIPAEAQ------LSPEGADLILQ-LCTGADKR 819
M+ G PF + + + E E Q S + Q L R
Sbjct: 194 MIEGKSPF------RQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFR 247
Query: 820 LG---KNASEVKAHPFFSNVDFEK-GVRTLTPPHIP 851
LG + A EVKAHPFF +F++ L PP P
Sbjct: 248 LGCRGEGAEEVKAHPFFRTANFKRLEAGMLEPPFCP 283
Score = 41.4 bits (97), Expect = 0.001
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T +YA K L K + KR A E+ IL + ++ +VV L Y+++ KD L V+ +
Sbjct: 24 TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMN 83
Query: 144 GEKL 147
G L
Sbjct: 84 GGDL 87
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 104 bits (262), Expect = 2e-24
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 11/138 (7%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRK----IDTNHLYVMK----G 591
G FG+V L T+ +Y +K + K V + T+ K + H ++
Sbjct: 6 GSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCF 65
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+ L+FVM+Y+ GGDLM + + F+EP +RFY AE+T A+ +H+ G I+RD+K D
Sbjct: 66 QTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLD 125
Query: 652 NILIDRDGHIKLTDFGLC 669
NIL+D +GH KL DFG+C
Sbjct: 126 NILLDAEGHCKLADFGMC 143
Score = 99 bits (249), Expect = 8e-23
Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 26/163 (15%)
Query: 730 LAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINW 789
+ GTP+YIAPE+L Y DWW++GV++YEM+ G PPF A+ + +
Sbjct: 152 TTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDL------F 205
Query: 790 ESCLH--IPAEAQLSPEGADLILQLCT-GADKRLGKNAS-----EVKAHPFFSNVDFEK- 840
ES LH + LS E ++ T +KRLG AS +K HPFF +D+
Sbjct: 206 ESILHDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWVLL 265
Query: 841 GVRTLTPPHIPRIQNSMDTSNFD-----------PVDPDKLRN 872
R + PP P+I+ D +NFD PVDP ++
Sbjct: 266 EQRKIKPPFKPKIKTKRDVNNFDQDFTKEEPVLTPVDPAVIKQ 308
Score = 51.0 bits (122), Expect = 1e-06
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILA-EADNEWVVKLYYSFQDKDNLYFVMDYI 142
T+ +YA+K L+K +L+ + V E+ ILA A + ++ L+ FQ KD L+FVM+Y+
Sbjct: 19 TDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYV 78
Query: 143 PGEKLI 148
G L+
Sbjct: 79 NGGDLM 84
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 103 bits (258), Expect = 2e-24
Identities = 81/341 (23%), Positives = 122/341 (35%), Gaps = 108/341 (31%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVT----LVRKIDTNHLYVMKTIYKCVGA 571
G+ G V VR T +Y +K I+ V G+ L+R++ T + KC GA
Sbjct: 12 GSSGVVYKVRHKPTGKIYALKKIH----VDGDEEFRKQLLRELKTLRSCESPYVVKCYGA 67
Query: 572 FGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL 631
F +G + V++Y+ GG L LL K G EP +A +
Sbjct: 68 F---------------YKEGE----ISIVLEYMDGGSLADLLKKVGKIPEP----VLAYI 104
Query: 632 TCAV-------ESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSN 684
+ + + IHRDIKP N+LI+ G +K+ DFG+
Sbjct: 105 ARQILKGLDYLHTKRHI--IHRDIKPSNLLINSKGEVKIADFGI---------------- 146
Query: 685 GDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPE 744
+ + + L ++ VGT Y++PE
Sbjct: 147 -----------------------SKVLENTLDQ-------------CNTFVGTVTYMSPE 170
Query: 745 VLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHI-------PA 797
+ Y+ D WS+G+ L E +G PFL +E I
Sbjct: 171 RIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSF------FELMQAICDGPPPSLP 224
Query: 798 EAQLSPEGADLILQ-LCTGADKRLGKNASEVKAHPFFSNVD 837
+ SPE D I L KR +A+E+ HPF D
Sbjct: 225 AEEFSPEFRDFISACLQKDPKKRP--SAAELLQHPFIKKAD 263
Score = 39.5 bits (93), Expect = 0.006
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 80 RLIDTNHLYAMKTLR-KADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
R T +YA+K + D R Q+ E L ++ +VVK Y +F + + V
Sbjct: 21 RHKPTGKIYALKKIHVDGDEEFRKQLL---RELKTLRSCESPYVVKCYGAFYKEGEISIV 77
Query: 139 MDYIPG 144
++Y+ G
Sbjct: 78 LEYMDG 83
Score = 29.5 bits (67), Expect = 6.8
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 8 DVLKRNQVAHVKAERDILAEADNEWVVKLYYSF--QGDIFILVGLWVNTMEY 57
D R Q+ E L ++ +VVK Y +F +G+I I+ +EY
Sbjct: 39 DEEFRKQLL---RELKTLRSCESPYVVKCYGAFYKEGEISIV-------LEY 80
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 104 bits (260), Expect = 4e-24
Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 19/142 (13%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRKIDTNHLYVMKGSPH----- 594
G FG+V L + T+ LY +K + K V E T+V K + + G P
Sbjct: 11 GSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEK----RVLALPGKPPFLTQL 66
Query: 595 -------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
+ LYFVM+Y+ GGDLM + + G F+EP A FY AE+ + +H G I+RD
Sbjct: 67 HSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRD 126
Query: 648 IKPDNILIDRDGHIKLTDFGLC 669
+K DN+++D +GHIK+ DFG+C
Sbjct: 127 LKLDNVMLDAEGHIKIADFGMC 148
Score = 97.2 bits (242), Expect = 8e-22
Identities = 56/172 (32%), Positives = 78/172 (45%), Gaps = 30/172 (17%)
Query: 736 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHI 795
GTP+YIAPE++ Y + DWW+ GV+LYEML G PPF E ++ E +
Sbjct: 163 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIM--EHNVSY 220
Query: 796 PAEAQLSPEGADLILQLCT-GADKRLGKNAS---EVKAHPFFSNVDFEK-GVRTLTPPHI 850
P LS E + L T KRLG + +++ H FF +D+EK R + PP
Sbjct: 221 P--KSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDWEKLERREIQPPFK 278
Query: 851 PRIQNSMDTSNFD-----------PVDPDKLRNSDSMLDELSDELKSPFHGF 891
P+++ NFD P D + N D +S F GF
Sbjct: 279 PKVKGRRSAENFDKFFTREPPVLTPPDKLVIANID----------QSEFQGF 320
Score = 46.3 bits (110), Expect = 5e-05
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADN-EWVVKLYYSFQDKDNLYFVMDYI 142
T+ LYA+K L+K +++ + V E+ +LA ++ +L+ FQ D LYFVM+Y+
Sbjct: 24 TDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYV 83
Query: 143 PGEKLI 148
G L+
Sbjct: 84 NGGDLM 89
Score = 29.4 bits (66), Expect = 9.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCV 488
F + +G G+FG+V L + T+ LYA+K + K V
Sbjct: 2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDV 37
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 101 bits (252), Expect = 6e-24
Identities = 79/309 (25%), Positives = 126/309 (40%), Gaps = 87/309 (28%)
Query: 540 KCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGSPH----- 594
+ +GV +V LV T +++K + K E + R H P+
Sbjct: 1 RVLGVIDKVLLVMDTRTQQTFILKGLRKS----SEYSRERLTIIPH-----CVPNMVCLH 51
Query: 595 ------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
++++ V+ + GG L S + K E + + AE+ A++++H+ G + RD+
Sbjct: 52 KYIVSEDSVFLVLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVALDALHREGIVCRDL 111
Query: 649 KPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
P+NIL+D GHI+LT F RW+ +E S
Sbjct: 112 NPNNILLDDRGHIQLTYFS-----RWS----------------EVEDS------------ 138
Query: 709 RCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 768
C ++ + Y APEV + T+ CDWWS+G IL+E+L
Sbjct: 139 -CDGEAVENM---------------------YCAPEVGGISEETEACDWWSLGAILFELL 176
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCT-GADKRLGK---NA 824
G T E IN + L+IP +S E L+ QL +RLG
Sbjct: 177 TGK------TLVECHPSGINTHTTLNIP--EWVSEEARSLLQQLLQFNPTERLGAGVAGV 228
Query: 825 SEVKAHPFF 833
++K+HPFF
Sbjct: 229 EDIKSHPFF 237
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 102 bits (255), Expect = 7e-24
Identities = 85/332 (25%), Positives = 130/332 (39%), Gaps = 82/332 (24%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC--------VGAFGEVTLVRKIDTNHLYVMKGS-- 592
G FGEV + T +Y K + K A E ++ K+++ + + +
Sbjct: 11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYE 70
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGI--FEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+ L V+ + GGDL + G F+E A FY AEL C +E + + ++RD+KP
Sbjct: 71 TKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKP 130
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
+NIL+D GHI+++D GL P E +G G
Sbjct: 131 ENILLDDRGHIRISDLGLAVQI----------------------PEGETVRGRVG----- 163
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
T Y+APEV+ YT DWW +G ++YEM+ G
Sbjct: 164 --------------------------TVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQG 197
Query: 771 SPPFLANTSAETQYKVINWESCLHIPAEAQ------LSPEGADLILQ-LCTGADKRLG-- 821
PF + + + E E Q S + + L +RLG
Sbjct: 198 QSPF------RKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCR 251
Query: 822 -KNASEVKAHPFFSNVDFEK-GVRTLTPPHIP 851
A+ VK HP F N++F++ L PP P
Sbjct: 252 GNGAAGVKQHPIFKNINFKRLEANMLEPPFCP 283
Score = 39.6 bits (92), Expect = 0.005
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T +YA K L K + KR A E+ IL + ++ +VV L Y+++ KD L V+ +
Sbjct: 24 TGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMN 83
Query: 144 GEKL 147
G L
Sbjct: 84 GGDL 87
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 100 bits (250), Expect = 4e-23
Identities = 73/271 (26%), Positives = 111/271 (40%), Gaps = 68/271 (25%)
Query: 579 RKIDTNHLYVMKGSPHNN-------------LYFVMDYIPGGDLMSLLIKKGIFEEPLAR 625
R++ N + +M+ H N L+ VM+++ GG L ++ + EE +A
Sbjct: 60 RELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAT 119
Query: 626 FYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
+A L A+ +H G IHRDIK D+IL+ DG +KL+DFG C
Sbjct: 120 VCLAVLK-ALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCA--------------- 163
Query: 686 DHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEV 745
+ S+ P RR+ SLVGTP ++APEV
Sbjct: 164 ------------QVSKEVP---------------RRK----------SLVGTPYWMAPEV 186
Query: 746 LLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEG 805
+ R Y D WS+G+++ EM+ G PP+ N K I + ++SP
Sbjct: 187 ISRLPYGTEVDIWSLGIMVIEMVDGEPPYF-NEPPLQAMKRIRDNLPPKLKNLHKVSPRL 245
Query: 806 ADLILQLCTGADKRLGKNASEVKAHPFFSNV 836
L D A+E+ HPF +
Sbjct: 246 RSF-LDRMLVRDPAQRATAAELLNHPFLAKA 275
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 100 bits (250), Expect = 5e-23
Identities = 75/354 (21%), Positives = 126/354 (35%), Gaps = 110/354 (31%)
Query: 515 VGAFGEVTLVRKIDTNHLYVMKTIYKCVGVFG-------EVTLVRKIDT-NHLYVMKTIY 566
GA+G V R ++T +K + + G E+ L++++++ H +++ +
Sbjct: 9 EGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLD 68
Query: 567 KCVGAFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDL---MSLLIKKGIFEEPL 623
C G R++ L V +++ DL +S K G+
Sbjct: 69 VCHG----PRTDRELK--------------LTLVFEHVDQ-DLATYLSKCPKPGL-PPET 108
Query: 624 ARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQS 683
+ + +L V+ +H +HRD+KP NIL+ DG +K+ DFGL ++ Y
Sbjct: 109 IKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGL---------ARIY-- 157
Query: 684 NGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAP 743
L +V T Y AP
Sbjct: 158 --------------------------SFEMALTS----------------VVVTLWYRAP 175
Query: 744 EVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKV----------------- 786
EVLL++ Y D WSVG I E+ P F + A+ K+
Sbjct: 176 EVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVS 235
Query: 787 INWESCLHIPAEA------QLSPEGADLILQ-LCTGADKRLGKNASEVKAHPFF 833
+ S + ++ EG DL+ + L KR+ A E HP+F
Sbjct: 236 LPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRIS--AFEALQHPYF 287
Score = 37.2 bits (87), Expect = 0.031
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFG-------EVTLVRKIDT-NHLYVMKT 510
IG GA+G V R ++T A+K + + G E+ L++++++ H +++
Sbjct: 7 IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRL 66
Query: 511 IYKCVG 516
+ C G
Sbjct: 67 LDVCHG 72
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 98.7 bits (246), Expect = 1e-22
Identities = 84/325 (25%), Positives = 130/325 (40%), Gaps = 73/325 (22%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
G +G V L + T + +K +V L I H K + K + + E+
Sbjct: 12 GTYGRVYLALNVTTGEMMAVK----------QVELPATIAGRHDSRQKDMVKALRS--EI 59
Query: 576 TLVRKIDTNHLYVMK--GSPHNNLYF--VMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL 631
++ +D HL +++ G Y ++Y+PGG + S L G FEE L RF+ ++
Sbjct: 60 ETLKDLD--HLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQV 117
Query: 632 TCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQD 691
+ +H G +HRD+K DN+L+D DG K++DFG+ SK D+ +
Sbjct: 118 LEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGI---------SKKSDDIYDNDQNM 168
Query: 692 SMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEV--LLRT 749
SM+ S W +APEV
Sbjct: 169 SMQGSVFW-----------------------------------------MAPEVIHSYSQ 187
Query: 750 GYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAE--AQLSPEGAD 807
GY+ D WS+G ++ EM G P+ + +K+ N S IP + LSP D
Sbjct: 188 GYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALD 247
Query: 808 LILQLCTGADKRLGKNASEVKAHPF 832
L C + A E+ HPF
Sbjct: 248 F-LNACFTINPDNRPTARELLQHPF 271
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 98.4 bits (245), Expect = 2e-22
Identities = 78/277 (28%), Positives = 115/277 (41%), Gaps = 71/277 (25%)
Query: 584 NHLYVMKGSPHNN-------------LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAE 630
N + VM+ + H N L+ VM+Y+ GG L ++ + + E +A E
Sbjct: 65 NEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV-CRE 123
Query: 631 LTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQ 690
A+E +H IHRDIK DNIL+ DG +KLTDFG C
Sbjct: 124 CLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFC--------------------- 162
Query: 691 DSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG 750
+Q TP E+ +R ++VGTP ++APEV+ R
Sbjct: 163 ---------AQITP--------------EQSKRS--------TMVGTPYWMAPEVVTRKA 191
Query: 751 YTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLIL 810
Y D WS+G++ EM+ G PP+L Y +I + +LS D +
Sbjct: 192 YGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY-LIATNGTPELQNPEKLSAIFRDFLN 250
Query: 811 QLCTGADKRLGKNASEVKAHPFFSNVDFEKGVRTLTP 847
+ C D +A E+ HPF K + +LTP
Sbjct: 251 R-CLEMDVEKRGSAKELLQHPFLK---IAKPLSSLTP 283
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 99.3 bits (247), Expect = 2e-22
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 15/163 (9%)
Query: 732 HSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWES 791
++L GTP YIAPE+LL G+ + DWW++G+ +YE+LVG PPF AN K++ E
Sbjct: 186 YTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKIL--EG 243
Query: 792 CLHIPAEAQLSPEGADLILQLCT-GADKRLG---KNASEVKAHPFFSNVDFEKGV-RTLT 846
++ P L L+ +L + KR G K A VK HP+F N+D+ + + +
Sbjct: 244 IIYFP--KFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSLLHKNVE 301
Query: 847 PPHIPRIQNSMDTSNFDPVDPDKLRNSDSMLDELSDELKSPFH 889
P+ P+ +N D+SNF+ V D ++ D++++E PF
Sbjct: 302 VPYKPKYKNVFDSSNFERVQEDL-----TIADKITNE-NDPFF 338
Score = 46.9 bits (111), Expect = 3e-05
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 89 AMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGEKLI 148
A+K K+ ++K+ QV HV +ER IL ++ + V LY SF+D+ LY V++++ G +
Sbjct: 60 AIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFF 119
Query: 149 PY 150
+
Sbjct: 120 TF 121
Score = 34.6 bits (79), Expect = 0.21
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGDIFILVGL 50
+K K+ ++K+ QV HV +ER IL ++ + V LY SF+ + ++ + L
Sbjct: 61 IKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVL 110
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 98.1 bits (244), Expect = 4e-22
Identities = 97/341 (28%), Positives = 145/341 (42%), Gaps = 81/341 (23%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRKIDTNHLYVMKGSPH----- 594
G FG+V L + T+ LY +K + K V E T+V K + ++ P
Sbjct: 11 GSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEK----RVLALQDKPPFLTQL 66
Query: 595 -------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
+ LYFVM+Y+ GGDLM + + G F+EP A FY AE++ + F+HR
Sbjct: 67 HSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVG------LFFLHR- 119
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQE 707
+I RD +KL + L +S+ + D G
Sbjct: 120 ----RGIIYRD--LKLDNVML--------DSEGHIKIADFGM------------------ 147
Query: 708 CRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM 767
C + + R + GTP+YIAPE++ Y + DWW+ GV+LYEM
Sbjct: 148 --CKEHMVDGVTTR-----------TFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEM 194
Query: 768 LVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTG-ADKRLG---KN 823
L G PPF E ++ E + P LS E + L T KRLG +
Sbjct: 195 LAGQPPFDGEDEDELFQSIM--EHNVSYP--KSLSKEAVSICKGLMTKHPSKRLGCGPEG 250
Query: 824 ASEVKAHPFFSNVDFEK-GVRTLTPPHIPRIQNSMDTSNFD 863
+++ H FF +D++K R + PP P++ NFD
Sbjct: 251 ERDIREHAFFRRIDWDKLENREIQPPFKPKVCGK-GAENFD 290
Score = 47.3 bits (112), Expect = 2e-05
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNE-WVVKLYYSFQDKDNLYFVMDYI 142
T+ LYA+K L+K V++ + V E+ +LA D ++ +L+ FQ D LYFVM+Y+
Sbjct: 24 TDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYV 83
Query: 143 PGEKLI 148
G L+
Sbjct: 84 NGGDLM 89
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 96.1 bits (240), Expect = 8e-22
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 53/178 (29%)
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
L+ +M+Y GG + LL K G +E F + E+ +E +H+ G IHRDIK NIL+
Sbjct: 73 KLWIIMEYCGGGSCLDLL-KPGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILL 131
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPL 715
+G +KL DF G GQ
Sbjct: 132 SEEGDVKLADF-----------------------------------GVSGQ--------- 147
Query: 716 KPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPP 773
L + ++ VGTP ++APEV+ ++GY + D WS+G+ E+ G PP
Sbjct: 148 --LTSTMSK------RNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPP 197
Score = 29.5 bits (67), Expect = 7.4
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 84 TNHLYAMKT--LRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDY 141
TN + A+K L +A+ +++ ++ E L++ + ++ K Y SF L+ +M+Y
Sbjct: 25 TNQVVAIKVIDLEEAE----DEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY 80
Query: 142 IPG 144
G
Sbjct: 81 CGG 83
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 96.0 bits (239), Expect = 2e-21
Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 733 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESC 792
+L GTP Y+APEV+ G+ + DWW++GV+LYE + G PPF +T K++
Sbjct: 174 TLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKIL--AGR 231
Query: 793 LHIPAEAQLSPEGADLILQ-LCTGADKRLG---KNASEVKAHPFFSNVDFEKGVRTLTPP 848
L P DL+ L T KRLG ++VK HP+F +++K P
Sbjct: 232 LKFP--NWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWDKLYARYYPA 289
Query: 849 HIP-RIQNSMDTSNFDPVDPDKLRNSDSMLDELSDELKSPFHGF 891
IP R+++ DTSNF+ PD + L F GF
Sbjct: 290 PIPVRVKSPGDTSNFEKY-PDSPVDRLPPLTAAQQAE---FAGF 329
Score = 92.2 bits (229), Expect = 4e-20
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 20/140 (14%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKID-----------TNHLYV--- 588
G FG V + + T Y +K + K E+ ++++ +H ++
Sbjct: 29 GSFGRVRIAKHKGTGEYYAIKCLKK-----REILKMKQVQHVAQEKSILMELSHPFIVNM 83
Query: 589 MKGSPHNN-LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
M N +YF+++++ GG+L + L K G F +A+FY AEL A E +H I+RD
Sbjct: 84 MCSFQDENRVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRD 143
Query: 648 IKPDNILIDRDGHIKLTDFG 667
+KP+N+L+D GH+K+TDFG
Sbjct: 144 LKPENLLLDNKGHVKVTDFG 163
Score = 64.8 bits (158), Expect = 4e-11
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T YA+K L+K ++LK QV HV E+ IL E + ++V + SFQD++ +YF+++++
Sbjct: 42 TGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVV 101
Query: 144 GEKL 147
G +L
Sbjct: 102 GGEL 105
Score = 41.7 bits (98), Expect = 0.001
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQGD 43
+K L+K ++LK QV HV E+ IL E + ++V + SFQ +
Sbjct: 48 IKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDE 90
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 96.2 bits (239), Expect = 2e-21
Identities = 59/137 (43%), Positives = 84/137 (61%), Gaps = 10/137 (7%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK-CVGAFGEV----TLVRKI-DTNH--LYVMKGS-- 592
G FG+V LVR+ T Y MK + K + A EV T R + +T H L +K +
Sbjct: 6 GTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQ 65
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
H+ L FVM+Y GG+L L ++ +F E ARFY AE+ A+E +H ++RDIK +N
Sbjct: 66 THDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLEN 125
Query: 653 ILIDRDGHIKLTDFGLC 669
+++D+DGHIK+TDFGLC
Sbjct: 126 LMLDKDGHIKITDFGLC 142
Score = 85.4 bits (211), Expect = 7e-18
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 733 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESC 792
+ GTP Y+APEVL Y + DWW +GV++YEM+ G PF N E +++I E
Sbjct: 154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHERLFELILME-- 210
Query: 793 LHIPAEAQLSPEGADLILQLCTGADK-RLG---KNASEVKAHPFFSNVDFEKGV-RTLTP 847
I LSPE L+ L K RLG +A EV H FF +++++ V + L P
Sbjct: 211 -EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLP 269
Query: 848 PHIPRIQNSMDTSNFDP---------VDPDKLRNSDSM 876
P P++ + +DT FD PD+ + +
Sbjct: 270 PFKPQVTSEVDTRYFDDEFTAQSITITPPDRYDSLGLL 307
Score = 52.7 bits (126), Expect = 4e-07
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+R T YAMK LRK ++ +++VAH E +L + ++ L Y+FQ D L FV
Sbjct: 14 VREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 73
Query: 139 MDYIPGEKL 147
M+Y G +L
Sbjct: 74 MEYANGGEL 82
Score = 32.7 bits (74), Expect = 0.86
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK LRK ++ +++VAH E +L + ++ L Y+FQ
Sbjct: 25 MKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQ 65
Score = 31.1 bits (70), Expect = 2.3
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 457 KPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCV 488
K +G G FG+V LVR+ T YAMK + K V
Sbjct: 1 KLLGKGTFGKVILVREKATGRYYAMKILRKEV 32
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 94.4 bits (235), Expect = 2e-21
Identities = 67/246 (27%), Positives = 100/246 (40%), Gaps = 64/246 (26%)
Query: 537 TIYKCVG-VFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGS--P 593
+YK + + G V ++K+ + K C+ E+ L++++D ++ S
Sbjct: 17 VVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLK---EIDLLKQLDHPNVIKYLASFIE 73
Query: 594 HNNLYFVMDYIPGGDLMSLLIK-----KGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
+N L V++ GDL S +IK K + E Y +L A+E +H +HRDI
Sbjct: 74 NNELNIVLELADAGDL-SRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDI 132
Query: 649 KPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
KP N+ I G +KL D GL GR S + +
Sbjct: 133 KPANVFITATGVVKLGDLGL-------------------GRFFSSKTTA----------- 162
Query: 709 RCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 768
AHSLVGTP Y++PE + GY D WS+G +LYEM
Sbjct: 163 ----------------------AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMA 200
Query: 769 VGSPPF 774
PF
Sbjct: 201 ALQSPF 206
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 95.0 bits (236), Expect = 4e-21
Identities = 55/139 (39%), Positives = 77/139 (55%), Gaps = 13/139 (9%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRKIDTN---------HLYVMK 590
G FG+V L TN + +K + K V E T+V K + HLY
Sbjct: 6 GSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTF 65
Query: 591 GSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+ NL+FVM+Y+ GGDLM + F+ P A FY AE+ C ++ +H G ++RD+K
Sbjct: 66 QT-KENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKL 124
Query: 651 DNILIDRDGHIKLTDFGLC 669
DNIL+D DGHIK+ DFG+C
Sbjct: 125 DNILLDTDGHIKIADFGMC 143
Score = 91.6 bits (227), Expect = 6e-20
Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 7/130 (5%)
Query: 736 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHI 795
GTP+YIAPE+LL Y DWWS GV+LYEML+G PF + E ++ I ++ +
Sbjct: 158 GTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEEL-FQSIRMDNPCY- 215
Query: 796 PAEAQLSPEGADLILQL-CTGADKRLGKNASEVKAHPFFSNVDFEK-GVRTLTPPHIPRI 853
L+ E D++++L ++RLG +++ HPFF +D+ R + PP P++
Sbjct: 216 --PRWLTREAKDILVKLFVREPERRLGVKG-DIRQHPFFREIDWSALEEREIEPPFKPKV 272
Query: 854 QNSMDTSNFD 863
+++ D SNFD
Sbjct: 273 KSANDCSNFD 282
Score = 50.0 bits (119), Expect = 3e-06
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEA-DNEWVVKLYYSFQDKDNLYFVMDYI 142
TN +A+K L+K VL + V E+ +L+ A ++ ++ LY +FQ K+NL+FVM+Y+
Sbjct: 19 TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYL 78
Query: 143 PGEKLI 148
G L+
Sbjct: 79 NGGDLM 84
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 93.5 bits (232), Expect = 1e-20
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 13/139 (9%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG---EVTLVRKIDT---------NHLYVMK 590
G FG+V L + +K + K V E T+V K HLY
Sbjct: 6 GSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTF 65
Query: 591 GSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+ +L+FVM+++ GGDLM + KG F+ A FY AE+ C ++ +H G I+RD+K
Sbjct: 66 QT-KEHLFFVMEFLNGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKL 124
Query: 651 DNILIDRDGHIKLTDFGLC 669
DN+++DRDGHIK+ DFG+C
Sbjct: 125 DNVMLDRDGHIKIADFGMC 143
Score = 92.3 bits (229), Expect = 3e-20
Identities = 61/168 (36%), Positives = 91/168 (54%), Gaps = 16/168 (9%)
Query: 731 AHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWE 790
A + GTP+YIAPE+L YT DWWS GV+LYEML+G PF + E ++ I +
Sbjct: 153 ASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDEL-FESIRVD 211
Query: 791 SCLHIPAEAQLSPEGADLILQLCT-GADKRLGKNASEVKAHPFFSNVDF---EKGVRTLT 846
+ H P ++ E D++ +L +RLG + ++ HPFF +++ EK R L
Sbjct: 212 TP-HYP--RWITKESKDILEKLFERDPTRRLGVVGN-IRGHPFFKTINWTALEK--RELD 265
Query: 847 PPHIPRIQNSMDTSNFDP---VDPDKLRNSDSMLDELSDELKSPFHGF 891
PP P++++ D SNFD + +L SD L + D+ S F GF
Sbjct: 266 PPFKPKVKSPSDYSNFDREFLSEKPRLSYSDKNLIDSMDQ--SAFAGF 311
Score = 47.6 bits (113), Expect = 1e-05
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEA-DNEWVVKLYYSFQDKDNLYFVMDYI 142
+A+K L+K VL + V E+ +LA A +N ++ LY +FQ K++L+FVM+++
Sbjct: 19 KGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFL 78
Query: 143 PGEKLI 148
G L+
Sbjct: 79 NGGDLM 84
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 92.2 bits (229), Expect = 2e-20
Identities = 83/326 (25%), Positives = 131/326 (40%), Gaps = 77/326 (23%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
GAF R + T L +K +VT VR + V++ + K E+
Sbjct: 11 GAFSSCYQARDVKTGTLMAVK----------QVTYVRNTSSEQEEVVEALRK------EI 54
Query: 576 TLVRKIDTNHLYVMKGS----PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL 631
L+ +++ H+ M G+ H NL+ ++++ GG + LL K G F+E + Y +L
Sbjct: 55 RLMARLNHPHIIRMLGATCEDSHFNLF--VEWMAGGSVSHLLSKYGAFKEAVIINYTEQL 112
Query: 632 TCAVESVHKMGFIHRDIKPDNILIDRDGH-IKLTDFGLCTGFRWTHNSKYYQSNGDHGRQ 690
+ +H+ IHRD+K N+LID G +++ DF G R
Sbjct: 113 LRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADF------------------GAAARL 154
Query: 691 DSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG 750
+ +GT E L+GT ++APEVL
Sbjct: 155 AA--------KGTGAGE----------------------FQGQLLGTIAFMAPEVLRGEQ 184
Query: 751 YTQLCDWWSVGVILYEMLVGSPPFLA-NTSAETQ--YKVINWESCLHIPAEAQLSPEGAD 807
Y + CD WSVG ++ EM PP+ A S +K+ + + IP LSP D
Sbjct: 185 YGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIP--EHLSPGLRD 242
Query: 808 LILQLCTGADKRLGKNASEVKAHPFF 833
+ L+ C + E+ HP F
Sbjct: 243 VTLR-CLELQPEDRPPSRELLKHPVF 267
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 92.2 bits (229), Expect = 2e-20
Identities = 84/335 (25%), Positives = 140/335 (41%), Gaps = 85/335 (25%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK--------CVGAFGEVTLVRKIDTNHLYVMKGS-- 592
G FGEV+ + T LY K + K GA E ++ K+ + + + +
Sbjct: 4 GGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQ 63
Query: 593 PHNNLYFVMDYIPGGDL----MSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
+L VM + GGDL ++ + F EP A FY A++ +E +H+ I+RD+
Sbjct: 64 TKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDL 123
Query: 649 KPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
KP+N+L+D DG+++++D GL + D ++ ++ GTPG
Sbjct: 124 KPENVLLDNDGNVRISDLGLAVELK-----------------DGQSKTKGYA-GTPG--- 162
Query: 709 RCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 768
++APE+L Y D++++GV LYEM+
Sbjct: 163 -------------------------------FMAPELLQGEEYDFSVDYFALGVTLYEMI 191
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQ-LCTG-----ADKRLG- 821
PF A KV N E I ++ P+ + C +KRLG
Sbjct: 192 AARGPFRARGE-----KVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGF 246
Query: 822 --KNASEVKAHPFFSNVDF---EKGVRTLTPPHIP 851
N ++ HP F ++++ E G+ L PP +P
Sbjct: 247 RDGNCDGLRTHPLFRDLNWRQLEAGM--LPPPFVP 279
Score = 40.6 bits (95), Expect = 0.002
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T LYA K L K + KR E+ ILA+ + ++V L Y+FQ K +L VM +
Sbjct: 17 TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMN 76
Query: 144 GEKL 147
G L
Sbjct: 77 GGDL 80
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 91.7 bits (227), Expect = 3e-20
Identities = 74/253 (29%), Positives = 106/253 (41%), Gaps = 58/253 (22%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
+ L+ VM+Y+ GG L ++ + + E +A E A+E +H IHRDIK DN+L
Sbjct: 89 DELFVVMEYLAGGSLTDVVTETCMDEAQIAAV-CRECLQALEFLHANQVIHRDIKSDNVL 147
Query: 655 IDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSP 714
+ DG +KLTDFG C +Q TP Q R
Sbjct: 148 LGMDGSVKLTDFGFC------------------------------AQITPEQSKRS---- 173
Query: 715 LKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPF 774
++VGTP ++APEV+ R Y D WS+G++ EM+ G PP+
Sbjct: 174 ------------------TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPY 215
Query: 775 LANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHPFFS 834
L Y +I + +LSP D L C D +A E+ HPF
Sbjct: 216 LNENPLRALY-LIATNGTPELQNPEKLSPIFRDF-LNRCLEMDVEKRGSAKELLQHPFLK 273
Query: 835 NVDFEKGVRTLTP 847
K + +LTP
Sbjct: 274 ---LAKPLSSLTP 283
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 91.2 bits (226), Expect = 8e-20
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 25/145 (17%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLY-----VMKGSPH--- 594
G FG+V L ++ Y +K + K ++ L RK + H+ ++K H
Sbjct: 6 GSFGKVLLAKRKLDGKCYAVKVLQK------KIVLNRK-EQKHIMAERNVLLKNVKHPFL 58
Query: 595 ----------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFI 644
LYFV+D++ GG+L L ++ F EP ARFY AE+ A+ +H + +
Sbjct: 59 VGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIV 118
Query: 645 HRDIKPDNILIDRDGHIKLTDFGLC 669
+RD+KP+NIL+D GH+ LTDFGLC
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGLC 143
Score = 86.6 bits (214), Expect = 3e-18
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 18/142 (12%)
Query: 733 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESC 792
+ GTP Y+APEV+ + Y DWW +G +LYEML G PPF AE +++
Sbjct: 155 TFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEM------YDNI 208
Query: 793 LHIPAEAQLSPEGADL----ILQLCTGAD--KRLG--KNASEVKAHPFFSNVDFEKGV-R 843
LH P L P GA L IL+ D +RLG ++ E++ HPFF ++ + +
Sbjct: 209 LHKP--LVLRP-GASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDLEQK 265
Query: 844 TLTPPHIPRIQNSMDTSNFDPV 865
+ PP P ++ D SNFD V
Sbjct: 266 KIPPPFNPNVEGPDDISNFDAV 287
Score = 57.3 bits (138), Expect = 1e-08
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 88 YAMKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFVMDYIPGEK 146
YA+K L+K VL R + H+ AER++L + + ++V L+YSFQ + LYFV+D++ G +
Sbjct: 23 YAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGE 82
Query: 147 LIPYPSPAAAPPPPPS--YSASIQS 169
L + + P P + Y+A I S
Sbjct: 83 LFFHLQRERSFPEPRARFYAAEIAS 107
Score = 33.4 bits (76), Expect = 0.45
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAE-ADNEWVVKLYYSFQ 41
+K L+K VL R + H+ AER++L + + ++V L+YSFQ
Sbjct: 25 VKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQ 66
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 90.4 bits (225), Expect = 8e-20
Identities = 87/334 (26%), Positives = 116/334 (34%), Gaps = 102/334 (30%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIY--KCVGAFGEVTLVRKIDT----NHLYVMK---GSP 593
G G V + +T +K + + G L R+I H YV+K P
Sbjct: 11 GAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQAL-REIKALQACQHPYVVKLLDVFP 69
Query: 594 H-NNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
H + VM+Y+P DL +L + E + Y+ L V +H G +HRD+KP
Sbjct: 70 HGSGFVLVMEYMPS-DLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPA 128
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
N+LI DG +K+ DFGL F + + R S
Sbjct: 129 NLLISADGVLKIADFGLARLF-----------SEEEPRLYS------------------- 158
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL--RTGYTQLCDWWSVGVILYEMLV 769
HQ V T Y APE+L R Y D W+VG I E+L
Sbjct: 159 --------------HQ-------VATRWYRAPELLYGARK-YDPGVDLWAVGCIFAELLN 196
Query: 770 GSPPFLANTSAETQYKVI------NWESCL-----------------------HIPAEAQ 800
GSP F E V N E+ P
Sbjct: 197 GSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFP---D 253
Query: 801 LSPEGADLILQ-LCTGADKRLGKNASEVKAHPFF 833
SPE DL+ L KRL A+E HP+F
Sbjct: 254 ASPEALDLLKGLLVYDPSKRLS--AAEALRHPYF 285
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 89.8 bits (223), Expect = 1e-19
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 57/187 (30%)
Query: 589 MKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
+KG L+ +M+Y GG + +L+ K G E I E+ A++ +HK+G IHRDI
Sbjct: 72 LKGP---RLWIIMEYAEGGSVRTLM-KAGPIAEKYISVIIREVLVALKYIHKVGVIHRDI 127
Query: 649 KPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
K NIL+ G++KL DFG+ N
Sbjct: 128 KAANILVTNTGNVKLCDFGVAALL---------NQN------------------------ 154
Query: 709 RCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEM 767
+R + VGTP ++APEV+ Y D WS+G+ +YEM
Sbjct: 155 ------------SSKRS-------TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEM 195
Query: 768 LVGSPPF 774
G+PP+
Sbjct: 196 ATGNPPY 202
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 90.0 bits (223), Expect = 1e-19
Identities = 94/332 (28%), Positives = 135/332 (40%), Gaps = 82/332 (24%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKT-----IYKCVG---AFGEVTLVRKIDTNHLYVMKGS-- 592
G FGEV + T +Y K I K G A E ++ K+++ + + +
Sbjct: 11 GGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYE 70
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGI--FEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+ L V+ + GGDL + G FEE A FY AE+ C +E +H+ ++RD+KP
Sbjct: 71 TKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKP 130
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
+N I L D+G H R + +
Sbjct: 131 EN--------ILLDDYG-------------------HIRISDLGLA-------------- 149
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
+ P R R VGT Y+APEVL YT D+W +G ++YEM+ G
Sbjct: 150 VKIPEGESIRGR------------VGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEG 197
Query: 771 SPPFLANTS----AETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADK-RLG---K 822
PF E +V+ E A+ S E + L T K RLG +
Sbjct: 198 QSPFRGRKEKVKREEVDRRVLETEEVY----SAKFSEEAKSICKMLLTKDPKQRLGCQEE 253
Query: 823 NASEVKAHPFFSNVDF---EKGVRTLTPPHIP 851
A EVK HPFF N++F E G+ L PP +P
Sbjct: 254 GAGEVKRHPFFRNMNFKRLEAGM--LDPPFVP 283
Score = 39.2 bits (91), Expect = 0.007
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T +YA K L K + KR + E+ IL + ++++VV L Y+++ KD L V+ +
Sbjct: 24 TGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMN 83
Query: 144 GEKL 147
G L
Sbjct: 84 GGDL 87
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 90.5 bits (224), Expect = 2e-19
Identities = 56/138 (40%), Positives = 84/138 (60%), Gaps = 11/138 (7%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK-CVGAFGEV--TLVRK---IDTNH--LYVMKGS-- 592
G FG+V LV++ T Y MK + K + A EV TL ++ H L +K S
Sbjct: 6 GTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQ 65
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVH-KMGFIHRDIKPD 651
H+ L FVM+Y GG+L L ++ +F E ARFY AE+ A++ +H + ++RD+K +
Sbjct: 66 THDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLE 125
Query: 652 NILIDRDGHIKLTDFGLC 669
N+++D+DGHIK+TDFGLC
Sbjct: 126 NLMLDKDGHIKITDFGLC 143
Score = 79.3 bits (195), Expect = 8e-16
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 733 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESC 792
+ GTP Y+APEVL Y + DWW +GV++YEM+ G PF N E +++I E
Sbjct: 155 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHEKLFELILMEE- 212
Query: 793 LHIPAEAQLSPEGADLILQLCTGADK-RLG---KNASEVKAHPFFSNVDFEKGV-RTLTP 847
I LSPE L+ L K RLG +A E+ H FF+ + ++ + L P
Sbjct: 213 --IRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQDVYEKKLVP 270
Query: 848 PHIPRIQNSMDTSNFD 863
P P++ + DT FD
Sbjct: 271 PFKPQVTSETDTRYFD 286
Score = 54.6 bits (131), Expect = 9e-08
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T YAMK L+K ++ +++VAH E +L + + ++ L YSFQ D L FVM+Y
Sbjct: 19 TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYAN 78
Query: 144 GEKL 147
G +L
Sbjct: 79 GGEL 82
Score = 32.7 bits (74), Expect = 0.93
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ 41
MK L+K ++ +++VAH E +L + + ++ L YSFQ
Sbjct: 25 MKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQ 65
Score = 32.3 bits (73), Expect = 1.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 457 KPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCV 488
K +G G FG+V LV++ T YAMK + K V
Sbjct: 1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEV 32
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 89.2 bits (221), Expect = 2e-19
Identities = 63/238 (26%), Positives = 96/238 (40%), Gaps = 48/238 (20%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
N + M+++PGG + S+L + G EP+ Y ++ V +H +HRDIK +N++
Sbjct: 75 NTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVM 134
Query: 655 IDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSP 714
+ +G IKL DFG W G HG +M
Sbjct: 135 LMPNGIIKLIDFGCARRLAWV---------GLHGTHSNM--------------------- 164
Query: 715 LKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPF 774
LK S+ GTP ++APEV+ +GY + D WS+G ++EM G PP
Sbjct: 165 LK----------------SMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPP- 207
Query: 775 LANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHPF 832
LA+ I L S D + C D+ +A ++ H F
Sbjct: 208 LASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFV-TSCLTRDQHERPSALQLLRHDF 264
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 89.1 bits (222), Expect = 2e-19
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTI----YKC---VGAFGEVTLVRKIDTNHLYVMK----- 590
G +G+V R T L +K I K + A E+ L++K+ H +++
Sbjct: 10 GTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLR--HPNIVRLKEIV 67
Query: 591 -GSPHNNLYFVMDYIPGGDLMSLLIKKGI-FEEPLARFYIAELTCAVESVHKMGFIHRDI 648
++Y V +Y+ DL LL + F E + Y+ +L ++ +H G +HRDI
Sbjct: 68 TSKGKGSIYMVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDI 126
Query: 649 KPDNILIDRDGHIKLTDFGL 668
K NILI+ DG +KL DFGL
Sbjct: 127 KGSNILINNDGVLKLADFGL 146
Score = 48.3 bits (116), Expect = 8e-06
Identities = 37/131 (28%), Positives = 50/131 (38%), Gaps = 33/131 (25%)
Query: 733 SLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVI---- 787
+ V T Y PE+LL T Y D WSVG IL E+ +G P F +T E Q + I
Sbjct: 160 NRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELE-QLEKIFELC 218
Query: 788 ------NWESCLHIPAEAQLSP------------------EGADLILQ-LCTGADKRLGK 822
NW +P L P DL+ + L KR+
Sbjct: 219 GSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRI-- 276
Query: 823 NASEVKAHPFF 833
+A + H +F
Sbjct: 277 SADQALQHEYF 287
Score = 32.9 bits (76), Expect = 0.73
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
+ KI IG G +G+V R T L A+K I
Sbjct: 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKI 32
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 89.9 bits (224), Expect = 2e-19
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 57/210 (27%)
Query: 572 FGEVTLVRKIDTNH------LYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLAR 625
F E+ ++++ +H L V+K ++Y V +Y+ DL ++ I+ I E+ R
Sbjct: 54 FREIMFLQEL-GDHPNIVKLLNVIKAENDKDIYLVFEYMET-DLHAV-IRANILEDVHKR 110
Query: 626 FYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
+ + +L A++ +H IHRD+KP NIL++ D +KL DFGL +
Sbjct: 111 YIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSL--------SELEE 162
Query: 686 DHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEV 745
+ + V T Y APE+
Sbjct: 163 NPENPVLTD---------------------------------------YVATRWYRAPEI 183
Query: 746 LL-RTGYTQLCDWWSVGVILYEMLVGSPPF 774
LL T YT+ D WSVG IL EML+G P F
Sbjct: 184 LLGSTRYTKGVDMWSVGCILGEMLLGKPLF 213
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 88.3 bits (219), Expect = 2e-19
Identities = 75/301 (24%), Positives = 114/301 (37%), Gaps = 67/301 (22%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTI--YKCVG-----AFGEVTLVRKIDTNHLYVMKGS--P 593
G FGE TL R+ + + L V K + + A E+ ++ + ++
Sbjct: 11 GAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMD 70
Query: 594 HNNLYFVMDYIPGGDLMSLLI--KKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
N L M+Y GG L ++ K +FEE + +Y+ ++ AV +HK G +HRDIK
Sbjct: 71 DNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTL 130
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
NI + + G IKL DF G S+Y SM
Sbjct: 131 NIFLTKAGLIKLGDF----GISKILGSEY-----------SM------------------ 157
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
A ++VGTP Y++PE+ Y D W++G +LYE+L
Sbjct: 158 -------------------AETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLK 198
Query: 772 PPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHP 831
F A K++ + P + S E L+ D A EV P
Sbjct: 199 RTFDATNPLNLVVKIV---QGNYTPVVSVYSSELISLVHS-LLQQDPEKRPTADEVLDQP 254
Query: 832 F 832
Sbjct: 255 L 255
Score = 35.5 bits (82), Expect = 0.091
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 452 MFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
+I I+ +G GAFGE TL R+ + + L K +
Sbjct: 1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEV 33
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 88.3 bits (219), Expect = 3e-19
Identities = 72/281 (25%), Positives = 114/281 (40%), Gaps = 66/281 (23%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCV-------GAFGEVTLVRKIDTNHLYVMKGS--P 593
G FG+ LV+ + YV+K I + EV ++ + ++ + S
Sbjct: 11 GSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEE 70
Query: 594 HNNLYFVMDYIPGGDLMSLL-IKKGI-FEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+ NLY VMDY GGDL + ++G+ F E + ++ A++ VH +HRDIK
Sbjct: 71 NGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQ 130
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
NI + +DG IKL DFG+ R +
Sbjct: 131 NIFLTKDGTIKLGDFGI---------------------------------------ARVL 151
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
NS ++ LA + +GTP Y++PE+ Y D W++G +LYEM
Sbjct: 152 NSTVE-------------LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLK 198
Query: 772 PPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQL 812
F A K+I + P + S + +L+ QL
Sbjct: 199 HAFEAGNMKNLVLKIIRGS---YPPVSSHYSYDLRNLVSQL 236
Score = 31.0 bits (70), Expect = 2.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
++K+K IG G+FG+ LV+ + Y +K I
Sbjct: 2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEI 33
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 88.3 bits (219), Expect = 3e-19
Identities = 75/304 (24%), Positives = 119/304 (39%), Gaps = 66/304 (21%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC---------VGAF-GEVTLVRKIDTNHLYVMKGS 592
G FG V L +DT +K + V A E+ L++ + + G
Sbjct: 13 GAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGC 72
Query: 593 PHNN--LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
++ L M+Y+PGG + L G E + R Y ++ VE +H +HRDIK
Sbjct: 73 LRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKG 132
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
NIL D G++KL DFG SK Q+
Sbjct: 133 ANILRDSAGNVKLGDFG---------ASKRLQT------------------------ICS 159
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
+ +K + GTP +++PEV+ GY + D WSVG + EML
Sbjct: 160 SGTGMKS----------------VTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTE 203
Query: 771 SPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQ-LCTGADKRLGKNASEVKA 829
PP+ + +K+ + +P+ +SP+ + + + A KR +A E+
Sbjct: 204 KPPWAEFEAMAAIFKIATQPTNPQLPSH--VSPDARNFLRRTFVENAKKR--PSAEELLR 259
Query: 830 HPFF 833
H F
Sbjct: 260 HFFV 263
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 89.0 bits (220), Expect = 3e-19
Identities = 73/253 (28%), Positives = 105/253 (41%), Gaps = 58/253 (22%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
+ L+ VM+Y+ GG L ++ + + E +A E A++ +H IHRDIK DNIL
Sbjct: 89 DELWVVMEYLAGGSLTDVVTETCMDEGQIAAV-CRECLQALDFLHSNQVIHRDIKSDNIL 147
Query: 655 IDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSP 714
+ DG +KLTDFG C +Q TP Q R
Sbjct: 148 LGMDGSVKLTDFGFC------------------------------AQITPEQSKRS---- 173
Query: 715 LKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPF 774
++VGTP ++APEV+ R Y D WS+G++ EM+ G PP+
Sbjct: 174 ------------------TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPY 215
Query: 775 LANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHPFFS 834
L Y +I + +LS D L C D +A E+ HPF
Sbjct: 216 LNENPLRALY-LIATNGTPELQNPERLSAVFRDF-LNRCLEMDVDRRGSAKELLQHPFLK 273
Query: 835 NVDFEKGVRTLTP 847
K + +LTP
Sbjct: 274 ---LAKPLSSLTP 283
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 88.9 bits (220), Expect = 4e-19
Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 61/266 (22%)
Query: 572 FGEVTLVRKIDTNHLYVMKGSPH----NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFY 627
F EV ++R D H V++ L+ +M+++ GG L ++ + + EE +A
Sbjct: 66 FNEVVIMR--DYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQTRLNEEQIATVC 123
Query: 628 IAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDH 687
+ L A+ +H G IHRDIK D+IL+ DG +KL+DFG C
Sbjct: 124 ESVLQ-ALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCA----------------- 165
Query: 688 GRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL 747
+ S+ P +R+ SLVGTP ++APEV+
Sbjct: 166 ----------QISKDVP---------------KRK----------SLVGTPYWMAPEVIS 190
Query: 748 RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGAD 807
RT Y D WS+G+++ EM+ G PP+ +++ + K + + ++SP D
Sbjct: 191 RTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAM-KRLRDSPPPKLKNAHKISPVLRD 249
Query: 808 LILQLCTGADKRLGKNASEVKAHPFF 833
+ ++ T + + A E+ HPF
Sbjct: 250 FLERMLT-REPQERATAQELLDHPFL 274
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 88.6 bits (219), Expect = 6e-19
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 24/144 (16%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLY----VMKGSPH---- 594
G FG+V LVR+ + Y MK + K V ++ K + H V+K + H
Sbjct: 6 GTFGKVILVREKASGKYYAMKILKKEV-------IIAKDEVAHTLTESRVLKNTRHPFLT 58
Query: 595 ---------NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIH 645
+ L FVM+Y+ GG+L L ++ +F E RFY AE+ A++ +H ++
Sbjct: 59 SLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVY 118
Query: 646 RDIKPDNILIDRDGHIKLTDFGLC 669
RD+K +N+++D+DGHIK+TDFGLC
Sbjct: 119 RDLKLENLMLDKDGHIKITDFGLC 142
Score = 80.1 bits (197), Expect = 5e-16
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
Query: 733 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESC 792
+ GTP Y+APEVL Y + DWW +GV++YEM+ G PF N E +++I E
Sbjct: 154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHEKLFELILMED- 211
Query: 793 LHIPAEAQLSPEGADLILQ-LCTGADKRLG---KNASEVKAHPFFSNVDFEKGV-RTLTP 847
I LS + L+ L +KRLG +A E+ H FF+ V+++ + L P
Sbjct: 212 --IKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQDVYDKKLVP 269
Query: 848 PHIPRIQNSMDTSNFD--------PVDPDKLRNSDSMLDELSDELKSPFHGF 891
P P++ + DT FD + P + + D M D + +E + F F
Sbjct: 270 PFKPQVTSETDTRYFDEEFTAQTITITPPEKYDEDGM-DCMDNERRPHFPQF 320
Score = 53.9 bits (129), Expect = 2e-07
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 67 ILGESTTEVDNEIRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLY 126
+LG+ T +R + YAMK L+K ++ +++VAH E +L + ++ L
Sbjct: 2 LLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLK 61
Query: 127 YSFQDKDNLYFVMDYIPGEKL 147
YSFQ KD L FVM+Y+ G +L
Sbjct: 62 YSFQTKDRLCFVMEYVNGGEL 82
Score = 32.4 bits (73), Expect = 1.2
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 MKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQ-GDIFILVGLWVNTME 56
MK L+K ++ +++VAH E +L + ++ L YSFQ D V +VN E
Sbjct: 25 MKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGE 81
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 87.9 bits (217), Expect = 7e-19
Identities = 73/253 (28%), Positives = 105/253 (41%), Gaps = 58/253 (22%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
+ L+ VM+Y+ GG L ++ + + E +A E A+E +H IHRDIK DNIL
Sbjct: 90 DELWVVMEYLAGGSLTDVVTETCMDEGQIAAV-CRECLQALEFLHSNQVIHRDIKSDNIL 148
Query: 655 IDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSP 714
+ DG +KLTDFG C +Q TP
Sbjct: 149 LGMDGSVKLTDFGFC------------------------------AQITP---------- 168
Query: 715 LKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPF 774
E+ +R +VGTP ++APEV+ R Y D WS+G++ EM+ G PP+
Sbjct: 169 ----EQSKRST--------MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPY 216
Query: 775 LANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHPFFS 834
L Y +I + +LS D L C D +A E+ H F
Sbjct: 217 LNENPLRALY-LIATNGTPELQNPEKLSAIFRDF-LNRCLDMDVEKRGSAKELLQHQFLK 274
Query: 835 NVDFEKGVRTLTP 847
K + +LTP
Sbjct: 275 ---IAKPLSSLTP 284
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 86.6 bits (215), Expect = 9e-19
Identities = 70/324 (21%), Positives = 123/324 (37%), Gaps = 87/324 (26%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
G++G V +T + +K V V ++ + K E+
Sbjct: 14 GSYGSVYKAIHKETGQVVAIKV----VPVEEDLQEIIK--------------------EI 49
Query: 576 TLVRKIDTNHLYVMKGS--PHNNLYFVMDYIPGG---DLMSLLIKKGIFEEPLARFYIAE 630
+++++ D+ ++ GS + +L+ VM+Y G D+M + K + EE +A + +
Sbjct: 50 SILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKI-TNKTLTEEEIA-AILYQ 107
Query: 631 LTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQ 690
+E +H IHRDIK NIL++ +G KL DFG+ Q ++
Sbjct: 108 TLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSG-----------QLTDTMAKR 156
Query: 691 DSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG 750
+++ I +P ++APEV+ G
Sbjct: 157 NTV-----------------IGTPF------------------------WMAPEVIQEIG 175
Query: 751 YTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWES-CLHIPAEAQLSPEGADLI 809
Y D WS+G+ EM G PP+ + + N L P + SPE D +
Sbjct: 176 YNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDP--EKWSPEFNDFV 233
Query: 810 LQLCTGADKRLGKNASEVKAHPFF 833
+ D +A ++ HPF
Sbjct: 234 KKCLV-KDPEERPSAIQLLQHPFI 256
Score = 38.0 bits (89), Expect = 0.015
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 83 DTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDY 141
+T + A+K V + + E IL + D+ ++VK Y S+ +L+ VM+Y
Sbjct: 26 ETGQVVAIKV-----VPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY 79
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 86.9 bits (215), Expect = 1e-18
Identities = 80/339 (23%), Positives = 130/339 (38%), Gaps = 76/339 (22%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
G FGEV V+ +T +Y K + K L +K + K I + V + V
Sbjct: 4 GGFGEVCAVQVKNTGKMYACKKLDK-------KRLKKKSGEKMALLEKEILEKVNSPFIV 56
Query: 576 TLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLAR--FYIAELTC 633
L ++ +L VM + GGDL + G + R Y A++TC
Sbjct: 57 NLAYAFESK----------THLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITC 106
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSM 693
+ +H M ++RD+KP+N+L+D G+ +L+D GL
Sbjct: 107 GILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAV----------------------- 143
Query: 694 EPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQ 753
E G K + +R GT Y+APE+L Y+
Sbjct: 144 ----ELKDG-------------KTITQR-------------AGTNGYMAPEILKEEPYSY 173
Query: 754 LCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAE-AQLSPEGADLI-LQ 811
DW+++G +YEM+ G PF + + ++ + E + E D+ L
Sbjct: 174 PVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLF 233
Query: 812 LCTGADKRLGKNAS--EVKAHPFFSNVDFEKGVRTLTPP 848
L + RLG + + H FF ++F + L PP
Sbjct: 234 LAKKPEDRLGSREKNDDPRKHEFFKTINFPRLEAGLIPP 272
Score = 35.7 bits (82), Expect = 0.082
Identities = 20/69 (28%), Positives = 39/69 (56%)
Query: 79 IRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 138
+++ +T +YA K L K + K++ E++IL + ++ ++V L Y+F+ K +L V
Sbjct: 12 VQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLV 71
Query: 139 MDYIPGEKL 147
M + G L
Sbjct: 72 MSLMNGGDL 80
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 86.9 bits (216), Expect = 1e-18
Identities = 80/338 (23%), Positives = 119/338 (35%), Gaps = 106/338 (31%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC------VG----AFGEVTLVRKIDTNHL------ 586
G + V R +T + +K I G A E+ L++++ ++
Sbjct: 11 GTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDV 70
Query: 587 YVMKGSPHNNLYFVMDYIPGGDLMSLLI--KKGIFEEPLARFYIAELTCAVESVHKMGFI 644
+ K N+ V +++ DL +I K + + Y+ +E +H +
Sbjct: 71 FGHKS----NINLVFEFMET-DL-EKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWIL 124
Query: 645 HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTP 704
HRD+KP+N+LI DG +KL DFGL F G+P
Sbjct: 125 HRDLKPNNLLIASDGVLKLADFGLARSF-----------------------------GSP 155
Query: 705 GQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVI 763
R+ HQ V T Y APE+L Y D WSVG I
Sbjct: 156 N----------------RKMTHQ-------VVTRWYRAPELLFGARHYGVGVDMWSVGCI 192
Query: 764 LYEMLVGSPPFLANTSAETQYKVI----------NWE--SCL----------HIPAEAQL 801
E+L+ PFL S Q I NW + L P +
Sbjct: 193 FAELLLRV-PFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIF 251
Query: 802 SPEGADLI--LQ--LCTGADKRLGKNASEVKAHPFFSN 835
D + LQ L +KR+ A + HP+FSN
Sbjct: 252 PAASDDALDLLQRLLTLNPNKRI--TARQALEHPYFSN 287
Score = 30.6 bits (70), Expect = 3.6
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 68 LGESTTEVDNEIRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDI--LAEADNEWVVKL 125
LGE T V + R +T + A+K ++ + + + A R+I L E + ++ L
Sbjct: 8 LGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGL 67
Query: 126 YYSFQDKDNLYFVMDYIPG--EKLI 148
F K N+ V +++ EK+I
Sbjct: 68 LDVFGHKSNINLVFEFMETDLEKVI 92
Score = 29.1 bits (66), Expect = 9.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
+ K K +G G + V R +T + A+K I
Sbjct: 2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKI 33
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 87.0 bits (216), Expect = 2e-18
Identities = 85/343 (24%), Positives = 122/343 (35%), Gaps = 102/343 (29%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC-------VGAFGEVTLVRKIDTNHLYVMK----- 590
G FGEV R+I T + +K I + A E+ +++K+ H V+
Sbjct: 19 GTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKL--KHPNVVPLIDMA 76
Query: 591 -------GSPHNNLYFVMDYIPGGDLMSLLIKKGI-FEEPLARFYIAELTCAVESVHKMG 642
++Y V Y+ DL LL + E + Y+ +L + +H+
Sbjct: 77 VERPDKSKRKRGSVYMVTPYM-DHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENH 135
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
+HRDIK NILID G +K+ DFGL + P G
Sbjct: 136 ILHRDIKAANILIDNQGILKIADFGLARPYD--------------------GPPPNPKGG 175
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVG 761
G R++ +LV T Y PE+LL YT D W +G
Sbjct: 176 GGGG----------------TRKYT-----NLVVTRWYRPPELLLGERRYTTAVDIWGIG 214
Query: 762 VILYEMLVGSPPFLANTSAETQYKVI-------------NWESCLHIP-AEAQLS----- 802
+ EM P L S Q +I W S +P E S
Sbjct: 215 CVFAEMFTRR-PILQGKSDIDQLHLIFKLCGTPTEETWPGWRS---LPGCEGVHSFTNYP 270
Query: 803 -----------PEGADLILQLCT-GADKRLGKNASEVKAHPFF 833
PEG DL+ +L + KRL AS+ HP+F
Sbjct: 271 RTLEERFGKLGPEGLDLLSKLLSLDPYKRL--TASDALEHPYF 311
Score = 30.7 bits (70), Expect = 3.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYKC-------VGAFGEVTLVRKIDTNHLYVMKTI 511
+G G FGEV R+I T + A+K I + A E+ +++K+ H V+ I
Sbjct: 16 LGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKL--KHPNVVPLI 73
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 85.8 bits (213), Expect = 2e-18
Identities = 78/325 (24%), Positives = 122/325 (37%), Gaps = 83/325 (25%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEV 575
G G V+ V T + +KTI + + ++R++D H I GAF
Sbjct: 12 GNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAF--- 68
Query: 576 TLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLL--IKKGIFEEPLARFYIAELTC 633
Y + ++ M+Y+ GG L +L ++ I E L + +A L
Sbjct: 69 -----------YN-----NGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKG 112
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSM 693
K IHRD+KP NIL++ G IKL DFG+
Sbjct: 113 LTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSG----------------------- 149
Query: 694 EPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQ 753
+ +NS LA + VGT +Y+APE + Y+
Sbjct: 150 ---------------QLVNS----------------LAKTFVGTSSYMAPERIQGNDYSV 178
Query: 754 LCDWWSVGVILYEMLVGSPPF-----LANTSAETQYKVINWESCLHIPAEAQLSPEGADL 808
D WS+G+ L E+ G P+ + E ++N +P+ + SP+ D
Sbjct: 179 KSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPR-LPSG-KFSPDFQDF 236
Query: 809 ILQLCTGADKRLGKNASEVKAHPFF 833
+ LC D R + E+ HPF
Sbjct: 237 V-NLCLIKDPRERPSYKELLEHPFI 260
Score = 33.8 bits (78), Expect = 0.33
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 68 LGESTTEVDNEIRLIDTNHLYAMKTLRKA-DVLKRNQVAHVKAERDILAEADNEWVVKLY 126
LG + V +++ T + A+KT+R + + Q+ E DIL + ++ ++V Y
Sbjct: 9 LGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILR---ELDILHKCNSPYIVGFY 65
Query: 127 YSFQDKDNLYFVMDYIPGEKL 147
+F + ++ M+Y+ G L
Sbjct: 66 GAFYNNGDISICMEYMDGGSL 86
Score = 33.4 bits (77), Expect = 0.41
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFGEVTLVRKIDTNHLYVMKTIY 512
+ +G G G V+ V T + A+KTI + + ++R++D H I
Sbjct: 3 LEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIV 62
Query: 513 KCVGAF 518
GAF
Sbjct: 63 GFYGAF 68
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 85.4 bits (211), Expect = 2e-18
Identities = 66/246 (26%), Positives = 101/246 (41%), Gaps = 62/246 (25%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFG------EVTLVRKIDTNHLYVMKGS--PH 594
G FG LV+ ++++ Y MK I + E L+ K+ ++ K S
Sbjct: 11 GSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEAD 70
Query: 595 NNLYFVMDYIPGGDLMSLL-IKKG-IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
+LY VM+Y GGDLM + +++G +F E + ++ V+ +H+ +HRDIK N
Sbjct: 71 GHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKN 130
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
I + ++G +KL DFG R +
Sbjct: 131 IFLTQNGKVKLGDFG---------------------------------------SARLLT 151
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSP 772
SP A + VGTP Y+ PE+ Y D WS+G ILYE+
Sbjct: 152 SPG-------------AYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKH 198
Query: 773 PFLANT 778
PF AN+
Sbjct: 199 PFQANS 204
Score = 29.6 bits (66), Expect = 7.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 456 IKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
++ +G G+FG LV+ ++++ YAMK I
Sbjct: 5 LRVVGEGSFGRALLVQHVNSDQKYAMKEI 33
Score = 29.6 bits (66), Expect = 8.1
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
++ YAMK +R + V + E +LA+ + +V SF+ +LY VM+Y
Sbjct: 24 SDQKYAMKEIRLP--KSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCD 81
Query: 144 GEKLI 148
G L+
Sbjct: 82 GGDLM 86
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 85.8 bits (213), Expect = 3e-18
Identities = 63/256 (24%), Positives = 97/256 (37%), Gaps = 78/256 (30%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVG-----AFGEVTLVRKIDTNH--------LYVM 589
G +G+V R T L +K I + E ++RK +NH ++
Sbjct: 17 GTYGKVYKARHKKTGQLVAIK-IMDIIEDEEEEIKEEYNILRKY-SNHPNIATFYGAFIK 74
Query: 590 KGSP--HNNLYFVMDYIPGG---DLMSLLIKKG-IFEEPLARFYIAELTCAVESVHKMGF 643
K P + L+ VM+ GG DL+ L KKG +E + + E + +H+
Sbjct: 75 KNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKV 134
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
IHRDIK NIL+ ++ +KL DFG+ +Q
Sbjct: 135 IHRDIKGQNILLTKNAEVKLVDFGVS------------------------------AQLD 164
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL-----LRTGYTQLCDWW 758
L RR ++ +GTP ++APEV+ Y D W
Sbjct: 165 ------------STLGRR----------NTFIGTPYWMAPEVIACDEQPDASYDARSDVW 202
Query: 759 SVGVILYEMLVGSPPF 774
S+G+ E+ G PP
Sbjct: 203 SLGITAIELADGKPPL 218
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 85.3 bits (211), Expect = 3e-18
Identities = 71/293 (24%), Positives = 113/293 (38%), Gaps = 77/293 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTI-------YKCVGAFGEVTLVRKIDTNHL------YVM 589
G FG V V + +Y MK I + A E ++ K+D++++ ++
Sbjct: 11 GSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLD 70
Query: 590 KGSPHNNLYFVMDYIPGGDLMSLL---IKKGIFEEPLARFYIAELTCAVESVHKMGFIHR 646
KG L VM+Y GDL LL + + E+ + RF+I ++ + +H +HR
Sbjct: 71 KGK----LNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFI-QILLGLAHLHSKKILHR 125
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
DIK N+ +D ++K+ GD G +
Sbjct: 126 DIKSLNLFLDAYDNVKI---------------------GDLGVAKLLSD----------- 153
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE 766
A+++VGTP Y++PE+ Y + D W++GV+LYE
Sbjct: 154 --------------------NTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYE 193
Query: 767 MLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKR 819
G PF AN K+I + P S + A LI C D R
Sbjct: 194 CCTGKHPFDANNQGALILKIIRG---VFPPVSQMYSQQLAQLI-DQCLTKDYR 242
Score = 45.2 bits (107), Expect = 6e-05
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 64 LKSILGESTTEVDNEIRLIDTNHLYAMK--TLRKADVLKRNQVAHVKAERDILAEADNEW 121
+ + +G+ + V ++ +YAMK L K + +R + E +LA+ D+ +
Sbjct: 4 ILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAID---EARVLAKLDSSY 60
Query: 122 VVKLYYSFQDKDNLYFVMDYIPGEKL 147
+++ Y SF DK L VM+Y L
Sbjct: 61 IIRYYESFLDKGKLNIVMEYAENGDL 86
Score = 30.2 bits (68), Expect = 4.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
F + IG G+FG V V + +YAMK I
Sbjct: 2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQI 33
Score = 29.4 bits (66), Expect = 8.3
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 21/102 (20%)
Query: 4 LRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSF--QGDIFILVGLWVNTMEYALAA 61
L K + +R + E +LA+ D+ ++++ Y SF +G + I+ MEYA
Sbjct: 35 LSKMNRREREEAID---EARVLAKLDSSYIIRYYESFLDKGKLNIV-------MEYAENG 84
Query: 62 RV---LKSILGESTTEVDNEIR-----LIDTNHLYAMKTLRK 95
+ LK G E D R L+ HL++ K L +
Sbjct: 85 DLHKLLKMQRGRPLPE-DQVWRFFIQILLGLAHLHSKKILHR 125
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 85.1 bits (210), Expect = 7e-18
Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 55/206 (26%)
Query: 572 FGEVTLVRKIDTNHLYVMKGS--PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIA 629
F EV ++R ++ M S + L+ VM+++ GG L ++ + EE +A +A
Sbjct: 65 FNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLA 124
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR 689
L A+ +H G IHRDIK D+IL+ DG +KL+DFG C Q +
Sbjct: 125 VLK-ALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA-----------QVS----- 167
Query: 690 QDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT 749
K + RR+ SLVGTP ++APE++ R
Sbjct: 168 --------------------------KEVPRRK----------SLVGTPYWMAPELISRL 191
Query: 750 GYTQLCDWWSVGVILYEMLVGSPPFL 775
Y D WS+G+++ EM+ G PP+
Sbjct: 192 PYGPEVDIWSLGIMVIEMVDGEPPYF 217
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 84.1 bits (209), Expect = 1e-17
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGSPHNN------ 596
G FG V L R +T L +K + K ++ E +R++ + K + H N
Sbjct: 10 GTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREV----KSLRKLNEHPNIVKLKE 65
Query: 597 -------LYFVMDYIPGG--DLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
LYFV +Y+ G LM K F E + R I ++ + +HK GF HRD
Sbjct: 66 VFRENDELYFVFEYMEGNLYQLMKDR-KGKPFSESVIRSIIYQILQGLAHIHKHGFFHRD 124
Query: 648 IKPDNILIDRDGHIKLTDFGL 668
+KP+N+L+ +K+ DFGL
Sbjct: 125 LKPENLLVSGPEVVKIADFGL 145
Score = 43.7 bits (104), Expect = 2e-04
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 30/127 (23%)
Query: 735 VGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKV------- 786
V T Y APE+LLR T Y+ D W++G I+ E+ P F ++ + YK+
Sbjct: 159 VSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTP 218
Query: 787 ----------------INWESCLHIPAEAQL---SPEGADLILQLCT-GADKRLGKNASE 826
+ + SPE DLI + KR AS+
Sbjct: 219 TKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRP--TASQ 276
Query: 827 VKAHPFF 833
HP+F
Sbjct: 277 ALQHPYF 283
Score = 33.3 bits (77), Expect = 0.46
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 82 IDTNHLYAMKTLRKA-----DVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLY 136
+T L A+K ++K + + +V ++ L E N +VKL F++ D LY
Sbjct: 21 KETGELVAIKKMKKKFYSWEECMNLREVKSLRK----LNEHPN--IVKLKEVFRENDELY 74
Query: 137 FVMDYI 142
FV +Y+
Sbjct: 75 FVFEYM 80
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 82.6 bits (205), Expect = 2e-17
Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 62/209 (29%)
Query: 574 EVTLVRKIDTNHL-----YVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARF-- 626
E ++RK+D ++ + P L VM+Y+PGGDL+ L K E L+
Sbjct: 51 EARIMRKLDHPNIVKLLGVCTEEEP---LMIVMEYMPGGDLLDYLRKNRPKELSLSDLLS 107
Query: 627 YIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGD 686
+ ++ +E + FIHRD+ N L+ + +K++DFGL R ++ YY+ G
Sbjct: 108 FALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLS---RDLYDDDYYKVKGG 164
Query: 687 HGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL 746
P++ ++APE L
Sbjct: 165 -------------------------KLPIR-----------------------WMAPESL 176
Query: 747 LRTGYTQLCDWWSVGVILYEML-VGSPPF 774
+T D WS GV+L+E+ +G P+
Sbjct: 177 KEGKFTSKSDVWSFGVLLWEIFTLGEEPY 205
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 82.2 bits (204), Expect = 3e-17
Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 70/249 (28%)
Query: 543 GVFGEV---TLVRKIDTNHLYV-MKTIYKCVGA------FGEVTLVRKIDTNHL-----Y 587
G FGEV TL + V +KT+ + E ++++K+ ++
Sbjct: 10 GAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLGV 69
Query: 588 VMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIA-ELTCAVESVHKMGFIHR 646
+G P LY V +Y+PGGDL+ L K G +A ++ +E + F+HR
Sbjct: 70 CTQGEP---LYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNFVHR 126
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
D+ N L+ + +K++DFGL R + YY+ G+
Sbjct: 127 DLAARNCLVTENLVVKISDFGLS---RDIYEDDYYRK-RGGGK----------------- 165
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE 766
P+K ++APE L +T D WS GV+L+E
Sbjct: 166 ------LPIK-----------------------WMAPESLKDGKFTSKSDVWSFGVLLWE 196
Query: 767 ML-VGSPPF 774
+ +G P+
Sbjct: 197 IFTLGEQPY 205
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 82.8 bits (205), Expect = 7e-17
Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 84/276 (30%)
Query: 590 KGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
G+ ++Y VMD + DL ++ E R+++ +L ++ +H IHRD+K
Sbjct: 76 PGADFKDVYVVMDLM-ESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLK 134
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P N+L++ D +++ DFG+ R
Sbjct: 135 PSNLLVNEDCELRIGDFGM---------------------------------------AR 155
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG-YTQLCDWWSVGVILYEML 768
++S P EH+ + V T Y APE+LL YT D WSVG I EML
Sbjct: 156 GLSS--SPT------EHKYFMT-EYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEML 206
Query: 769 ---------------------VGSPP--FLANTSAETQYKVINWESCLHIPAEA------ 799
+GSP L ++ K I ++
Sbjct: 207 GRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYI--QNLPRKQPVPWSKIFP 264
Query: 800 QLSPEGADLILQLCT-GADKRLGKNASEVKAHPFFS 834
+ SPE DL+ Q+ ++R+ + HPF +
Sbjct: 265 KASPEALDLLSQMLQFDPEERI--TVEQALQHPFLA 298
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 81.5 bits (202), Expect = 7e-17
Identities = 80/338 (23%), Positives = 117/338 (34%), Gaps = 112/338 (33%)
Query: 543 GVFGEVTLVRKIDTNHLYV---MKTIYK---CVGAFGEVTLVRKIDTNHLYVMK------ 590
G F EV + T Y MK +K V E+ +R++ + H +++
Sbjct: 10 GTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRL-SPHPNILRLIEVLF 68
Query: 591 GSPHNNLYFVMDYIPGGDLMSL--LIK--KGIFEEPLARFYIAELTCAVESVHKMGFIHR 646
L V + + M+L LIK K E + Y+ +L +++ +H+ G HR
Sbjct: 69 DRKTGRLALVFELMD----MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHR 124
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
DIKP+NILI D +KL D G
Sbjct: 125 DIKPENILIKDD-ILKL---------------------ADFG------------------ 144
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG-YTQLCDWWSVGVILY 765
CR I S E + T Y APE LL G Y D W+VG + +
Sbjct: 145 SCRGIYSKPPYTE--------------YISTRWYRAPECLLTDGYYGPKMDIWAVGCVFF 190
Query: 766 EML---------------------VGSPP----FLANTSAETQY----KVINWESCLHIP 796
E+L +G+P S Y K L +P
Sbjct: 191 EILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKL-LP 249
Query: 797 AEAQLSPEGADLILQLCT-GADKRLGKNASEVKAHPFF 833
S EG DL+ +L D+R+ A + HP+F
Sbjct: 250 ---NASAEGLDLLKKLLAYDPDERI--TAKQALRHPYF 282
Score = 66.1 bits (162), Expect = 1e-11
Identities = 55/219 (25%), Positives = 81/219 (36%), Gaps = 77/219 (35%)
Query: 456 IKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFGEVTLVRKIDTNHLYVMKTIYK-- 513
+ IG G F EV + T YA+K MK +K
Sbjct: 4 LGKIGEGTFSEVLKAQSRKTGKYYAIKC------------------------MKKHFKSL 39
Query: 514 -CVGAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTIYKCVGAF 572
V E+ +R++ + H +++ I L+ KT
Sbjct: 40 EQVNNLREIQALRRL-SPHPNILRLI------------------EVLFDRKT-------- 72
Query: 573 GEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELT 632
G + LV L M NLY + I G +K E + Y+ +L
Sbjct: 73 GRLALVF-----ELMDM------NLY---ELIKG--------RKRPLPEKRVKSYMYQLL 110
Query: 633 CAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG 671
+++ +H+ G HRDIKP+NILI D +KL DFG C G
Sbjct: 111 KSLDHMHRNGIFHRDIKPENILIKDD-ILKLADFGSCRG 148
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 80.5 bits (199), Expect = 1e-16
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
NLY ++ +PGG L LL K G F EP+ R Y ++ +E +H +HRDIK NIL+
Sbjct: 76 NLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILV 135
Query: 656 DRDGHIKLTDFGL 668
D +G +KL DFG+
Sbjct: 136 DTNGVVKLADFGM 148
Score = 67.4 bits (165), Expect = 3e-12
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 731 AHSLVGTPNYIAPEVLLRTG-YTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINW 789
A S G+P ++APEV+ + G Y D WS+G + EM G PP+ +K+
Sbjct: 158 AKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRS 217
Query: 790 ESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHPF 832
+ IP LS E D IL+ C D L A+E+ HPF
Sbjct: 218 KELPPIPDH--LSDEAKDFILK-CLQRDPSLRPTAAELLEHPF 257
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 81.2 bits (200), Expect = 1e-16
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 55/206 (26%)
Query: 572 FGEVTLVRKIDTNHLYVMKGS--PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIA 629
F EV ++R ++ M S + L+ VM+++ GG L ++ + EE +A ++
Sbjct: 67 FNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLS 126
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR 689
L A+ +H G IHRDIK D+IL+ DG IKL+DFG
Sbjct: 127 VLR-ALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGF--------------------- 164
Query: 690 QDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT 749
C ++ K + +R+ SLVGTP ++APEV+ R
Sbjct: 165 ------------------CAQVS---KEVPKRK----------SLVGTPYWMAPEVISRL 193
Query: 750 GYTQLCDWWSVGVILYEMLVGSPPFL 775
Y D WS+G+++ EM+ G PP+
Sbjct: 194 PYGTEVDIWSLGIMVIEMIDGEPPYF 219
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 77.5 bits (191), Expect = 2e-15
Identities = 60/259 (23%), Positives = 97/259 (37%), Gaps = 64/259 (24%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKG-IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNI 653
N L+ ++++ GG L S++++ EP R+ ++ A+ +H IHRD+K NI
Sbjct: 75 NKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNI 134
Query: 654 LIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINS 713
L+ DG +KL DFG+ S
Sbjct: 135 LLTLDGDVKLADFGV--------------------------------------------S 150
Query: 714 PLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-----RTGYTQLCDWWSVGVILYEML 768
++R + +GTP ++APEV+ Y D WS+G+ L E+
Sbjct: 151 AKNKSTLQKR--------DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELA 202
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADL--ILQLCTGADKRLGKNASE 826
PP K++ E P Q S + L+ C D A+E
Sbjct: 203 QMEPPHHELNPMRVLLKILKSEP----PTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAE 258
Query: 827 VKAHPFFSNVDFEKGVRTL 845
+ HPF S+ K ++ L
Sbjct: 259 LLKHPFVSDQSDNKAIKDL 277
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 76.8 bits (190), Expect = 2e-15
Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 71/249 (28%)
Query: 543 GVFGEV---TLVRKIDTNHLYV-MKTIYKCVGA------FGEVTLVRKIDTNHL-----Y 587
G FGEV L K + V +KT+ + E ++RK+D ++
Sbjct: 10 GAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGV 69
Query: 588 VMKGSPHNNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHR 646
+ P LY VM+Y+ GGDL+S L K + + ++ +E + FIHR
Sbjct: 70 CTEEEP---LYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNFIHR 126
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
D+ N L+ + +K++DFGL R ++ YY+ G
Sbjct: 127 DLAARNCLVGENLVVKISDFGLS---RDLYDDDYYRKRGG-------------------- 163
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE 766
P++ ++APE L +T D WS GV+L+E
Sbjct: 164 -----KLPIR-----------------------WMAPESLKEGKFTSKSDVWSFGVLLWE 195
Query: 767 ML-VGSPPF 774
+ +G P+
Sbjct: 196 IFTLGEQPY 204
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 75.8 bits (187), Expect = 7e-15
Identities = 77/326 (23%), Positives = 121/326 (37%), Gaps = 87/326 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK-------CVGAFGEVTLVRKIDTNHLYVMK----G 591
G +G V R T + +K I A E+ L++++ NH ++K
Sbjct: 10 GTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL--NHPNIIKLLDVF 67
Query: 592 SPHNNLYFVMDYIPGGDLMSLL-IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+LY V +++ DL L+ ++ E L + Y+ +L + H G +HRD+KP
Sbjct: 68 RHKGDLYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKP 126
Query: 651 DNILIDRDGHIKLTDFGLCTGFR-----WTH--------------NSKYYQSNGDHGRQD 691
+N+LI+ +G +KL DFGL F +TH K Y + D
Sbjct: 127 ENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVD----- 181
Query: 692 SMEPSEEWSQGTPGQECRCINSPL---KPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR 748
WS G CI + L +PL + Q +GTP+ PEV
Sbjct: 182 ------IWSVG-------CIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPD---PEVW-- 223
Query: 749 TGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADL 808
+T L P + + P SP+ DL
Sbjct: 224 PKFTSL---------ARNYKFSFP----------KKAGMPLP--KLFPN---ASPQALDL 259
Query: 809 ILQLCT-GADKRLGKNASEVKAHPFF 833
+ Q+ KR+ A + AHP+F
Sbjct: 260 LSQMLHYDPHKRI--TAEQALAHPYF 283
Score = 32.7 bits (75), Expect = 0.67
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYK-------CVGAFGEVTLVRKIDTNHL 505
+ K+ IG G +G V R T + A+K I A E+ L++++ NH
Sbjct: 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL--NHP 58
Query: 506 YVMKTIYKCVGAFGEVTLVRK-IDTNHLYVMKT 537
++K + G++ LV + +DT+ ++K
Sbjct: 59 NIIK-LLDVFRHKGDLYLVFEFMDTDLYKLIKD 90
Score = 31.1 bits (71), Expect = 2.2
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 68 LGESTTEVDNEIRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDI--LAEADNEWVVKL 125
+GE T V + R T + A+K ++ ++ A R+I L E ++ ++KL
Sbjct: 7 IGEGTYGVVYKARDKLTGEIVAIKKIKLR---FESEGIPKTALREIKLLKELNHPNIIKL 63
Query: 126 YYSFQDKDNLYFVMDY 141
F+ K +LY V ++
Sbjct: 64 LDVFRHKGDLYLVFEF 79
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 75.7 bits (187), Expect = 7e-15
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 71/254 (27%)
Query: 539 YKCV-----GVFGEVTLVRKIDTNHLYVMKTI-YKCVGAFGEVTLVRKIDT----NHLYV 588
Y+ + G +G V R T + +K + + +T +R+I+ H +
Sbjct: 7 YEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNI 66
Query: 589 MK------GSPHNNLYFVMDYIPGGDLMSLL-IKKGIFEEPLARFYIAELTCAVESVHKM 641
+ GS + +Y VM+Y+ DL SL+ K F + + + +L V +H
Sbjct: 67 VTVKEVVVGSNLDKIYMVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDN 125
Query: 642 GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQ 701
+HRD+K N+L++ G +K+ DFGL ++ Y
Sbjct: 126 WILHRDLKTSNLLLNNRGILKICDFGL---------AREYG------------------- 157
Query: 702 GTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG-YTQLCDWWSV 760
SPLKP + LV T Y APE+LL Y+ D WSV
Sbjct: 158 -----------SPLKPYTQ-------------LVVTLWYRAPELLLGAKEYSTAIDMWSV 193
Query: 761 GVILYEMLVGSPPF 774
G I E+L P F
Sbjct: 194 GCIFAELLTKKPLF 207
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 75.4 bits (185), Expect = 7e-15
Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 64/248 (25%)
Query: 543 GVFGEVTLVR-KIDTNHLYVMK------TIYKCVGAFGEVTLVRKIDTNHLYVMKGS--P 593
G FG++ L + K D+ H + + + + + EV L+ K+ ++ S
Sbjct: 11 GSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQE 70
Query: 594 HNNLYFVMDYIPGGDLMSLL-IKKGI-FEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+ L+ VM+Y GGDLM + ++G+ F E + +++ ++ +H +HRDIK
Sbjct: 71 NGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQ 130
Query: 652 NILIDRDGHI-KLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
NI + ++G + KL DFG+ DSME
Sbjct: 131 NIFLSKNGMVAKLGDFGIARQL-----------------NDSME---------------- 157
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
LA++ VGTP Y++PE+ Y D WS+G +LYE+
Sbjct: 158 -------------------LAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTL 198
Query: 771 SPPFLANT 778
PF N
Sbjct: 199 KHPFEGNN 206
Score = 30.3 bits (68), Expect = 4.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 108 KAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGEKLI 148
K E +LA+ + +V + SFQ+ L+ VM+Y G L+
Sbjct: 47 KKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLM 87
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 76.0 bits (187), Expect = 1e-14
Identities = 51/213 (23%), Positives = 75/213 (35%), Gaps = 58/213 (27%)
Query: 576 TLVRKIDTNHLYVMKGSPHNNLY-------------FVMDYIPGGDLMSLLIKKGIFEEP 622
T +R++ +M H N+ VMD + DL ++ +K E
Sbjct: 66 TTLRELK-----IMNEIKHENIMGLVDVYVEGDFINLVMDIM-ASDLKKVVDRKIRLTES 119
Query: 623 LARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQ 682
+ + ++ + +HK F+HRD+ P NI I+ G K+ DFGL
Sbjct: 120 QVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLAR------------ 167
Query: 683 SNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIA 742
R P + +R S V T Y A
Sbjct: 168 --------------------------RYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRA 201
Query: 743 PEVLL-RTGYTQLCDWWSVGVILYEMLVGSPPF 774
PE+L+ Y D WSVG I E+L G P F
Sbjct: 202 PELLMGAEKYHFAVDMWSVGCIFAELLTGKPLF 234
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 75.5 bits (186), Expect = 1e-14
Identities = 56/184 (30%), Positives = 78/184 (42%), Gaps = 59/184 (32%)
Query: 601 MDYIPGGDLMSLLIKKG-IFEEPLARFYIAELT--CAVESVHKMGFIHRDIKPDNILIDR 657
M+++ GG L +L K G I E L + IA L + HK+ +HRD+KP NIL++
Sbjct: 78 MEHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKI--MHRDVKPSNILVNS 135
Query: 658 DGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKP 717
G IKL DFG+ GQ I+S
Sbjct: 136 RGEIKLCDFGV-----------------------------------SGQ---LIDS---- 153
Query: 718 LERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLAN 777
+A+S VGT +Y++PE L T YT D WS+G+ L EM +G P
Sbjct: 154 ------------MANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPP 201
Query: 778 TSAE 781
+ E
Sbjct: 202 DAKE 205
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 74.3 bits (182), Expect = 2e-14
Identities = 46/128 (35%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 735 VGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLH 794
VGT Y+APEV+ YT DWW++G +LYEM+ G PF + + K I E
Sbjct: 162 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF------QQRKKKIKREEVER 215
Query: 795 IPAEAQ------LSPEGADLILQ-LCTGADKRL---GKNASEVKAHPFFSNVDFEK-GVR 843
+ E Q SP+ L LC +RL G A EVK HP F ++F++
Sbjct: 216 LVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRLEAG 275
Query: 844 TLTPPHIP 851
L PP P
Sbjct: 276 MLEPPFKP 283
Score = 72.0 bits (176), Expect = 2e-13
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKC--------VGAFGEVTLVRKIDTNHLYVMKGS-- 592
G FGEV + T +Y K + K A E ++ K+++ + + +
Sbjct: 11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYE 70
Query: 593 PHNNLYFVMDYIPGGDLMSLLIKKGI--FEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+ L V+ + GGDL + G FEE A FY AE+ C +E +H+ ++RD+KP
Sbjct: 71 TKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKP 130
Query: 651 DNILIDRDGHIKLTDFGL 668
+NIL+D GHI+++D GL
Sbjct: 131 ENILLDDHGHIRISDLGL 148
Score = 39.6 bits (92), Expect = 0.005
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 84 TNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIP 143
T +YA K L K + KR + E+ IL + ++ +VV L Y+++ KD L V+ +
Sbjct: 24 TGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMN 83
Query: 144 GEKL 147
G L
Sbjct: 84 GGDL 87
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 73.9 bits (182), Expect = 3e-14
Identities = 63/246 (25%), Positives = 90/246 (36%), Gaps = 69/246 (28%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGSPHNN------ 596
G +G V R T + +K +K + V+K + V++ H N
Sbjct: 12 GAYGVVLKCRNKATGEIVAIKK-FK---ESEDDEDVKKTALREVKVLRQLRHENIVNLKE 67
Query: 597 -------LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
LY V +Y+ L L G R YI +L A+ H IHRDIK
Sbjct: 68 AFRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIK 127
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P+NIL+ G +KL DF GF ++ ++
Sbjct: 128 PENILVSESGVLKLCDF----GF-----ARALRARP------------------------ 154
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEML 768
SPL V T Y APE+L+ T Y + D W++G I+ E+L
Sbjct: 155 --ASPLT----------------DYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELL 196
Query: 769 VGSPPF 774
G P F
Sbjct: 197 DGEPLF 202
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 72.9 bits (179), Expect = 4e-14
Identities = 66/271 (24%), Positives = 102/271 (37%), Gaps = 79/271 (29%)
Query: 543 GVFGEVTLVRKIDTNHLYV-MKTIYKCVGAFG---------------EVTLVRKIDTNHL 586
G FG V VRK + + +K I AFG EVT++++ H
Sbjct: 11 GAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKE-QLRHP 69
Query: 587 YVMKG----SPHNNLYFVMDYIPGGDL----MSLLIKKGIFEEPLARFYIAELTCAVESV 638
+++ ++ LY VMD I G L SL KK F E ++ A+ +
Sbjct: 70 NIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYL 129
Query: 639 HKMGFI-HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSE 697
HK I HRD+ P+NI++ D + +TDFG
Sbjct: 130 HKEKRIVHRDLTPNNIMLGEDDKVTITDFG------------------------------ 159
Query: 698 EWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDW 757
L ++++ E + S+VGT Y PE++ Y + D
Sbjct: 160 --------------------LAKQKQPESK---LTSVVGTILYSCPEIVKNEPYGEKADV 196
Query: 758 WSVGVILYEMLVGSPPFLANTSAETQYKVIN 788
W+ G ILY+M PPF + K++
Sbjct: 197 WAFGCILYQMCTLQPPFYSTNMLSLATKIVE 227
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 71.8 bits (177), Expect = 1e-13
Identities = 57/253 (22%), Positives = 88/253 (34%), Gaps = 98/253 (38%)
Query: 570 GAFGEV---TLVRKIDTNH----------------------LYVMKGSPHNN-------- 596
GAFGEV L K VMK H N
Sbjct: 6 GAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVC 65
Query: 597 -----LYFVMDYIPGGDLMSLLIK-KGIFEEPLARF--------YIAELTCAVESVHKMG 642
LY V++Y+ GGDL+ L K + +F P + ++ +E +
Sbjct: 66 TEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK 125
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
F+HRD+ N L+ D +K++DFGL R ++ YY+ G+
Sbjct: 126 FVHRDLAARNCLVGEDLVVKISDFGLS---RDVYDDDYYRKKT-GGK------------- 168
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
P++ ++APE L +T D WS GV
Sbjct: 169 ----------LPIR-----------------------WMAPESLKDGIFTSKSDVWSFGV 195
Query: 763 ILYEMLV-GSPPF 774
+L+E+ G+ P+
Sbjct: 196 LLWEIFTLGATPY 208
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 73.8 bits (181), Expect = 2e-13
Identities = 62/226 (27%), Positives = 90/226 (39%), Gaps = 61/226 (26%)
Query: 600 VMDYIPGGDLMSLLIKKG----IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
V+DY GDL + + F E A ++ AV VH IHRDIK NIL+
Sbjct: 117 VLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILL 176
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQS--NGDHGRQDSMEPSEEWSQGTPGQECRCINS 713
+G +KL DFG SK Y + + D GR
Sbjct: 177 CSNGLVKLGDFGF---------SKMYAATVSDDVGR------------------------ 203
Query: 714 PLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPP 773
+ GTP Y+APE+ R Y++ D +S+GV+LYE+L P
Sbjct: 204 -------------------TFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRP 244
Query: 774 FLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKR 819
F E +K + + + P +SPE +++ L + KR
Sbjct: 245 FDGENMEEVMHKTL---AGRYDPLPPSISPEMQEIVTALLSSDPKR 287
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 70.9 bits (173), Expect = 2e-13
Identities = 71/308 (23%), Positives = 114/308 (37%), Gaps = 75/308 (24%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIY---------KCVGAFG-EVTLVRKIDTNHLY----V 588
G FG V L +DT K + K V A E+ L++ + +
Sbjct: 13 GAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGC 72
Query: 589 MKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
++ L M+Y+PGG + L G E + R Y ++ + +H +HRDI
Sbjct: 73 LRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDI 132
Query: 649 KPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
K NIL D G++KL GD G
Sbjct: 133 KGANILRDSAGNVKL---------------------GDFGAS------------------ 153
Query: 709 RCINSPLKPLERRRRREHQRCLA----HSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL 764
+R C++ S+ GTP +++PEV+ GY + D WS+G +
Sbjct: 154 --------------KRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTV 199
Query: 765 YEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNA 824
EML PP+ + +K+ + +P + +S D + + A R +A
Sbjct: 200 VEMLTEKPPWAEYEAMAAIFKIATQPTNPQLP--SHISEHARDFLGCIFVEARHR--PSA 255
Query: 825 SEVKAHPF 832
E+ HPF
Sbjct: 256 EELLRHPF 263
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 70.9 bits (173), Expect = 2e-13
Identities = 59/243 (24%), Positives = 94/243 (38%), Gaps = 62/243 (25%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVG-----AFGEVTLVRKIDTNHLYVMKGS--PHN 595
G +G+V R ++T L +K I G E+ +++ +++ GS +
Sbjct: 20 GTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRD 79
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
L+ M++ GG L + G E + E + +H G +HRDIK NIL+
Sbjct: 80 KLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILL 139
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPL 715
+GH+KL DFG+ T
Sbjct: 140 TDNGHVKLADFGVSAQITAT---------------------------------------- 159
Query: 716 KPLERRRRREHQRCLAHSLVGTPNYIAPEVLL---RTGYTQLCDWWSVGVILYEMLVGSP 772
+ +R+ S +GTP ++APEV + GY QLCD W+VG+ E+ P
Sbjct: 160 --IAKRK----------SFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQP 207
Query: 773 PFL 775
P
Sbjct: 208 PMF 210
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 70.4 bits (172), Expect = 5e-13
Identities = 71/274 (25%), Positives = 114/274 (41%), Gaps = 68/274 (24%)
Query: 584 NHLYVMK--GSPH--NNLYFVMDYIPGG--DLMSLLIKKGIFEEPLARFYIAELTCAVES 637
NH Y++K G+ + L+ ++++ PGG D + L + +G+ EP + ++ A++
Sbjct: 67 NHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGL-TEPQIQVICRQMLEALQY 125
Query: 638 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSE 697
+H M IHRD+K N+L+ DG IKL DFG+
Sbjct: 126 LHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSA--------------------------- 158
Query: 698 EWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-----RTGYT 752
+K L+RR S +GTP ++APEV++ T Y
Sbjct: 159 ---------------KNVKTLQRR----------DSFIGTPYWMAPEVVMCETMKDTPYD 193
Query: 753 QLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWE-SCLHIPAEAQLSPEGADLILQ 811
D WS+G+ L EM PP K+ E L P ++ S E D L+
Sbjct: 194 YKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQP--SKWSMEFRDF-LK 250
Query: 812 LCTGADKRLGKNASEVKAHPFFSNVDFEKGVRTL 845
+A+++ HPF S+V + +R L
Sbjct: 251 TALDKHPETRPSAAQLLEHPFVSSVTSNRPLREL 284
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 69.7 bits (171), Expect = 6e-13
Identities = 62/259 (23%), Positives = 98/259 (37%), Gaps = 70/259 (27%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGSPHNNL----- 597
G +G V + +T + +K + + +V+KI + ++K H NL
Sbjct: 12 GSYGMVMKCKHKETGQIVAIKKFLES----EDDKMVKKIAMREIRMLKQLRHENLVNLIE 67
Query: 598 --------YFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
Y V +++ L L +E R Y+ ++ +E H IHRDIK
Sbjct: 68 VFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIK 127
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
P+NIL+ + G +KL DF GF T + PG+
Sbjct: 128 PENILVSQSGVVKLCDF----GFARTLAA-------------------------PGEVYT 158
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEML 768
V T Y APE+L+ T Y + D W+VG ++ EML
Sbjct: 159 -----------------------DYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEML 195
Query: 769 VGSPPFLANTSAETQYKVI 787
G P F ++ + Y +I
Sbjct: 196 TGEPLFPGDSDIDQLYHII 214
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 69.5 bits (170), Expect = 1e-12
Identities = 76/289 (26%), Positives = 105/289 (36%), Gaps = 89/289 (30%)
Query: 577 LVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKG-----IFEEPLARFYIAEL 631
+VR +D H+ G P +LY V +Y+ DL + G + ++ +L
Sbjct: 63 IVRLLDVEHVEEKNGKP--SLYLVFEYL-DSDLKKFMDSNGRGPGRPLPAKTIKSFMYQL 119
Query: 632 TCAVESVHKMGFIHRDIKPDNILIDRD-GHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQ 690
V HK G +HRD+KP N+L+D+ G +K+ D GL GR
Sbjct: 120 LKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGL-------------------GRA 160
Query: 691 DSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RT 749
S+ P+K H +V T Y APEVLL T
Sbjct: 161 FSI--------------------PVKSY------------THEIV-TLWYRAPEVLLGST 187
Query: 750 GYTQLCDWWSVGVILYEMLVGSPPF---------------LANTSAETQYKVINWESCLH 794
Y+ D WSVG I EM P F L + + V
Sbjct: 188 HYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHE 247
Query: 795 IP---------AEAQLSPEGADLILQ-LCTGADKRLGKNASEVKAHPFF 833
P A LSPEG DL+ + L KR+ +A HP+F
Sbjct: 248 FPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRI--SAKAALTHPYF 294
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 68.6 bits (168), Expect = 1e-12
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 730 LAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVI 787
+A + +GTP+Y+APEV Y+ D WS+G +LYEM +PPF A + + +YKV
Sbjct: 157 MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQ 214
Score = 59.4 bits (144), Expect = 1e-09
Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTI-------YKCVGAFGEVTLVRKIDTNHLYVMKGS--P 593
G +G V V+++ N Y +K + + A E+ ++ ++ ++ K +
Sbjct: 11 GSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLD 70
Query: 594 HNNLYFVMDYIPGGDLMSLL-----IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
N L VM+Y P GDL + +K I E+ + R +I +L ++++H+ +HRD+
Sbjct: 71 GNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFI-QLLRGLQALHEQKILHRDL 129
Query: 649 KPDNILIDRDGHIKLTDFGLCT 670
K NIL+ + +K+ D G+
Sbjct: 130 KSANILLVANDLVKIGDLGISK 151
Score = 32.8 bits (75), Expect = 0.68
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKA--ERDILAEADNEWVVKLYYSFQDKDNLYF 137
RL D N YA+K + D+ +Q A E ILA ++ ++ +F D + L
Sbjct: 21 RLSD-NQFYALK---EVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCI 76
Query: 138 VMDYIPGEKLIPY 150
VM+Y P L
Sbjct: 77 VMEYAPFGDLSKA 89
Score = 31.6 bits (72), Expect = 1.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMK 482
F +K +G G++G V V+++ N YA+K
Sbjct: 2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALK 31
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 69.1 bits (169), Expect = 1e-12
Identities = 64/246 (26%), Positives = 96/246 (39%), Gaps = 73/246 (29%)
Query: 546 GEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMK--GSPH--------- 594
G V+ V+ I T + K ++ +GA V RK L +M SP+
Sbjct: 19 GSVSKVKHIPTGTVMAKKVVH--IGAKSSV---RKQILRELQIMHECRSPYIVSFYGAFL 73
Query: 595 --NNLYFVMDYIPGGDLMSLLIKKG-IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
NN+ M+++ G L + K G I E L + +A + + +HRDIKP
Sbjct: 74 NENNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPS 133
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
NIL++ G IKL DFG+ S E I
Sbjct: 134 NILVNSRGQIKLCDFGV---------------------------SGE-----------LI 155
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
NS +A + VGT Y++PE + YT D WS+G+ + E+ +G
Sbjct: 156 NS----------------IADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGK 199
Query: 772 PPFLAN 777
PF +
Sbjct: 200 FPFAFS 205
Score = 31.3 bits (71), Expect = 1.9
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 455 KIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFGEV--TLVRKIDTNHLYVMKTIY 512
I +G G G V+ V+ I T + A K ++ +GA V ++R++ H I
Sbjct: 9 TISDLGAGNGGSVSKVKHIPTGTVMAKKVVH--IGAKSSVRKQILRELQIMHECRSPYIV 66
Query: 513 KCVGAF 518
GAF
Sbjct: 67 SFYGAF 72
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 68.7 bits (168), Expect = 2e-12
Identities = 80/324 (24%), Positives = 117/324 (36%), Gaps = 100/324 (30%)
Query: 546 GEVTLVRKI--DTNHLYVMKTIYKCVGAFGEVT---LVRKIDTNH----LYVMKGSPHNN 596
GEV ++KI DT V T + + E+ +V+ +D H LY++ H +
Sbjct: 25 GEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQD 84
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILID 656
L MD P + LIK Y+ +L + H +HRD+KP N+LI+
Sbjct: 85 LKKFMDASPLSGIPLPLIKS----------YLFQLLQGLAFCHSHRVLHRDLKPQNLLIN 134
Query: 657 RDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLK 716
+G IKL DFGL F G P
Sbjct: 135 TEGAIKLADFGLARAF-----------------------------GVP------------ 153
Query: 717 PLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG-YTQLCDWWSVGVILYEMLVGSPPFL 775
R H +V T Y APE+LL Y+ D WS+G I EM+ F
Sbjct: 154 ----------VRTYTHEVV-TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFP 202
Query: 776 ANTSAETQYKVIN---------WESCLHIP----------------AEAQLSPEGADLIL 810
++ + +++ W +P L +G DL+
Sbjct: 203 GDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLS 262
Query: 811 Q-LCTGADKRLGKNASEVKAHPFF 833
Q L +KR+ +A AHPFF
Sbjct: 263 QMLHYDPNKRI--SAKAALAHPFF 284
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 71.0 bits (174), Expect = 2e-12
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 47/190 (24%)
Query: 597 LYFVMDYIPGGDLMSLL---IKKGIFEEPLA---------RFYIAELTCAVESVHKMGFI 644
+Y+ M YI G L SLL +K + LA + ++ +E VH G +
Sbjct: 77 VYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFH-KICATIEYVHSKGVL 135
Query: 645 HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTP 704
HRD+KPDNIL+ G + + D+G K +E +
Sbjct: 136 HRDLKPDNILLGLFGEVVILDWGAAI-------FK------------KLEEEDLLDIDVD 176
Query: 705 GQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL 764
+ C +S P +VGTP+Y+APE LL ++ D +++GVIL
Sbjct: 177 -ERNICYSSMTIP--------------GKIVGTPDYMAPERLLGVPASESTDIYALGVIL 221
Query: 765 YEMLVGSPPF 774
Y+ML S P+
Sbjct: 222 YQMLTLSFPY 231
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 68.2 bits (166), Expect = 2e-12
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 55/202 (27%)
Query: 574 EVTLVRKIDTNHLYVMKGS--PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL 631
E+T++ + D+ ++ GS L+ +M+Y+ GG + LL + G F+E + E+
Sbjct: 52 EITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLL-RAGPFDEFQIATMLKEI 110
Query: 632 TCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQD 691
++ +H IHRDIK N+L+ G +KL DF
Sbjct: 111 LKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADF------------------------- 145
Query: 692 SMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGY 751
G GQ L + +R ++ VGTP ++APEV+ ++ Y
Sbjct: 146 ----------GVAGQ--------LTDTQIKR---------NTFVGTPFWMAPEVIQQSAY 178
Query: 752 TQLCDWWSVGVILYEMLVGSPP 773
D WS+G+ E+ G PP
Sbjct: 179 DSKADIWSLGITAIELAKGEPP 200
Score = 34.6 bits (79), Expect = 0.19
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 62 RVLKSILGESTTEVDNEIRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEW 121
R+ K GE +DN T + A+K + + +++ ++ E +L++ D+ +
Sbjct: 11 RIGKGSFGEVFKGIDNR-----TQQVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPY 63
Query: 122 VVKLYYSFQDKDNLYFVMDYIPG 144
V K Y S+ L+ +M+Y+ G
Sbjct: 64 VTKYYGSYLKGTKLWIIMEYLGG 86
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 67.7 bits (165), Expect = 3e-12
Identities = 52/187 (27%), Positives = 71/187 (37%), Gaps = 56/187 (29%)
Query: 595 NNLYFVMDYIPGGDLMSLLI----KKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
N L V++ GDL ++ +K + E Y +L AVE +H +HRDIKP
Sbjct: 75 NELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKP 134
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
N+ I G +KL D GL GR S + + S
Sbjct: 135 ANVFITATGVVKLGDLGL-------------------GRFFSSKTTAAHS---------- 165
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
LVGTP Y++PE + GY D WS+G +LYEM
Sbjct: 166 -----------------------LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 202
Query: 771 SPPFLAN 777
PF +
Sbjct: 203 QSPFYGD 209
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 67.8 bits (165), Expect = 3e-12
Identities = 67/283 (23%), Positives = 101/283 (35%), Gaps = 77/283 (27%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIY---------KCVGAFG-EVTLVRKIDTNHLY----V 588
G FG V L DT +K + K V A E+ L++ + +
Sbjct: 13 GAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGC 72
Query: 589 MKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
++ L M+++PGG + L G E + R Y ++ V +H +HRDI
Sbjct: 73 LRDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDI 132
Query: 649 KPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
K NIL D G++KL GD G
Sbjct: 133 KGANILRDSVGNVKL---------------------GDFGAS------------------ 153
Query: 709 RCINSPLKPLERRRRREHQRCLA----HSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL 764
+R CL+ S+ GTP +++PEV+ GY + D WSVG +
Sbjct: 154 --------------KRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTV 199
Query: 765 YEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGAD 807
EML PP+ + +K+ P L P +D
Sbjct: 200 VEMLTEKPPWAEFEAMAAIFKIATQ------PTNPVLPPHVSD 236
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 67.4 bits (164), Expect = 4e-12
Identities = 66/266 (24%), Positives = 105/266 (39%), Gaps = 69/266 (25%)
Query: 574 EVTLVRKIDTNHLYVMKGS--PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL 631
E+T++ + D+ ++ GS L+ +M+Y+ GG + LL K G EE + E+
Sbjct: 52 EITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLL-KPGPLEETYIATILREI 110
Query: 632 TCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQD 691
++ +H IHRDIK N+L+ G +KL DF
Sbjct: 111 LKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADF------------------------- 145
Query: 692 SMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGY 751
G GQ L + +R ++ VGTP ++APEV+ ++ Y
Sbjct: 146 ----------GVAGQ--------LTDTQIKR---------NTFVGTPFWMAPEVIKQSAY 178
Query: 752 TQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGA----- 806
D WS+G+ E+ G PP S +V+ IP + + EG
Sbjct: 179 DFKADIWSLGITAIELAKGEPPN----SDLHPMRVL-----FLIPKNSPPTLEGQYSKPF 229
Query: 807 DLILQLCTGADKRLGKNASEVKAHPF 832
++ C D R A E+ H F
Sbjct: 230 KEFVEACLNKDPRFRPTAKELLKHKF 255
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 67.5 bits (165), Expect = 4e-12
Identities = 53/245 (21%), Positives = 82/245 (33%), Gaps = 82/245 (33%)
Query: 617 GIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTH 676
G + + + ++ +L + H +HRD+KP N+LI+++G +KL DFGL F
Sbjct: 94 GDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAF---- 149
Query: 677 NSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVG 736
G P RC + +V
Sbjct: 150 -------------------------GIP----------------------VRCYSAEVV- 161
Query: 737 TPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVI-------- 787
T Y P+VL Y+ D WS G I E+ P + Q K I
Sbjct: 162 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPT 221
Query: 788 --NWESCLHIPAE----------------AQLSPEGADLILQLCT-GADKRLGKNASEVK 828
+W +P +L+ G DL+ L +R+ +A E
Sbjct: 222 EESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRI--SAEEAL 279
Query: 829 AHPFF 833
HP+F
Sbjct: 280 QHPYF 284
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 68.9 bits (168), Expect = 5e-12
Identities = 57/198 (28%), Positives = 82/198 (41%), Gaps = 56/198 (28%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGI-----FEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
+ L +M+Y GGDL + IK+ + F+E ++ A++ VH +HRD+K
Sbjct: 138 DKLLLIMEYGSGGDL-NKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLK 196
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
NI + G IKL DFG SK Y DS+
Sbjct: 197 SANIFLMPTGIIKLGDFGF---------SKQYS--------DSVSLD------------- 226
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV 769
+A S GTP Y+APE+ R Y++ D WS+GVILYE+L
Sbjct: 227 --------------------VASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLT 266
Query: 770 GSPPFLANTSAETQYKVI 787
PF + E +V+
Sbjct: 267 LHRPFKGPSQREIMQQVL 284
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 67.0 bits (164), Expect = 6e-12
Identities = 66/277 (23%), Positives = 93/277 (33%), Gaps = 102/277 (36%)
Query: 595 NNLYFV-----------MDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGF 643
N LY V MD P L LIK Y+ +L + H
Sbjct: 71 NKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKS----------YLYQLLQGIAYCHSHRV 120
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
+HRD+KP N+LIDR+G +KL DFGL
Sbjct: 121 LHRDLKPQNLLIDREGALKLADFGL----------------------------------- 145
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGV 762
R P+ R H +V T Y APE+LL Y+ D WS+G
Sbjct: 146 ----ARAFGVPV------------RTYTHEVV-TLWYRAPEILLGSRQYSTPVDIWSIGC 188
Query: 763 ILYEMLVGSPPFLANTSAETQYKV---------INWESCLHIP----------------A 797
I EM+ P F ++ + +++ W +P
Sbjct: 189 IFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKV 248
Query: 798 EAQLSPEGADLILQ-LCTGADKRLGKNASEVKAHPFF 833
L +G DL+ + L KR+ +A HP+F
Sbjct: 249 VPNLDEDGLDLLSKMLVYDPAKRI--SAKAALQHPYF 283
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 66.7 bits (163), Expect = 8e-12
Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 72/248 (29%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTN----HLYVMK--GS---- 592
G G VT R +T ++ +KTI + ++R+++ N Y++K G+
Sbjct: 12 GAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDE 71
Query: 593 PHNNLYFVMDYIPGGDLMSL---LIKKG--IFEEPLARFYIAE-LTCAVESVHKMGFIHR 646
+++ M+Y GG L S+ + K+G I E+ L + IAE + + +H IHR
Sbjct: 72 SSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGK--IAESVLKGLSYLHSRKIIHR 129
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
DIKP NIL+ R G +KL DF G G+
Sbjct: 130 DIKPSNILLTRKGQVKLCDF-----------------------------------GVSGE 154
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE 766
+NS LA + GT Y+APE + Y+ D WS+G+ L E
Sbjct: 155 ---LVNS----------------LAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLE 195
Query: 767 MLVGSPPF 774
+ PF
Sbjct: 196 VAQNRFPF 203
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 65.8 bits (160), Expect = 2e-11
Identities = 64/248 (25%), Positives = 97/248 (39%), Gaps = 65/248 (26%)
Query: 595 NNLYFVMDYIPGG---DLMSLLIKKG-IFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+ L+ V++ GG DL+ +K+G EEP+ + + E ++ +H IHRD+K
Sbjct: 93 DQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKG 152
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
+NIL+ +G +KL DFG+ T
Sbjct: 153 NNILLTTEGGVKLVDFGVSAQLTST----------------------------------- 177
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL-----LRTGYTQLCDWWSVGVILY 765
R RR ++ VGTP ++APEV+ L + Y CD WS+G+
Sbjct: 178 ---------RLRR--------NTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAI 220
Query: 766 EMLVGSPPFLANTSAETQYKVI-NWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNA 824
E+ G PP +K+ N LH P S E D I + C D
Sbjct: 221 ELGDGDPPLADLHPMRALFKIPRNPPPTLHQP--ELWSNEFNDFIRK-CLTKDYEKRPTV 277
Query: 825 SEVKAHPF 832
S++ H F
Sbjct: 278 SDLLQHVF 285
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 64.5 bits (157), Expect = 4e-11
Identities = 65/251 (25%), Positives = 98/251 (39%), Gaps = 64/251 (25%)
Query: 591 GSPHNNLYF--VMDYIPGGDLMSLLIKKG---IFEEPLARFYIAELTCAVESVHKMGFIH 645
GS N +F M+ +PGG L +LL K E FY ++ ++ +H +H
Sbjct: 72 GSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVH 131
Query: 646 RDIKPDNILIDR-DGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTP 704
RDIK DN+L++ G +K++DFG R + P E
Sbjct: 132 RDIKGDNVLVNTYSGVVKISDFGTSK------------------RLAGINPCTE------ 167
Query: 705 GQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR--TGYTQLCDWWSVGV 762
+ GT Y+APEV+ + GY D WS+G
Sbjct: 168 ----------------------------TFTGTLQYMAPEVIDKGPRGYGAPADIWSLGC 199
Query: 763 ILYEMLVGSPPFLANTSAE-TQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLG 821
+ EM G PPF+ + +KV ++ IP LS E + IL+ C D
Sbjct: 200 TIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPES--LSAEAKNFILR-CFEPDPDKR 256
Query: 822 KNASEVKAHPF 832
+A ++ PF
Sbjct: 257 ASAHDLLQDPF 267
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 63.2 bits (153), Expect = 1e-10
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 55/202 (27%)
Query: 574 EVTLVRKIDTNHLYVMKGS--PHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL 631
E+T++ + D+ ++ GS L+ +M+Y+ GG + LL + G +E + E+
Sbjct: 52 EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLL-EPGPLDETQIATILREI 110
Query: 632 TCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQD 691
++ +H IHRDIK N+L+ G +KL DF
Sbjct: 111 LKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADF------------------------- 145
Query: 692 SMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGY 751
G GQ L + +R ++ VGTP ++APEV+ ++ Y
Sbjct: 146 ----------GVAGQ--------LTDTQIKR---------NTFVGTPFWMAPEVIKQSAY 178
Query: 752 TQLCDWWSVGVILYEMLVGSPP 773
D WS+G+ E+ G PP
Sbjct: 179 DSKADIWSLGITAIELAKGEPP 200
Score = 31.6 bits (71), Expect = 1.7
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 62 RVLKSILGESTTEVDNEIRLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEW 121
++ K GE +DN T + A+K + + +++ ++ E +L++ D+ +
Sbjct: 11 KIGKGSFGEVFKGIDNR-----TQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPY 63
Query: 122 VVKLYYSFQDKDNLYFVMDYIPG 144
V K Y S+ L+ +M+Y+ G
Sbjct: 64 VTKYYGSYLKDTKLWIIMEYLGG 86
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 62.5 bits (152), Expect = 1e-10
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 68/229 (29%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELT-CAVESVHKMGF------IHRDIK 649
+Y VM+ +PGG L++ L KK R + +L ++++ M + IHRD+
Sbjct: 67 IYIVMELVPGGSLLTFLRKKK------NRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLA 120
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
N L+ + +K++DFG+ R Y S+G +Q
Sbjct: 121 ARNCLVGENNVLKISDFGMS---REEEGGIYTVSDGL--KQ------------------- 156
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML- 768
P+K + APE L YT D WS G++L+E
Sbjct: 157 ---IPIK-----------------------WTAPEALNYGRYTSESDVWSYGILLWETFS 190
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGAD 817
+G P+ ++ +T+ ++ ES +PA QL PE ++ C D
Sbjct: 191 LGDTPYPGMSNQQTRERI---ESGYRMPA-PQLCPEEIYRLMLQCWAYD 235
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 63.3 bits (155), Expect = 1e-10
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
N++Y V + + DL ++ + ++++ ++ ++ +H IHRD+KP NIL
Sbjct: 77 NDVYIVTELMET-DLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNIL 135
Query: 655 IDRDGHIKLTDFGL 668
++ + +K+ DFGL
Sbjct: 136 VNSNCDLKICDFGL 149
Score = 47.1 bits (113), Expect = 2e-05
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 33/125 (26%)
Query: 740 YIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVI-------NWES 791
Y APE+LL + YT+ D WSVG I E+L P F + Q +I + E
Sbjct: 172 YRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYID-QLNLIVEVLGTPSEED 230
Query: 792 CLHIPAE-----------------AQL----SPEGADLILQ-LCTGADKRLGKNASEVKA 829
I +E ++L SPE DL+ + L KR+ A E A
Sbjct: 231 LKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRI--TADEALA 288
Query: 830 HPFFS 834
HP+ +
Sbjct: 289 HPYLA 293
Score = 30.6 bits (70), Expect = 3.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 456 IKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFGEVTLVRKI 500
+KPIG GA+G V T A+K I F ++ ++I
Sbjct: 5 LKPIGSGAYGVVCSAVDKRTGRKVAIKKISN---VFDDLIDAKRI 46
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 62.7 bits (152), Expect = 1e-10
Identities = 71/291 (24%), Positives = 115/291 (39%), Gaps = 70/291 (24%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTI-------YKCVGAFGEVTLVRKIDTNHLYVMKGSPHN 595
G +GEV+LVR YV+K + + A E L+ ++ ++ + S
Sbjct: 11 GSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEG 70
Query: 596 N---LYFVMDYIPGGDLMSLLI-KKG--IFEEPLARFYIAELTCAVESVHKMGFIHRDIK 649
LY VM + GGDL L +KG + E + +++ ++ A++ +H+ +HRD+K
Sbjct: 71 EDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFV-QIAMALQYLHEKHILHRDLK 129
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
N+ + R IK+ D G+
Sbjct: 130 TQNVFLTRTNIIKVGDLGIA---------------------------------------- 149
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV 769
R E+Q +A +L+GTP Y++PE+ Y D W++G +YEM
Sbjct: 150 ------------RVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMAT 197
Query: 770 GSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLI-LQLCTGADKR 819
F A Y++I E L P SPE +LI L +KR
Sbjct: 198 LKHAFNAKDMNSLVYRII--EGKLP-PMPKDYSPELGELIATMLSKRPEKR 245
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 62.8 bits (153), Expect = 2e-10
Identities = 52/196 (26%), Positives = 76/196 (38%), Gaps = 55/196 (28%)
Query: 588 VMKGSPHNNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHR 646
V+ G ++++ VM+Y DL SLL F E + + +L ++ +H+ IHR
Sbjct: 74 VVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHR 132
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
D+K N+L+ G +K+ DFGL
Sbjct: 133 DLKVSNLLLTDKGCLKIADFGL-------------------------------------- 154
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILY 765
R P KP+ + V T Y APE+LL T YT D W+VG IL
Sbjct: 155 -ARTYGLPAKPMTPK-------------VVTLWYRAPELLLGCTTYTTAIDMWAVGCILA 200
Query: 766 EMLVGSPPFLANTSAE 781
E+L P + E
Sbjct: 201 ELLAHKPLLPGKSEIE 216
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 62.5 bits (152), Expect = 2e-10
Identities = 51/184 (27%), Positives = 67/184 (36%), Gaps = 54/184 (29%)
Query: 596 NLYFVMDYIPGGDLMSLLIKKGI-FEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
Y V +Y+ DLM LL + F E + ++ +L + HK F+HRDIK NIL
Sbjct: 90 AFYLVFEYM-DHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNIL 148
Query: 655 IDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSP 714
++ G IKL DFG
Sbjct: 149 LNNKGQIKLADFG----------------------------------------------- 161
Query: 715 LKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSPP 773
L R E R + ++ T Y PE+LL Y D WS G IL E+ P
Sbjct: 162 ---LARLYNSEESRPYTNKVI-TLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPI 217
Query: 774 FLAN 777
F AN
Sbjct: 218 FQAN 221
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 61.6 bits (149), Expect = 3e-10
Identities = 61/250 (24%), Positives = 93/250 (37%), Gaps = 71/250 (28%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTI---------YKCVGAFG-EVTLVRKIDTNHLY----V 588
G FGEV L DT +K + K V A E+ L++ + + +
Sbjct: 13 GAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGC 72
Query: 589 MKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDI 648
++ L ++Y+PGG + L G E + R Y ++ V +H +HRDI
Sbjct: 73 LRDPEEKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDI 132
Query: 649 KPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
K NIL D G++KL GD G
Sbjct: 133 KGANILRDSAGNVKL---------------------GDFGAS------------------ 153
Query: 709 RCINSPLKPLERRRRREHQRCLA----HSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL 764
+R C++ S+ GTP +++PEV+ GY + D WSV +
Sbjct: 154 --------------KRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTV 199
Query: 765 YEMLVGSPPF 774
EML PP+
Sbjct: 200 VEMLTEKPPW 209
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 61.9 bits (150), Expect = 3e-10
Identities = 59/243 (24%), Positives = 92/243 (37%), Gaps = 64/243 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVG-------AFGEVTLVRKIDTNHLYVMKGS--P 593
G +G V R +T + +K E+ ++R + ++ +K +
Sbjct: 12 GAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRR 71
Query: 594 HNNLYFVMDYIPGGDLMSLL--IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
LY V +Y+ +++ LL + G+ E + R YI +L A+ HK +HRDIKP+
Sbjct: 72 RGKLYLVFEYVEK-NMLELLEEMPNGVPPEKV-RSYIYQLIKAIHWCHKNDIVHRDIKPE 129
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
N+LI + +KL DFG N+ Y +
Sbjct: 130 NLLISHNDVLKLCDFGFARNLSEGSNANYTE----------------------------- 160
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGS 771
V T Y +PE+LL Y + D WSVG IL E+ G
Sbjct: 161 ----------------------YVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQ 198
Query: 772 PPF 774
P F
Sbjct: 199 PLF 201
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 61.3 bits (149), Expect = 4e-10
Identities = 48/175 (27%), Positives = 62/175 (35%), Gaps = 62/175 (35%)
Query: 601 MDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGH 660
+D +P G M + L + Y+ ++ + H +HRD+KP N+LID G
Sbjct: 89 LDSLPKGQYM---------DAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGV 139
Query: 661 IKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLER 720
IKL DFGL F G P
Sbjct: 140 IKLADFGLARAF-----------------------------GIP---------------- 154
Query: 721 RRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSPPF 774
R H +V T Y APEVLL Y+ D WS+G I EM P F
Sbjct: 155 ------VRVYTHEVV-TLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLF 202
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 60.8 bits (148), Expect = 6e-10
Identities = 54/193 (27%), Positives = 77/193 (39%), Gaps = 55/193 (28%)
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR-QDSMEPSEEWSQG 702
IHRD+KP NIL+DR+G+IKL DFG+ G+ DS+ + +
Sbjct: 130 IHRDVKPSNILLDRNGNIKLCDFGIS------------------GQLVDSIAKTRDAG-- 169
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
CR +P ER I P R GY D WS+G+
Sbjct: 170 -----CRPYMAP----ER--------------------IDPSA--RDGYDVRSDVWSLGI 198
Query: 763 ILYEMLVGSPPFLA-NTSAETQYKVINWES-CLHIPAEAQLSPEGADLILQLCTGADKRL 820
LYE+ G P+ N+ + +V+ + L E + SP + I LC D+
Sbjct: 199 TLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFI-NLCLIKDESK 257
Query: 821 GKNASEVKAHPFF 833
E+ HPF
Sbjct: 258 RPKYKELLEHPFI 270
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 60.8 bits (148), Expect = 8e-10
Identities = 75/362 (20%), Positives = 123/362 (33%), Gaps = 108/362 (29%)
Query: 511 IYKCVGAFGEVTLVRKIDTNHLYVMKTIY-------KCVGVFGEVTLVRKIDTNHLYVMK 563
I KC V L + TN L +K I + E+ R++ H
Sbjct: 6 IGKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQL--QH----P 59
Query: 564 TIYKCVGAFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPL 623
I V +F I + LYV + +M Y DL+ +G E
Sbjct: 60 NILPYVTSF--------IVDSELYV--------VSPLMAYGSCEDLLKTHFPEG-LPELA 102
Query: 624 ARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQS 683
F + ++ A++ +H GFIHR +K +IL+ DG + L +G R++
Sbjct: 103 IAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVL------SGLRYSV------- 149
Query: 684 NGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAP 743
SM G+ R ++ + + L +++P
Sbjct: 150 --------SMIKH--------GKRQRVVHDF--------PKSSVKNL--------PWLSP 177
Query: 744 EVLLRT--GYTQLCDWWSVGV-------------------ILYEMLVGSPPFLANTSAET 782
EVL + GY + D +SVG+ +L E + G+ P L + S
Sbjct: 178 EVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYP 237
Query: 783 QYK--VINWESCL---------HIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHP 831
Y+ + S P S ++LC D +AS++ H
Sbjct: 238 LYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQF-VELCLQRDPESRPSASQLLNHS 296
Query: 832 FF 833
FF
Sbjct: 297 FF 298
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 60.0 bits (145), Expect = 1e-09
Identities = 63/259 (24%), Positives = 102/259 (39%), Gaps = 65/259 (25%)
Query: 595 NNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNI 653
NNL+ ++++ GG + +++++ + EP R + A+ +H+ IHRD+K NI
Sbjct: 75 NNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNI 134
Query: 654 LIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINS 713
L DG IKL DFG+ N++ Q
Sbjct: 135 LFTLDGDIKLADFGVS-----AKNTRTIQ------------------------------- 158
Query: 714 PLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-----RTGYTQLCDWWSVGVILYEML 768
RR+ S +GTP ++APEV++ Y D WS+G+ L EM
Sbjct: 159 ---------RRD-------SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA 202
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADL--ILQLCTGADKRLGKNASE 826
PP K+ E P AQ S ++ L+ C + ++
Sbjct: 203 QIEPPHHELNPMRVLLKIAKSEP----PTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQ 258
Query: 827 VKAHPFFSNVDFEKGVRTL 845
+ HPF + V+ K +R L
Sbjct: 259 LLQHPFVT-VNSNKPIREL 276
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 59.2 bits (144), Expect = 2e-09
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 32/146 (21%)
Query: 542 VGVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGSPHNN----- 596
G +G+V R I T L +K I K + ++I ++K H N
Sbjct: 13 SGTYGDVYKARDIATGELVAIKVI-KLEPGDDFEIIQQEIS-----MLKECRHPNIVAYF 66
Query: 597 --------LYFVMDYIPGG---DLMSLLIKKGIFEEPLARFYIAELTCAV----ESVHKM 641
L+ VM+Y GG D+ + PL+ IA + +H+
Sbjct: 67 GSYLRRDKLWIVMEYCGGGSLQDIYQVT------RGPLSELQIAYVCRETLKGLAYLHET 120
Query: 642 GFIHRDIKPDNILIDRDGHIKLTDFG 667
G IHRDIK NIL+ DG +KL DFG
Sbjct: 121 GKIHRDIKGANILLTEDGDVKLADFG 146
Score = 52.3 bits (126), Expect = 4e-07
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 733 SLVGTPNYIAPEVL---LRTGYTQLCDWWSVGVILYEMLVGSPP 773
S +GTP ++APEV + GY CD W++G+ E+ PP
Sbjct: 160 SFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPP 203
Score = 31.5 bits (72), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 450 KSMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
+ + I+ IG G +G+V R I T L A+K I
Sbjct: 2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVI 36
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 59.8 bits (145), Expect = 2e-09
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
SP ++YFV + + G DL LL E+ ++++ ++ ++ VH G +HRD+KP
Sbjct: 80 SPLEDIYFVTELL-GTDLHRLL-TSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPS 137
Query: 652 NILIDRDGHIKLTDFGLC-------TGFRWTHNSKYYQSNGDH-GRQDSMEPSEEWSQGT 703
NILI+ + +K+ DFGL TG+ T +YY++ Q + WS G
Sbjct: 138 NILINENCDLKICDFGLARIQDPQMTGYVST---RYYRAPEIMLTWQKYDVEVDIWSAG- 193
Query: 704 PGQECRCINSPL---KPLERRRRREHQRCLAHSLVGTP-----NYIAPEVLLR 748
CI + + KPL + +Q + L+GTP N I E LR
Sbjct: 194 ------CIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLR 240
Score = 35.2 bits (81), Expect = 0.15
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 735 VGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGSPPF 774
V T Y APE++L Y D WS G I EML G P F
Sbjct: 166 VSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLF 206
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 60.0 bits (145), Expect = 2e-09
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 57/205 (27%)
Query: 601 MDYIPGGDLMSLLIKKG-IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDG 659
M+++ GG L +L K G I E+ L + IA + K +HRD+KP NIL++ G
Sbjct: 82 MEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG 141
Query: 660 HIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLE 719
IKL DF G GQ I+S
Sbjct: 142 EIKLCDF-----------------------------------GVSGQ---LIDS------ 157
Query: 720 RRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTS 779
+A+S VGT +Y++PE L T Y+ D WS+G+ L EM +G P +
Sbjct: 158 ----------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDA 207
Query: 780 AETQYKVINWESCLHIPAEAQLSPE 804
E + ++ PAE++ SP
Sbjct: 208 KELE--LMFGCPVEGDPAESETSPR 230
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 58.9 bits (143), Expect = 3e-09
Identities = 87/359 (24%), Positives = 126/359 (35%), Gaps = 117/359 (32%)
Query: 498 RKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKTIYKCVGVFGEVTLVRKIDTN 557
D N L + I G G+V +R T H+ +K + + ++ +D
Sbjct: 10 YPADLNDLENLGEIGS--GTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDV- 66
Query: 558 HLYVMKT-----IYKCVGAFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMS- 611
V+K+ I KC G F +T D++ M +LMS
Sbjct: 67 ---VLKSHDCPYIVKCYGYF--IT-----DSDVFICM------------------ELMST 98
Query: 612 ----LL--IKKGIFEEPLARFYIAELTCAVESVH----KMGFIHRDIKPDNILIDRDGHI 661
LL I+ I E+ L + +A V+++H K G IHRD+KP NIL+D G++
Sbjct: 99 CLDKLLKRIQGPIPEDILGKMTVA----IVKALHYLKEKHGVIHRDVKPSNILLDASGNV 154
Query: 662 KLTDFGLCTGFRWTHNSKYYQSNGDHGRQ-DSMEPSEEWSQGTPGQECRCINSPLKPLER 720
KL DF G GR DS
Sbjct: 155 KLCDF------------------GISGRLVDSK--------------------------- 169
Query: 721 RRRREHQRCLAHS-LVGTPNYIAPEVL----LRTGYTQLCDWWSVGVILYEMLVGSPPF- 774
A + G Y+APE + Y D WS+G+ L E+ G P+
Sbjct: 170 ----------AKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYK 219
Query: 775 LANTSAETQYKVINWES-CLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHPF 832
T E K++ E L P SP+ + LC D R E+ HPF
Sbjct: 220 NCKTEFEVLTKILQEEPPSL--PPNEGFSPDFCSF-VDLCLTKDHRKRPKYRELLQHPF 275
Score = 29.6 bits (67), Expect = 7.4
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 444 KRAKMDKSMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFGEVTLVRKIDTN 503
++ D + + IG G G+V +R T H+ A+K + + ++ +D
Sbjct: 8 QKYPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDV- 66
Query: 504 HLYVMKT-----IYKCVGAF 518
V+K+ I KC G F
Sbjct: 67 ---VLKSHDCPYIVKCYGYF 83
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 58.9 bits (143), Expect = 3e-09
Identities = 59/226 (26%), Positives = 77/226 (34%), Gaps = 85/226 (37%)
Query: 639 HKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEE 698
H+ +HRD+KP N+LI G +KL DFGL R S+ PS+
Sbjct: 120 HQRRVLHRDLKPQNLLISERGELKLADFGL-------------------ARAKSV-PSKT 159
Query: 699 WSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDW 757
+S + +V T Y P+VLL T Y+ D
Sbjct: 160 YS-------------------------------NEVV-TLWYRPPDVLLGSTEYSTSLDM 187
Query: 758 WSVGVILYEMLVGSPPFLANTSAETQYKVI----------NWESCLHIPAEAQLS----- 802
W VG I YEM G P F +T E Q I W P S
Sbjct: 188 WGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYP 247
Query: 803 --------------PEGADLILQLCTG-ADKRLGKNASEVKAHPFF 833
P G +L L+ KR+ A+E HP+F
Sbjct: 248 PRPLINHAPRLDRIPHGEELALKFLQYEPKKRIS--AAEAMKHPYF 291
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 60.7 bits (147), Expect = 3e-09
Identities = 39/190 (20%), Positives = 55/190 (28%), Gaps = 11/190 (5%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P P P A P P A + P+ + P + P P
Sbjct: 2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP-----AAGPPRRLTRPA 2787
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKP-SLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP 261
A S ++ P + V P + A + P + Q P PP P P
Sbjct: 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847
Query: 262 TTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASS 321
+ P S R P + PA P ++R P SRS +
Sbjct: 2848 PSLPLG-GSVAPGGDVRRRP----PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP 2902
Query: 322 TESRTPPLPP 331
+ PP P
Sbjct: 2903 DQPERPPQPQ 2912
Score = 59.2 bits (143), Expect = 1e-08
Identities = 41/203 (20%), Positives = 58/203 (28%), Gaps = 25/203 (12%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP---TRP 199
P P P P P P P SPS P P P
Sbjct: 2608 PRGPAPPSPLPPDTHAPDP-----------PPPSPSPAANEPDPHPPPTVPPPERPRDDP 2656
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTS----PPSYSSSIQQQQQKPQ 255
AP + R+A+ S ++ + + + + PP +P
Sbjct: 2657 APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPP-----PPPTPEPA 2711
Query: 256 PPSPVPTTE-PPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSE 314
P + V T PP A+ QA A T PA P + + G
Sbjct: 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARP-ARPPTTAGPPAPA 2770
Query: 315 SPASASSTESRTPPLPPTTSSSV 337
PA+ ++ R P S S
Sbjct: 2771 PPAAPAAGPPRRLTRPAVASLSE 2793
Score = 54.9 bits (132), Expect = 2e-07
Identities = 44/198 (22%), Positives = 60/198 (30%), Gaps = 13/198 (6%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P L P SPA PPP S + PS + G PP+R
Sbjct: 2814 PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA- 2872
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
+ A +P V + + V + + A+ P P +PQP P P
Sbjct: 2873 ---AKPAAPARPPV--RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
Query: 263 TEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGD---SRSESPASA 319
P +A + P + P L PG R P A
Sbjct: 2928 QPQP--PPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL--GALVPGRVAVPRFRVPQPA 2983
Query: 320 SSTESRTPPLPPTTSSSV 337
S E+ PP T S+
Sbjct: 2984 PSREAPASSTPPLTGHSL 3001
Score = 51.9 bits (124), Expect = 2e-06
Identities = 38/192 (19%), Positives = 58/192 (30%), Gaps = 14/192 (7%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P P P P P SA+ P++ + P +P PP PA
Sbjct: 2702 PPPPPTPEPAPHALVSAT-----PLPPGPAAARQASPALPAAP--APPAVPAGPATPGGP 2754
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
+P P P+ + P+ +S + ++ P P P
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA 2813
Query: 269 ASTMQALATSRVATISIPESNTTTTTTTPAHPL-----LQRKFSP-GDSRSESPASASST 322
+ A S + P S T P P L +P GD R P+ + +
Sbjct: 2814 PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA 2873
Query: 323 ESRTPPLPPTTS 334
+ P PP
Sbjct: 2874 KPAAPARPPVRR 2885
Score = 51.9 bits (124), Expect = 2e-06
Identities = 45/194 (23%), Positives = 57/194 (29%), Gaps = 26/194 (13%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA-PLQAWSSRQ 209
P +A P PP S + G G PS P +PA P + R
Sbjct: 2830 PPTSAQPTAPPPPPGPPPPSLPLGGSVAPG---GDVRRRPPSRSPAAKPAAPARPPVRRL 2886
Query: 210 AKTQPVVIMQSVKSTPVQKPSLQTAIAPTSP--------PSYSSSIQQQQQKPQPPSPVP 261
A+ +S P Q AP P P +PQPP P
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP-LAP 2945
Query: 262 TTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASS 321
TT+P A+ + + +P P P SR A ASS
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGAL-VPGRVAVPRFRVP---------QPAPSR---EAPASS 2992
Query: 322 TESRTPPLPPTTSS 335
T T SS
Sbjct: 2993 TPPLTGHSLSRVSS 3006
Score = 48.8 bits (116), Expect = 2e-05
Identities = 42/214 (19%), Positives = 54/214 (25%), Gaps = 27/214 (12%)
Query: 149 PYPSPAAAPPPP------------PSYSASIQSRQSPTQSPSSGIY--SGPGSTGS---- 190
P PPP A R + SP + + GS
Sbjct: 2639 DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698
Query: 191 ---PSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKS---TPVQKPSLQTAIAPTSP-PSY 243
P P P PAP S+ P Q+ + P P P
Sbjct: 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA 2758
Query: 244 SSSIQQQQQKPQPPSPVPTTEPPSY-ASTMQALATSRVATISIPESNTTTTTTTPAHPLL 302
P PP+ P + +L+ SR + S + L
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818
Query: 303 QRKFSPGDSRSESPASASSTESRTPPLPPTTSSS 336
SP P SA T PP PP S
Sbjct: 2819 PPAASPA-GPLPPPTSAQPTAPPPPPGPPPPSLP 2851
Score = 48.0 bits (114), Expect = 3e-05
Identities = 42/199 (21%), Positives = 57/199 (28%), Gaps = 19/199 (9%)
Query: 148 IPYPSPAAAPPPPPSYSASIQSRQS-PTQSPSSGIYSGPG-------STGSPSPIPPTRP 199
+P P PA P P ++ SR P P S P PSP+PP
Sbjct: 2568 VPPPRPAPRPSEP-----AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTH 2622
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP 259
AP S P ++P A S P + + Q SP
Sbjct: 2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR---LGRAAQASSP 2679
Query: 260 VPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASA 319
+ T+ +L + P A PL P +R SPA
Sbjct: 2680 PQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPL---PPGPAAARQASPALP 2736
Query: 320 SSTESRTPPLPPTTSSSVN 338
++ P P T
Sbjct: 2737 AAPAPPAVPAGPATPGGPA 2755
Score = 43.4 bits (102), Expect = 7e-04
Identities = 44/214 (20%), Positives = 60/214 (28%), Gaps = 58/214 (27%)
Query: 149 PYPSPAAAPPPPPS---------------------------YSASIQSRQSPTQSPSSGI 181
P PA PPPP+ Y R+ PT +P S +
Sbjct: 306 PLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSL 365
Query: 182 YS-GPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSP 240
G PTR + S+R A T P P S
Sbjct: 366 EDLSAGRHHPKRASLPTR----KRRSARHAAT-PFARGPGGDDQTRPAAP-----VPASV 415
Query: 241 PSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHP 300
P+ + + P P +P+P+ EP S PE T PA
Sbjct: 416 PTPAPTPVPASAPPPPATPLPSAEPGSDDGPA-----------PPPERQPPAPATEPAPD 464
Query: 301 LLQRKFSPGDSRSESPASASSTESRTPPLPPTTS 334
P D+ + + + R PP PP
Sbjct: 465 ------DPDDA---TRKALDALRERRPPEPPGAD 489
Score = 41.5 bits (97), Expect = 0.002
Identities = 41/192 (21%), Positives = 54/192 (28%), Gaps = 31/192 (16%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP------TRP-AP 201
P P P AAPP P R P P+ P P P RP AP
Sbjct: 2552 PPPLPPAAPPAAPD-------RSVPPPRPA------------PRPSEPAVTSRARRPDAP 2592
Query: 202 LQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP 261
Q+ R PV + P AP PP S + P VP
Sbjct: 2593 PQSARPRA----PVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP-PTVP 2647
Query: 262 TTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASS 321
E P ++ R A + ++ P + S ++ P +
Sbjct: 2648 PPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT 2707
Query: 322 TESRTPPLPPTT 333
E L T
Sbjct: 2708 PEPAPHALVSAT 2719
Score = 40.7 bits (95), Expect = 0.005
Identities = 41/215 (19%), Positives = 53/215 (24%), Gaps = 38/215 (17%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGI-----------------YSGP 185
P P P A P P SR +P P + +
Sbjct: 2496 PDPGGGGPPDPDAPPAP---------SRLAPAILPDEPVGEPVHPRMLTWIRGLEELASD 2546
Query: 186 GSTGSPSPIPPTRPAPLQAWS---SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPS 242
+ P P+PP P S R A + S P P AP
Sbjct: 2547 DAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR- 2605
Query: 243 YSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLL 302
P PP +PP + + A ++P P
Sbjct: 2606 -GDPRGPAPPSPLPPDTHA-PDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
Query: 303 QRKFSPGDSRSESPASASSTES--RTPPLPPTTSS 335
R+ R A ASS R PT S
Sbjct: 2664 PRR----ARRLGRAAQASSPPQRPRRRAARPTVGS 2694
Score = 38.0 bits (88), Expect = 0.027
Identities = 46/213 (21%), Positives = 67/213 (31%), Gaps = 43/213 (20%)
Query: 165 ASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKST 224
A + R + + P + + P G P P PAP SR A P ++
Sbjct: 2477 APVYRRPAEARFPFAA-GAAPDPGGGGPPDPDAPPAP-----SRLA---PAILPDEPVGE 2527
Query: 225 PVQKPSLQTAI--------------APTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYAS 270
PV P + T I P PP+ + + P P+P P+ EP
Sbjct: 2528 PVH-PRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPS-EPA---- 2581
Query: 271 TMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLP 330
TSR P + P GD R +P S ++ P P
Sbjct: 2582 -----VTSRARRPDAPPQ--SARPRAPVDD-------RGDPRGPAPPSPLPPDTHAPDPP 2627
Query: 331 PTTSSSVNNKNMTNGTGGGRTYKINHQSPIPER 363
P + S N+ + + P P R
Sbjct: 2628 PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGR 2660
Score = 31.8 bits (72), Expect = 2.2
Identities = 31/187 (16%), Positives = 57/187 (30%), Gaps = 38/187 (20%)
Query: 172 SPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSL 231
P + + G+ P PP A + A V ++ P+ P+
Sbjct: 258 PPVVGEGADRAPET-ARGATGPPPPPEAAA----PNGAAAPPDGVWGAALAGAPLALPA- 311
Query: 232 QTAIAPTSPPSYSSSIQQQQQKP----QPPSPV----------------PTTEPPSYAST 271
P PP + +++ + SP+ PT PP S+
Sbjct: 312 ----PPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPP---SS 364
Query: 272 MQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTP-PLP 330
++ L+ R P+ + T + F+ G + A+ + P P P
Sbjct: 365 LEDLSAGR----HHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAP 420
Query: 331 PTTSSSV 337
+S
Sbjct: 421 TPVPASA 427
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 58.3 bits (141), Expect = 3e-09
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTI-------YKCVGAFGEVTLVRKIDTNHL--YVMKGSP 593
G FG V L R+ L ++K I + + A E +++ + ++ Y
Sbjct: 11 GAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE 70
Query: 594 HNNLYFVMDYIPGGDLMSLLIKKG--IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
L VM+Y PGG L + K+ + +E + ++ A+ VH +HRD+K
Sbjct: 71 DKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQ 130
Query: 652 NILIDRDGHI-KLTDFGL 668
NIL+D+ + K+ DFG+
Sbjct: 131 NILLDKHKMVVKIGDFGI 148
Score = 49.5 bits (118), Expect = 3e-06
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 731 AHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWE 790
A+++VGTP YI+PE+ Y Q D W++G +LYE+ F A K++
Sbjct: 158 AYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIM--- 214
Query: 791 SCLHIPAEAQLSPEGADLILQ-LCTGADKRLGKNASEVKAHP 831
S P + SP+ LIL L KR S++ A P
Sbjct: 215 SGTFAPISDRYSPDLRQLILSMLNLDPSKR--PQLSQIMAQP 254
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 58.2 bits (141), Expect = 5e-09
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 58/202 (28%)
Query: 574 EVTLVRKIDTNHLYVMKG---SPH-NNLYFVMDYIPGGDLMSLL--IKKGIFEEPLARFY 627
E+ ++R +D ++ KG P +L +M+Y+P G L L + I + L F
Sbjct: 56 EIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLF- 114
Query: 628 IAELTC-AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGD 686
+ C ++ + +IHRD+ NIL++ + +K++DFGL + YY
Sbjct: 115 -SSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVL--PEDKDYYYVK-- 169
Query: 687 HGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL 746
EP E SP+ + APE L
Sbjct: 170 -------EPGE---------------SPIF-----------------------WYAPECL 184
Query: 747 LRTGYTQLCDWWSVGVILYEML 768
+ ++ D WS GV LYE+
Sbjct: 185 RTSKFSSASDVWSFGVTLYELF 206
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 58.5 bits (141), Expect = 6e-09
Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 56/192 (29%)
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
++Y VM+ + + +I + E ++ + + ++ C ++ +H G IHRD+KP NI++
Sbjct: 100 DVYLVMELMDAN--LCQVIHMELDHERMS-YLLYQMLCGIKHLHSAGIIHRDLKPSNIVV 156
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPL 715
D +K+ DFGL C N +
Sbjct: 157 KSDCTLKILDFGLA-------------------------------------RTACTNFMM 179
Query: 716 KPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFL 775
P V T Y APEV+L GY + D WSVG I+ E++ GS F
Sbjct: 180 TPY----------------VVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQ 223
Query: 776 ANTSAETQYKVI 787
+ KVI
Sbjct: 224 GTDHIDQWNKVI 235
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 58.0 bits (140), Expect = 6e-09
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 58/181 (32%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
N + +++ GG SL + + I E L R +A + + + + +HRD+KP N+L
Sbjct: 72 NRISICTEFMDGG---SLDVYRKIPEHVLGRIAVAVVK-GLTYLWSLKILHRDVKPSNML 127
Query: 655 IDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSP 714
++ G +KL DFG+ T + +NS
Sbjct: 128 VNTRGQVKLCDFGVST--------------------------------------QLVNS- 148
Query: 715 LKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPF 774
+A + VGT Y+APE + Y D WS+G+ E+ +G P+
Sbjct: 149 ---------------IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPY 193
Query: 775 L 775
Sbjct: 194 P 194
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 57.9 bits (140), Expect = 6e-09
Identities = 69/305 (22%), Positives = 111/305 (36%), Gaps = 97/305 (31%)
Query: 571 AFGEVTLVRKIDTNHLYVMKGSPHNN--LYFVMDYIPGGDLMSLLIKKGIFEEP------ 622
A E++L++++ ++ ++ H+ LY V +Y + L +KK + P
Sbjct: 48 AIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEY------LDLDLKKHMDSSPDFAKNP 101
Query: 623 -LARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGH-IKLTDFGLCTGFRWTHNSKY 680
L + Y+ ++ + H +HRD+KP N+LIDR + +KL DFGL F
Sbjct: 102 RLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF-------- 153
Query: 681 YQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNY 740
G P R H +V T Y
Sbjct: 154 ---------------------GIP----------------------VRTFTHEVV-TLWY 169
Query: 741 IAPEVLLRT-GYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVIN---------WE 790
APE+LL + Y+ D WSVG I EM+ P F ++ + +K+ W
Sbjct: 170 RAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWP 229
Query: 791 SCLHIP----------------AEAQLSPEGADLILQ-LCTGADKRLGKNASEVKAHPFF 833
+P L P G DL+ + L KR+ A H +F
Sbjct: 230 GVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRI--TARAALEHEYF 287
Query: 834 SNVDF 838
++
Sbjct: 288 KDLGD 292
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 57.8 bits (140), Expect = 7e-09
Identities = 65/257 (25%), Positives = 92/257 (35%), Gaps = 72/257 (28%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYK-------CVGAFGEVTLVRKIDTNHLYVM------ 589
G FGEV R T + +K + + A E+ +++ + H V+
Sbjct: 23 GTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLL--KHENVVNLIEIC 80
Query: 590 --KGSPHNN----LYFVMDYIPGGDLMSLLIKKGI-FEEPLARFYIAELTCAVESVHKMG 642
K +P+N Y V ++ DL LL K + F + + L + +H+
Sbjct: 81 RTKATPYNRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNK 139
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
+HRD+K NILI +DG +KL DFGL F + NSK
Sbjct: 140 ILHRDMKAANILITKDGILKLADFGLARAFSLSKNSK----------------------- 176
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVG 761
R R V T Y PE+LL Y D W G
Sbjct: 177 -------------------PNRYTNR------VVTLWYRPPELLLGERDYGPPIDMWGAG 211
Query: 762 VILYEMLVGSPPFLANT 778
I+ EM SP NT
Sbjct: 212 CIMAEMWTRSPIMQGNT 228
Score = 30.0 bits (68), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 449 DKSMFIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTI 484
+ S + K+ IG G FGEV R T + A+K +
Sbjct: 10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKV 45
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 58.1 bits (140), Expect = 7e-09
Identities = 52/174 (29%), Positives = 73/174 (41%), Gaps = 55/174 (31%)
Query: 601 MDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDG 659
M+++ GG L +L + K I EE L + IA L K +HRD+KP NIL++ G
Sbjct: 82 MEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRG 141
Query: 660 HIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLE 719
IKL DF G GQ I+S
Sbjct: 142 EIKLCDF-----------------------------------GVSGQ---LIDS------ 157
Query: 720 RRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPP 773
+A+S VGT +Y++PE L T Y+ D WS+G+ L E+ +G P
Sbjct: 158 ----------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYP 201
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 57.6 bits (139), Expect = 9e-09
Identities = 55/249 (22%), Positives = 89/249 (35%), Gaps = 66/249 (26%)
Query: 543 GVFGEVTLVR----KIDTNHLYVMKTIYKCVGAF------GEVTLVRKIDTNHLYVMKG- 591
G FG+V+L T + +KT+ + G E+ +++ + ++ KG
Sbjct: 15 GHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGC 74
Query: 592 ---SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTC-AVESVHKMGFIHRD 647
L +M+Y+P G L L K + L F A+ C + +H +IHRD
Sbjct: 75 CSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLF--AQQICEGMAYLHSQHYIHRD 132
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQE 707
+ N+L+D D +K+ DFGL H + +GD
Sbjct: 133 LAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGD--------------------- 171
Query: 708 CRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM 767
SP+ + A E L ++ D WS GV LYE+
Sbjct: 172 -----SPV-----------------------FWYAVECLKENKFSYASDVWSFGVTLYEL 203
Query: 768 LVGSPPFLA 776
L +
Sbjct: 204 LTHCDSKQS 212
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 57.5 bits (139), Expect = 1e-08
Identities = 53/242 (21%), Positives = 92/242 (38%), Gaps = 75/242 (30%)
Query: 551 VRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVM------KGSPHNN-------- 596
V+KI V+ A E+ ++R++D +++ + GS
Sbjct: 35 VKKI------VLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTEL 88
Query: 597 --LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
+Y V +Y+ DL ++L ++G E AR ++ +L ++ +H +HRD+KP N+
Sbjct: 89 NSVYIVQEYMET-DLANVL-EQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVF 146
Query: 655 IDRDGHI-KLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINS 713
I+ + + K+ DFGL ++ + H S +W
Sbjct: 147 INTEDLVLKIGDFGL---------ARIVDPHYSHKGYLSEGLVTKW-------------- 183
Query: 714 PLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGSP 772
Y +P +LL YT+ D W+ G I EML G P
Sbjct: 184 --------------------------YRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKP 217
Query: 773 PF 774
F
Sbjct: 218 LF 219
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 57.7 bits (139), Expect = 1e-08
Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 56/192 (29%)
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
++Y VM+ + + +I+ + E ++ + + ++ C ++ +H G IHRD+KP NI++
Sbjct: 103 DVYIVMELMDAN--LCQVIQMELDHERMS-YLLYQMLCGIKHLHSAGIIHRDLKPSNIVV 159
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPL 715
D +K+ DFGL G M P
Sbjct: 160 KSDCTLKILDFGLAR---------------TAGTSFMMTPY------------------- 185
Query: 716 KPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFL 775
V T Y APEV+L GY + D WSVG I+ EM+ G F
Sbjct: 186 -------------------VVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP 226
Query: 776 ANTSAETQYKVI 787
+ KVI
Sbjct: 227 GTDHIDQWNKVI 238
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 56.9 bits (137), Expect = 1e-08
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 61/199 (30%)
Query: 597 LYFVMDYIPGGDLMSL---LIKKGI-FEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
L+ V++ GG + L L+ G +E + + + ++ +H IHRD+K +N
Sbjct: 99 LWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNN 158
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
IL+ +G +KL DFG+ T
Sbjct: 159 ILLTTEGGVKLVDFGVSAQLTST------------------------------------- 181
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVL-----LRTGYTQLCDWWSVGVILYEM 767
R RR ++ VGTP ++APEV+ Y CD WS+G+ E+
Sbjct: 182 -------RLRR--------NTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIEL 226
Query: 768 LVGSPPFLANTSAETQYKV 786
G PP +T +K+
Sbjct: 227 GDGDPPLFDMHPVKTLFKI 245
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 57.4 bits (138), Expect = 2e-08
Identities = 39/144 (27%), Positives = 54/144 (37%), Gaps = 51/144 (35%)
Query: 625 RFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSN 684
R + +L CAVE +H IHRDIK +NI ++ DG I L DFG F
Sbjct: 270 RAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFE----------- 318
Query: 685 GDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPE 744
+ + + VGT +PE
Sbjct: 319 ----------------------------KEREAFD------------YGWVGTVATNSPE 338
Query: 745 VLLRTGYTQLCDWWSVGVILYEML 768
+L GY ++ D WS G+IL +ML
Sbjct: 339 ILAGDGYCEITDIWSCGLILLDML 362
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 56.2 bits (135), Expect = 2e-08
Identities = 63/253 (24%), Positives = 94/253 (37%), Gaps = 88/253 (34%)
Query: 625 RFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSN 684
+ ++ +L + H+ +HRD+KP N+LI+ G +KL DFGL
Sbjct: 107 KLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGL---------------- 150
Query: 685 GDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPE 744
R S+ P++ +S V T Y P+
Sbjct: 151 ---ARAKSI-PTKTYSNE--------------------------------VVTLWYRPPD 174
Query: 745 VLL-RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAET--------------------- 782
+LL T Y+ D W VG I YEM G P F +T E
Sbjct: 175 ILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILS 234
Query: 783 --QYKVINW----ESCLHIPAEAQLSPEGADLILQLCT-GADKRLGKNASEVKAHPFFSN 835
++K N+ CLH A +L +GA+L+ +L KR+ +A E HP+F
Sbjct: 235 NEEFKSYNYPKYRADCLHNHA-PRLDSDGAELLSKLLQFEGRKRI--SAEEAMKHPYFHC 291
Query: 836 VDFEKGVRTLTPP 848
+ G R P
Sbjct: 292 L----GERIHKLP 300
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 56.1 bits (135), Expect = 3e-08
Identities = 57/204 (27%), Positives = 78/204 (38%), Gaps = 57/204 (27%)
Query: 597 LYFVMDYIPGGDLMSLLIKK-GIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
L FV +Y+ DL +I+ G R ++ +L + +H +HRD+KP N+LI
Sbjct: 78 LTFVFEYMHT-DLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLI 136
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPL 715
G +KL DFGL R S+ PS+ +S
Sbjct: 137 SYLGELKLADFGL-------------------ARAKSI-PSQTYS--------------- 161
Query: 716 KPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSPPF 774
S V T Y P+VLL T Y+ D W G I EML G P F
Sbjct: 162 -----------------SEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAF 204
Query: 775 LANTSAETQYKVINWESCLHIPAE 798
+ Q + I W L +P E
Sbjct: 205 PGVSDVFEQLEKI-WT-VLGVPTE 226
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 57.2 bits (138), Expect = 3e-08
Identities = 48/215 (22%), Positives = 73/215 (33%), Gaps = 62/215 (28%)
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
+P L+ V +Y+PG L +L G + ++ A+ H G +HRD+KP
Sbjct: 49 APPGLLFAVFEYVPGRTLREVLAADGALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQ 108
Query: 652 NILIDRDG---HIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQEC 708
NI++ + G H K+ DFG+ T ++
Sbjct: 109 NIMVSQTGVRPHAKVLDFGIGTLLPGVRDAD----------------------------- 139
Query: 709 RCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 768
++GTP Y APE L T D ++ G+I E L
Sbjct: 140 ----------------VATLTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECL 183
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSP 803
G + AE Y+ QLSP
Sbjct: 184 TGQRVVQGASVAEILYQ--------------QLSP 204
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 55.4 bits (133), Expect = 4e-08
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 72/252 (28%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKT----------IYKCVGAFGEVTLVRKIDTNHLYVMKGS 592
G +G+V R + T L +K I + + + R I T + +K S
Sbjct: 27 GTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKS 86
Query: 593 PHNN---LYFVMDYIPGGDLMSLL--IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
P + L+ VM++ G + L+ K +E + E+ + +H IHRD
Sbjct: 87 PPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRD 146
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQE 707
IK N+L+ + +KL DFG+ Q + GR++
Sbjct: 147 IKGQNVLLTENAEVKLVDFGVSA-----------QLDRTVGRRN---------------- 179
Query: 708 CRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-----RTGYTQLCDWWSVGV 762
+ +GTP ++APEV+ Y D WS+G+
Sbjct: 180 -------------------------TFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGI 214
Query: 763 ILYEMLVGSPPF 774
EM G+PP
Sbjct: 215 TAIEMAEGAPPL 226
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 55.1 bits (133), Expect = 5e-08
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFG 667
AV HK IHRD+KP+NILI + G IKL DFG
Sbjct: 112 AVNFCHKHNCIHRDVKPENILITKQGQIKLCDFG 145
Score = 30.8 bits (70), Expect = 3.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 735 VGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSP 772
V T Y APE+L+ T Y D W++G + E+L G P
Sbjct: 161 VATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQP 199
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 55.0 bits (132), Expect = 6e-08
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 53/158 (33%)
Query: 625 RFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSN 684
+ ++ +L + HK +HRD+KP N+LI+ G +KL DFGL
Sbjct: 106 KIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGL---------------- 149
Query: 685 GDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPE 744
R S+ P++ +S V T Y P+
Sbjct: 150 ---ARAKSV-PTKTYSNE--------------------------------VVTLWYRPPD 173
Query: 745 VLL-RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAE 781
VLL T Y+ D W VG ILYEM G P F +T E
Sbjct: 174 VLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKE 211
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 54.3 bits (130), Expect = 7e-08
Identities = 55/252 (21%), Positives = 94/252 (37%), Gaps = 72/252 (28%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKT----------IYKCVGAFGEVTLVRKIDTNHLYVMKGS 592
G +G+V R + T L +K I + + + + R I T + +K +
Sbjct: 17 GTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKN 76
Query: 593 P---HNNLYFVMDYIPGGDLMSLL--IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRD 647
P + L+ VM++ G + L+ K +E + E+ + +H+ IHRD
Sbjct: 77 PPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRD 136
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQE 707
IK N+L+ + +KL DFG+ Q + GR++
Sbjct: 137 IKGQNVLLTENAEVKLVDFGVSA-----------QLDRTVGRRN---------------- 169
Query: 708 CRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-----RTGYTQLCDWWSVGV 762
+ +GTP ++APEV+ Y D WS+G+
Sbjct: 170 -------------------------TFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGI 204
Query: 763 ILYEMLVGSPPF 774
EM G+PP
Sbjct: 205 TAIEMAEGAPPL 216
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 54.0 bits (130), Expect = 1e-07
Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 52/208 (25%)
Query: 634 AVESVH-KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDS 692
A+E +H K+ IHRD+KP N+LI+R+G +KL DFG+ S Y DS
Sbjct: 115 ALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGI---------SGYL--------VDS 157
Query: 693 MEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYT 752
+ T C+ P ER I PE L + GY
Sbjct: 158 VAK-------TIDAGCK----PYMAPER--------------------INPE-LNQKGYD 185
Query: 753 QLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQL 812
D WS+G+ + E+ G P+ + + Q K + E +PAE + SPE D + +
Sbjct: 186 VKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPAE-KFSPEFQDFVNK- 243
Query: 813 CTGADKRLGKNASEVKAHPFFSNVDFEK 840
C + + N E+ HPFF +
Sbjct: 244 CLKKNYKERPNYPELLQHPFFELHLSKN 271
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 53.9 bits (130), Expect = 2e-07
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 592 SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLA----RFYIAELTCAVESVHKMGFIHRD 647
N LY + + DL + I+ G +PL + +I ++ C ++ +H +HRD
Sbjct: 76 GNFNELYLYEELMEA-DLHQI-IRSG---QPLTDAHFQSFIYQILCGLKYIHSANVLHRD 130
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGF 672
+KP N+L++ D +K+ DFGL GF
Sbjct: 131 LKPGNLLVNADCELKICDFGLARGF 155
Score = 41.2 bits (97), Expect = 0.002
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 735 VGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGSPPF 774
V T Y APE++L YT+ D WSVG IL E+L P F
Sbjct: 170 VATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVF 210
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 52.8 bits (127), Expect = 3e-07
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 542 VGVFGEV---TLVRKIDTNHLYVMKTIYKCVGA------FGEVTLVRKIDTNHLYVMKGS 592
G FG+V + + +KT C E ++R+ D H+ + G
Sbjct: 16 EGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGV 75
Query: 593 PHNN-LYFVMDYIPGGDLMSLLIKKGIFEEPLARF--YIAELTCAVESVHKMGFIHRDIK 649
N ++ VM+ P G+L S L + + LA Y +L+ A+ + F+HRDI
Sbjct: 76 ITENPVWIVMELAPLGELRSYL-QVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIA 134
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQS 683
N+L+ +KL DFGL R+ + YY++
Sbjct: 135 ARNVLVSSPDCVKLGDFGLS---RYLEDESYYKA 165
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 54.4 bits (131), Expect = 3e-07
Identities = 40/194 (20%), Positives = 61/194 (31%), Gaps = 25/194 (12%)
Query: 144 GEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPI-PPTRPAPL 202
E P P PA P + AS + S P+S S + SPSP P + PAP
Sbjct: 251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPS 310
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
+S + + S ++ + S A++P PS S S P P P
Sbjct: 311 SPRASSSSSSSRES--SSSSTSSSSESSRGAAVSPGPSPSRSPS-------PSRPPPPAD 361
Query: 263 TEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQR-KFSPGDSRSESPASASS 321
P P ++ + P +R + + A+
Sbjct: 362 PSSPRKRPR--------------PSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
Query: 322 TESRTPPLPPTTSS 335
R P P +
Sbjct: 408 PAGRPRPSPLDAGA 421
Score = 51.7 bits (124), Expect = 2e-06
Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 5/196 (2%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQS-PTQSPSSGIYSGPGSTGSPSPIPPTRPAP 201
P + P PAAA P PP S+ I + S P +P G++ S S +
Sbjct: 189 PPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGC- 247
Query: 202 LQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP-V 260
W P ++ + + + P S SSS +++ P P SP
Sbjct: 248 --GWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
Query: 261 PTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASAS 320
AS+ + + ++ + S ++ P R SP + S+
Sbjct: 306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSP 365
Query: 321 STESRTPPLPPTTSSS 336
R P + ++S
Sbjct: 366 RKRPRPSRAPSSPAAS 381
Score = 46.3 bits (110), Expect = 7e-05
Identities = 41/198 (20%), Positives = 59/198 (29%), Gaps = 13/198 (6%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPT-QSPSSGIYSGPGSTGSPSPIPPT--------RP 199
P P P P S S S + SP+ P SP P PPT P
Sbjct: 71 PPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSP 130
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP 259
AP + R + S + ++ + A + + S ++ + PS
Sbjct: 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETA--RAPSS 188
Query: 260 VPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDS-RSESPAS 318
P PPS A + I S ++ S DS SES
Sbjct: 189 PPAEPPPSTPPA-AASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGC 247
Query: 319 ASSTESRTPPLPPTTSSS 336
E+ P P +
Sbjct: 248 GWGPENECPLPRPAPITL 265
Score = 45.9 bits (109), Expect = 1e-04
Identities = 47/196 (23%), Positives = 70/196 (35%), Gaps = 14/196 (7%)
Query: 148 IPYPSPAAAPPPPPSYSASIQSRQSPTQSP---SSGIYSGPGSTGSPSPIPPTRPAPLQA 204
P P A+PPP P+ S R + P +S +G S +R A L
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176
Query: 205 WSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTE 264
S + P S + P PS A A PP SS I P P+P +
Sbjct: 177 SSPEETARAPS----SPPAEPP--PSTPPAAASPRPPRRSSPISASASSPA-PAPGRSAA 229
Query: 265 PPSYASTMQALATSRVATISIPESNT----TTTTTTPAHPLLQRKFSPGDSRSESPASAS 320
+ AS+ + ++ PE+ T P ++ SR +S+S
Sbjct: 230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSS 289
Query: 321 STESRTPPLPPTTSSS 336
S R+P P++ S
Sbjct: 290 SPRERSPSPSPSSPGS 305
Score = 40.9 bits (96), Expect = 0.004
Identities = 37/210 (17%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 140 DYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRP 199
D + + P P A PP + ++ S + + + +P P
Sbjct: 133 DLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAE 192
Query: 200 APLQAWSSRQAKTQPV--VIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQP- 256
P + + P + + S+P P A + S SSS + P
Sbjct: 193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252
Query: 257 -----PSPVPTTEPPSYASTMQALATSRVATI-----SIPESNTTTTTTTPAHPLLQRKF 306
P P P T P S S E + + + ++P
Sbjct: 253 NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSP 312
Query: 307 SPGDSRSESPASASSTESRTPPLPPTTSSS 336
S S S S+SS+ S + + S
Sbjct: 313 RASSSSSSSRESSSSSTSSSSESSRGAAVS 342
Score = 40.2 bits (94), Expect = 0.006
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 15/221 (6%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P P PAA+PP + A++ S + ++ + + S + +PS P P ++
Sbjct: 144 PGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAAS 203
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQP------PSPVPT 262
+ + + S+P P A + S SSS + P P P P
Sbjct: 204 PRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPI 263
Query: 263 TEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASST 322
T P S + S+ + +P+ SPG + S ASS+
Sbjct: 264 TLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPS------SPGSGPAPSSPRASSS 317
Query: 323 ESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQSPIPER 363
S + +++SS + + G + +SP P R
Sbjct: 318 SSSSRESSSSSTSSSSESSRGAAVSPGPS---PSRSPSPSR 355
Score = 39.0 bits (91), Expect = 0.013
Identities = 28/132 (21%), Positives = 42/132 (31%), Gaps = 13/132 (9%)
Query: 152 SPAAAPPPPPS-YSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIP---PTRPAPLQAWSS 207
S A P S S+S + S + S SS G + PSP P+RP P SS
Sbjct: 305 SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSS 364
Query: 208 RQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP-------- 259
+ + +P S ++ + + A + + PSP
Sbjct: 365 PRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASG 424
Query: 260 -VPTTEPPSYAS 270
P S
Sbjct: 425 AFYARYPLLTPS 436
Score = 37.1 bits (86), Expect = 0.048
Identities = 22/130 (16%), Positives = 32/130 (24%), Gaps = 13/130 (10%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPT----QSPSSGIYSGPGSTGSPSPIPP-- 196
G A P S S T +S S G S+G P
Sbjct: 784 AGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAA 843
Query: 197 TRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQP 256
P + SS+ + +P A + P ++ P
Sbjct: 844 RPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAA-------AAAP 896
Query: 257 PSPVPTTEPP 266
P+ P P
Sbjct: 897 PAGAPAPRPR 906
Score = 32.8 bits (75), Expect = 1.1
Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 28/123 (22%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P SP+ + PPPP+ +S + R P+++PSS P ++ R A R
Sbjct: 347 PSRSPSPSRPPPPADPSSPRKRPRPSRAPSS-----PAASAGRPTRRRARAAVAGRARRR 401
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPP-----SPVPTT 263
A A P P + + P P P +
Sbjct: 402 DA------------------TGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGS 443
Query: 264 EPP 266
PP
Sbjct: 444 PPP 446
Score = 31.3 bits (71), Expect = 2.9
Identities = 31/225 (13%), Positives = 63/225 (28%), Gaps = 32/225 (14%)
Query: 144 GEKLIPYPSPAAAPPPPPSYSASIQ--SRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAP 201
GE P+ + Q S + + + + P PP P P
Sbjct: 18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPP--PGP 75
Query: 202 LQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP 261
+ ++++ P + ++ + T P+SP PP P
Sbjct: 76 GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP-------------PPPTPP 122
Query: 262 TTEPP--------SYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSP-GDSR 312
PP + + A+ ++ + A +
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182
Query: 313 SESPASASST------ESRTPPLPPTTSSSVNNKNMTNGTGGGRT 351
+ +P+S + + P PP SS ++ + GR+
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS 227
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 54.0 bits (129), Expect = 3e-07
Identities = 78/276 (28%), Positives = 108/276 (39%), Gaps = 76/276 (27%)
Query: 530 NHLYVMKTIYKCVGVFGEVTLVRKIDTNHLYVMKTI-YKCVGAFGEVTLVRKIDTNHLYV 588
N V+K I G FGEV LV+ T + K I Y+ + + LV +++ V
Sbjct: 13 NEYEVIKKIGN--GRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVN-----V 65
Query: 589 MKGSPHNN---------------LYFVMDYIPGGDLMSLLIKK-----GIFEEPLARFYI 628
M+ H N LY +M++ GDL S I+K G EE
Sbjct: 66 MRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDL-SRNIQKCYKMFGKIEEHAIVDIT 124
Query: 629 AELTCAVESVHKMG-------FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYY 681
+L A+ H + +HRD+KP NI L TG R H K
Sbjct: 125 RQLLHALAYCHNLKDGPNGERVLHRDLKPQNIF-------------LSTGIR--HIGKIT 169
Query: 682 -QSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNY 740
Q+N +GR + S+ G E +AHS VGTP Y
Sbjct: 170 AQANNLNGRPIAKIGDFGLSKNI-GIES---------------------MAHSCVGTPYY 207
Query: 741 IAPEVLLR--TGYTQLCDWWSVGVILYEMLVGSPPF 774
+PE+LL Y D W++G I+YE+ G PF
Sbjct: 208 WSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPF 243
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 52.7 bits (127), Expect = 4e-07
Identities = 41/145 (28%), Positives = 54/145 (37%), Gaps = 62/145 (42%)
Query: 639 HKMGFIHRDIKPDNILIDRDGH----IKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSME 694
H +HRD+KP NIL+ +G +K+ D GL
Sbjct: 125 HSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA------------------------- 159
Query: 695 PSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHS--LVGTPNYIAPEVLLRTG-- 750
R N+PLKPL A +V T Y APE+LL G
Sbjct: 160 --------------RLFNAPLKPL------------ADLDPVVVTIWYRAPELLL--GAR 191
Query: 751 -YTQLCDWWSVGVILYEMLVGSPPF 774
YT+ D W++G I E+L P F
Sbjct: 192 HYTKAIDIWAIGCIFAELLTLEPIF 216
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 52.6 bits (126), Expect = 4e-07
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
+ Y VM Y+ DL ++ E ++ + ++ C ++ +H G IHRD+KP N+ +
Sbjct: 94 DFYLVMPYMQT-DLQKIMGHP--LSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAV 150
Query: 656 DRDGHIKLTDFGL 668
+ D +K+ DFGL
Sbjct: 151 NEDCELKILDFGL 163
Score = 39.5 bits (92), Expect = 0.007
Identities = 38/127 (29%), Positives = 50/127 (39%), Gaps = 39/127 (30%)
Query: 740 YIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGS-----------------------PPFL 775
Y APEV+L Y Q D WSVG I+ EML G P F+
Sbjct: 180 YRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFV 239
Query: 776 ANTSAETQYKVINWESCLHIPAE------AQLSPEGADLI---LQLCTGADKRLGKNASE 826
+ I +S P + + SP+ DL+ L+L DKRL A+E
Sbjct: 240 QKLEDKAAKSYI--KSLPKYPRKDFSTLFPKASPQAVDLLEKMLEL--DVDKRL--TATE 293
Query: 827 VKAHPFF 833
HP+F
Sbjct: 294 ALEHPYF 300
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 51.9 bits (124), Expect = 5e-07
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 730 LAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINW 789
LA + GTP Y++PE L GY D WS+G ILYEM + F +++
Sbjct: 161 LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEG 220
Query: 790 ESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAHPF 832
+ P+ + + I+Q D L +A+E+ +PF
Sbjct: 221 PT----PSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPF 259
Score = 38.0 bits (88), Expect = 0.014
Identities = 51/196 (26%), Positives = 75/196 (38%), Gaps = 30/196 (15%)
Query: 543 GVFGEVTLV---RKIDTNHLYVMKTI-------YKCVGAFGEVTLVRKIDTNHLYVMKGS 592
G FG V LV + + L V+K I + V A E L+ K+D + S
Sbjct: 11 GSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHAS 70
Query: 593 --PHNNLYFVMDYIPGGDL---MSLLIKKG-IFEEPLARFYIAELTCAVESVHKMGFIHR 646
+ + +Y G DL + L G E + +L V +H+ +HR
Sbjct: 71 FLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHR 130
Query: 647 DIKPDNILIDRDGHIKLTDFG----------LCTGFRWTHNSKYYQSNGDHGRQDSMEPS 696
D+K NI + ++ +K+ DFG L T F T YY S Q S
Sbjct: 131 DLKAKNIFL-KNNLLKIGDFGVSRLLMGSCDLATTFTGT---PYYMSPEALKHQGYDSKS 186
Query: 697 EEWSQGTPGQECRCIN 712
+ WS G E C+
Sbjct: 187 DIWSLGCILYEMCCLA 202
Score = 34.1 bits (78), Expect = 0.27
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 90 MKTLRKADV--LKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGEKL 147
+K L++ V L N+ E +L++ D+ +VK + SF ++D + +Y G L
Sbjct: 30 LKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDL 89
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 51.9 bits (124), Expect = 5e-07
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 594 HNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCA--VESVHKMGFIHRDIKPD 651
HN LY VM+ + G+L++ L +G + + L A +E + +HRD+
Sbjct: 70 HNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAAR 129
Query: 652 NILIDRDGHIKLTDFGL 668
NIL+ DG K++DFGL
Sbjct: 130 NILVSEDGVAKVSDFGL 146
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 52.4 bits (125), Expect = 5e-07
Identities = 60/268 (22%), Positives = 92/268 (34%), Gaps = 81/268 (30%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIY--------KCVGAFGEVTLVRKIDTNHLYVMKGS-- 592
G FG V R + + + +K + K EV ++K+ + +G
Sbjct: 26 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYL 85
Query: 593 PHNNLYFVMDYIPGG--DLMSLLIKKGIFEEPLARFYIAELT----CAVESVHKMGFIHR 646
+ + VM+Y G DL+ + ++PL IA +T + +H IHR
Sbjct: 86 REHTAWLVMEYCLGSASDLLE------VHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHR 139
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
D+K NIL+ G +KL GD G M P
Sbjct: 140 DVKAGNILLSEPGLVKL---------------------GDFGSASIMAP----------- 167
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG---YTQLCDWWSVGVI 763
A+ VGTP ++APEV+L Y D WS+G+
Sbjct: 168 ------------------------ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 203
Query: 764 LYEMLVGSPPFLANTSAETQYKVINWES 791
E+ PP + Y + ES
Sbjct: 204 CIELAERKPPLFNMNAMSALYHIAQNES 231
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 53.5 bits (129), Expect = 5e-07
Identities = 33/186 (17%), Positives = 52/186 (27%), Gaps = 4/186 (2%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P P AA P P + +A + + + + P + P A
Sbjct: 601 PAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP 660
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
A P + + P P+ AP + P + P
Sbjct: 661 DASDGGDG--WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPA 718
Query: 263 TEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASST 322
+PP A A A S A +P PA Q P + + +PA+A
Sbjct: 719 AQPPQAAQG--ASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP 776
Query: 323 ESRTPP 328
+
Sbjct: 777 SPPSEE 782
Score = 50.0 bits (120), Expect = 6e-06
Identities = 33/190 (17%), Positives = 48/190 (25%), Gaps = 6/190 (3%)
Query: 149 PYPSPAAA---PPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAW 205
P P A P P S +R + +P++ P + PAP A
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649
Query: 206 SSRQAKTQPVV-IMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTE 264
K V P + A P +P + + QP T
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709
Query: 265 PPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFS--PGDSRSESPASASST 322
P A A S P P P + P + ++
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769
Query: 323 ESRTPPLPPT 332
+ PP P
Sbjct: 770 PAAAPPPSPP 779
Score = 47.3 bits (113), Expect = 4e-05
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 10/140 (7%)
Query: 145 EKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGI-YSGPGSTGSPSPIPPTRPAPLQ 203
E+ + A AP +A + + +P++ + + +P P PAP
Sbjct: 382 ERRLGVAGGAGAPAAAAPSAA--AAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAP 439
Query: 204 AWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTT 263
A P P+ + P P+ + P +P P
Sbjct: 440 A-------PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492
Query: 264 EPPSYASTMQALATSRVATI 283
P + A+ AT+
Sbjct: 493 APAAPAAPAAPAGADDAATL 512
Score = 34.6 bits (80), Expect = 0.33
Identities = 28/178 (15%), Positives = 43/178 (24%), Gaps = 40/178 (22%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
AAA P P + P +P+ P P A S
Sbjct: 414 AAAPAAAAAPAPA-------AAPQPAPAPAP---------APAPPSPAGNAPAGGAPSPP 457
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
A + P + + AP P + P P+
Sbjct: 458 PAAAPS------AQPAPAPAAAPEPTAAPAPAPPAA---PAPAAAPAAPAAPAAPAGADD 508
Query: 269 AST--------MQALATSRVATISIPESNTTT-----TTTTPAH--PLLQRKFSPGDS 311
A+T + A+ T +I T T L R+F+ +
Sbjct: 509 AATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGFSTGGLARRFASPGN 566
Score = 32.7 bits (75), Expect = 1.2
Identities = 31/240 (12%), Positives = 58/240 (24%), Gaps = 53/240 (22%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSS- 207
PS AP P + + +P +P+ + + + W
Sbjct: 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEI 519
Query: 208 ------RQAKTQPVVIMQSVKSTPVQKPSLQ----------------------TAIA--- 236
R KT ++ + V+ +L TA+A
Sbjct: 520 LAAVPKRSRKTWAIL-LPEATVLGVRGDTLVLGFSTGGLARRFASPGNAEVLVTALAEEL 578
Query: 237 -------------------PTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALAT 277
P SS ++ +P P+ P+ A A A
Sbjct: 579 GGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAE 638
Query: 278 SRVATISIPESNTTTTTTTP-AHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSS 336
+ A + P + +PA+ + P P ++
Sbjct: 639 ASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698
Score = 30.3 bits (69), Expect = 5.4
Identities = 11/122 (9%), Positives = 29/122 (23%), Gaps = 4/122 (3%)
Query: 223 STPVQKPSLQTAIAPTSPPS----YSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATS 278
+ A A P+ +++ PQP P + +
Sbjct: 394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA 453
Query: 279 RVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVN 338
+ S A + A+ ++ + P ++++
Sbjct: 454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLR 513
Query: 339 NK 340
+
Sbjct: 514 ER 515
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 51.8 bits (124), Expect = 5e-07
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 53/193 (27%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTC-AVESVHKMGFIHRDIKPDNILI 655
+Y V +Y+ G L++ L + G +P + + C + + FIHRD+ N L+
Sbjct: 74 IYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLV 133
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPL 715
D G +K++DFGL R+ + +Y S G S P WS
Sbjct: 134 DDQGCVKVSDFGLS---RYVLDDEYTSSVG------SKFPV-RWS--------------- 168
Query: 716 KPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPF 774
PEVLL + ++ D W+ GV+++E+ +G P+
Sbjct: 169 --------------------------PPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPY 202
Query: 775 LANTSAETQYKVI 787
++ET KV
Sbjct: 203 ERFNNSETVEKVS 215
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 51.6 bits (123), Expect = 6e-07
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 731 AHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLAN 777
AHSLVGTP Y++PE + GY D WS+G +LYEM PF +
Sbjct: 163 AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD 209
Score = 48.5 bits (115), Expect = 6e-06
Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 546 GEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKIDTNHLYVMKGSP----HNNLYFVM 601
G ++K+ L K C+ E+ L++++ NH V+K N L V+
Sbjct: 27 GVPVALKKVQIFDLMDAKARADCIK---EIDLLKQL--NHPNVIKYYASFIEDNELNIVL 81
Query: 602 DYIPGGDLMSLL----IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDR 657
+ GDL ++ +K + E Y +L A+E +H +HRDIKP N+ I
Sbjct: 82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITA 141
Query: 658 DGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEP-----------SEEWSQGTPGQ 706
G +KL D GL F +SK ++ G M P S+ WS G
Sbjct: 142 TGVVKLGDLGLGRFF----SSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLY 197
Query: 707 ECRCINSPL 715
E + SP
Sbjct: 198 EMAALQSPF 206
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 52.2 bits (125), Expect = 7e-07
Identities = 42/215 (19%), Positives = 65/215 (30%), Gaps = 17/215 (7%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSP---IPPTRPAPL--Q 203
P P+P + P S + S Q P+Q P + S P PP++P P Q
Sbjct: 75 PAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQ 134
Query: 204 AWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTT 263
++Q + P V Q +P Q+P Q P + + S ++ P P P
Sbjct: 135 QPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPN 194
Query: 264 EPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTE 323
EP + MQ P + + P + G + S +
Sbjct: 195 EPLPSSMAMQ------------PPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQ 242
Query: 324 SRTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQS 358
P G +Y S
Sbjct: 243 QPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSS 277
Score = 47.6 bits (113), Expect = 2e-05
Identities = 39/188 (20%), Positives = 54/188 (28%), Gaps = 12/188 (6%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAP-LQAWSS 207
P AA PP P+ + +Q +Q+P S Y P + P Q
Sbjct: 65 PLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQ---LPPQQVQSVPQQPTPQQEPY 121
Query: 208 RQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPS 267
+QP Q + Q Q Y S QQ Q + PP + S
Sbjct: 122 YPPPSQP----QPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVS 177
Query: 268 --YASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRS--ESPASASSTE 323
Y S +P S + A P Q P S P ++
Sbjct: 178 GLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSG 237
Query: 324 SRTPPLPP 331
+ PP
Sbjct: 238 FPSGQQPP 245
Score = 43.0 bits (101), Expect = 5e-04
Identities = 25/131 (19%), Positives = 33/131 (25%), Gaps = 8/131 (6%)
Query: 143 PGEKLIPYPSPAA-APPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSP--SPIPPTRP 199
P ++ P Y + Q Q P + S P SP P
Sbjct: 132 PAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSY 191
Query: 200 APLQAWSSRQAKTQP---VVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQP 256
P + S A P Q P P + P P+ QQ Q
Sbjct: 192 PPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYG--GPGGRPNSGFPSGQQPPPSQG 249
Query: 257 PSPVPTTEPPS 267
+ PP
Sbjct: 250 QEGYGYSGPPP 260
Score = 36.8 bits (85), Expect = 0.046
Identities = 29/186 (15%), Positives = 44/186 (23%), Gaps = 16/186 (8%)
Query: 165 ASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKST 224
+ +Q QS + + + P+P + A + P
Sbjct: 25 SKLQLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQP 84
Query: 225 PVQKPSL---QTAIAPTSPPSYSSSIQQQQQKPQPP--------SPVPTTEPPSYASTMQ 273
Q+ S PP S+ QQ Q P P P +P +
Sbjct: 85 DQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPP 144
Query: 274 ALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPA---SASSTESRTPPLP 330
+ S P+ P G ESP S E +
Sbjct: 145 PQVPQQQQYQSPPQQPQYQQNPPPQAQ--SAPQVSGLYPEESPYQPQSYPPNEPLPSSMA 202
Query: 331 PTTSSS 336
S
Sbjct: 203 MQPPYS 208
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 51.6 bits (123), Expect = 7e-07
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGA-FG----EVTLVRKIDTNHLYVMKGS--PHN 595
G +G+V R + T L +K I G F E+ +V++ ++ GS
Sbjct: 20 GTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSRE 79
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
L+ M+Y GG L + G E + E + +H G +HRDIK NIL+
Sbjct: 80 KLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILL 139
Query: 656 DRDGHIKLTDFGL 668
+G +KL DFG+
Sbjct: 140 TDNGDVKLADFGV 152
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 51.7 bits (124), Expect = 7e-07
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 57/201 (28%)
Query: 595 NNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNI 653
NL VM+Y+P G L L K + + Y +++ +E + ++HRD+ NI
Sbjct: 80 RNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNI 139
Query: 654 LIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINS 713
L++ + +K+ DFGL + +YY+ EP E S
Sbjct: 140 LVESENRVKIGDFGLTKVL--PQDKEYYKVR---------EPGE---------------S 173
Query: 714 PLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV---- 769
P+ + APE L + ++ D WS GV+LYE+
Sbjct: 174 PI-----------------------FWYAPESLTESKFSVASDVWSFGVVLYELFTYSDK 210
Query: 770 -GSPP--FLANTSAETQYKVI 787
SPP F+ + Q ++I
Sbjct: 211 SCSPPAEFMRMMGNDKQGQMI 231
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 51.0 bits (122), Expect = 1e-06
Identities = 55/219 (25%), Positives = 81/219 (36%), Gaps = 72/219 (32%)
Query: 598 YFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESV-------HKMGFIHRDIKP 650
Y +M+ + GGDL+S L + + EL V +M FIHRD+
Sbjct: 75 YIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAA 134
Query: 651 DNILI-----DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPG 705
N L+ D D +K+ DFGL R + S YY+ G +G
Sbjct: 135 RNCLVSEKGYDADRVVKIGDFGLA---RDIYKSDYYRKEG---------------EG--- 173
Query: 706 QECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILY 765
L P+ ++APE LL +T D WS GV+++
Sbjct: 174 ---------LLPVR--------------------WMAPESLLDGKFTTQSDVWSFGVLMW 204
Query: 766 EML-VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSP 803
E+L +G P+ A N E H+ A +L
Sbjct: 205 EILTLGQQPYPALN---------NQEVLQHVTAGGRLQK 234
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 51.0 bits (122), Expect = 1e-06
Identities = 56/242 (23%), Positives = 87/242 (35%), Gaps = 57/242 (23%)
Query: 597 LYFVMDYIPGGDLMSL----LIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
+Y M+Y+ G L L + +GI E+ L R A + + IHRD+KP N
Sbjct: 74 VYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTN 133
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+L++ +G +KL DFG+ + N + + G Q M P E G P Q
Sbjct: 134 VLVNGNGQVKLCDFGV------SGNLVASLAKTNIGCQSYMAP-ERIKSGGPNQ------ 180
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSP 772
T YT D WS+G+ + EM +G
Sbjct: 181 ----------------------NPT-------------YTVQSDVWSLGLSILEMALGRY 205
Query: 773 PFLANTSAE--TQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEVKAH 830
P+ T A Q I +P+ S + D + C +++ H
Sbjct: 206 PYPPETYANIFAQLSAIVDGDPPTLPSG--YSDDAQDFV-AKCLNKIPNRRPTYAQLLEH 262
Query: 831 PF 832
P+
Sbjct: 263 PW 264
Score = 29.0 bits (65), Expect = 9.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 84 TNHLYAMKTLR-KADVLKRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYI 142
T AMK +R + D K NQ+ E DIL +A + ++V Y +F + +Y M+Y+
Sbjct: 25 TGVTMAMKEIRLELDESKFNQII---MELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM 81
Query: 143 PGEKL 147
L
Sbjct: 82 DAGSL 86
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 51.0 bits (122), Expect = 1e-06
Identities = 58/247 (23%), Positives = 87/247 (35%), Gaps = 73/247 (29%)
Query: 543 GVFGEVTLVRKIDTNHLYVMK--------TIYKCVGAFGEVTLVRKIDTNHLYVMKGS-- 592
G FG V R + TN + +K + K EV ++++ + KG
Sbjct: 26 GSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYL 85
Query: 593 PHNNLYFVMDYIPG--GDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
+ + VM+Y G D++ + KK + E +A L + +H IHRDIK
Sbjct: 86 REHTAWLVMEYCLGSASDILEVH-KKPLQEVEIAAICHGALQ-GLAYLHSHERIHRDIKA 143
Query: 651 DNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRC 710
NIL+ G +KL D G + P
Sbjct: 144 GNILLTEPGTVKL---------------------ADFGSASLVSP--------------- 167
Query: 711 INSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG---YTQLCDWWSVGVILYEM 767
A+S VGTP ++APEV+L Y D WS+G+ E+
Sbjct: 168 --------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 207
Query: 768 LVGSPPF 774
PP
Sbjct: 208 AERKPPL 214
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 51.8 bits (124), Expect = 1e-06
Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 10/181 (5%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P+ A A A+ +R+SP + +P P PA A ++R
Sbjct: 404 AAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAAR 463
Query: 209 QAKTQPV-VIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPS 267
A P V + + P+ A A PP + ++ P+ SP P +
Sbjct: 464 PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPW------EELPPEFASPAPAQPDAA 517
Query: 268 YASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTP 327
A + + AT ++ T A P + + + P AS S P
Sbjct: 518 PAGWVAE-SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRAS--ASGLP 574
Query: 328 P 328
Sbjct: 575 D 575
Score = 38.3 bits (89), Expect = 0.018
Identities = 28/189 (14%), Positives = 59/189 (31%), Gaps = 5/189 (2%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
P + P + +A+ ++ +P + + P + + P A +A ++ A
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424
Query: 211 KTQPV-VIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYA 269
+ P + + + + P A AP + + P PV + A
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAA---PAAAARPAAAGPRPVAAAAAAAPA 481
Query: 270 STMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSES-PASASSTESRTPP 328
A A + P +PA + + S PA+A ++
Sbjct: 482 RAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541
Query: 329 LPPTTSSSV 337
P ++
Sbjct: 542 APAPAAAPA 550
Score = 37.9 bits (88), Expect = 0.025
Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 21/220 (9%)
Query: 137 FVMDYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP 196
F M + P S A P + +A + +P++ + +P+ P
Sbjct: 353 FTMTLLRMLAFRPGQSGGGAGPATAA-AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPA 411
Query: 197 T--------------RPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIA---PTS 239
PAP ++RQA + + P P+ A P
Sbjct: 412 AAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP 471
Query: 240 PPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAH 299
+ +++ + P+P PP + + + + P + PA
Sbjct: 472 VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531
Query: 300 PLLQRKF---SPGDSRSESPASASSTESRTPPLPPTTSSS 336
F +P + + +P +A++TE P PP S+S
Sbjct: 532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 50.7 bits (121), Expect = 2e-06
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
++ Y VM ++ G DL L+ + + E+ + +F + ++ ++ +H G IHRD+KP N+
Sbjct: 93 HDFYLVMPFM-GTDLGKLMKHEKLSEDRI-QFLVYQMLKGLKYIHAAGIIHRDLKPGNLA 150
Query: 655 IDRDGHIKLTDFGL 668
++ D +K+ DFGL
Sbjct: 151 VNEDCELKILDFGL 164
Score = 43.0 bits (101), Expect = 5e-04
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 740 YIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGSPPFLAN 777
Y APEV+L YTQ D WSVG I+ EML G P F +
Sbjct: 181 YRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGH 219
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 50.6 bits (121), Expect = 2e-06
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 595 NNLYFVMDYIPGGDL---MSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
N L V +Y+ DL M +G + + + +L + H+ +HRD+KP
Sbjct: 71 NKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQ 129
Query: 652 NILIDRDGHIKLTDFGLCTGF 672
N+LI++ G +KL DFGL F
Sbjct: 130 NLLINKRGELKLADFGLARAF 150
Score = 42.9 bits (101), Expect = 4e-04
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 35/124 (28%)
Query: 740 YIAPEVLL--RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVIN--------- 788
Y AP+VLL RT Y+ D WSVG I+ EM+ G P F + + K+
Sbjct: 166 YRAPDVLLGSRT-YSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTEST 224
Query: 789 WESCLHIPA----------------EAQLSPEGADLI---LQLCTGADKRLGKNASEVKA 829
W +P P G DL+ LQL + R+ +A +
Sbjct: 225 WPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLN--PELRI--SAHDALQ 280
Query: 830 HPFF 833
HP+F
Sbjct: 281 HPWF 284
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 50.9 bits (122), Expect = 2e-06
Identities = 37/140 (26%), Positives = 51/140 (36%), Gaps = 52/140 (37%)
Query: 639 HKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEE 698
H G +HRDIKP N+L++ + +K+ DFGL R + + S+
Sbjct: 120 HSAGILHRDIKPGNLLVNSNCVLKICDFGL-------------------ARVEEPDESKH 160
Query: 699 WSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQLCDW 757
+Q V T Y APE+L+ YT D
Sbjct: 161 MTQE--------------------------------VVTQYYRAPEILMGSRHYTSAVDI 188
Query: 758 WSVGVILYEMLVGSPPFLAN 777
WSVG I E+L F A
Sbjct: 189 WSVGCIFAELLGRRILFQAQ 208
>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein. Tymoviruses
are single stranded RNA viruses. This family includes a
protein of unknown function that has been named based on
its molecular weight. Tymoviruses such as the ononis
yellow mosaic tymovirus encode only three proteins. Of
these two are overlapping this protein overlaps a larger
ORF that is thought to be the polymerase.
Length = 458
Score = 50.9 bits (122), Expect = 2e-06
Identities = 44/218 (20%), Positives = 66/218 (30%), Gaps = 38/218 (17%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGS-------PSPIPPTRP 199
L P+ + + P P S S S P S G+ P + P+ P RP
Sbjct: 246 LHPHTTRPSPPRPAFSRSPSSPLSPLPRPSTRRGLLPNPRLPRASRGHLPPPTSSAPPRP 305
Query: 200 A-----PLQAWSSRQ-------------AKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPP 241
PL SSR + Q + KS Q P+L+++ P
Sbjct: 306 NGGLRRPLHLHSSRPNSPNLRPRRIRKNSLQQTRARLGHSKSLG-QSPNLRSSQLPPPTK 364
Query: 242 SYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTT--TTTTPAH 299
+ P P P + + + S + P S + ++ H
Sbjct: 365 R---------RLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKH 415
Query: 300 PLLQRKFSPGDSRSESPASAS-STESRTPPLPPTTSSS 336
L PG S S S T P PP + +
Sbjct: 416 HRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPT 453
Score = 32.4 bits (74), Expect = 1.4
Identities = 21/119 (17%), Positives = 31/119 (26%), Gaps = 15/119 (12%)
Query: 164 SASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKS 223
S +++S Q P + P +P T APL S P
Sbjct: 351 SPNLRSSQLPPP-TKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHP--------- 400
Query: 224 TPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVAT 282
PS + S + P+ SP P+ P+ S
Sbjct: 401 -----PSALPSHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTP 454
Score = 31.6 bits (72), Expect = 2.0
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 30/120 (25%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWS 206
L+P P P P + + ++ S P P PP+ P +
Sbjct: 369 LLPVPPPKVQALPLTALAPLVRHSPSI-----------------PLPHPPSAL-PSHVGA 410
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
S + + + P L + S P+ P P SP + P
Sbjct: 411 SSSKHH-------RLPPSVLPGPRLSSPSPSPSLPTRRPGTP-----PPPASPPTPSPPS 458
Score = 31.6 bits (72), Expect = 2.3
Identities = 32/159 (20%), Positives = 50/159 (31%), Gaps = 29/159 (18%)
Query: 187 STGSPSPIPPTRPAPLQAW-SSRQAKTQPVVIMQSVK-STPVQKPSLQTAIAP------- 237
++ +P LQ S R+ +P+ + +S+ Q SL +P
Sbjct: 155 NSRPVHELPKPSTPVLQPRRSPRKQLHRPLSLPRSLHLHNSRQHSSLHPRRSPRRQLQPA 214
Query: 238 TSPPSYSSSIQQQQQKPQP---------PSPVP--TTEPPSYASTMQALATSRVATISIP 286
P + + PQP PSP+ TT P +S ++ + P
Sbjct: 215 PRRPLLAENQLHPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLSPLPRP 274
Query: 287 ESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESR 325
+ LL P SR P SS R
Sbjct: 275 ---------STRRGLLPNPRLPRASRGHLPPPTSSAPPR 304
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 50.5 bits (121), Expect = 4e-06
Identities = 42/280 (15%), Positives = 66/280 (23%), Gaps = 27/280 (9%)
Query: 128 SFQDKDNLYFVMDYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGS 187
S + N G + P Y AS P P ++
Sbjct: 72 SAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPK 131
Query: 188 TG-SPSPIPPTRP---APLQAWSSRQAKT--------QPVVIMQSVKSTPVQKPSLQTAI 235
P P ++P P Q S + P + + P P Q A
Sbjct: 132 PEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAF 191
Query: 236 APTSPPSYSSSIQQQQQ------------KPQPPSPVPTTEPPSYASTMQALATSRVATI 283
PP Q Q +P PP L + +
Sbjct: 192 PQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGL 251
Query: 284 S--IPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKN 341
S +P P Q + P + + P + PP + +
Sbjct: 252 SQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311
Query: 342 MTNGTGGGRTYKINHQSPIPERKHMTKEKED-ERRECKVK 380
G ++ S +E + +RR V
Sbjct: 312 QGQQRGPQFREQLVQLSQQQREALSQEEAKRAKRRHKIVS 351
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 49.7 bits (118), Expect = 6e-06
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFG----LCTGFRW 674
++ + +H++G +HRDIKP+N+L+ DG +K+ DFG +CTG +
Sbjct: 317 QVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINF 365
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 48.8 bits (116), Expect = 6e-06
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 35/167 (20%)
Query: 515 VGAFGEVTLVRKIDTNHLYVMKTIYKCVGVFG-------EVTLVRKIDT-NHLYVMKTIY 566
VGA+G V R + H +K++ G EV L+++++ +H +++ +
Sbjct: 10 VGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMD 69
Query: 567 KCVGAFGE----VTLV-RKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEE 621
C + + VTLV +D +L +D +P L + IK
Sbjct: 70 VCATSRTDRETKVTLVFEHVD------------QDLRTYLDKVPPPGLPAETIKD----- 112
Query: 622 PLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+ + ++ +H +HRD+KP+NIL+ G +KL DFGL
Sbjct: 113 -----LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGL 154
Score = 47.3 bits (112), Expect = 2e-05
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 26/118 (22%)
Query: 740 YIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVIN---------WE 790
Y APEVLL++ Y D WSVG I EM P F N+ A+ K+ + W
Sbjct: 173 YRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWP 232
Query: 791 SCLHIPAEA--------------QLSPEGADLILQLCT-GADKRLGKNASEVKAHPFF 833
+ +P A ++ GA L+L++ T KR+ +A HPFF
Sbjct: 233 RDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRI--SAFRALQHPFF 288
Score = 29.9 bits (67), Expect = 6.5
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 459 IGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFG-------EVTLVRKIDT-NHLYVMKT 510
IGVGA+G V R + H A+K++ G EV L+++++ +H +++
Sbjct: 8 IGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRL 67
Query: 511 IYKCVGAFGE----VTLV 524
+ C + + VTLV
Sbjct: 68 MDVCATSRTDRETKVTLV 85
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 49.5 bits (118), Expect = 6e-06
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 54/152 (35%)
Query: 622 PLARFYIA----ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHN 677
PL + +L A++ +H G IHRDIK +N+L++ I L DFG R + +
Sbjct: 256 PLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWS 315
Query: 678 SKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGT 737
+ ++ + + GT
Sbjct: 316 TPFH--------------------------------------------------YGIAGT 325
Query: 738 PNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV 769
+ APEVL YT D WS G++++E V
Sbjct: 326 VDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAV 357
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 48.9 bits (116), Expect = 7e-06
Identities = 63/268 (23%), Positives = 92/268 (34%), Gaps = 81/268 (30%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIY--------KCVGAFGEVTLVRKIDTNHLYVMKGS-- 592
G FG V R + TN + +K + K EV +++I + KG
Sbjct: 36 GSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYL 95
Query: 593 PHNNLYFVMDYIPGG--DLMSLLIKKGIFEEPLARFYIAELT----CAVESVHKMGFIHR 646
+ + VM+Y G DL+ + ++PL IA +T + +H IHR
Sbjct: 96 REHTAWLVMEYCLGSASDLLE------VHKKPLQEVEIAAITHGALQGLAYLHSHNMIHR 149
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
DIK NIL+ G +KL D G P
Sbjct: 150 DIKAGNILLTEPGQVKL---------------------ADFGSASIASP----------- 177
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG---YTQLCDWWSVGVI 763
A+S VGTP ++APEV+L Y D WS+G+
Sbjct: 178 ------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 213
Query: 764 LYEMLVGSPPFLANTSAETQYKVINWES 791
E+ PP + Y + ES
Sbjct: 214 CIELAERKPPLFNMNAMSALYHIAQNES 241
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 49.8 bits (118), Expect = 7e-06
Identities = 42/235 (17%), Positives = 75/235 (31%), Gaps = 17/235 (7%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR----PAPLQAWS 206
P A P PS + T P+SG +G S+ P PT P
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSP 502
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
+ T + K++ + T I + +S P SP T E P
Sbjct: 503 TPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESP 562
Query: 267 SYASTMQAL-ATSRVATISI-PESNTTTTTTTPAHPLLQRKFSPG---DSRSESPASASS 321
+ + + V T ++ + T ++ T P + +S S +P S+
Sbjct: 563 VNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSA 622
Query: 322 TESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKINH--------QSPIPERKHMTK 368
+ + T S + +++ + G + S P H+T+
Sbjct: 623 HPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTE 677
Score = 47.1 bits (111), Expect = 4e-05
Identities = 39/202 (19%), Positives = 68/202 (33%), Gaps = 8/202 (3%)
Query: 146 KLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAW 205
K++ + +P Y+ T P++ + + S PT P
Sbjct: 419 KVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTT 478
Query: 206 SSRQAK-TQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT-- 262
SS + T P S T TSP + +S P P T
Sbjct: 479 SSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTT 538
Query: 263 -TEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASS 321
T PP+ +++ + +V S P +NT T T A +L + G S+ +
Sbjct: 539 ATSPPTGTTSVPNATSPQVTEES-PVNNTNTPVVTSAPSVLTSAVTTG---QHGTGSSPT 594
Query: 322 TESRTPPLPPTTSSSVNNKNMT 343
++ P ++ N+ + T
Sbjct: 595 SQQPGIPSSSHSTPRSNSTSTT 616
Score = 43.6 bits (102), Expect = 4e-04
Identities = 49/224 (21%), Positives = 77/224 (34%), Gaps = 28/224 (12%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSS--GIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
SP A P + S + Q S T + +S I G +T + P T +
Sbjct: 500 TSPTPAVTTPNATSPTTQK-TSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVT 558
Query: 209 QAKTQPVVIMQSVKSTP------VQKPSLQTAIAPTS----PPSYSSSIQQQQQK---PQ 255
+ V S P V T +PTS PS S S + P
Sbjct: 559 EESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPL 618
Query: 256 PPSPVPTTEPPSYASTMQALATSRVATIS-IPESNTTTTTTTPAHPLLQRKFSPGDS--- 311
S PT T +T+ V+T+S P TT+ + P + R PG+
Sbjct: 619 LTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRY--PGEVHVT 676
Query: 312 ------RSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGGG 349
+ SP++ S ++ P + T + + T+G+
Sbjct: 677 EGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLM 720
Score = 38.6 bits (89), Expect = 0.017
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 7/133 (5%)
Query: 155 AAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQP 214
+P P P ++ + + + S PG +P A S ++
Sbjct: 646 LSPGPGPGTTSQVSGPGNSSTSRY------PGEVHVTEGMPNPNATSPSAPSGQKTAVPT 699
Query: 215 VVIMQSVKSTPVQKPSLQTAIAPTSPPS-YSSSIQQQQQKPQPPSPVPTTEPPSYASTMQ 273
V ++ ++ S T +A TSP + + P +++ +
Sbjct: 700 VTSTGGKANSTTKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTS 759
Query: 274 ALATSRVATISIP 286
T++ AT+ +P
Sbjct: 760 PPVTTKQATVPVP 772
Score = 34.0 bits (77), Expect = 0.47
Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 23/198 (11%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPT---RPAPLQAW 205
P + P SA ++ T+ S + ST SP P P T P +
Sbjct: 606 STPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSS 665
Query: 206 SSRQ-AKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTE 264
+SR + M + +T PS Q PT + + ++ T+
Sbjct: 666 TSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSP 725
Query: 265 PPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTES 324
+ + T TT P K P + + P +
Sbjct: 726 HTNEGA----------------FRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATV 769
Query: 325 RTPPLPPTTSSSVNNKNM 342
P+PPT +N +M
Sbjct: 770 ---PVPPTQHPDHSNLSM 784
Score = 33.6 bits (76), Expect = 0.56
Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 33/196 (16%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P S I S T +S + ++ P
Sbjct: 582 VTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHP----------------- 624
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP----VPTTE 264
T I + S P + T +P P +S + P V
Sbjct: 625 ---TGGENITEETPSVP-STTHVSTL-SPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGM 679
Query: 265 PPSYASTMQALATSRVATISI---PESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASS 321
P A++ A + + A ++ +TT T L+ + + A ++
Sbjct: 680 PNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLM----ASTSPHTNEGAFRTT 735
Query: 322 TESRTPPLPPTTSSSV 337
+ T LPP+TSS +
Sbjct: 736 PYNATTYLPPSTSSKL 751
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 48.4 bits (115), Expect = 9e-06
Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 57/212 (26%)
Query: 571 AFGEVTLVRKIDTNHLYVMKGSPHNN--LYFVMDYIPGGDLMSLLIKKG-IFEEPLARFY 627
A EV+L++ + ++ + H + L V +Y+ DL + G I + +
Sbjct: 51 AIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYL-DKDLKQYMDDCGNIMSMHNVKIF 109
Query: 628 IAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDH 687
+ ++ + H+ +HRD+KP N+LI+ G +KL DFGL
Sbjct: 110 LYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGL------------------- 150
Query: 688 GRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL 747
R S+ P++ +S V T Y P+VLL
Sbjct: 151 ARAKSV-PTKTYSNE--------------------------------VVTLWYRPPDVLL 177
Query: 748 RTG-YTQLCDWWSVGVILYEMLVGSPPFLANT 778
+ Y+ D W VG I +EM G P F +T
Sbjct: 178 GSSEYSTQIDMWGVGCIFFEMASGRPLFPGST 209
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 48.6 bits (116), Expect = 1e-05
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 626 FYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+ + ++ C ++ +H G IHRD+KP NI++ D +K+ DFGL
Sbjct: 122 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 164
Score = 41.6 bits (98), Expect = 0.001
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 735 VGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPF 774
V T Y APEV+L GY + D WSVG I+ EM+ G+ F
Sbjct: 178 VVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLF 217
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 48.3 bits (115), Expect = 1e-05
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 20/138 (14%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIYKCVGAFGEVTLVRKI--------DTNHLYVMKGS-- 592
G G V V T LY +K IY E T+ R+I D NH V+K
Sbjct: 85 GAGGTVYKVIHRPTGRLYALKVIY----GNHEDTVRRQICREIEILRDVNHPNVVKCHDM 140
Query: 593 -PHN-NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKP 650
HN + +++++ GG L I F +AR ++ + +H+ +HRDIKP
Sbjct: 141 FDHNGEIQVLLEFMDGGSLEGTHIADEQFLADVAR----QILSGIAYLHRRHIVHRDIKP 196
Query: 651 DNILIDRDGHIKLTDFGL 668
N+LI+ ++K+ DFG+
Sbjct: 197 SNLLINSAKNVKIADFGV 214
Score = 29.8 bits (67), Expect = 7.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 455 KIKPIGVGAFGEVTLVRKIDTNHLYAMKTIY 485
++ IG GA G V V T LYA+K IY
Sbjct: 78 RVNRIGSGAGGTVYKVIHRPTGRLYALKVIY 108
Score = 29.4 bits (66), Expect = 9.7
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 14/108 (12%)
Query: 253 KP-QPPSPVPTTEPPSYASTMQALATSRV-ATISIPESNTTTTTTTPAHPLLQRKFSPGD 310
KP QPP VP P + T ++ R T+ +P+ + + P P
Sbjct: 2 KPIQPPPGVPL--PSTARHTTKSRPRRRPDLTLPLPQRDPSLAVPLPLPP---------- 49
Query: 311 SRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQS 358
S S +S+SS+ S + P + S + N GG YK+ H+
Sbjct: 50 PSSSSSSSSSSSASGSAPSAAKSLSELERVNRIGSGAGGTVYKVIHRP 97
>gnl|CDD|214529 smart00133, S_TK_X, Extension to Ser/Thr-type protein kinases.
Length = 64
Score = 43.1 bits (102), Expect = 1e-05
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 834 SNVDFEK-GVRTLTPPHIPRIQNSMDTSNFDPVDPDK---LRNSDSMLDELSDELKSPFH 889
+D++K + + PP +P+I++ DTSNFDP ++ L DS L + PF
Sbjct: 1 RGIDWDKLENKEIEPPFVPKIKSPTDTSNFDPEFTEETPVLTPVDSPLSGGIQQE--PFR 58
Query: 890 GFF 892
GF
Sbjct: 59 GFS 61
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 48.0 bits (114), Expect = 2e-05
Identities = 30/130 (23%), Positives = 42/130 (32%), Gaps = 5/130 (3%)
Query: 141 YIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA 200
Y E L P SP+ P S S S S S P + + +P P +
Sbjct: 441 YARYEDLKPPTSPSPTAPTGVSPSVSSTS--SVPAVPDTAPATAATDAAAPPPANMRPLS 498
Query: 201 PLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPV 260
P + + T P K P + P + + Q KP+P SP
Sbjct: 499 PYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPY 558
Query: 261 PTTE---PPS 267
E PP+
Sbjct: 559 TMYEDLKPPT 568
Score = 46.5 bits (110), Expect = 6e-05
Identities = 42/241 (17%), Positives = 73/241 (30%), Gaps = 32/241 (13%)
Query: 142 IPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGP--GSTGSPSPI----- 194
IP ++ +P AA P P + ++ ++PS I P P P+
Sbjct: 323 IPSQR-VPPKESDAADGPKP-----VPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTA 376
Query: 195 -----PPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQ- 248
PPT P P SS + + + + V P + + P +
Sbjct: 377 YEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTR 436
Query: 249 --------QQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHP 300
+ + P PSP T S + V + + T PA+
Sbjct: 437 PLSPYARYEDLKPPTSPSP--TAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANM 494
Query: 301 LLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQSPI 360
R SP + S + + +S++ K + + +H P
Sbjct: 495 ---RPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPK 551
Query: 361 P 361
P
Sbjct: 552 P 552
Score = 41.8 bits (98), Expect = 0.002
Identities = 43/203 (21%), Positives = 66/203 (32%), Gaps = 16/203 (7%)
Query: 140 DYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSG-PGSTGSPSPIPPTR 198
D P IP P ++ + + + P PS G S P + TR
Sbjct: 379 DLKPPTSPIPTPPSSSPASSKSVDAVAKPA--EPDVVPSPGSASNVPEVEPAQVEAKKTR 436
Query: 199 P-APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPP 257
P +P + + T P + S V S A+ T+P + ++ P P
Sbjct: 437 PLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATD----AAAPPPA 492
Query: 258 SPVPTTEPPSYA------STMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDS 311
+ P + Y S A +VA S E + P ++ +
Sbjct: 493 NMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKP 552
Query: 312 RSESPASASSTESRTPPLPPTTS 334
R SP + E PP PT S
Sbjct: 553 RPLSPYTM--YEDLKPPTSPTPS 573
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 47.3 bits (112), Expect = 2e-05
Identities = 44/178 (24%), Positives = 62/178 (34%), Gaps = 60/178 (33%)
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFG-LCTGFRWTHNSKYYQSNGDHGRQDS 692
A++ +H+ IHRDIK +NI I+ G + L DFG C N KYY
Sbjct: 194 AIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINAN-KYYG---------- 242
Query: 693 MEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYT 752
W+ GT APE+L R Y
Sbjct: 243 ------WA-----------------------------------GTIATNAPELLARDPYG 261
Query: 753 QLCDWWSVGVILYEMLVGSPPFL------ANTSAETQYKVINWESCLHIPAEAQLSPE 804
D WS G++L+EM + ++ Q K+I S H P E + +
Sbjct: 262 PAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTH-PNEFPIDAQ 318
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 47.0 bits (111), Expect = 2e-05
Identities = 50/214 (23%), Positives = 77/214 (35%), Gaps = 66/214 (30%)
Query: 588 VMKGSPHNNLYFVMDYIPGGDLMSLLIK-------------KGIFEEPLARFYIAELTCA 634
++KG H N+ + D I + ++L+ + G + ++ +L
Sbjct: 56 LLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRG 115
Query: 635 VESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSME 694
+ +H+ +HRD+KP N+LI G +KL DFGL R S+
Sbjct: 116 LSYIHQRYILHRDLKPQNLLISDTGELKLADFGL-------------------ARAKSV- 155
Query: 695 PSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL-RTGYTQ 753
PS +S V T Y P+VLL T Y+
Sbjct: 156 PSHTYSNE--------------------------------VVTLWYRPPDVLLGSTEYST 183
Query: 754 LCDWWSVGVILYEMLVGSPPFLANTSAETQYKVI 787
D W VG I EM+ G F + Q + I
Sbjct: 184 CLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERI 217
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 46.9 bits (112), Expect = 3e-05
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 735 VGTPNYIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSPPF 774
V T Y APE++L Y Q D WSVG I+ E+L G F
Sbjct: 176 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLF 216
Score = 43.4 bits (103), Expect = 4e-04
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 598 YFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDR 657
Y V + G DL + ++K + +F + ++ ++ +H G IHRD+KP NI ++
Sbjct: 96 YLVTHLM-GADL-NNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNE 153
Query: 658 DGHIKLTDFGL 668
D +K+ DFGL
Sbjct: 154 DCELKILDFGL 164
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 47.0 bits (111), Expect = 3e-05
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
N +Y V + + G DL +++ + + +E + +F I +L ++ +H G IHRD+KP N+
Sbjct: 93 NEVYLVTNLM-GADLNNIVKCQKLSDEHV-QFLIYQLLRGLKYIHSAGIIHRDLKPSNVA 150
Query: 655 IDRDGHIKLTDFGL 668
++ D +++ DFGL
Sbjct: 151 VNEDCELRILDFGL 164
Score = 45.0 bits (106), Expect = 1e-04
Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 35/131 (26%)
Query: 735 VGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEMLVG----------------------- 770
V T Y APE++L Y Q D WSVG I+ E+L G
Sbjct: 176 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTP 235
Query: 771 SPPFLANTSAETQYKVINWESCLHIPAE------AQLSPEGADLILQ-LCTGADKRLGKN 823
SP L S+E K I +S H+P + +P DL+ + L +DKR+ +
Sbjct: 236 SPEVLKKISSEHARKYI--QSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRI--S 291
Query: 824 ASEVKAHPFFS 834
ASE AHP+FS
Sbjct: 292 ASEALAHPYFS 302
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 46.6 bits (111), Expect = 3e-05
Identities = 50/223 (22%), Positives = 83/223 (37%), Gaps = 73/223 (32%)
Query: 574 EVTLVRKIDTNH---LY--VMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEE------- 621
E +++++ + +H L V G P VM+ + GDL S L + E
Sbjct: 59 EASVMKEFNCHHVVRLLGVVSTGQP---TLVVMELMAKGDLKSYLRSRRPEAENNPGLGP 115
Query: 622 -PLARFY--IAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNS 678
L +F AE+ + + F+HRD+ N ++ D +K+ DFG+ R + +
Sbjct: 116 PTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMT---RDIYET 172
Query: 679 KYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTP 738
YY R+ + L P
Sbjct: 173 DYY-----------------------------------------RKGGKGLL-------P 184
Query: 739 -NYIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPF--LAN 777
++APE L +T D WS GV+L+EM + P+ L+N
Sbjct: 185 VRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSN 227
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 47.0 bits (111), Expect = 3e-05
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 626 FYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+ + ++ C ++ +H G IHRD+KP NI++ D +K+ DFGL
Sbjct: 123 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL 165
Score = 35.4 bits (81), Expect = 0.13
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 735 VGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 768
V T Y APEV+L GY + D WSVG I+ EM+
Sbjct: 179 VVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 212
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 46.2 bits (110), Expect = 3e-05
Identities = 49/220 (22%), Positives = 77/220 (35%), Gaps = 59/220 (26%)
Query: 574 EVTLVRKIDTNH---LY-VMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARF--Y 627
E ++ +D + LY V+ P L V + P G L+ L K + ++ Y
Sbjct: 46 EAAIMHSLDHENLIRLYGVVLTHP---LMMVTELAPLGSLLDRLRKDALGHFLISTLCDY 102
Query: 628 IAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDH 687
++ + + FIHRD+ NIL+ D +K+ DFGL + N DH
Sbjct: 103 AVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGL---------MRALPQNEDH 153
Query: 688 GRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLL 747
ME + P C APE L
Sbjct: 154 YV---MEEHLK----VPFAWC---------------------------------APESLR 173
Query: 748 RTGYTQLCDWWSVGVILYEMLV-GSPPFLANTSAETQYKV 786
++ D W GV L+EM G P+ + ++ K+
Sbjct: 174 TRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKI 213
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 46.1 bits (109), Expect = 4e-05
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 59/190 (31%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEP-------LARFYIAELTCAVESVHKMGFIHRDIKPDN 652
++ ++ GDL + L+ I EEP L RF I ++ +E + FIHRD+ N
Sbjct: 85 ILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMI-DIASGMEYLSSKNFIHRDLAARN 143
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+++ + + + DFGL + K Y +GD+ RQ
Sbjct: 144 CMLNENMTVCVADFGL--------SKKIY--SGDYYRQGCAS-----------------K 176
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE-MLVGS 771
P+K ++A E L YT D W+ GV ++E M G
Sbjct: 177 LPVK-----------------------WLALESLADNVYTTHSDVWAFGVTMWEIMTRGQ 213
Query: 772 PPFLANTSAE 781
P+ ++E
Sbjct: 214 TPYAGVENSE 223
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 46.5 bits (111), Expect = 4e-05
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 735 VGTPNYIAPEVLLRT-GYTQLCDWWSVGVILYEMLVGSPPF 774
V T Y APE++L + GYT+ D WSVG IL EML P F
Sbjct: 170 VATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLF 210
Score = 41.1 bits (97), Expect = 0.002
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
++ +H +HRD+KP N+L++ + +K+ DFGL
Sbjct: 118 GLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGL 152
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 44.3 bits (105), Expect = 5e-05
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 598 YFVMDYIPGGDLMSLLI--KKGIFEEPLARFYIAELTCAVESVHKM---GFIHRDIKPDN 652
Y +M++I G L + K+ I E+ LA +A+L H++ H D+ P N
Sbjct: 69 YLLMEWIEGETLDEVSEEEKEDIAEQ-LAE-LLAKL-------HQLPLLVLCHGDLHPGN 119
Query: 653 ILIDRDGHIKLTDFGLC 669
IL+D + + D+
Sbjct: 120 ILVDDGKILGIIDWEYA 136
Score = 35.1 bits (81), Expect = 0.065
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 83 DTNHLYAMKTLRKADVLKRN----QVAHVKAERDILA--EADNEWVVKLYYSFQDKDNLY 136
TN +Y + T + VLK N + A + E IL V K+ S + Y
Sbjct: 10 LTNRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSY 69
Query: 137 FVMDYIPGEKLIPYP 151
+M++I GE L
Sbjct: 70 LLMEWIEGETLDEVS 84
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 46.2 bits (109), Expect = 5e-05
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
N++Y V ++ G DL ++ +K + +F I ++ ++ +H IHRD+KP N+
Sbjct: 95 NDVYLVT-HLMGADLNNI-VKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA 152
Query: 655 IDRDGHIKLTDFGL 668
++ D +K+ DFGL
Sbjct: 153 VNEDCELKILDFGL 166
Score = 37.7 bits (87), Expect = 0.022
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 31/129 (24%)
Query: 735 VGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGSPPF---------------LANT 778
V T Y APE++L Y Q D WSVG I+ E+L G F +
Sbjct: 178 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 237
Query: 779 SAETQYKVINWESCLHIPAEAQL------------SPEGADLILQ-LCTGADKRLGKNAS 825
AE K+ + + +I + Q+ +P DL+ + L +DKR+ A+
Sbjct: 238 GAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRI--TAA 295
Query: 826 EVKAHPFFS 834
+ AH +F+
Sbjct: 296 QALAHAYFA 304
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 45.8 bits (108), Expect = 6e-05
Identities = 60/268 (22%), Positives = 90/268 (33%), Gaps = 81/268 (30%)
Query: 543 GVFGEVTLVRKIDTNHLYVMKTIY--------KCVGAFGEVTLVRKIDTNHLYVMKGS-- 592
G FG V TN + +K + K EV ++++ + KG
Sbjct: 32 GSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYL 91
Query: 593 PHNNLYFVMDYIPGG--DLMSLLIKKGIFEEPLARFYIAELT----CAVESVHKMGFIHR 646
+ + VM+Y G DL+ + ++PL IA +T + +H IHR
Sbjct: 92 KEHTAWLVMEYCLGSASDLLE------VHKKPLQEVEIAAITHGALQGLAYLHSHNMIHR 145
Query: 647 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQ 706
DIK NIL+ G +KL D G P
Sbjct: 146 DIKAGNILLTEPGQVKL---------------------ADFGSASKSSP----------- 173
Query: 707 ECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTG---YTQLCDWWSVGVI 763
A+S VGTP ++APEV+L Y D WS+G+
Sbjct: 174 ------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 209
Query: 764 LYEMLVGSPPFLANTSAETQYKVINWES 791
E+ PP + Y + +S
Sbjct: 210 CIELAERKPPLFNMNAMSALYHIAQNDS 237
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 45.4 bits (108), Expect = 7e-05
Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 60/218 (27%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCA---VESVHKMGFIHRDIKPDNILID 656
VM+ P G L+ L K+ + ++ +ES H F+HRD+ N+L+
Sbjct: 73 VMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKH---FVHRDLAARNVLLV 129
Query: 657 RDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLK 716
K++DFG+ S YY++ GR W PLK
Sbjct: 130 NRHQAKISDFGMSRALG--AGSDYYRAT-TAGR---------W--------------PLK 163
Query: 717 PLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPFL 775
+ APE + ++ D WS GV L+E G+ P+
Sbjct: 164 -----------------------WYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYG 200
Query: 776 ANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLC 813
AE + ES +P + E I+ C
Sbjct: 201 EMKGAEVIAML---ESGERLPRPEECPQEIYS-IMLSC 234
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 46.6 bits (110), Expect = 7e-05
Identities = 40/206 (19%), Positives = 61/206 (29%), Gaps = 35/206 (16%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPT---------QSPSSGIYSGPGSTGSPSP 193
P ++ P + A + PPP + ++ + SP Q + S P P
Sbjct: 179 PSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLP 238
Query: 194 IPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQK 253
P PLQ ++ Q QP + P P ++QQ
Sbjct: 239 SP---HPPLQPQTASQQSPQPPAPSSRHPQSSHHGPG----------PPMPHALQQGPVF 285
Query: 254 PQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRS 313
Q PS P P + + + + + P S TP P
Sbjct: 286 LQHPSSNP---PQPFGLAQSQVPPLPLPSQAQPHS------HTPPSQSAL---QPQQPPR 333
Query: 314 ESPASASSTESRTPPLPPTTSSSVNN 339
E P + + P PPTT
Sbjct: 334 EQPLPPAPSMPHIKP-PPTTPIPQLP 358
Score = 43.1 bits (101), Expect = 7e-04
Identities = 46/196 (23%), Positives = 61/196 (31%), Gaps = 12/196 (6%)
Query: 152 SPAAAPPPPPSYSASIQSRQSPTQSPSSG--IYSGPGSTGSPS-PIPPTRPAPLQAWSSR 208
S + P P + S S S Q P I PG+ +PS P P + S
Sbjct: 150 SSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSP 209
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
A Q + + PSL P SP QQ PQPP+P S+
Sbjct: 210 IAAQPAPQPQQPSPLSLISAPSLHPQRLP-SPHPPLQPQTASQQSPQPPAPSSRHPQSSH 268
Query: 269 ASTM----QALATSRVA----TISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASAS 320
AL V + + P+ + P PL + + A
Sbjct: 269 HGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQP 328
Query: 321 STESRTPPLPPTTSSS 336
R PLPP S
Sbjct: 329 QQPPREQPLPPAPSMP 344
Score = 42.0 bits (98), Expect = 0.002
Identities = 44/189 (23%), Positives = 60/189 (31%), Gaps = 30/189 (15%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR--PAPLQAWS 206
P+P + PPPP+ PT P S + PP + P S
Sbjct: 373 PFPQMPSNLPPPPALKPL---SSLPTHHPPS------------AHPPPLQLMPQSQPLQS 417
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
QP V+ QS Q + + P S Q P +P PP
Sbjct: 418 V---PAQPPVLTQS------QSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPP 468
Query: 267 SYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRT 326
T A R ++ S P + ++ A P P + E A ES
Sbjct: 469 PSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGP--GPPLPPIQIKEEPLDEAEEPES-- 524
Query: 327 PPLPPTTSS 335
PP PP + S
Sbjct: 525 PPPPPRSPS 533
Score = 40.8 bits (95), Expect = 0.003
Identities = 50/226 (22%), Positives = 70/226 (30%), Gaps = 27/226 (11%)
Query: 149 PYPSPAAAPPP--------PPSYSASIQSRQSPTQSPSSGI--YSGPGSTGSPSPIPPTR 198
P P P PP QS+ P PS P S + P P R
Sbjct: 274 PMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPR 333
Query: 199 PAPL-QAWSSRQAKTQPVVIM-----QSVKSTP-VQKPSLQTAIAPTSPPSYS----SSI 247
PL A S K P + QS K P +Q PS + PP + SS+
Sbjct: 334 EQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSL 393
Query: 248 QQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAH-----PLL 302
P P+ ++ A + S+P +T + P
Sbjct: 394 PTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFA 453
Query: 303 QRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGG 348
Q F+ G + P + T S P +S S + +GG
Sbjct: 454 QHPFTSGGLPAIGPPPSLPT-STPAAPPRASSGSQPPGSALPSSGG 498
Score = 39.7 bits (92), Expect = 0.009
Identities = 34/143 (23%), Positives = 48/143 (33%), Gaps = 15/143 (10%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQ-SPSSGIYSGPGSTGSPS-PIPPTRPA 200
P +L+P P + P P QS P SG++SGP + P
Sbjct: 404 PPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLP 463
Query: 201 PLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQT-AIAPTSPPSYSSSIQQQQ-------Q 252
+ S T S S P + A PP I+++ +
Sbjct: 464 AIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPE 523
Query: 253 KPQPPSPVPTTEP-----PSYAS 270
P PP P+ EP PS+AS
Sbjct: 524 SPPPPPRSPSPEPTVVNTPSHAS 546
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 45.5 bits (108), Expect = 8e-05
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 10/124 (8%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP-TRPAPLQAWSS 207
P P PPP + A Q +P+ S + + +P +Q
Sbjct: 61 QLPQPLPQPPPTQALQALPAGDQQQHNTPTG---SPAANPPATFALPAGPAGPTIQTEPG 117
Query: 208 RQAKTQ--PVVIMQSVKS---TPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
+ Q +V S P Q+ +LQ P+ S + QQQ Q
Sbjct: 118 QLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPA-SGQLPSQQQSAQKNDESQL 176
Query: 263 TEPP 266
+ P
Sbjct: 177 QQQP 180
Score = 34.7 bits (80), Expect = 0.22
Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 5/179 (2%)
Query: 148 IPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSS 207
PA + + S + T + +G T P P + +
Sbjct: 74 ALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPA 133
Query: 208 RQAKTQPVVIMQSVKSTPVQKPSLQTA--IAPTSPPSYSSSIQQQQQKPQPPSPVPTTEP 265
QP Q +Q+ A P+ S + + Q Q+ P
Sbjct: 134 NSPLDQPA---QQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTD 190
Query: 266 PSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTES 324
+ +AL R A ++ + L Q K S+ + A +S
Sbjct: 191 GAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVLKQPKKQAKSSKRRTIAQIDGIDS 249
Score = 30.5 bits (69), Expect = 4.2
Identities = 21/158 (13%), Positives = 35/158 (22%), Gaps = 14/158 (8%)
Query: 191 PSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQ 250
PSP P A L + TQ + + + P+ A P + + +
Sbjct: 51 PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGP 110
Query: 251 QQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGD 310
+ +P P P T +
Sbjct: 111 TIQTEPGQLYPVQVPVM--VTQNPANSPLDQPAQQRALQQLQQRYGAPA---------SG 159
Query: 311 SRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGG 348
SA + P + T+G G
Sbjct: 160 QLPSQQQSAQKNDESQLQQQPNGETPPQQ---TDGAGD 194
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 45.2 bits (107), Expect = 8e-05
Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 59/183 (32%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEP-------LARFYIAELTCAVESVHKMGFIHRDIKPDN 652
++ ++ GDL S L+ + P L +F + ++ +E + FIHRD+ N
Sbjct: 85 ILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKF-MVDIALGMEYLSNRNFIHRDLAARN 143
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
++ D + + DFGL + K Y +GD+ RQ R
Sbjct: 144 CMLREDMTVCVADFGL--------SKKIY--SGDYYRQG-----------------RIAK 176
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GS 771
P+K +IA E L YT D W+ GV ++E+ G
Sbjct: 177 MPVK-----------------------WIAIESLADRVYTSKSDVWAFGVTMWEIATRGQ 213
Query: 772 PPF 774
P+
Sbjct: 214 TPY 216
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 44.7 bits (106), Expect = 1e-04
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 53/191 (27%)
Query: 594 HNNLYFVMDYIPGGDLMSLL-IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
++ V +Y+ G L++ L +KG +++ A+E + GFIHRD+ N
Sbjct: 71 QRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARN 130
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
L+ D +K++DFGL R+ + +Y SQGT
Sbjct: 131 CLVGEDNVVKVSDFGLA---RYVLDDQYTS-----------------SQGT--------K 162
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GS 771
P+K + PEV + ++ D WS GV+++E+ G
Sbjct: 163 FPVK-----------------------WAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGK 199
Query: 772 PPFLANTSAET 782
P+ +++E
Sbjct: 200 MPYERFSNSEV 210
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 44.5 bits (105), Expect = 1e-04
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 52/176 (29%)
Query: 595 NNLYFVMDYIPGGDLMSLLI--KKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
N + +M+++P G L L K I + + Y ++ ++ + ++HRD+ N
Sbjct: 81 NGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLK-YAVQICKGMDYLGSRQYVHRDLAARN 139
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+L++ + +K+ DFGL + +YY D ++
Sbjct: 140 VLVESEHQVKIGDFGLTKAIE--TDKEYYTVKDD------------------------LD 173
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 768
SP+ + APE L+++ + D WS GV LYE+L
Sbjct: 174 SPV-----------------------FWYAPECLIQSKFYIASDVWSFGVTLYELL 206
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 44.7 bits (106), Expect = 1e-04
Identities = 49/194 (25%), Positives = 68/194 (35%), Gaps = 68/194 (35%)
Query: 597 LYFVMDYIPGGDLMSLL---------IKKGIFEEPLARFYIAELT-CAVESVHKMGF--- 643
LY V++Y G+L L P +L A + M F
Sbjct: 91 LYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS 150
Query: 644 ---IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWS 700
IHRD+ N+L+ D +K+ DFGL R H+ YY+ + GR
Sbjct: 151 KKCIHRDLAARNVLVTEDHVMKIADFGLA---RDIHHIDYYRKTTN-GRL---------- 196
Query: 701 QGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV 760
P+K ++APE L YT D WS
Sbjct: 197 -------------PVK-----------------------WMAPEALFDRVYTHQSDVWSF 220
Query: 761 GVILYEM--LVGSP 772
GV+L+E+ L GSP
Sbjct: 221 GVLLWEIFTLGGSP 234
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 44.3 bits (105), Expect = 1e-04
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 594 HNNLYFVMDYIPGGDLMSLLIKKG---IFEEPLARF--YIAELTCAVESVHKMGFIHRDI 648
N LY V +Y+ G L+ L +G I F + E +E + F+HRD+
Sbjct: 72 GNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKN---FVHRDL 128
Query: 649 KPDNILIDRDGHIKLTDFGL 668
N+L+ D K++DFGL
Sbjct: 129 AARNVLVSEDLVAKVSDFGL 148
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 45.1 bits (107), Expect = 2e-04
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 17/136 (12%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P + + A AP P+ +AS + P +P + + +P+ P PA +
Sbjct: 389 PAAAPVAQAAAAPAPAAAPAAAASAPA-APPAAAPPAP--VAAPAAAAPAAAPAAAPAAV 445
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
+ A+ P + V+ P +P++ +A + P PT
Sbjct: 446 ALAPAPPAQAAPETVAIPVRVAP--EPAVASAAPAPAAA------------PAAARLTPT 491
Query: 263 TEPPSYASTMQALATS 278
E + +T+Q LA +
Sbjct: 492 EEGDVWHATVQQLAAA 507
Score = 36.2 bits (84), Expect = 0.087
Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 23/149 (15%)
Query: 183 SGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPS 242
+ + P RP + P P Q A AP +
Sbjct: 368 AAAEAAAPAEKKTPARPEA---------------------AAPAAAPVAQAAAAPAPAAA 406
Query: 243 YSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLL 302
+++ P P P P + A A + A +++ + +
Sbjct: 407 PAAAASAPAAPPAAAPPAPVAAPAAAAPA--AAPAAAPAAVALAPAPPAQAAPETVAIPV 464
Query: 303 QRKFSPGDSRSESPASASSTESRTPPLPP 331
+ P + + +A+ +R P
Sbjct: 465 RVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Score = 35.1 bits (81), Expect = 0.19
Identities = 21/156 (13%), Positives = 41/156 (26%), Gaps = 19/156 (12%)
Query: 146 KLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAW 205
+L+ + AAA P+ + +P+ P + A A
Sbjct: 360 RLLAFKPAAAAEAAAPAEKKT----------------PARPEAAAPAAAPVAQAAAAPAP 403
Query: 206 SSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEP 265
++ A + P + A +P + +++ P +P P
Sbjct: 404 AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463
Query: 266 PSYASTMQALATSRVATISIPESNTTTTTTTPAHPL 301
A A + A T T +
Sbjct: 464 VRVAP---EPAVASAAPAPAAAPAAARLTPTEEGDV 496
Score = 33.9 bits (78), Expect = 0.39
Identities = 18/116 (15%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
Query: 220 SVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSR 279
+ K TP + + A AP + + + PP+ A A +
Sbjct: 376 AEKKTPARPEAAAPAAAPVAQAA----AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAA 431
Query: 280 VATISIPESNTTTTTTTPAHPL-LQRKFSPGDSRSESPASASSTESRTPPLPPTTS 334
A + P + PA P + R + +S P
Sbjct: 432 AAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
Score = 31.2 bits (71), Expect = 2.6
Identities = 28/136 (20%), Positives = 42/136 (30%), Gaps = 8/136 (5%)
Query: 177 PSSGIYSGPGSTGSPSPIPPTRPAPLQA-WSSRQAKTQPVVIMQSVKSTPVQKPSLQTAI 235
P++ + + P P AP A + A P + S P P A
Sbjct: 366 PAAAAEAAAPAEKKT-PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP----AA 420
Query: 236 APTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATS-RVATISIPESNTTTTT 294
AP +P + ++ P+ V P + + +A RVA S
Sbjct: 421 APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPA 480
Query: 295 TTPAHPLLQRKFSPGD 310
PA L GD
Sbjct: 481 AAPAAARLTP-TEEGD 495
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 45.2 bits (107), Expect = 2e-04
Identities = 30/195 (15%), Positives = 53/195 (27%), Gaps = 28/195 (14%)
Query: 151 PSPAAAPPPPP--------SYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P +A++ + P + +G + + + TR
Sbjct: 367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAP 426
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPS-PVP 261
A + T + PV + A A + + QPP+
Sbjct: 427 PAAPAP-PATADRGDDAADGDAPVPAKANARASADSRCDE---------RDAQPPADSGS 476
Query: 262 TTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASS 321
+ P AS A A + S T A SR ++PA+A+
Sbjct: 477 ASAP---ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP------AAASREDAPAAAAP 527
Query: 322 TESRTPPLPPTTSSS 336
P P ++
Sbjct: 528 PAPEARPPTPAAAAP 542
Score = 38.7 bits (90), Expect = 0.014
Identities = 19/175 (10%), Positives = 40/175 (22%), Gaps = 16/175 (9%)
Query: 177 PSSGIYSGPGSTGSPSP---IPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQT 233
P+ PG +P A + V + + K +
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTG-AAGAALAPKAAAAA 418
Query: 234 AIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTT 293
A P + + + + P + A + P + + +
Sbjct: 419 AATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS 478
Query: 294 TTTPAHPLLQRK------------FSPGDSRSESPASASSTESRTPPLPPTTSSS 336
P + +PA+AS ++ PP +
Sbjct: 479 APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
Score = 38.7 bits (90), Expect = 0.018
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 8/124 (6%)
Query: 149 PYPSPAAAPPPPPSYSASIQSR--QSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWS 206
+P AAP PP + + +P + ++ S PP +
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGS----A 477
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
S A P + P A ++ ++ P P PP
Sbjct: 478 SAPASDAPPDAAF--EPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP 535
Query: 267 SYAS 270
+ A+
Sbjct: 536 TPAA 539
Score = 35.6 bits (82), Expect = 0.14
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 26/148 (17%)
Query: 152 SPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAK 211
+ AA P + +A+ ++P +P+ P +T AP+ A ++ +A
Sbjct: 405 AAGAALAPKAAAAAAATRAEAPPAAPA------PPATADRGDDAADGDAPVPAKANARAS 458
Query: 212 TQPVVIMQSVKSTPVQKPSLQTAIAPTSPP-----------SYSSSIQQQQQKPQPPS-- 258
+ P +A A +PP + S++ + P+
Sbjct: 459 ADSRC--DERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516
Query: 259 -----PVPTTEPPSYASTMQALATSRVA 281
P P A A + A
Sbjct: 517 SREDAPAAAAPPAPEARPPTPAAAAPAA 544
Score = 30.2 bits (68), Expect = 6.1
Identities = 26/195 (13%), Positives = 49/195 (25%), Gaps = 32/195 (16%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
G+ +P + A A Q + + + P + P+P P+
Sbjct: 444 DGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP-RAAAPSAA 502
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPT--SPPSYS---------------- 244
+ A+ + + P +P + +
Sbjct: 503 TPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMR 562
Query: 245 -SSIQQQQQ--KPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPL 301
SS + + +P + P A RVA + +P T
Sbjct: 563 VSSDRGARAAAAAKPAAAPAAAPKP---------AAPRVA-VQVPTPRARAATGDAPPNG 612
Query: 302 LQRKFSPGDSRSESP 316
R +SR P
Sbjct: 613 AARAEQAAESRGAPP 627
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 44.8 bits (106), Expect = 2e-04
Identities = 39/168 (23%), Positives = 59/168 (35%), Gaps = 55/168 (32%)
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSM 693
A+ +H G IHRD+K +NI +D + L DF
Sbjct: 197 ALAYLHGRGIIHRDVKTENIFLDEPENAVLGDF--------------------------- 229
Query: 694 EPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQ 753
G C+ P P +C + GT +PE+L Y
Sbjct: 230 -----------GAACKLDAHPDTP----------QC--YGWSGTLETNSPELLALDPYCA 266
Query: 754 LCDWWSVGVILYEMLVGSPPFLA--NTSAETQYKVINWESCLHI-PAE 798
D WS G++L+EM V + S+ +Q + I C+ + P E
Sbjct: 267 KTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSI--IRCMQVHPLE 312
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 44.2 bits (104), Expect = 2e-04
Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 60/161 (37%)
Query: 620 EEPLARFYIAELTCAVESVHKMGF------IHRDIKPDNILIDRDGHIKLTDFGLCTGFR 673
EE L+ + ++CA + M + IHRD+ N+L+ D +K+ DFGL G
Sbjct: 128 EEQLS--FKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARG-- 183
Query: 674 WTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHS 733
H+ YY+ + GR P+K
Sbjct: 184 -VHDIDYYKKTSN-GRL-----------------------PVK----------------- 201
Query: 734 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM--LVGSP 772
++APE L YT D WS G++++E+ L GSP
Sbjct: 202 ------WMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSP 236
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 44.3 bits (105), Expect = 2e-04
Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 36/177 (20%)
Query: 162 SYSASIQSRQSPTQSPSSGIYSGPGSTGSPS--------PI--PPTRPAPLQAWSSRQ-- 209
S S S ++ SP+ + ++ + + PI PT+ AP Q + +Q
Sbjct: 84 SSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQQRI 143
Query: 210 --------AKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP 261
A +Q Q + Q T+ PT+P + + S + P P
Sbjct: 144 ELPGNISDALSQ----QQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTP 199
Query: 262 TTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPAS 318
+P AT + A + T P + + + S +PAS
Sbjct: 200 PQKP----------ATKKPAVNHHKTATVAVPPATSGKP--KSGAASARALSSAPAS 244
Score = 42.4 bits (100), Expect = 8e-04
Identities = 42/193 (21%), Positives = 59/193 (30%), Gaps = 44/193 (22%)
Query: 171 QSPTQSPSSGI-----------YSGP-----GSTGSPSPIPPTRPAPLQAWSSRQAKTQP 214
+SPT+ S SG G+ SPS T + A Q
Sbjct: 59 KSPTEHESQQSSNNAGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQD 118
Query: 215 VVIMQSVKSTPVQKPSLQTAIAPTS------PPSYSSSIQQQQ--------QKPQPPSPV 260
+ + TP Q QT P P + S ++ QQQ S +
Sbjct: 119 IS-APPISPTPTQAAPPQT---PNGQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTL 174
Query: 261 PT---TEPPSYASTMQALATSR-----VATISIPESNTTTTTTTPAHPLLQRKFSPGDSR 312
PT T PS + + A A + P N T T P K P
Sbjct: 175 PTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGK--PKSGA 232
Query: 313 SESPASASSTESR 325
+ + A +S+ S
Sbjct: 233 ASARALSSAPASH 245
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 43.7 bits (103), Expect = 2e-04
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 57/193 (29%)
Query: 597 LYFVMDYIPGGDLMSLL-IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
LY V +++ G L++ L ++G + + ++ +E + + FIHRD+ N L+
Sbjct: 74 LYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLV 133
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPL 715
G +K++DFG+ R+ + +Y S+G P+
Sbjct: 134 SSTGVVKVSDFGMT---RYVLDDEYTSSSG-------------------------AKFPV 165
Query: 716 KPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GSPPF 774
K + PEV + Y+ D WS GV+++E+ G PF
Sbjct: 166 K-----------------------WSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPF 202
Query: 775 LANTSAETQYKVI 787
++ Y+V+
Sbjct: 203 ----EKKSNYEVV 211
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 44.6 bits (105), Expect = 2e-04
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 740 YIAPEVLL-RTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAE 798
Y APE++L T YT D WS+G I+ EM++G P F +S + ++I L P E
Sbjct: 236 YRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQ---VLGTPTE 292
Query: 799 AQL---SPEGADL 808
QL +P AD+
Sbjct: 293 DQLKEMNPNYADI 305
Score = 39.6 bits (92), Expect = 0.007
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 623 LARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGH-IKLTDFG 667
L + Y +L A+ +H HRD+KP N+LID + H +KL DFG
Sbjct: 171 LVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFG 216
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 43.6 bits (102), Expect = 4e-04
Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 13/162 (8%)
Query: 163 YSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVK 222
Y S+Q S SS IY G + + A + P Q+
Sbjct: 217 YGVSVQDIMSWNNLSSSSIYVG-------QKLAIKQTANTATPKAEVKTEAPAAEKQA-- 267
Query: 223 STPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQ---PPSPVPTTEPPSYASTMQALATSR 279
PV K + T A T ++ Q + P P+P P+T + + +
Sbjct: 268 -APVVKENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTN 326
Query: 280 VATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASS 321
S P NT T T + + + G S + S +SAS+
Sbjct: 327 NTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSASA 368
Score = 34.8 bits (79), Expect = 0.20
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 13/163 (7%)
Query: 193 PIPPTRPAPLQAWSSRQAKTQPVV----IMQSVKS-TPVQKPSLQTAIAPTSPPSY---S 244
T PAP A + K PVV +VKS + S++ ++ S+ S
Sbjct: 176 TTQATTPAPKVA----ETKETPVVDQNATTHAVKSGDTIWALSVKYGVSVQDIMSWNNLS 231
Query: 245 SSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQR 304
SS QK T P + T A + A + +NT T TT Q+
Sbjct: 232 SSSIYVGQKLAIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQ 291
Query: 305 KFSP-GDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGT 346
+ +P + + PA A ST + T+++ NN N + +
Sbjct: 292 QTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPS 334
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 43.1 bits (101), Expect = 4e-04
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 730 LAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPPFLANTSAETQYKVI-- 787
S+V T Y APEVLL++ Y D WSVG I EM P F ++ + K++
Sbjct: 165 ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDV 224
Query: 788 -------NWESCLHIPAEA----------QLSPE----GADLILQL-CTGADKRLGKNAS 825
+W + +P +A + + G DL+L+ KR+ ++
Sbjct: 225 IGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 284
Query: 826 EVKAHPFF 833
+HP+F
Sbjct: 285 --LSHPYF 290
Score = 41.9 bits (98), Expect = 8e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+L ++ +H +HRD+KP NIL+ G IKL DFGL
Sbjct: 118 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL 156
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 43.1 bits (101), Expect = 4e-04
Identities = 40/150 (26%), Positives = 57/150 (38%), Gaps = 58/150 (38%)
Query: 631 LTCAVESVHKMGF------IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSN 684
++CA + M + IHRD+ N+L+ D +K+ DFGL R HN YY+
Sbjct: 137 VSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLA---RDVHNIDYYKKT 193
Query: 685 GDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPE 744
+ GR P+K ++APE
Sbjct: 194 TN-GRL-----------------------PVK-----------------------WMAPE 206
Query: 745 VLLRTGYTQLCDWWSVGVILYEMLV--GSP 772
L YT D WS GV+L+E+ GSP
Sbjct: 207 ALFDRVYTHQSDVWSFGVLLWEIFTLGGSP 236
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 43.2 bits (102), Expect = 5e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 625 RFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+F++ +L A++ +H HRD+KP NIL + D +K+ DFGL
Sbjct: 106 QFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGL 149
Score = 34.4 bits (79), Expect = 0.24
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 735 VGTPNYIAPEVL--LRTGYTQLCDWWSVGVILYEMLVGSPPF 774
V T Y APE+ + YT D WS+G I E+L G P F
Sbjct: 167 VATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLF 208
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 42.6 bits (100), Expect = 5e-04
Identities = 34/177 (19%), Positives = 54/177 (30%), Gaps = 15/177 (8%)
Query: 154 AAAPPPPPSYSASIQ---SRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
++ P S SI + Q+ Q P+ G S ++ +PP P Q
Sbjct: 36 TSSSEAPASAEKSIDLNGATQANAQQPAPGPTSAENTS-QDLSLPPISSTPTQGQEPLAQ 94
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYAS 270
Q V +Q L A S +++ P P+ V S +
Sbjct: 95 DGQQRVEVQG---------DLNNAAVQPQNLSQLNNVAVTSTLPTEPATVAPVRNASVPT 145
Query: 271 TMQALATSRVAT--ISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESR 325
+ T V +S P T A + SP + + PA + S
Sbjct: 146 AERPAITRPVRAQAVSEPAVEPKAAKTATATEAKVQTASPAQTPATPPAGKGAAASG 202
Score = 37.6 bits (87), Expect = 0.020
Identities = 27/130 (20%), Positives = 40/130 (30%), Gaps = 13/130 (10%)
Query: 154 AAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQ 213
AA P S ++ + P++ S + TRP QA S A
Sbjct: 109 AAVQPQNLSQLNNVAVTSTLPTEPATVAPVRNASVPTAERPAITRPVRAQA-VSEPAVEP 167
Query: 214 PVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQ 273
+ VQ A P +PP+ + Q K P S Y T+Q
Sbjct: 168 KAAKTATATEAKVQT--ASPAQTPATPPAGKGAAASGQLKSAPSS--------HY--TLQ 215
Query: 274 ALATSRVATI 283
A+ +
Sbjct: 216 LSASGSYDNV 225
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 42.7 bits (100), Expect = 6e-04
Identities = 39/146 (26%), Positives = 52/146 (35%), Gaps = 54/146 (36%)
Query: 634 AVESVHKMGFIHRDIKPDNILI----DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR 689
+ +H +HRD+KP NIL+ G +K+ D G
Sbjct: 120 GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA-------------------- 159
Query: 690 QDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT 749
R NSPLKPL +V T Y APE+LL
Sbjct: 160 -------------------RLFNSPLKPLAD----------LDPVVVTFWYRAPELLLGA 190
Query: 750 -GYTQLCDWWSVGVILYEMLVGSPPF 774
YT+ D W++G I E+L P F
Sbjct: 191 RHYTKAIDIWAIGCIFAELLTSEPIF 216
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 43.3 bits (102), Expect = 6e-04
Identities = 38/213 (17%), Positives = 57/213 (26%), Gaps = 37/213 (17%)
Query: 137 FVMDYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP 196
F ++ +KL P PP S T S G +
Sbjct: 674 FYLEAYDPDKLKPILKLFRDPPVGWLPYT--NSLYKATTLSSEAKNPDTVKIGQALTVYG 731
Query: 197 TRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQP 256
+ A + + + P T+I + + P
Sbjct: 732 SLEVF-PAGENWGFIPTTKRVKVRI-MDPAS--GTGTSITTSGTFTAEV----------P 777
Query: 257 PSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESP 316
SP T SY++ ++ I ++ T T TTT S SP
Sbjct: 778 QSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTS---------------SPSP 822
Query: 317 ASASSTESRTPPLPPTTSSSVNNKNMTNGTGGG 349
+S + TTS S TGGG
Sbjct: 823 TQTTSPTQTSTSTTTTTSPS------QTTTGGG 849
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 42.3 bits (99), Expect = 6e-04
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 59/183 (32%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEP-------LARFYIAELTCAVESVHKMGFIHRDIKPDN 652
++ ++ GDL S L+ + + P L +F + ++ +E + FIHRD+ N
Sbjct: 84 ILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKF-MTDIASGMEYLSSKSFIHRDLAARN 142
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+++ + ++ + DFGL + K Y NGD+ RQ R
Sbjct: 143 CMLNENMNVCVADFGL--------SKKIY--NGDYYRQG-----------------RIAK 175
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GS 771
P+K +IA E L YT D WS GV ++E+ G
Sbjct: 176 MPVK-----------------------WIAIESLADRVYTTKSDVWSFGVTMWEIATRGQ 212
Query: 772 PPF 774
P+
Sbjct: 213 TPY 215
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 41.8 bits (99), Expect = 6e-04
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLAR---FYIAELTCAVESVHKMGFIHRDIKPDNILID 656
VM+YI G L L+ G+ E L+R + +L H G IH D+ N+++
Sbjct: 77 VMEYIEGEPLKDLINSNGMEELELSREIGRLVGKL-------HSAGIIHGDLTTSNMIL- 128
Query: 657 RDGHIKLTDFGL 668
G I L DFGL
Sbjct: 129 SGGKIYLIDFGL 140
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 42.3 bits (99), Expect = 7e-04
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKM--------------- 641
LY ++Y P G+L+ L K + E A F IA T + S ++
Sbjct: 83 LYLAIEYAPHGNLLDFLRKSRVLETDPA-FAIANSTASTLSSQQLLHFAADVARGMDYLS 141
Query: 642 --GFIHRDIKPDNILIDRDGHIKLTDFGLCTG 671
FIHRD+ NIL+ + K+ DFGL G
Sbjct: 142 QKQFIHRDLAARNILVGENYVAKIADFGLSRG 173
Score = 31.5 bits (71), Expect = 1.9
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 740 YIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPFLANTSAETQYKV 786
++A E L + YT D WS GV+L+E++ +G P+ T AE K+
Sbjct: 189 WMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKL 236
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 42.1 bits (99), Expect = 7e-04
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 588 VMKGSPHNNL-------------YFVMDYIPGGDLMSLLIKKGIFE-EPLARFYIA-ELT 632
VMK H NL Y + +++ G+L+ L + E + Y+A +++
Sbjct: 55 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQIS 114
Query: 633 CAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
A+E + K FIHRD+ N L+ + +K+ DFGL
Sbjct: 115 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGL 150
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 42.8 bits (101), Expect = 7e-04
Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 9/135 (6%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P + + P + AA P P + +A + SPS + S + P P +
Sbjct: 375 PKQHIKPVFTQPAAAPQPSAAAA-------ASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSP--PSYSSSIQQQQQKPQPPSPV 260
P K + ++ S PS IQ++ ++
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKE 487
Query: 261 PTTEPPSYASTMQAL 275
T T + L
Sbjct: 488 APTGTQKEIFTEEDL 502
Score = 35.9 bits (83), Expect = 0.11
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 189 GSPSPIPPTRPAPLQAWSSRQAKTQPVV-IMQSVKSTPVQKPSLQTAIAPTSPPSYSSSI 247
G P +P Q ++ Q S S Q + Q+A P P S
Sbjct: 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVD 430
Query: 248 QQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIP 286
PPS P P+ + + S+V+++
Sbjct: 431 PPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPS 469
Score = 35.1 bits (81), Expect = 0.21
Identities = 15/89 (16%), Positives = 26/89 (29%)
Query: 228 KPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPE 287
KP A P + +++ Q P A T ++ A + +
Sbjct: 380 KPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNP 439
Query: 288 SNTTTTTTTPAHPLLQRKFSPGDSRSESP 316
+T PA ++K S P
Sbjct: 440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGP 468
Score = 31.7 bits (72), Expect = 2.0
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 249 QQQQKPQPPSPVPTTEPPSYASTMQALATSRV-ATISIPESNTTTTTTTPAHPLLQRKFS 307
+Q KP P +P + A+ + + S A S P+S T T P +
Sbjct: 376 KQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVD----- 430
Query: 308 PGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMT 343
P + +P S + R V+ +
Sbjct: 431 PPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSL 466
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 41.9 bits (98), Expect = 7e-04
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 597 LYFVMDYIPGGDLMSLLIKKG--IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
+Y VM+ +PGGD +S L KK + + L +F + + + + IHRD+ N L
Sbjct: 67 IYIVMELVPGGDFLSFLRKKKDELKTKQLVKFAL-DAAAGMAYLESKNCIHRDLAARNCL 125
Query: 655 IDRDGHIKLTDFGL 668
+ + +K++DFG+
Sbjct: 126 VGENNVLKISDFGM 139
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 41.4 bits (98), Expect = 8e-04
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLARFY-IAELTCAVESVHKMGFIHRDIKPDNILIDRD 658
VM+YI G L K I E I L + HK G +H D+ NI++ RD
Sbjct: 75 VMEYIEGKPL-----KDVIEEGNDELLREIGRLVGKL---HKAGIVHGDLTTSNIIV-RD 125
Query: 659 GHIKLTDFGL 668
+ L DFGL
Sbjct: 126 DKLYLIDFGL 135
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 42.3 bits (100), Expect = 8e-04
Identities = 21/121 (17%), Positives = 33/121 (27%), Gaps = 8/121 (6%)
Query: 156 APPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPV 215
P + +R SP S P P + P +A Q +P
Sbjct: 71 VNHAPANAQEHEAARPSPQHQYQPPY-------ASAQPRQPVQQPP-EAQVPPQHAPRPA 122
Query: 216 VIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQAL 275
P +P + + P + + Q PQP P A + +
Sbjct: 123 QPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPV 182
Query: 276 A 276
A
Sbjct: 183 A 183
Score = 38.1 bits (89), Expect = 0.016
Identities = 32/124 (25%), Positives = 38/124 (30%), Gaps = 19/124 (15%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
E PSP PP AS Q RQ Q P + P P P
Sbjct: 78 AQEHEAARPSPQHQYQPP---YASAQPRQPVQQPPE-----------AQVPPQH-APRPA 122
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
Q + Q QP Q P+Q+P P + QQ +P P P
Sbjct: 123 Q--PAPQPVQQPAY--QPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQ 178
Query: 263 TEPP 266
EP
Sbjct: 179 PEPV 182
Score = 35.8 bits (83), Expect = 0.095
Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 16/118 (13%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
Y P A+ P +++ P +P P P+ P PLQ S
Sbjct: 91 QYQPPYASAQPRQPVQQPPEAQVPPQHAPR-PAQPAPQPVQQPAYQPQP-EQPLQQPVSP 148
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
Q P +P+ Q P P + Q +P P P + P
Sbjct: 149 QVAPAPQP------VHSAPQPAQQAF-QPAEP------VAAPQPEPVAE-PAPVMDKP 192
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 42.4 bits (99), Expect = 8e-04
Identities = 39/146 (26%), Positives = 52/146 (35%), Gaps = 54/146 (36%)
Query: 634 AVESVHKMGFIHRDIKPDNILI----DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR 689
+ +H +HRD+KP NIL+ G +K+ D G
Sbjct: 120 GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA-------------------- 159
Query: 690 QDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT 749
R NSPLKPL +V T Y APE+LL
Sbjct: 160 -------------------RLFNSPLKPLAD----------LDPVVVTFWYRAPELLLGA 190
Query: 750 -GYTQLCDWWSVGVILYEMLVGSPPF 774
YT+ D W++G I E+L P F
Sbjct: 191 RHYTKAIDIWAIGCIFAELLTSEPIF 216
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 41.9 bits (98), Expect = 9e-04
Identities = 56/265 (21%), Positives = 105/265 (39%), Gaps = 59/265 (22%)
Query: 574 EVTLVRKIDTNHLYVMKG-SPHNNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAEL 631
E +++++D ++ M G + VM+ G L L K K + E+ + + ++
Sbjct: 46 EANVMQQLDNPYIVRMIGICEAESWMLVMELAELGPLNKFLQKNKHVTEKNITEL-VHQV 104
Query: 632 TCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQD 691
+ ++ + + F+HRD+ N+L+ + K++DFGL N YY++ HG+
Sbjct: 105 SMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADEN--YYKAKT-HGK-- 159
Query: 692 SMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGY 751
W P+K + APE + +
Sbjct: 160 -------W--------------PVK-----------------------WYAPECMNYYKF 175
Query: 752 TQLCDWWSVGVILYEML-VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLIL 810
+ D WS GV+++E G P+ E + ES + + PE DL +
Sbjct: 176 SSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMI---ESGERMECPQRCPPEMYDL-M 231
Query: 811 QLC--TGADKRLGKNASEVKAHPFF 833
+LC G D+R G E++ ++
Sbjct: 232 KLCWTYGVDERPGFAVVELRLRNYY 256
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 41.9 bits (98), Expect = 0.001
Identities = 40/150 (26%), Positives = 58/150 (38%), Gaps = 58/150 (38%)
Query: 631 LTCAVESVHKMGF------IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSN 684
++CA + M + IHRD+ N+L+ D +K+ DFGL R H+ YY+
Sbjct: 143 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLA---RDIHHIDYYKKT 199
Query: 685 GDHGRQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPE 744
+ GR P+K ++APE
Sbjct: 200 TN-GRL-----------------------PVK-----------------------WMAPE 212
Query: 745 VLLRTGYTQLCDWWSVGVILYEM--LVGSP 772
L YT D WS GV+L+E+ L GSP
Sbjct: 213 ALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 242
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 41.5 bits (97), Expect = 0.001
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 597 LYFVMDYIPGGDLMSLLIKKG---IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNI 653
LY V +Y+ G L+ L +G + + L +F + ++ A+E + F+HRD+ N+
Sbjct: 75 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSL-DVCEAMEYLEANNFVHRDLAARNV 133
Query: 654 LIDRDGHIKLTDFGL 668
L+ D K++DFGL
Sbjct: 134 LVSEDNVAKVSDFGL 148
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 42.4 bits (99), Expect = 0.001
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P+ + + AP P + +++ + Q+P+ +P P P A
Sbjct: 46 PHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLA 105
Query: 209 QAKT-QPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPS 267
A + S + A A TS S +KP P + + PP
Sbjct: 106 AAPKPDAAE---AFTSAAQAHEA--PADAGTSAAS---------KKPDPAAHTQHSPPPF 151
Query: 268 -YASTMQALATSRVATISIP 286
Y +M+ +A + IP
Sbjct: 152 AYTRSMEHIACTHGGIQFIP 171
Score = 33.5 bits (76), Expect = 0.49
Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 224 TPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQP---PSPVPTTEP-PSYASTMQA----- 274
T + P L T+ A P + Q + P P P+ + +P + A T A
Sbjct: 24 TNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFD 83
Query: 275 -LATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASA-SSTESRTPP---- 328
A P+ P F+ E+PA A +S S+ P
Sbjct: 84 PAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAH 143
Query: 329 ---LPPTTSSSVNNKNMTNGTGGGRTYKINHQSPIP 361
PP + + + +++ GG + H+ +P
Sbjct: 144 TQHSPPPFAYTRSMEHIACTHGGIQFIPYFHKFILP 179
Score = 33.2 bits (75), Expect = 0.65
Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 18/147 (12%)
Query: 158 PPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVI 217
P P ++++ + P +P P +P+ +P QA + A +
Sbjct: 27 PIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTP-AASEKF--- 82
Query: 218 MQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALAT 277
A AP S + Q P P S A +A A
Sbjct: 83 --------------DPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPAD 128
Query: 278 SRVATISIPESNTTTTTTTPAHPLLQR 304
+ + S T +P R
Sbjct: 129 AGTSAASKKPDPAAHTQHSPPPFAYTR 155
Score = 29.7 bits (66), Expect = 8.3
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 257 PSPVPTTEPPSYASTMQA--LATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSE 314
+ +P E + A+T + A P+ T+ P L + +P S
Sbjct: 23 NTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKF 82
Query: 315 SPASASSTESRTPPLPPTTSSS 336
PA A + P P
Sbjct: 83 DPAPAPHQAASRAPDPAVAPQL 104
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 41.2 bits (96), Expect = 0.001
Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 68/239 (28%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL-------TCAVESVHKMGFIHRDIK 649
+Y VM+ + GGD ++ L +G R + EL +E + IHRD+
Sbjct: 68 IYIVMELVQGGDFLTFLRTEG------PRLKVKELIQMVENAAAGMEYLESKHCIHRDLA 121
Query: 650 PDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECR 709
N L+ +K++DFG+ S E G
Sbjct: 122 ARNCLVTEKNVLKISDFGM---------------------------SREEEDGVYASTGG 154
Query: 710 CINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML- 768
P+K + APE L Y+ D WS G++L+E
Sbjct: 155 MKQIPVK-----------------------WTAPEALNYGRYSSESDVWSFGILLWEAFS 191
Query: 769 VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKRLGKNASEV 827
+G+ P+ ++ +T+ + E + +P +L P+ +++ C D + S V
Sbjct: 192 LGAVPYANLSNQQTREAI---EQGVRLPC-PELCPDAVYRLMERCWEYDPGQRPSFSTV 246
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 41.5 bits (98), Expect = 0.002
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKM----GFIHRDIKPDNILI 655
M++I G + + K + R +AEL V + + GF H D P NIL+
Sbjct: 244 TMEWIDGIKISDIAALK---SAGIDRKELAEL--LVRAFLRQLLRDGFFHADPHPGNILV 298
Query: 656 DRDGHIKLTDFG----LCTGFRWTHNSKYY 681
DG I L DFG L FR
Sbjct: 299 RSDGRIVLLDFGIVGRLDPKFRRYLAELLL 328
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 41.6 bits (97), Expect = 0.002
Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 22/219 (10%)
Query: 102 NQVAHVKAERDIL---AEADNEWVVKLYY--SFQDKDNLYFVMDYIPGEKLIPYPSPAAA 156
+ +AH + DIL A+ + ++LYY + K +L D G + A A
Sbjct: 300 SALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFA 359
Query: 157 PPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA--PLQAWSSR----QA 210
P S A+ + QSPS+ + P P P A P+Q S+ +
Sbjct: 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEG 419
Query: 211 KT-QPVVIMQSVKSTPVQ-KPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
KT PV ++ P + P A T+ S + SIQ + T P +
Sbjct: 420 KTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTS-AKSIQTASE--------AETPPENQ 470
Query: 269 ASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFS 307
S +A A +S S T + F+
Sbjct: 471 VSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFA 509
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 41.4 bits (98), Expect = 0.002
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 6/116 (5%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
P + P S A+ + + + P+ P PA ++ Q
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPP------PPASAPQQAPAVPLPETTSQL 422
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
+ ++ +T +K A S + + P P +
Sbjct: 423 LAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA 478
Score = 39.5 bits (93), Expect = 0.008
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 17/112 (15%)
Query: 190 SPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSI-- 247
+P P P P +S QA P + ++ V P AP P+
Sbjct: 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS---APQQAPAVPLPETT 419
Query: 248 ------------QQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPE 287
Q K + P + S ++ LA+ R A ++ +
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEK 471
Score = 39.1 bits (92), Expect = 0.010
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 214 PVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYA--ST 271
P + + P +A A +P + + Q P PP+ P P +T
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAP-PQAPAVPPPPASAPQQAPAVPLPETT 419
Query: 272 MQALA------TSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTE-S 324
Q LA ++ AT + + P + L+R S + S + + E
Sbjct: 420 SQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479
Query: 325 RTPPLPP 331
R P
Sbjct: 480 RWKATNP 486
Score = 34.5 bits (80), Expect = 0.27
Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 22/138 (15%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
+P AP P + S Q + Q + G P +R P+ + R A
Sbjct: 405 SAPQQAPAVPLPETTS-QLLAARQQLQRA---QGATKAKKSEPAAASRARPVNSALERLA 460
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYAS 270
+P AP +Y + + P P P +
Sbjct: 461 SVRPAPS--------------ALEKAPAKKEAY----RWKATNPVEVKKEPVATPKALKK 502
Query: 271 TMQALATSRVATISIPES 288
++ T +A E+
Sbjct: 503 ALEHEKTPELAAKLAAEA 520
Score = 33.7 bits (78), Expect = 0.52
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 15/124 (12%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
+ P+ A APP P + +P Q+P P+P T L
Sbjct: 379 ASAQATAAPTAAVAPPQAP--AVPPPPASAPQQAP-------------AVPLPETTSQLL 423
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
A Q +S + + + +A+ + + S ++ +
Sbjct: 424 AARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKA 483
Query: 263 TEPP 266
T P
Sbjct: 484 TNPV 487
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 41.4 bits (97), Expect = 0.002
Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 16/178 (8%)
Query: 163 YSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKT---QPVVIMQ 219
YS S +P+ SPSS + P +G S + R S + + + I
Sbjct: 387 YSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRR-VGTPGSKSDRVGAVLLRRMNIKP 445
Query: 220 SVKSTPVQKPSL-QTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATS 278
++ S P +KPS + P+ S+ ++ K P + L S
Sbjct: 446 TLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKL--KLTLS 503
Query: 279 RVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSS 336
+ +S +S T P R S S S + S P P T S
Sbjct: 504 SIPPLSPRQSIITL-------PTPSR--PASRISSLSLRLGSYSGSIVSPPPYPTLVS 552
Score = 37.9 bits (88), Expect = 0.024
Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 4/121 (3%)
Query: 146 KLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR---PAPL 202
KL P +P + S S S + S GS SP P P A
Sbjct: 499 KLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAG 558
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
+++ + + I + P + P+L T+ SSS+ P VP
Sbjct: 559 LSFNRSVSDIEGERIGRY-NLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFPGSVPR 617
Query: 263 T 263
Sbjct: 618 F 618
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation
factor (transactivator). This family includes EBV BRLF1
and similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 41.3 bits (97), Expect = 0.002
Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 23/205 (11%)
Query: 147 LIPYPSPAAAPPPPPS------YSASIQSRQSPTQSP---SSGIYSGPGSTGSPSPIPPT 197
P P + P PS + + TQSP +S P S S P
Sbjct: 219 HPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPASPSSRRPSTAQ 278
Query: 198 RPAPLQAWSSRQAKTQPVV--IMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQ 255
+ S + Q V + QS S P P+ T PP+ + ++ ++PQ
Sbjct: 279 EE-QIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNKK-AKRDRRPQ 336
Query: 256 PPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSES 315
+P S T R A P + + + PLL S D+ S
Sbjct: 337 MVTPKQEGGAAV--SQNHDGGTVR-APRGRPSGSGQSPPSN--SPLL---SSLADTP--S 386
Query: 316 PASASSTESRTPPLPPTTSSSVNNK 340
A+ P + ++K
Sbjct: 387 GAAHQPASLLPPAVVQQQLEDASDK 411
>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase
[Signal transduction mechanisms].
Length = 204
Score = 39.6 bits (93), Expect = 0.003
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 595 NNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNIL 654
+N VM+YI G L L + L R E+ V +HK G +H D+ NI+
Sbjct: 72 DNGLIVMEYIEGELLKDALEEARP---DLLR----EVGRLVGKLHKAGIVHGDLTTSNII 124
Query: 655 IDRDGHIKLTDFGL 668
+ G I DFGL
Sbjct: 125 L-SGGRIYFIDFGL 137
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 40.5 bits (94), Expect = 0.003
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 218 MQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALAT 277
+ + + PV A+ P+S + SS+I P+ +P++ A+T QA A
Sbjct: 293 IDTHGTVPV------AAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAV 346
Query: 278 SRVATISIPESNTTTTT-----TTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPT 332
+ + +P T T P + Q + +S + S+ T LP
Sbjct: 347 ALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAA 406
Query: 333 TSSSV 337
+S++
Sbjct: 407 PASNI 411
Score = 35.1 bits (80), Expect = 0.16
Identities = 23/126 (18%), Positives = 33/126 (26%), Gaps = 14/126 (11%)
Query: 183 SGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPS 242
P S + S S A P VI SV + ++
Sbjct: 304 VTPSSAVTQSSAITP---------SSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVL 354
Query: 243 YSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLL 302
S PV P + Q +T + + + TT+ PA P
Sbjct: 355 PSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITS-----TANGPTTSLPAAPAS 409
Query: 303 QRKFSP 308
SP
Sbjct: 410 NIPVSP 415
Score = 33.5 bits (76), Expect = 0.46
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 10/128 (7%)
Query: 153 PAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKT 212
P AA P SA QS S + P S QA S+ +
Sbjct: 300 PVAAVTPS---SAVTQSSAITPSSAAI---PSPAVIPSSVTTQSA--TTTQA-SAVALSS 350
Query: 213 QPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTE-PPSYAST 271
V+ V P+ + P S + + Q + PTT P + AS
Sbjct: 351 AGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASN 410
Query: 272 MQALATSR 279
+ TSR
Sbjct: 411 IPVSPTSR 418
Score = 31.6 bits (71), Expect = 2.1
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 149 PYPSPAAAPPP-----PPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQ 203
PS AA P P + ++ ++ S S+G+ + +P P +Q
Sbjct: 316 ITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQ 375
Query: 204 AWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQ 249
+TQ + SL A A P S +S Q
Sbjct: 376 PQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 40.9 bits (96), Expect = 0.003
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 6/110 (5%)
Query: 214 PVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQ 273
PV Q K T ++ AP++ P +++ ++P + P PP
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV---- 417
Query: 274 ALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTE 323
A T T P P + A E
Sbjct: 418 --APPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
Score = 39.4 bits (92), Expect = 0.009
Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 50/178 (28%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWS 206
L+P P+P A P + S PT +PS+ + + IPP P
Sbjct: 360 LVPVPAPQPAKPTAAAPSPV-----RPTPAPST-----RPKAAAAANIPPKEPVR----- 404
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEP- 265
+ T P V + V + PV AP + +KP+ P P E
Sbjct: 405 --ETATPPPVPPRPV-APPVPHTP---ESAPKLTRAAI----PVDEKPKYTPPAPPKEEE 454
Query: 266 ------------------------PSYASTMQALATSRVATISIPESNTTTTTTTPAH 299
P + +QAL +S V +S+ ++ T + + H
Sbjct: 455 KALIADGDVLEQLEAIWKQILRDVPPRSPAVQALLSSGVRPVSVEKNTLTLSFKSKFH 512
Score = 30.5 bits (69), Expect = 4.3
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 254 PQPPSPVPTTEPPSYASTMQALATSRVATISIP----ESNTTTTTTTPAHPLLQRKFSPG 309
PQP P P + + A +IP T T P P+
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP 425
Query: 310 DSRSESPASASSTESR---TPPLPPTTSSSVNNKNMTN 344
+S + +A + + TPP PP +
Sbjct: 426 ESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 30.5 bits (69), Expect = 4.6
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 16/101 (15%)
Query: 143 PGEKLIPYPSPAAA-PPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIP--PTRP 199
P PP + P S P T + P+ P
Sbjct: 391 AAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPE-----SAPKLTRAAIPVDEKPKYT 445
Query: 200 APLQAWSSRQAKTQPVVIMQSVKST--------PVQKPSLQ 232
P +A +++ +++ P + P++Q
Sbjct: 446 PPAPPKEEEKALIADGDVLEQLEAIWKQILRDVPPRSPAVQ 486
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 40.4 bits (95), Expect = 0.003
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 38/165 (23%)
Query: 516 GAFGEVTLVRKIDTNHLYVMKTIYKCVGVFG----------EVTLVRKIDTNHLYVMKTI 565
GA+G V + +TN +K I F E+ L+R +D ++ +K I
Sbjct: 16 GAYGIVCSAKNSETNEKVAIKKIAN---AFDNRIDAKRTLREIKLLRHLDHENVIAIKDI 72
Query: 566 YKCVG--AFGEVTLVRKIDTNHLYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPL 623
AF +V +V Y +MD DL ++ +
Sbjct: 73 MPPPHREAFNDVYIV-------------------YELMD----TDLHQIIRSSQTLSDDH 109
Query: 624 ARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
++++ +L ++ +H +HRD+KP N+L++ + +K+ DFGL
Sbjct: 110 CQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGL 154
Score = 37.7 bits (88), Expect = 0.025
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 735 VGTPNYIAPEVLLR-TGYTQLCDWWSVGVILYEMLVGSPPF 774
V T Y APE+LL + YT D WSVG I E+L P F
Sbjct: 169 VVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLF 209
Score = 33.1 bits (76), Expect = 0.67
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 453 FIKIKPIGVGAFGEVTLVRKIDTNHLYAMKTIYKCVGAFG----------EVTLVRKIDT 502
++ IKPIG GA+G V + +TN A+K I AF E+ L+R +D
Sbjct: 7 YVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIAN---AFDNRIDAKRTLREIKLLRHLDH 63
Query: 503 NHLYVMKTIYKCVG--AFGEVTLV 524
++ +K I AF +V +V
Sbjct: 64 ENVIAIKDIMPPPHREAFNDVYIV 87
>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
Length = 234
Score = 39.9 bits (92), Expect = 0.003
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 8/147 (5%)
Query: 232 QTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY-ASTMQALATSRVATISIPESNT 290
+T++ TS S ++S +P P+ PS ST ++ + T +I +NT
Sbjct: 19 ETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNT 78
Query: 291 TTTTTT----PAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGT 346
TT T+T P + + + + ++TE+ T TS N ++ T
Sbjct: 79 TTVTSTGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTS---NVTTRSSST 135
Query: 347 GGGRTYKINHQSPIPERKHMTKEKEDE 373
T N + P +
Sbjct: 136 TSATTRITNATTLAPTLSSKGTSNATK 162
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 40.8 bits (95), Expect = 0.003
Identities = 30/120 (25%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 155 AAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQP 214
AAP P + + + S P P+ PG + P PAP + + + QP
Sbjct: 334 AAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQ---TGEPVIAPAP-EGYPQQSQYAQP 389
Query: 215 VVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQA 274
V PVQ A A P +Q Q P P E P + QA
Sbjct: 390 AVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQA 449
Score = 37.4 bits (86), Expect = 0.045
Identities = 26/131 (19%), Positives = 35/131 (26%), Gaps = 8/131 (6%)
Query: 142 IPGEKLIPYPSPAAAP---PPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP-- 196
+PG + P A AP P Y+ P Q P P
Sbjct: 363 VPGPQ-TGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYY 421
Query: 197 --TRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKP 254
P Q A QPV + Q+ ++ + Q+P
Sbjct: 422 APAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQP 481
Query: 255 QPPSPVPTTEP 265
QP P EP
Sbjct: 482 QPVEQQPVVEP 492
Score = 36.6 bits (84), Expect = 0.070
Identities = 32/123 (26%), Positives = 39/123 (31%), Gaps = 17/123 (13%)
Query: 138 VMDYIPGEKLI-PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP 196
++D P E L P P P P + Q Q P Y P +P P
Sbjct: 735 LLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQ--YQQPQQPVAPQPQYQ 792
Query: 197 TRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQP 256
P+ Q QPV Q Q +AP P Y QQ Q+P
Sbjct: 793 QPQQPVAPQPQYQQPQQPVAPQP-------QYQQPQQPVAP--QPQY-----QQPQQPVA 838
Query: 257 PSP 259
P P
Sbjct: 839 PQP 841
Score = 34.3 bits (78), Expect = 0.36
Identities = 22/167 (13%), Positives = 38/167 (22%), Gaps = 6/167 (3%)
Query: 168 QSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQ 227
P ++ + P+ T P S QP V Q V
Sbjct: 314 APITEPVAVAAAATTATQSWAAPVEPVTQTPPVA----SVDVPPAQPTVAWQPVPGPQTG 369
Query: 228 KPSLQTAIAPTSPPSYSSSIQQQQQKP--QPPSPVPTTEPPSYASTMQALATSRVATISI 285
+P + A S + Q +P QP P P+ Q +
Sbjct: 370 EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429
Query: 286 PESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPT 332
+ P + + + + + P
Sbjct: 430 QQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEP 476
Score = 33.1 bits (75), Expect = 0.87
Identities = 32/158 (20%), Positives = 40/158 (25%), Gaps = 27/158 (17%)
Query: 173 PTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQ 232
P +P P +P P+ Q QPV +
Sbjct: 743 PLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 802
Query: 233 TAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTT 292
P P + QQ QQ P + P L
Sbjct: 803 QYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTL----------------- 845
Query: 293 TTTTPAHPLLQRKFSPGDSRS-ESPASA-SSTESRTPP 328
HPLL R GDSR P + S + TPP
Sbjct: 846 -----LHPLLMRN---GDSRPLHKPTTPLPSLDLLTPP 875
Score = 31.6 bits (71), Expect = 2.9
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 150 YPSPAAAPPPPPSYSASIQ--SRQSPTQSPSSGIYSGPGSTGSPSPIPP----TRPAPLQ 203
Y P P P Y Q + Q Q P + P P+ P +P
Sbjct: 778 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 837
Query: 204 AWSSRQAKTQPVVIMQSVKSTPVQKPS--LQTAIAPTSPPS 242
A + P+ +M++ S P+ KP+ L + T PPS
Sbjct: 838 APQPQDTLLHPL-LMRNGDSRPLHKPTTPLPSLDLLTPPPS 877
Score = 30.1 bits (67), Expect = 7.1
Identities = 26/153 (16%), Positives = 38/153 (24%), Gaps = 9/153 (5%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
P P P A Q + + Y+ P P AP ++Q
Sbjct: 362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQ--QPVQPQQPYYAPAAEQPAQQP 419
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQ-QKPQPPSPVPTTEPPSYA 269
P + + P A S+ Q + + P + P Y
Sbjct: 420 YYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLY- 478
Query: 270 STMQALATSRVATISIPESNTTTTTTTPAHPLL 302
V + E T PA P L
Sbjct: 479 -----QQPQPVEQQPVVEPEPVVEETKPARPPL 506
Score = 29.7 bits (66), Expect = 9.3
Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 10/119 (8%)
Query: 158 PPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVI 217
P P ++ ++ Q P Q + P+ P + Q P
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQ----QQYQQPQQPVAPQ-----PQYQQPQQPVAPQPQ 790
Query: 218 MQSVKSTPVQKPSLQTAIAPTSP-PSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQAL 275
Q + +P Q P +P P Y Q +PQ P P + + L
Sbjct: 791 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPL 849
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 39.9 bits (93), Expect = 0.004
Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 619 FEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNS 678
+ L + + ++ +E +H+ G H DIKP+NI++D + + D+G+ +
Sbjct: 123 KNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIAS-------- 174
Query: 679 KYYQSNGDHGRQDSMEPSEEWSQGT 703
++ +G H + + ++ +GT
Sbjct: 175 -HFIIHGKH--IEYSKEQKDLHRGT 196
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 40.3 bits (94), Expect = 0.004
Identities = 32/144 (22%), Positives = 48/144 (33%), Gaps = 21/144 (14%)
Query: 152 SPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSP-SPIPPTRPAPLQAWSSRQA 210
PP S P P S GP P +P P R +S +
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDP-ALPLSAPRLGPADVFVPATPRPTPRTT-----ASPET 220
Query: 211 KTQPVVIMQSVKSTPVQKPSLQT-AIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYA 269
P ST PS A + T + + + + P PP+P PP+ A
Sbjct: 221 TPTP--------STTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANA 272
Query: 270 S-----TMQALATSRVATISIPES 288
+ + L +++ I+IP S
Sbjct: 273 TPAPEASRYELTVTQIIQIAIPAS 296
Score = 32.2 bits (73), Expect = 1.4
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 9/81 (11%)
Query: 256 PPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSES 315
P TT P T + + +IP +TT + G +
Sbjct: 208 PRPTPRTTASPETTPTPSTTTSP--PSTTIPAPSTTIAAPQAG----TTPEAEGTPAPPT 261
Query: 316 PASASSTESRTPPLPPTTSSS 336
P E+ P +S
Sbjct: 262 PGGG---EAPPANATPAPEAS 279
Score = 31.5 bits (71), Expect = 2.4
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 19/105 (18%)
Query: 225 PVQKPSLQTA--IAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVAT 282
P+ P L A P +P + + P P + A + T
Sbjct: 191 PLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPS---------TT 241
Query: 283 ISIPESNTTTTTT-TPAHPLLQRKFSPGDSRS-ESPASASSTESR 325
I+ P++ TT TPA P +PG + + A+ + SR
Sbjct: 242 IAAPQAGTTPEAEGTPAPP------TPGGGEAPPANATPAPEASR 280
>gnl|CDD|221509 pfam12287, Caprin-1_C, Cytoplasmic
activation/proliferation-associated protein-1 C term.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 343 and 708 amino
acids in length. This family is the C terminal region of
caprin-1. Caprin-1 is a protein involved in regulating
cellular proliferation. In mutated phenotypes, the G1
phase of the cell cycle is greatly lengthened, impairing
normal proliferation. The C terminal region of caprin-1
contains RGG motifs which are characteristic of RNA
binding domains. It is possible that caprin-1 functions
through an RNA binding mechanism.
Length = 319
Score = 40.0 bits (93), Expect = 0.004
Identities = 56/240 (23%), Positives = 76/240 (31%), Gaps = 57/240 (23%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA-----P 201
+ P + P + + Q P SP+S Y+ PS RP P
Sbjct: 41 VCPPVHSESRLSQPSAVPVQPEPTQVPMVSPTSEGYTSSPPLYQPSHTAEPRPQTDPIDP 100
Query: 202 LQAW-----------SSRQAKTQPVVIMQ----------SVKSTPVQKPSLQTAI---AP 237
+QA SS A +QP V +V + P Q S+QT AP
Sbjct: 101 IQASMSLNSEQTPTSSSLPAASQPQVFQTGSKPLHSSGINVNAAPFQ--SMQTVFNMNAP 158
Query: 238 TSPPSYSSSIQQQQQKP---------QPPSPVPTTEPPSYASTMQALATSRVATISIPES 288
P + S++QQ Q QP PV TE +Q + V + +
Sbjct: 159 VPPVNEPESLKQQNQYQASYNQGFSSQPQHPVEQTELQQ--EQLQTV----VGSFHSQDQ 212
Query: 289 NTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGG 348
+ P Q PG R S SR P N + M NG G
Sbjct: 213 QAHQAASGHQQPSQQ---GPGFGRQGQSFYNSRGMSRGGPR--------NPRGMINGYRG 261
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 39.6 bits (92), Expect = 0.004
Identities = 55/266 (20%), Positives = 100/266 (37%), Gaps = 70/266 (26%)
Query: 543 GVFGEVTLVRKIDTNHLYV--MKTIYKCVGAF-GEVTLVRKIDTNHLY----VMKGSPHN 595
G FGEV + + V MK V AF E +++ + + L V+ P
Sbjct: 17 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEP-- 74
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARF--YIAELTCAVESVHKMGFIHRDIKPDNI 653
+Y + +++ G L+ L ++PL + + A++ + + + +IHRD++ NI
Sbjct: 75 -IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANI 133
Query: 654 LIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINS 713
L+ K+ DFGL R +++Y G
Sbjct: 134 LVSASLVCKIADFGLA---RVIEDNEYTAREG-------------------------AKF 165
Query: 714 PLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GSP 772
P+K + APE + +T D WS G++L E++ G
Sbjct: 166 PIK-----------------------WTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRI 202
Query: 773 PFLANTSAET------QYKVINWESC 792
P+ ++ E Y++ E+C
Sbjct: 203 PYPGMSNPEVIRALERGYRMPRPENC 228
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 40.0 bits (93), Expect = 0.004
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 52/131 (39%)
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
IHRD+ N+L+ + +K+ DFGL R +N YY+ + GR
Sbjct: 159 IHRDLAARNVLVTENNVMKIADFGLA---RDVNNIDYYKKTTN-GRL------------- 201
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI 763
P+K ++APE L YT D WS GV+
Sbjct: 202 ----------PVK-----------------------WMAPEALFDRVYTHQSDVWSFGVL 228
Query: 764 LYEM--LVGSP 772
++E+ L GSP
Sbjct: 229 MWEIFTLGGSP 239
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 39.8 bits (93), Expect = 0.004
Identities = 57/239 (23%), Positives = 84/239 (35%), Gaps = 71/239 (29%)
Query: 590 KGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHK-MGF----- 643
G P + + +Y GDL++ L +K E +L V K M F
Sbjct: 110 IGGP---ILVITEYCCYGDLLNFLRRK---RESFLTLE--DLLSFSYQVAKGMAFLASKN 161
Query: 644 -IHRDIKPDNILIDRDGHI-KLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQ 701
IHRD+ N+L+ G I K+ DFGL +D M S +
Sbjct: 162 CIHRDLAARNVLLT-HGKIVKICDFGLA--------------------RDIMNDSNYVVK 200
Query: 702 GTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVG 761
G P+K ++APE + YT D WS G
Sbjct: 201 GNA-------RLPVK-----------------------WMAPESIFNCVYTFESDVWSYG 230
Query: 762 VILYEML-VGSPPFLANTSAETQYKVINWESCLHIPAEAQLSPEGADLILQLCTGADKR 819
++L+E+ +GS P+ YK+I + P A P I++ C AD
Sbjct: 231 ILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHA---PAEIYDIMKTCWDADPL 286
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 39.9 bits (93), Expect = 0.005
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 734 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML 768
L GT APEVL R Y D WS G++L+EML
Sbjct: 216 LAGTVETNAPEVLARDKYNSKADIWSAGIVLFEML 250
Score = 34.9 bits (80), Expect = 0.17
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 638 VHKMGFIHRDIKPDNILIDRDGHIKLTDFG 667
+H IHRD+K +NI I+ + + D G
Sbjct: 173 LHAQRIIHRDVKTENIFINDVDQVCIGDLG 202
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 39.1 bits (91), Expect = 0.005
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 642 GFIHRDIKPDNILIDRDGHIK-LTDFGLCT 670
+H D+ P N+L+D G + + DF
Sbjct: 166 VLVHGDLHPGNLLVDPGGRVTGVIDFEDAG 195
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 39.3 bits (91), Expect = 0.006
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 597 LYFVMDYIPGGDLMSLLIKKG----IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
+Y V +Y+ G L+ L KG P A++ + V +M ++HRD++ N
Sbjct: 75 IYIVTEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAAN 132
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
IL+ + K+ DFGL R +++Y G
Sbjct: 133 ILVGENLVCKVADFGLA---RLIEDNEYTARQG 162
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 39.7 bits (93), Expect = 0.006
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGS-TGSPSPIPPTRPAPLQAWSSRQ 209
P+ A+ PP S P S S P + + S PP P S
Sbjct: 179 PASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPP 238
Query: 210 AKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQ 252
P P + + A +PPS S++
Sbjct: 239 GPAAP--------PPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
Score = 35.8 bits (83), Expect = 0.081
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 22/100 (22%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P P + + P +S QS P S S P +P P P
Sbjct: 195 PSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV------ 248
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPS 242
Q V KP+ +A A +P
Sbjct: 249 ----------------QQVPPLSTAKPTPPSASATPAPIG 272
Score = 35.8 bits (83), Expect = 0.085
Identities = 23/132 (17%), Positives = 31/132 (23%), Gaps = 26/132 (19%)
Query: 142 IPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAP 201
+P A P S PS S S P P+
Sbjct: 164 ATTNSDNSFPGEDADPASASPSDPPSSS-PGVPSFPSPPEDPSSPSDSSL-PPAPSSFQS 221
Query: 202 LQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP 261
S ++ T P P + QQ P + P
Sbjct: 222 DTPPPSPESPTNP----------------------SPPPGPAAPPPPPVQQVPPLSTAKP 259
Query: 262 TTEPPSYASTMQ 273
T PPS ++T
Sbjct: 260 T--PPSASATPA 269
Score = 35.0 bits (81), Expect = 0.15
Identities = 32/161 (19%), Positives = 47/161 (29%), Gaps = 36/161 (22%)
Query: 140 DYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRP 199
D PG L + S + + + +S P S SP P+ P
Sbjct: 147 DPNPGPPL---DEEDEDADVATTNSDNSFPGEDADPASAS-----PSDPPSSSPGVPSFP 198
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP 259
+P + SS + P P S Q+ P SP S ++ PP P
Sbjct: 199 SPPEDPSSPSDSSLP--------PAP---SSFQSDTPPPSPESPTNP-------SPPPGP 240
Query: 260 VPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHP 300
PP S + + + TPA
Sbjct: 241 AAPPPPPVQQVPPL----------STAKPTPPSASATPAPI 271
Score = 32.3 bits (74), Expect = 0.97
Identities = 18/99 (18%), Positives = 28/99 (28%)
Query: 236 APTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTT 295
P S S S P P P +P S + + A S + + P S + T
Sbjct: 175 EDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNP 234
Query: 296 TPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTS 334
+P P + + S + P
Sbjct: 235 SPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
>gnl|CDD|118131 pfam09595, Metaviral_G, Metaviral_G glycoprotein. This is a viral
attachment glycoprotein from region G of metaviruses. It
is high in serine and threonine suggesting it is highly
glycosylated.
Length = 183
Score = 38.5 bits (89), Expect = 0.007
Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 34/203 (16%)
Query: 134 NLYFVMDYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSP 193
N+Y +++Y + ++PP S +P +P+S + ST S +
Sbjct: 12 NIYLIINYATQKNTSESEHHTSSPPTESSKKTPTTPTDNPDTNPNSQ-HPTQQSTESSTL 70
Query: 194 IPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSS-IQQQQQ 252
T + L+ T+P STP QT T+PPS S + Q
Sbjct: 71 PAATSESHLE--------TEPT-------STPDTTNRQQTVDRHTTPPSSSRTQTTQAVH 115
Query: 253 KPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSR 312
+ + T+ P ST TTTT ++ + +
Sbjct: 116 EKKNTRTTSRTQTPPTTST-----------------AAVQTTTTTNTSSTGKEPTTTSVQ 158
Query: 313 SESPASASSTESRTPPLPPTTSS 335
S A+ S E + P +++S
Sbjct: 159 PRSSATTQSHEETSQANPQSSAS 181
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 39.8 bits (93), Expect = 0.007
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILID-RDGHIKLTDFGLCTGFR 673
++ A++ +H G +HRD+KP NI+ G K+ D G R
Sbjct: 263 QILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLR 307
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 39.3 bits (92), Expect = 0.007
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 52/145 (35%)
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR 689
++ C + +HK G IH+DI N +ID + +K+TD L R Y+ GD+
Sbjct: 125 QIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALS---RDLFPMDYH-CLGDNE- 179
Query: 690 QDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT 749
N P+K ++A E L+
Sbjct: 180 ----------------------NRPVK-----------------------WMALESLVNK 194
Query: 750 GYTQLCDWWSVGVILYEM--LVGSP 772
Y+ D WS GV+L+E+ L +P
Sbjct: 195 EYSSASDVWSFGVLLWELMTLGQTP 219
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 39.5 bits (92), Expect = 0.007
Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 51/185 (27%)
Query: 595 NNLYFV---MDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
N L+ V M Y DL+ G+ E +A L A++ +H MG++HR +K
Sbjct: 72 NELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLK-ALDYIHHMGYVHRSVKAS 130
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
+ILI DG + L +G R S GQ R +
Sbjct: 131 HILISVDGKVYL------SGLRSNL-----------------------SMINHGQRLRVV 161
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT--GYTQLCDWWSVGVILYEMLV 769
+ K +S+ P +++PEVL + GY D +SVG+ E+
Sbjct: 162 HDFPK---------------YSVKVLP-WLSPEVLQQNLQGYDAKSDIYSVGITACELAN 205
Query: 770 GSPPF 774
G PF
Sbjct: 206 GHVPF 210
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 38.8 bits (91), Expect = 0.007
Identities = 48/215 (22%), Positives = 74/215 (34%), Gaps = 75/215 (34%)
Query: 588 VMKGSPHNNL-------------YFVMDYIPGGDLMSLLIK---KGIFEEPLARF--YIA 629
+MK H+ L Y V +Y+ G L+ L K + L IA
Sbjct: 54 IMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIA 113
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHI-KLTDFGLCTGFRWTHNSKYYQSNGDHG 688
E +ES +IHRD+ NIL+ + + K+ DFGL R + +Y
Sbjct: 114 EGMAYLES---RNYIHRDLAARNILVG-ENLVCKIADFGLA---RLIEDDEY-------- 158
Query: 689 RQDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLR 748
T + + P+K + APE
Sbjct: 159 --------------TAREGAKF---PIK-----------------------WTAPEAANY 178
Query: 749 TGYTQLCDWWSVGVILYEMLV-GSPPFLANTSAET 782
+T D WS G++L E++ G P+ T+ E
Sbjct: 179 GRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREV 213
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 39.1 bits (91), Expect = 0.008
Identities = 25/92 (27%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSP-IPPTRPAPLQAWSSRQ 209
SP+ P P +S P SP S PG P P AP R+
Sbjct: 7 RSPSPPRRPSPPRPTPPRS---PDASPEETPPSPPGPGAEPPPGRAAGPAAPR-----RR 58
Query: 210 AKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPP 241
+ P + S + P L A A T PP
Sbjct: 59 PRGCPAGVTFSSSAPPRPPLGLDDAPAATPPP 90
>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model
represents the enzyme (UbiB) which catalyzes the first
hydroxylation step in the ubiquinone biosynthetic
pathway in bacteria. It is believed that the reaction is
2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
model finds hits primarily in the proteobacteria. The
gene is also known as AarF in certain species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 437
Score = 39.2 bits (92), Expect = 0.008
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 638 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
V + GF H D+ P NI + +DG I DFG+
Sbjct: 273 VLRDGFFHADLHPGNIFVLKDGKIIALDFGI 303
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 38.9 bits (90), Expect = 0.009
Identities = 58/273 (21%), Positives = 103/273 (37%), Gaps = 74/273 (27%)
Query: 543 GVFGEVTLVRKIDTNHLYV--MKTIYKCVGAF-GEVTLVRKIDTNHLY-----VMKGSPH 594
G FGEV + ++ + V +K V AF E L++ + + L V K P
Sbjct: 17 GQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEP- 75
Query: 595 NNLYFVMDYIPGGDLMSLLIKK--GIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDN 652
+Y + +Y+ G L+ L G P + A++ + + + +IHRD++ N
Sbjct: 76 --IYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAAN 133
Query: 653 ILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCIN 712
+L+ K+ DFGL R +++Y G
Sbjct: 134 VLVSESLMCKIADFGLA---RVIEDNEYTAREG-------------------------AK 165
Query: 713 SPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GS 771
P+K + APE + +T D WS G++LYE++ G
Sbjct: 166 FPIK-----------------------WTAPEAINFGSFTIKSDVWSFGILLYEIVTYGK 202
Query: 772 PPFLANTSAETQ------YKVINWESCLHIPAE 798
P+ ++++ Y++ E+C P E
Sbjct: 203 IPYPGMSNSDVMSALQRGYRMPRMENC---PDE 232
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 38.9 bits (90), Expect = 0.009
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFE-EP----------------LARFYIAELTCAVESVH 639
LY ++Y P G+L+ L K + E +P L F A++ ++ +
Sbjct: 71 LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHF-AADVARGMDYLS 129
Query: 640 KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG 671
+ FIHRD+ NIL+ + K+ DFGL G
Sbjct: 130 QKQFIHRDLAARNILVGENYVAKIADFGLSRG 161
Score = 32.0 bits (72), Expect = 1.3
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 740 YIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPFLANTSAETQYKV 786
++A E L + YT D WS GV+L+E++ +G P+ T AE K+
Sbjct: 177 WMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKL 224
>gnl|CDD|221040 pfam11235, Med25_SD1, Mediator complex subunit 25 synapsin 1. The
overall function of the full-length Med25 is efficiently
to coordinate the transcriptional activation of RAR/RXR
(retinoic acid receptor/retinoic X receptor) in higher
eukaryotic cells. Human Med25 consists of several
domains with different binding properties, the
N-terminal, VWA, domain, this SD1 - synapsin 1 - domain
from residues 229-381, a PTOV(B) or ACID domain from
395-545, an SD2 domain from residues 564-645 and a
C-terminal NR box-containing domain (646-650) from
646-747. This The function of the SD domains is unclear.
Length = 168
Score = 37.9 bits (87), Expect = 0.009
Identities = 29/131 (22%), Positives = 42/131 (32%), Gaps = 8/131 (6%)
Query: 144 GEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIY-------SGPGSTGSPSPIPP 196
+ +P P P PP + G + SP
Sbjct: 27 PPQSLPAPQNPLPPVTPPQMQVPQNVSLHAAHDAAQKAVEAAKNQKQGLKNRFSPITPLQ 86
Query: 197 TRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQ-QQQKPQ 255
P +S A P + K +P + SL T ++P S + + QQ Q+PQ
Sbjct: 87 QAPIVGPPFSQAPAPVLPPGPPGAPKPSPASQLSLVTTVSPGSGLAPVLTQQQVPPQQPQ 146
Query: 256 PPSPVPTTEPP 266
PS VPT
Sbjct: 147 QPSMVPTPALG 157
Score = 29.8 bits (66), Expect = 4.5
Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 13/176 (7%)
Query: 156 APPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPS-PIPPTRPAPLQAWSSRQAKTQP 214
P S +QS+Q + P++ P S +P P+PP P +Q +
Sbjct: 1 LPVGGGSVPGPLQSKQPVSLPPAA--VLPPQSLPAPQNPLPPVTPPQMQVPQNVSLHAAH 58
Query: 215 VVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQA 274
++V++ QK L+ +P +P + + Q P+PV PP A
Sbjct: 59 DAAQKAVEAAKNQKQGLKNRFSPITPLQQAPIVGPPFS--QAPAPVLPPGPPGAPKPSPA 116
Query: 275 LATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLP 330
S V T+ + + A L Q++ P + S + PP P
Sbjct: 117 SQLSLVTTV--------SPGSGLAPVLTQQQVPPQQPQQPSMVPTPALGGVQPPQP 164
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 39.7 bits (92), Expect = 0.009
Identities = 30/154 (19%), Positives = 46/154 (29%), Gaps = 9/154 (5%)
Query: 143 PGEKLIPYPSPAAAPPPP--PSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA 200
L +P PPP P+ + Q P++ +P P A
Sbjct: 681 ANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAA 740
Query: 201 PLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQT---AIAPTSPPSYSSSIQQQQQKPQPP 257
P +A A + + + P + A P PP + QQ+ + P
Sbjct: 741 PGRARPPAAAPGR----ARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP 796
Query: 258 SPVPTTEPPSYASTMQALATSRVATISIPESNTT 291
P P P S +A + T I T
Sbjct: 797 QPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLT 830
Score = 38.9 bits (90), Expect = 0.013
Identities = 41/192 (21%), Positives = 60/192 (31%), Gaps = 13/192 (6%)
Query: 143 PGEKLIPYPSP-AAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR--P 199
P P+P P + P PP+ + I +P Q P P P+ P R P
Sbjct: 590 PSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPL---------RPIPMRPLRMQP 640
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP 259
P V + K T Q + +PT + IQ QPP
Sbjct: 641 ITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGA-NTMLPIQWAPGTMQPPPR 699
Query: 260 VPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASA 319
PT P A +A + + P + PA + + P +A
Sbjct: 700 APTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 759
Query: 320 SSTESRTPPLPP 331
+ +R P P
Sbjct: 760 APGRARPPAAAP 771
>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain. It is an
interaction domain identified as being similar to the
C-terminal protein kinase catalytic fold (C lobe). Its
presence at the N terminus of signalling proteins and
the absence of the active-site residues in the catalytic
and activation loops suggest that it folds independently
and is likely to be non-catalytic. The occurrence of
KIND only in metazoa implies that it has evolved from
the catalytic protein kinase domain into an interaction
domain possibly by keeping the substrate-binding
features.
Length = 176
Score = 37.8 bits (88), Expect = 0.009
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 736 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGSPP 773
P ++APEV+ YT+ D +S+G+ LYE L P
Sbjct: 66 PDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELP 103
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 38.8 bits (90), Expect = 0.011
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFEE-------PLARF----YIA-ELTCAVESVHKMGFI 644
L + +Y+ GDL L ++ I P Y+A ++ ++ + + F+
Sbjct: 92 LCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFV 151
Query: 645 HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
HRD+ N L+ IK+ DFG+ R ++ YY+ G
Sbjct: 152 HRDLATRNCLVGNHYTIKIADFGMS---RNLYSGDYYRIQG 189
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 38.5 bits (90), Expect = 0.012
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 585 HLY--VMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVES----V 638
L V K P + +Y+ G L L + + + + + S +
Sbjct: 69 RLEGVVTKSRPV---MIITEYMENGSLDKFLREN---DGKFTVGQLVGMLRGIASGMKYL 122
Query: 639 HKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+M ++HRD+ NIL++ + K++DFGL
Sbjct: 123 SEMNYVHRDLAARNILVNSNLVCKVSDFGL 152
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 38.3 bits (89), Expect = 0.012
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFE----EPLARFYIA-ELTCAVESVHKMGFIHRDIKPD 651
V+++ P GDL + L + +A E+ + +H+ FIH D+
Sbjct: 70 YLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALR 129
Query: 652 NILIDRDGHIKLTDFGL 668
N + D +K+ D+GL
Sbjct: 130 NCQLTADLSVKIGDYGL 146
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 38.4 bits (89), Expect = 0.013
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFE-----------------EPLARFYIAELTCAVESVH 639
LY ++Y P G+L+ L K + E + L +F ++ ++ +
Sbjct: 78 LYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFAS-DVATGMQYLS 136
Query: 640 KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG 671
+ FIHRD+ N+L+ + K+ DFGL G
Sbjct: 137 EKQFIHRDLAARNVLVGENLASKIADFGLSRG 168
Score = 32.3 bits (73), Expect = 1.2
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 740 YIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPFLANTSAETQYKV 786
++A E L + YT D WS GV+L+E++ +G P+ T AE K+
Sbjct: 184 WMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKL 231
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 38.2 bits (89), Expect = 0.013
Identities = 42/196 (21%), Positives = 67/196 (34%), Gaps = 69/196 (35%)
Query: 588 VMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAE----------LTCAVES 637
K P L+ +Y+ GDL L++ + A L A++
Sbjct: 77 CTKEQPTCMLF---EYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQI 133
Query: 638 VHKMG------FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQD 691
M F+HRD+ N L+ +K++DFGL R +++ YY R
Sbjct: 134 AAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGL---SRDIYSADYY-------RVQ 183
Query: 692 SMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGY 751
S S L P+ ++ PE +L +
Sbjct: 184 S-------------------KSLL-PVR--------------------WMPPEAILYGKF 203
Query: 752 TQLCDWWSVGVILYEM 767
T D WS GV+L+E+
Sbjct: 204 TTESDIWSFGVVLWEI 219
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 38.2 bits (89), Expect = 0.015
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 51/134 (38%)
Query: 642 GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQ 701
+HRD+ N+L+ H+K+TDFGL ++ E+
Sbjct: 129 RLVHRDLAARNVLVKTPQHVKITDFGLA---------------------KLLDVDEKEYH 167
Query: 702 GTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVG 761
G+ P+K ++A E +L YT D WS G
Sbjct: 168 AEGGK------VPIK-----------------------WMALESILHRIYTHKSDVWSYG 198
Query: 762 VILYEMLV-GSPPF 774
V ++E++ G+ P+
Sbjct: 199 VTVWELMTFGAKPY 212
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 38.5 bits (89), Expect = 0.015
Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 8/147 (5%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
YPS P + Q+ + + S+ G+T S +P P T P P Q S
Sbjct: 188 TYPSQVTPQSQPAT--QGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSG 245
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQ-QQQQKPQPPSPVPTTEPPS 267
+ P Q +T + Q +PP+ S+ P P + T P+
Sbjct: 246 SPQHPPSTTSQDQSTTGDGQEHTQR---RKTPPATSNRRSPHSTATPPPTTKRQETGRPT 302
Query: 268 YASTMQALATSRVATISIP--ESNTTT 292
T + S S P ++N TT
Sbjct: 303 PRPTATTQSGSSPPHSSPPGVQANPTT 329
Score = 33.9 bits (77), Expect = 0.36
Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 12/161 (7%)
Query: 195 PPTRPAPLQAWSSRQAKTQPVVIMQ----SVKSTPVQKPSLQTAIAPTSPPSYSS----- 245
P T + S + P Q S +T + + ++ P +
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS 227
Query: 246 SIQQQQQKPQPPSPVPTTEPPSYASTMQALATSR-VATISIPESNTTTTTTTPAHPLLQR 304
S + Q +P P P+ P ST ++ T T+ P
Sbjct: 228 SNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTA 287
Query: 305 KFSPGDSRSES--PASASSTESRTPPLPPTTSSSVNNKNMT 343
P R E+ P + +++ PP +S N T
Sbjct: 288 TPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPT 328
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 38.1 bits (88), Expect = 0.015
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 51/133 (38%)
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
+HRD+ N+L+ H+K+TDFGL + K Y + G
Sbjct: 130 LVHRDLAARNVLVKTPQHVKITDFGLAKLL--GADEKEYHAEGG---------------- 171
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
P+K ++A E +L YT D WS GV
Sbjct: 172 ---------KVPIK-----------------------WMALESILHRIYTHQSDVWSYGV 199
Query: 763 ILYE-MLVGSPPF 774
++E M GS P+
Sbjct: 200 TVWELMTFGSKPY 212
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 38.7 bits (90), Expect = 0.017
Identities = 22/129 (17%), Positives = 34/129 (26%), Gaps = 17/129 (13%)
Query: 153 PAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIP--PTRPAPLQAWSSRQA 210
PA PP S R Y GP + P +P P A+ + Q
Sbjct: 95 PAPPPPHARRTSEPELPRPGRRPYEG---YGGPRADDRPPGLPRQDQLPTARPAYPAYQQ 151
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYAS 270
+ +P + Q + Y+S P +P + Y +
Sbjct: 152 RPEP----GAWPRAADDYGWQQQRLGFPPRAPYAS--------PASYAPEQERDREPYDA 199
Query: 271 TMQALATSR 279
R
Sbjct: 200 GRPEYDQRR 208
Score = 33.3 bits (76), Expect = 0.79
Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 15/131 (11%)
Query: 187 STGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSS 246
S G P+P PP + R + +P ++ + PT+ P+Y +
Sbjct: 91 SAGEPAPPPPHARRTSEPELPRPGR-RPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAY 149
Query: 247 IQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKF 306
Q+ + P Y Q L P + + A + +
Sbjct: 150 QQRPEPGAWPR------AADDYGWQQQRLG--------FPPRAPYASPASYAPEQERDRE 195
Query: 307 SPGDSRSESPA 317
R E
Sbjct: 196 PYDAGRPEYDQ 206
Score = 30.6 bits (69), Expect = 4.5
Identities = 25/133 (18%), Positives = 32/133 (24%), Gaps = 12/133 (9%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
PY SPA+ P P Y P P P R +
Sbjct: 179 PYASPAS-YAPEQERDREPYDAGRPEYDQRRRDYDHPR----PDWDRPRRDRTDRPEPPP 233
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
A + P + P P + Q P P P P
Sbjct: 234 GAGHVH-------RGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGEPTARLNPKYT 286
Query: 269 ASTMQALATSRVA 281
T A++R A
Sbjct: 287 FDTFVIGASNRFA 299
>gnl|CDD|215917 pfam00433, Pkinase_C, Protein kinase C terminal domain.
Length = 47
Score = 34.1 bits (79), Expect = 0.017
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 852 RIQNSMDTSNFDPVDPDKLRNSDSMLDE--LSDELKSPFHGFFEFTFRRFF 900
++++ DTSNFDP + S D LS + F G F++
Sbjct: 1 KVKSPTDTSNFDP-EFTSEPPKLSPPDSEVLSSIDQLEFRG---FSYVNPE 47
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 37.7 bits (87), Expect = 0.018
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 597 LYFVMDYIPGGDLMSLLIKKG---IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNI 653
+Y V +Y+ G L+ L K G + P A++ + + +M +IHRD++ NI
Sbjct: 75 IYIVTEYMSKGSLLDFL-KDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANI 133
Query: 654 LIDRDGHIKLTDFGL 668
L+ K+ DFGL
Sbjct: 134 LVGDGLVCKIADFGL 148
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein
Tyrosine Kinases, Apoptosis-associated tyrosine kinases
1 and 3. Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk1 has a similar domain arrangement but
without the transmembrane segment and is thus, a
cytoplasmic (or nonreceptor) kinase. The expression of
Aatyk1 (also referred simply as Aatyk) is upregulated
during growth arrest and apoptosis in myeloid cells.
Aatyk1 has been implicated in neural differentiation,
and is a regulator of the Na-K-2Cl cotransporter, a
membrane protein involved in cell proliferation and
survival, epithelial transport, and blood pressure
control. The function of Aatyk3 is still unknown.
Length = 269
Score = 37.6 bits (87), Expect = 0.020
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 599 FVMDYIPGGDLMSLLIKKGIFE----EPLARFYIA-ELTCAVESVHKMGFIHRDIKPDNI 653
VM++ P GDL L E +P +A E+ + +HK FIH D+ N
Sbjct: 72 LVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNC 131
Query: 654 LIDRDGHIKLTDFGL 668
L+ D +K+ D+GL
Sbjct: 132 LLTADLTVKIGDYGL 146
>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain.
Phosphoinositide 3-kinase isoforms participate in a
variety of processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, and
apoptosis. These homologues may be either lipid kinases
and/or protein kinases: the former phosphorylate the
3-position in the inositol ring of inositol
phospholipids. The ataxia telangiectesia-mutated gene
produced, the targets of rapamycin (TOR) and the
DNA-dependent kinase have not been found to possess
lipid kinase activity. Some of this family possess PI-4
kinase activities.
Length = 240
Score = 37.3 bits (87), Expect = 0.021
Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 25/120 (20%)
Query: 579 RKIDTNHLYVMKGSPHNNLYFVM--DYIPGGDLMSLLIKKGIFEEPLARFYIAELT---- 632
+ + F+ P L KK F +P ++ A
Sbjct: 74 KGKVLDLRSQTATRLKKLELFLEATGKFPDPVLYDWFTKK--FPDPSEDYFEARKNFTRS 131
Query: 633 CAVESVHKMGFIH--RDIKPDNILIDRDGHIKLTDFGLCTG-------------FRWTHN 677
CA SV + +I D DNI++D+ GH+ DFG G FR T
Sbjct: 132 CAGYSV--ITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPE 189
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 38.1 bits (88), Expect = 0.022
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 51/132 (38%)
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
+HRD+ N+LI +K+ DFGL +D M S S+G
Sbjct: 261 VHRDLAARNVLICEGKLVKICDFGLA--------------------RDIMRDSNYISKG- 299
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI 763
S PL+ ++APE + YT L D WS G++
Sbjct: 300 ---------STFLPLK--------------------WMAPESIFNNLYTTLSDVWSFGIL 330
Query: 764 LYEML-VGSPPF 774
L+E+ +G P+
Sbjct: 331 LWEIFTLGGTPY 342
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 37.9 bits (89), Expect = 0.022
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLARFY-IAELTCAVESVHKMGFIHRDIKPDNILIDRD 658
VM+YI G DL K + E + E V +HK G +H D+ N ++ RD
Sbjct: 414 VMEYIGGKDL------KDVLEGNPELVRKVGE---IVAKLHKAGIVHGDLTTSNFIV-RD 463
Query: 659 GHIKLTDFGL 668
+ L DFGL
Sbjct: 464 DRLYLIDFGL 473
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 37.5 bits (87), Expect = 0.023
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFEEPLARF--YIAELTCAVESVHKMGFIHRDIKPDNIL 654
+Y + +Y+ G L+ L + + + A++ + + + +IHRD++ NIL
Sbjct: 75 IYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANIL 134
Query: 655 IDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
+ K+ DFGL R +++Y G
Sbjct: 135 VSETLCCKIADFGLA---RLIEDNEYTAREG 162
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 38.1 bits (88), Expect = 0.024
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 237 PTSPPSYSSSIQQQQ-------QKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESN 289
P PS +++ QQ + +++PP +S M+ + AT+ E+
Sbjct: 44 PQGLPSLWAAVSSQQPIKLASRDLSNDEMMMVSSDPPKSSSEMEGEMLAPQATVGRDEAT 103
Query: 290 -TTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGG 348
+ TP+ P K +P ++ +A+ TE P T S ++N+ T+G
Sbjct: 104 PSIAMENTPSPPRRTAKITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSGRQ- 162
Query: 349 GRTYKINHQSPIPERKHMTKEKEDERRECKVKNYSP 384
++ +P P R + + RE KV+ Y+P
Sbjct: 163 ----RVKSYTPKP-RGEVKSSSPTQTRE-KVRKYTP 192
Score = 31.1 bits (70), Expect = 3.6
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 25/118 (21%)
Query: 164 SASIQSRQSPTQSPSSGIYSGPGSTGSPSP---IPPTRPAPLQAWS--SRQAKTQPVVIM 218
+ SI + SP ++ +S + +P P R A +
Sbjct: 326 TISIMTGSSPAETKAS---TAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPAT 382
Query: 219 QSVKSTP--------VQKPSLQTAIAPTSP-PSYSSSIQQQQQKPQPPSPVPTTEPPS 267
V++ V KP PT+P PS ++++ P+ PSP P+ PP
Sbjct: 383 PRVRAVLTTQVHHCVVVKP---APAVPTTPSPSLTTALF-----PEAPSPSPSALPPG 432
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 37.6 bits (87), Expect = 0.026
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 733 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 770
++V T +Y +PEV+L G+ D WS+G I+YE+ G
Sbjct: 304 AIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTG 341
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 37.8 bits (88), Expect = 0.029
Identities = 37/202 (18%), Positives = 62/202 (30%), Gaps = 20/202 (9%)
Query: 148 IPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP----TRPAPLQ 203
P AA P +A+ QS + PT + G T +P P TR +
Sbjct: 63 APRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSARRLTRSEGVA 122
Query: 204 AWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP-- 261
+PVV + + Q +++ + P S + S
Sbjct: 123 RHEMEDLAGRPVVKPDADRQLR-QDILNKSSSSRRPPVSKEEGTSSKMPATALASAALFK 181
Query: 262 ---TTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPAS 318
+ A + QA SR++ + PA P P +RS
Sbjct: 182 DDEIRQEVDAARSDQAS-QSRLSR---------SRGNPPAIPPDAAPRQPMLTRSAGGRF 231
Query: 319 ASSTESRTPPLPPTTSSSVNNK 340
E+ L P + +++ K
Sbjct: 232 EGEDENLERNLQPQSPITLDKK 253
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 36.9 bits (85), Expect = 0.032
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 596 NLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAEL----TCAVESVHKMGFIHRDIKPD 651
L VM+ GG L L K ++ + + EL + ++ + F+HRD+
Sbjct: 68 ALMLVMEMASGGPLNKFLSGK---KDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAAR 124
Query: 652 NILIDRDGHIKLTDFGL 668
N+L+ + K++DFGL
Sbjct: 125 NVLLVNQHYAKISDFGL 141
>gnl|CDD|218902 pfam06121, DUF959, Domain of Unknown Function (DUF959). This
N-terminal domain is not expressed in the 'Short'
isoform of Collagen A.
Length = 202
Score = 36.7 bits (84), Expect = 0.033
Identities = 39/181 (21%), Positives = 56/181 (30%), Gaps = 43/181 (23%)
Query: 152 SPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAK 211
SP A+ P S +Q T+S ++ + PG T T PA + K
Sbjct: 33 SPTASSAAVPQASTPVQ----STESTTTHVVPRPGETE-----ESTTPASSEEPKEIVEK 83
Query: 212 TQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYS--------------------------- 244
+ V+ +V +TP P A+ S P S
Sbjct: 84 GKQNVVPGTVATTPTVTP---VAMDVASSPDLSEENIAGVGAEILNVAEGIRSFVQLWED 140
Query: 245 SSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPES---NTTTTTTTPA-HP 300
Q P P + +P +S Q T+ + IP S NTT T
Sbjct: 141 KVTNASAQTPVPDTEMPLVLATPISSLPQNDTTTLWPSSHIPSSPSANTTEAGTLSGPTK 200
Query: 301 L 301
L
Sbjct: 201 L 201
Score = 32.4 bits (73), Expect = 0.78
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 25/114 (21%)
Query: 222 KSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVA 281
K T + KP + + +S PQ +PV +TE +
Sbjct: 21 KPTWLWKPYTELSPTASSAA-----------VPQASTPVQSTESTT-------------- 55
Query: 282 TISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSS 335
T +P T +TTPA ++ ++ P + ++T + TP SS
Sbjct: 56 THVVPRPGETEESTTPASSEEPKEIVEKGKQNVVPGTVATTPTVTPVAMDVASS 109
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 37.0 bits (85), Expect = 0.035
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 597 LYFVMDYIPGGDLMSLLIKKG---IFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNI 653
+Y V +++ G L+ L K+G + P A++ + + +M +IHRD++ NI
Sbjct: 75 IYIVTEFMGKGSLLDFL-KEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANI 133
Query: 654 LIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
L+ + K+ DFGL R +++Y G
Sbjct: 134 LVGDNLVCKIADFGLA---RLIEDNEYTARQG 162
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 36.7 bits (85), Expect = 0.039
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 49/133 (36%)
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
F+HRD+ N ++D +K+ DFGL R ++ +YY + G
Sbjct: 119 FVHRDLAARNCMLDESFTVKVADFGLA---RDIYDKEYYSVHNHTG-------------- 161
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
P+K ++A E L +T D WS GV
Sbjct: 162 --------AKLPVK-----------------------WMALESLQTQKFTTKSDVWSFGV 190
Query: 763 ILYEMLV-GSPPF 774
+L+E++ G+PP+
Sbjct: 191 LLWELMTRGAPPY 203
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 37.3 bits (86), Expect = 0.040
Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 14/146 (9%)
Query: 142 IPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGS------PSPIP 195
P P P+P A P A ++ + S + S + P +P
Sbjct: 62 TPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVP 121
Query: 196 PTRPA--PLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQT------AIAPTSPPSYSSSI 247
PA P++A S Q + +V++ P Q+ +L A T+ P + +
Sbjct: 122 RQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPV 181
Query: 248 QQQQQKPQPPSPVPTTEPPSYASTMQ 273
Q P P ++A+ Q
Sbjct: 182 QAPVVAAPAPVPAIAAALAAHAAYAQ 207
Score = 31.1 bits (70), Expect = 3.3
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 7/146 (4%)
Query: 190 SPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQT-AIAPTSPPSYSSSIQ 248
S +P PAP ++ A + S + Q+ + + A + + +
Sbjct: 60 SDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVS 119
Query: 249 QQQQKPQP------PSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLL 302
+Q P P P + ++A+ ++ A ++PE TT P
Sbjct: 120 VPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRA 179
Query: 303 QRKFSPGDSRSESPASASSTESRTPP 328
+ + + PA A++ +
Sbjct: 180 PVQAPVVAAPAPVPAIAAALAAHAAY 205
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 34.7 bits (80), Expect = 0.042
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 140 DYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRP 199
D P P P A PPPS P P PG G PSP+ P P
Sbjct: 45 DPRPPVVDTPPPVSAVWVLPPPS---------EPAAPPPDPEPPVPGPAGPPSPLAPPAP 95
Query: 200 A 200
A
Sbjct: 96 A 96
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 36.8 bits (85), Expect = 0.043
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 597 LYFVMDYIPGGDLMSLLIKKGIFEEPLA------------RFYIAELTCAVESVHKMGFI 644
L + +Y+ GDL L + +E F ++ ++ + + F+
Sbjct: 94 LCMITEYMENGDLNQFLSRHE-PQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFV 152
Query: 645 HRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
HRD+ N L+ ++ IK+ DFG+ R ++ YY+ G
Sbjct: 153 HRDLATRNCLVGKNYTIKIADFGMS---RNLYSGDYYRIQG 190
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 36.5 bits (84), Expect = 0.046
Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 51/153 (33%)
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGR 689
++ +E + F+H+D+ NILI H+K++D GL R +++ YY
Sbjct: 132 QIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLS---REIYSADYY-------- 180
Query: 690 QDSMEPSEEWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRT 749
R L P+ ++ PE ++
Sbjct: 181 -------------------RVQPKSLLPIR--------------------WMPPEAIMYG 201
Query: 750 GYTQLCDWWSVGVILYEML-VGSPPFLANTSAE 781
++ D WS GV+L+E+ G P+ ++ E
Sbjct: 202 KFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQE 234
>gnl|CDD|221759 pfam12764, Gly-rich_Ago1, Glycine-rich region of argonaut. This
domain is often found at the very N-terminal of
argonaut-like proteins.
Length = 102
Score = 34.2 bits (78), Expect = 0.049
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 160 PPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQ 219
PP Y + R P Q G G G + PP P QA P
Sbjct: 3 PPEYQG--RGRGGPPQQGGRGGGGGGRG-GGSTGGPPRPSVP----ELHQATQAPYQAAV 55
Query: 220 SVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQ 252
S + P + + +S P SSS+Q QQ
Sbjct: 56 STQPAP-------SEASSSSQPPESSSLQVTQQ 81
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 36.6 bits (85), Expect = 0.052
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 50/128 (39%)
Query: 641 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWS 700
+ F+HRD+ N L+ ++ IK+ DFG+ R ++S YY+ G
Sbjct: 149 LNFVHRDLATRNCLVGKNYTIKIADFGMS---RNLYSSDYYRVQG--------------- 190
Query: 701 QGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV 760
+PL P+ ++A E +L +T D W+
Sbjct: 191 -----------RAPL-PIR--------------------WMAWESVLLGKFTTKSDVWAF 218
Query: 761 GVILYEML 768
GV L+E+L
Sbjct: 219 GVTLWEIL 226
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 36.3 bits (84), Expect = 0.056
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 39/179 (21%)
Query: 531 HLYVMKTIYKCVGVFGEVTLVRKI------DTNHLYVMKTIYK-----CVGAFG-EVTLV 578
+L + T+ + G FGEV + K L ++K + K F E+ +
Sbjct: 6 NLQEITTLGR--GEFGEV-FLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMF 62
Query: 579 RKIDTNHLYVMK-------GSPHNNLYFVMDYIPGGDLMS-LLIKKGIFE----EPL--- 623
RK+ +H V++ PH Y +++Y GDL L K E PL
Sbjct: 63 RKL--SHKNVVRLLGLCREAEPH---YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTK 117
Query: 624 ARFYIAELTC-AVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYY 681
+ + ++ + F+HRD+ N L+ +K++ L + +NS+YY
Sbjct: 118 QKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLS---KDVYNSEYY 173
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 37.0 bits (85), Expect = 0.057
Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 34/219 (15%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQ-SPSSGIYSGPGSTGS------PSPIPPTRPAPLQ 203
P + PP P + ++ S PG T P P +P+ +
Sbjct: 514 PEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIP 573
Query: 204 AWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPS----YSSSIQQQQQKPQ---- 255
S + + + + P + ++A PT P S I + ++P+
Sbjct: 574 TLSKKPEFPKDPKHPKDPEE-PKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKS 632
Query: 256 PPSPVPTTEP--PSYASTMQALATSRVATISIP----------------ESNTTTTTTTP 297
P P P P P + + + + P + + T T
Sbjct: 633 PKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTT 692
Query: 298 AHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSS 336
+ ++ E+P + +T PP P
Sbjct: 693 VVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEF 731
Score = 34.3 bits (78), Expect = 0.33
Identities = 44/212 (20%), Positives = 65/212 (30%), Gaps = 28/212 (13%)
Query: 142 IPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPI--PPTRP 199
IP P + PPPP Q SP + I P SP P P +
Sbjct: 620 IPKSPKRPESPKSPKRPPPP------QRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKE 673
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKP--QPP 257
+ AK+ + K+T V S ++ + T P + + + P P
Sbjct: 674 KFYDDYLDAAAKS------KETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPR 727
Query: 258 SPVPTTEPPSYASTMQALATSRVATISIPESNTT----TTTTTPAHPLLQRKFSPGDSRS 313
EP Q + + PE T T TP +L +F D +
Sbjct: 728 DEEFPFEPIGDPDAEQ---PDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHA 784
Query: 314 ES-----PASASSTESRTPPLPPTTSSSVNNK 340
E+ + S PP S+ K
Sbjct: 785 ETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKK 816
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 36.5 bits (85), Expect = 0.058
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 25/148 (16%)
Query: 205 WSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTE 264
W + +A+ + + M Q + + + S P +S+ P P +PV TT
Sbjct: 133 WQNHKAQQEEITTMAD------QSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTP 186
Query: 265 PPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTES 324
S T VAT P + + D+ + +A +T
Sbjct: 187 TNS--------QTPAVATAPAPAVDPQQNAVVAPSQ------ANVDTAATPAPAAPATPD 232
Query: 325 RTPPLP-----PTTSSSVNNKNMTNGTG 347
PLP +T ++ N + N T
Sbjct: 233 GAAPLPTDQAGVSTPAADPNALVMNFTA 260
Score = 33.1 bits (76), Expect = 0.72
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 164 SASIQSRQSPTQSP-SSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVK 222
S++ S+ S P + + P +T +P+ T P Q + P V Q
Sbjct: 150 SSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQT-PAVATAPAPAVDPQQNA 208
Query: 223 STPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPS 267
PS Q + + P+ ++ P P + P +
Sbjct: 209 VVA---PS-QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 36.7 bits (85), Expect = 0.059
Identities = 50/228 (21%), Positives = 67/228 (29%), Gaps = 38/228 (16%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGS--------------TGSPSPI 194
P SPA + S S S+ SP +G S S S
Sbjct: 74 PERSPALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDSIS 133
Query: 195 PPTRPAPLQAWS--SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPS----YSSSIQ 248
+ PA S A TQ + S P S T+P S
Sbjct: 134 SSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGF 193
Query: 249 QQ------QQKPQPPS---PVPTTEPPSYASTMQALATS-----RVATISIPESNTTTTT 294
Q Q +P + P+P + + QA +S I P S
Sbjct: 194 QLPAPKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAPDD 253
Query: 295 TTPAHPLLQRKFSPGDSRSESPAS----ASSTESRTPPLPPTTSSSVN 338
+TP L E+ A S+ S T +P TSSSV+
Sbjct: 254 STPLDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVD 301
>gnl|CDD|227558 COG5233, GRH1, Peripheral Golgi membrane protein [Intracellular
trafficking and secretion].
Length = 417
Score = 36.6 bits (84), Expect = 0.060
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 8/124 (6%)
Query: 224 TPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQA------LAT 277
Q T+ + Q +Q+ + +P +P ++ S A L
Sbjct: 283 LAGVGQKPQLQKLGTTKRTEDPESHQVEQRGVEENFLPIPKPDTHRSEFAAKNFLSSLPL 342
Query: 278 SRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSV 337
S S +S T TT H + +S SS E PL P S S
Sbjct: 343 SFYGKKSEHKSGTQRAVTTSYHEENGECPLCFKHEEKDRSSESSGE--YTPLAPPPSLSS 400
Query: 338 NNKN 341
+ +
Sbjct: 401 ISSS 404
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 36.0 bits (82), Expect = 0.063
Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 25/184 (13%)
Query: 178 SSGIYSGPGSTGSPSPIPPTRPA----PLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQT 233
SS +++ P+P P P PL +S ++A +++ S +Q+PS Q+
Sbjct: 22 SSSLFTKCPQATIPAPAAPCPPDADVDPLDKYSVKEAGRYYQSRLKA-NSACMQRPSGQS 80
Query: 234 AIAPTSPPSYSSSIQQQQQKPQPPSPVPTTE--------PPSYASTMQALATSRVATISI 285
+AP+ ++ P +P P PP+ A T A
Sbjct: 81 PLAPSPA---CAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPA 137
Query: 286 PESNTTTTTTTPAHPLLQRKFSPGDSRS---------ESPASASSTESRTPPLPPTTSSS 336
P +T PA PL K +P + PA++ T P P
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPR 197
Query: 337 VNNK 340
+ +K
Sbjct: 198 IPDK 201
Score = 32.1 bits (72), Expect = 1.0
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 151 PSPAAAPPP------PPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQA 204
P+PA A PP PP +R +P PS+ +P P P +P L
Sbjct: 110 PAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLH- 168
Query: 205 WSSRQAKTQPVVIMQSVKSTPVQKPSLQTAI 235
+ P ++++ P P L+ I
Sbjct: 169 -NQLPPPDYPAASCPTIETAPAASPVLEPRI 198
Score = 31.8 bits (71), Expect = 1.6
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P+PA P + + ++ P + + P P+ P RPAP S+R
Sbjct: 89 AAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPA---PARPAPACPPSTR 145
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
Q P + + K P KP P PP Y ++ + SPV P
Sbjct: 146 QCPPAPP--LPTPKPAPAAKPIFLHNQLP--PPDYPAASCPTIETAPAASPVLEPRIP 199
>gnl|CDD|185176 PRK15273, PRK15273, putative fimbrial outer membrane usher protein
SteB; Provisional.
Length = 881
Score = 36.7 bits (84), Expect = 0.067
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 265 PPSYASTMQALATSRVATISIPESNTTT----TTTTPAHPLLQRKFSPGDSRSESPASAS 320
PP++ T + LA + + + E T ++ PA PL+Q PA+
Sbjct: 805 PPTF--TPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEH----TQTDGQPAAPV 858
Query: 321 STESRTPPLPPTTSSSVNNKNM 342
+T ++TPP+P + +VN K+M
Sbjct: 859 ATTTQTPPIPLADNHAVNRKDM 880
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 36.2 bits (83), Expect = 0.067
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 51/132 (38%)
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
IHRD+ NIL+ + +K+ DFGL R + Y GD
Sbjct: 201 IHRDLAARNILLSENNVVKICDFGLA---RDIYKDPDYVRKGD----------------- 240
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI 763
PLK ++APE + YT D WS GV+
Sbjct: 241 -------ARLPLK-----------------------WMAPETIFDRVYTIQSDVWSFGVL 270
Query: 764 LYEML-VGSPPF 774
L+E+ +G+ P+
Sbjct: 271 LWEIFSLGASPY 282
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 36.1 bits (83), Expect = 0.068
Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 68/202 (33%)
Query: 597 LYFVMDYIPGGDLMSLLIKKG----IFEE-------PLARFYIAELTCAVES----VHKM 641
L V +Y+ GDL L G I L + + + S + +
Sbjct: 82 LLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL 141
Query: 642 GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQ 701
F+HRD+ N L+ + +K+ DFG+ R +++ YY+ G +M P
Sbjct: 142 HFVHRDLATRNCLVGQGLVVKIGDFGMS---RDIYSTDYYRVGGR-----TMLPIR---- 189
Query: 702 GTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVG 761
++ PE +L +T D WS G
Sbjct: 190 --------------------------------------WMPPESILYRKFTTESDIWSFG 211
Query: 762 VILYEMLV-GSPPF--LANTSA 780
V+L+E+ G P+ L+NT A
Sbjct: 212 VVLWEIFTYGKQPWYQLSNTEA 233
>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle.
Length = 519
Score = 36.4 bits (83), Expect = 0.068
Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 9/178 (5%)
Query: 152 SPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAK 211
SP PP A + Q+ + S +P+ T + ++
Sbjct: 65 SPQKGAPPVTPGKAGPAAAQAGEEEAKSSEEESDSEGETPTAATLTTSPAQAKPLGKNSQ 124
Query: 212 TQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYAST 271
+P ST PS + A P + S+++Q +Q+ S ++ +
Sbjct: 125 VRPA-------STVTPGPSGKGANLPCPQKAGSAAVQVGKQEDSESSSEEESDSDGPGAP 177
Query: 272 MQALATSRVATISIPESNTTTTTTTPAHPL-LQRKFSPGDSRSESPASASSTESRTPP 328
QA ++ ++ P S A P+ Q K G SES +S +E P
Sbjct: 178 AQAKSSGKLLQAR-PASGPAKGPPQKAGPVATQVKAERGKEDSESSEESSDSEEEAPA 234
>gnl|CDD|219094 pfam06583, Neogenin_C, Neogenin C-terminus. This family represents
the C-terminus of eukaryotic neogenin precursor
proteins, which contains several potential
phosphorylation sites. Neogenin is a member of the N-CAM
family of cell adhesion molecules (and therefore
contains multiple copies of pfam00047 and pfam00041) and
is closely related to the DCC tumour suppressor gene
product - these proteins may play an integral role in
regulating differentiation programmes and/or cell
migration events within many adult and embryonic
tissues.
Length = 295
Score = 36.1 bits (83), Expect = 0.073
Identities = 45/199 (22%), Positives = 66/199 (33%), Gaps = 22/199 (11%)
Query: 141 YIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA 200
+ + +IP S PP P + I + +P GI P G RP
Sbjct: 78 GMRPKMMIPMDS---QPPQPVVSAHPIHTLDNPQYP---GILPSP-RCGYLHHQFSLRPM 130
Query: 201 PLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPV 260
P + + Q Q +SV+S QT P P + S S ++ P P
Sbjct: 131 P-FSTLTVQRLYQHGDRAESVESVR------QTPEPPYLPAAQSESSNAAEEAPSRSIPT 183
Query: 261 PTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASAS 320
P A ++P S +T P+ PLL ++ S AS
Sbjct: 184 AHVRP--------THPLKSFAVPALPASMSTIEPKLPSTPLLTQQGPTLPKHSVKTASVG 235
Query: 321 STESRTPPLPPTTSSSVNN 339
+ PL P T S +
Sbjct: 236 TLGRARSPLLPVTVPSAPD 254
Score = 31.9 bits (72), Expect = 1.4
Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 14/138 (10%)
Query: 138 VMDYIPGEKLIPYPSPAAAPPPPPSYS---ASIQSRQSPTQSPSSGIYSGPG----STGS 190
V+ P L P P P Y S++ T + G +
Sbjct: 95 VVSAHPIHTLDNPQYPGILPSPRCGYLHHQFSLRPMPFSTLTVQRLYQHGDRAESVESVR 154
Query: 191 PSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQK------PSLQTAIAPTSPPSYS 244
+P PP PA Q+ SS A+ P + + P P+L +++ P S
Sbjct: 155 QTPEPPYLPAA-QSESSNAAEEAPSRSIPTAHVRPTHPLKSFAVPALPASMSTIEPKLPS 213
Query: 245 SSIQQQQQKPQPPSPVPT 262
+ + QQ P V T
Sbjct: 214 TPLLTQQGPTLPKHSVKT 231
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 36.7 bits (85), Expect = 0.073
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 288 SNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTG 347
+ TTTTTTT +RK S + A + P P + S + +G
Sbjct: 258 TTTTTTTTTFQPRTRKRKSIDDHKLSLNQAPEKFKNNTKPDDDPQSDFS---DKGSRKSG 314
Query: 348 GGRTYKINHQSPIP 361
+ +I++ S
Sbjct: 315 SLKDVRIDNISCSV 328
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 35.6 bits (82), Expect = 0.076
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 588 VMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELT-------CAVESVHK 640
V K P + V +Y+ G L + L K +F + +L ++ +
Sbjct: 74 VTKSKP---VMIVTEYMENGSLDAFLRKHD------GQFTVIQLVGMLRGIASGMKYLSD 124
Query: 641 MGFIHRDIKPDNILIDRDGHIKLTDFGL 668
MG++HRD+ NIL++ + K++DFGL
Sbjct: 125 MGYVHRDLAARNILVNSNLVCKVSDFGL 152
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 34.4 bits (79), Expect = 0.078
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 148 IPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGS-PSPIPPTRPAPLQAWS 206
I P+ AAAP P S + + SP + + + PSP+P T L A
Sbjct: 21 IGAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKVLVAVG 80
Query: 207 SRQAKTQPVVIMQSVK 222
+ + QP++I++++K
Sbjct: 81 DQVTENQPLLILEAMK 96
Score = 29.8 bits (67), Expect = 3.0
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 215 VVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTM 272
+V M+ + + Q A P P+ Q + Q P P + S M
Sbjct: 15 LVEMEEIGAPAQAAAPAQPASTPVPVPTE----ASPQVEAQAPQPAAAAGADAMPSPM 68
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 36.6 bits (84), Expect = 0.079
Identities = 41/189 (21%), Positives = 63/189 (33%), Gaps = 15/189 (7%)
Query: 144 GEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPT---RPA 200
G ++ YP A + S +Q P G GP + P PP
Sbjct: 784 GVQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQGPWAPRPPHL-PPQWDGSAG 842
Query: 201 PLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPV 260
Q S+ Q ++ + V + + +S PS+SS Q P P+
Sbjct: 843 HGQDQVSQFPHLQSETGPPRLQLSQVPQLPYSQTLVSSSAPSWSSP-----QPRAPIRPI 897
Query: 261 PTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASAS 320
PT PP ++A + S T + A Q F+P D +++P
Sbjct: 898 PTRFPPPPMPLQDSMAVGCDS------SGTACPSMPFASDYSQGAFTPLDINAQTPKRPR 951
Query: 321 STESRTPPL 329
ES P
Sbjct: 952 VEESSHGPA 960
Score = 30.8 bits (69), Expect = 4.6
Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 27/144 (18%)
Query: 188 TGSPSPIPPTRPAPLQAWSSRQAKTQPVVI-----------MQSVKSTPVQ-----KPSL 231
+ P P T P P KT PV + +STP + +PS+
Sbjct: 409 SRVPWRKPRTLPWP-------TPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSV 461
Query: 232 QTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSR--VATISIPESN 289
A +P +++ I Q + P + PPS + + I + +
Sbjct: 462 PVEPAHLTPVEHTTVILHQPPQSPPTVAIKPAPPPSRRRRGACVVYDDDIIEVIDVETTE 521
Query: 290 TTTTTTTPAHPLLQRKFSPGDSRS 313
+ T PA P RK G RS
Sbjct: 522 EEESVTQPAKP--HRKVQDGFQRS 543
Score = 30.0 bits (67), Expect = 6.8
Identities = 34/170 (20%), Positives = 49/170 (28%), Gaps = 7/170 (4%)
Query: 169 SRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQ-AWSSRQAKTQPVVIMQSVKSTPVQ 227
SR+ P + S S + R P + + S + TQP+ + +
Sbjct: 668 SRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQPISHEEQPRYEDPD 727
Query: 228 KP---SLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTM--QALATSRVAT 282
P SL AP S ++ Q Q P P P A + Q V
Sbjct: 728 DPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQEPQAQGVQV 787
Query: 283 ISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPT 332
S P HP + ++ R P LPP
Sbjct: 788 SSYP-GYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQGPWAPRPPHLPPQ 836
Score = 30.0 bits (67), Expect = 7.4
Identities = 41/200 (20%), Positives = 60/200 (30%), Gaps = 26/200 (13%)
Query: 154 AAAPPPPPSYSASIQSRQSPTQSPSSGI-YSGPGSTGSPSPIPPTRPAPLQAWSSRQAKT 212
A P PS ++ PS+G STG PP+ QA
Sbjct: 550 ATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPA 609
Query: 213 QPVVIMQSVKSTP-VQKPSL-------QTAIAPTSPPSYS----------SSIQQQQQKP 254
Q S P PS+ + T P S S IQQ+
Sbjct: 610 SGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSR 669
Query: 255 QPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSE 314
+ P+ T PS+ ++ L S A + P + ++ +P P+ + R E
Sbjct: 670 RQPATQSTPPRPSWLPSVFVLP-SVDAGRAQPSEESHLSSMSPTQPISHEE----QPRYE 724
Query: 315 SPASASSTESR--TPPLPPT 332
P P P
Sbjct: 725 DPDDPLDLSLHPDQAPPPSH 744
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 35.6 bits (82), Expect = 0.081
Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 236 APTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTT 295
A + PS + S QP + + + AT AT P +
Sbjct: 82 AEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDP-PATAAARDGP 140
Query: 296 TPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSS 336
TP + +P + RS S E TP P +
Sbjct: 141 TPDPT--AQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAG 179
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 35.9 bits (83), Expect = 0.083
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 598 YFVMDYIPGGDLMSLLIK---KGIFEEPLAR----FYIAELTCAVESVHKMGFIHRDIKP 650
+ +++ + GGDL S L + + L F ++ + + + FIHRDI
Sbjct: 85 FILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAA 144
Query: 651 DNILIDRDGH---IKLTDFGLCTGFRWTHNSKYYQSNG 685
N L+ G K+ DFG+ R + + YY+ G
Sbjct: 145 RNCLLTCKGPGRVAKIADFGMA---RDIYRASYYRKGG 179
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 35.6 bits (82), Expect = 0.083
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 48/136 (35%)
Query: 640 KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEW 699
+M ++HRD+ NIL++ + K++DFGL S++ + D+ +P+
Sbjct: 124 EMNYVHRDLAARNILVNSNLVCKVSDFGL---------SRFLE-------DDTSDPTYTS 167
Query: 700 SQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS 759
S G P++ + APE + +T D WS
Sbjct: 168 SLGG--------KIPIR-----------------------WTAPEAIAYRKFTSASDVWS 196
Query: 760 VGVILYE-MLVGSPPF 774
G++++E M G P+
Sbjct: 197 YGIVMWEVMSYGERPY 212
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 35.4 bits (82), Expect = 0.090
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 143 PGEKLIPYPSPAAAPP----PPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR 198
PG++ P PAA PP + ++++ + S + P + P P P
Sbjct: 47 PGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEP 106
Query: 199 PAPLQAWSSRQAKTQPV-VIMQSVKSTPVQKPSLQTAIAPT 238
P P + + K +P + P KP ++ APT
Sbjct: 107 PKP-KPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 36.4 bits (85), Expect = 0.093
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 119 NEWVV-KLYYSFQDKDNL-------YFVMDYIPGEKLIPYPSPAAAPPPPPSYSASIQSR 170
NEW+V ++Y + N +F DY PG P + AAA + +A+ ++
Sbjct: 7 NEWLVEEMYQQYLADPNSVDPSWREFFA-DYGPGSTAAPTAAAAAAAAAASAPAAAPAAK 65
Query: 171 QSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPS 230
+P+ + P + P+ AP A + A P + TP++ +
Sbjct: 66 APAAPAPAPPAAAAPAAPPKPAAAAAAAAAP-AAPPAAAAAAAPAAAAVEDEVTPLRGAA 124
Query: 231 LQTA 234
A
Sbjct: 125 AAVA 128
Score = 29.9 bits (68), Expect = 8.8
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 22/119 (18%)
Query: 184 GPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSY 243
GPGST +P+ A A + P P A AP +PP
Sbjct: 37 GPGSTAAPTAAAAAAAAA--------ASAPAAAPAAKAPAAPAPAPP--AAAAPAAPPKP 86
Query: 244 SSSIQQQQQKPQPPSPVPTTEPPSYASTMQ---------ALATSRVATISIPESNTTTT 293
+++ PP+ P + A + A+A + A++ +P T T+
Sbjct: 87 AAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAKNMDASLEVP---TATS 142
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 35.8 bits (82), Expect = 0.11
Identities = 30/200 (15%), Positives = 48/200 (24%), Gaps = 27/200 (13%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
S AA S +P++ + +P+ A A S
Sbjct: 137 GSDAATTS-------------STANTPAAAKVLKANAASAPNTTTGVGSAATTAAISATT 183
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYAS 270
T P Q P Q A A + S + Q VP
Sbjct: 184 ATTPTTT-QKKPRKPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVPQNTS----- 237
Query: 271 TMQALATSRVATISIPESNTTTTTTTPAHPL-----LQRKFSPGDSRSESPASASSTESR 325
LA T + N + A PL ++ G+ + + S+
Sbjct: 238 ---MLAQIPNPTPLMQLLNGVSPNNAMASPLNNMSPMRNLNQMGNQNNGGQMTPSANNGN 294
Query: 326 TPPLPPTTSSSVNNKNMTNG 345
S + +
Sbjct: 295 MNNQSRENSMNQGMTPSASM 314
Score = 29.6 bits (66), Expect = 7.3
Identities = 22/163 (13%), Positives = 45/163 (27%), Gaps = 7/163 (4%)
Query: 202 LQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQ---TAIAPTSPPSYSSSIQQQQQKPQPPS 258
+Q S + QP+ S ++ Q T + +S K S
Sbjct: 81 IQKLSKDFQQLQPLFRTVDEYSETYKEKKFQVLETLGTYNQLGNAGASASIT--KTSNGS 138
Query: 259 PVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPAS 318
T S A+T A + S P + T + + + + + P
Sbjct: 139 DAAT--TSSTANTPAAAKVLKANAASAPNTTTGVGSAATTAAISATTATTPTTTQKKPRK 196
Query: 319 ASSTESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQSPIP 361
T+ P +S + + + + + +
Sbjct: 197 PRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVPQNTSML 239
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 35.6 bits (82), Expect = 0.11
Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 17/119 (14%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
+ P++ PP TQ S + + + P
Sbjct: 153 ALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPP 212
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP 261
+ + IM S ++ + + S+++++ ++ V
Sbjct: 213 KKSN----------IMSSFFKKKTKEKKEKK-------EASESTVKEESEEESGKRDVI 254
Score = 29.4 bits (66), Expect = 9.5
Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 9/144 (6%)
Query: 188 TGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSI 247
G P P PA + ++ ++P + S + Q T+
Sbjct: 141 VGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEG-- 198
Query: 248 QQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFS 307
K + PP ++ M + + T E + +T +
Sbjct: 199 -----KTSVKAASLKRNPPKKSNIMSSFF--KKKTKEKKEKKEASESTVKEESEEESGKR 251
Query: 308 PGDSRSESPASASSTESRTPPLPP 331
ES E P
Sbjct: 252 DVILEDESAEPTGLDEDEDEDEPK 275
>gnl|CDD|219406 pfam07420, DUF1509, Protein of unknown function (DUF1509). This
family consists of several uncharacterized viral
proteins from the Marek's disease-like viruses. Members
of this family are typically around 400 residues in
length. The function of this family is unknown.
Length = 377
Score = 35.8 bits (82), Expect = 0.11
Identities = 44/182 (24%), Positives = 66/182 (36%), Gaps = 26/182 (14%)
Query: 171 QSPTQSPSSGIYSGPGSTGSPSPIP-----PTRPAPLQ----------AWSSRQAKTQPV 215
++PT +P+ G+YS S + +PIP P P P Q + S A+ +P
Sbjct: 104 ENPTFAPALGLYS---SVMTWTPIPCFAEVPVFPRPYQSSGDDDGPSTSRGSGVARVRPT 160
Query: 216 VIMQSV-KSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTM-- 272
VI V K+ P + + + PS+ Q+P P P P +
Sbjct: 161 VIQHRVDKTRPSDYENHRPRPFAMANPSWVDEPDAAAQRPPQPGPSGQNRSPRTPTLSNV 220
Query: 273 ----QALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPP 328
+AT+R S P ++T A P +P R SP E P
Sbjct: 221 RVLDAPVATNRGEAPSPPRTDTLDPDPAIAGPSRAVNRTP-SPRPSSPPPEIDEEYNAQP 279
Query: 329 LP 330
P
Sbjct: 280 DP 281
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 35.6 bits (82), Expect = 0.11
Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 52/131 (39%)
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
IHRD+ NIL+ + +K+ DFGL R + Y GD
Sbjct: 195 IHRDLAARNILLSENNVVKICDFGLA---RDIYKDPDYVRKGD----------------- 234
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI 763
PLK ++APE + YT D WS GV+
Sbjct: 235 -------ARLPLK-----------------------WMAPESIFDKVYTTQSDVWSFGVL 264
Query: 764 LYEM--LVGSP 772
L+E+ L SP
Sbjct: 265 LWEIFSLGASP 275
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 35.6 bits (82), Expect = 0.12
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 5/120 (4%)
Query: 151 PSPAAAPPPPPSYSASIQSR---QSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSS 207
PS + P P S + Q T S + S P + P P + P+
Sbjct: 219 PSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEE 278
Query: 208 RQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPS 267
+ S + PSL + P +S + + P SP P + P
Sbjct: 279 ELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKSPR--DPLSPRPKPQSPP 336
Score = 34.1 bits (78), Expect = 0.31
Identities = 33/169 (19%), Positives = 53/169 (31%), Gaps = 8/169 (4%)
Query: 158 PPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVI 217
P PP + QS +S S +P+ R P + S +K+ +
Sbjct: 168 PQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTPPPGSHSKSPSKSG-IPD 226
Query: 218 MQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQ--QQQKPQPPSPVP----TTEPPSYAST 271
+ S + + KP + +S + SS + + P+ P P T E
Sbjct: 227 LPSSRDSEKTKPE-KPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEA 285
Query: 272 MQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASAS 320
+ A P + + PL SP D S P S
Sbjct: 286 SPKESEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQS 334
Score = 31.7 bits (72), Expect = 1.7
Identities = 44/221 (19%), Positives = 67/221 (30%), Gaps = 40/221 (18%)
Query: 155 AAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRP--APLQAWSSRQAKT 212
A P S S S ++ +PS + P +RP + +A RQAK
Sbjct: 30 AQLPSGLSRGNSFLSNRNSDAAPSGTDSLSGRPASRLNREPSSRPGSSHSEATIVRQAKE 89
Query: 213 QPVVIMQSVKST---------PVQKPSLQTAIA--------PTSPPSYSSSIQQQQQKP- 254
P S +++ PPS S ++ ++ P
Sbjct: 90 GERPATPPEARPDEGFVRPSLPSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPT 149
Query: 255 ----------QPPSPVPTTEPPSYASTMQALATSRVA--------TISIPESNTTTTTTT 296
+P SP +PP + L+ R + T S E T
Sbjct: 150 KATWLESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRT 209
Query: 297 PAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSV 337
P P SP S S+ +E P P +SS+
Sbjct: 210 P--PPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSM 248
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 35.2 bits (81), Expect = 0.12
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 51/145 (35%)
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
F+HRD+ N L+ + +K+ DFGL R +++ YY+++
Sbjct: 151 FVHRDLATRNCLVGENMVVKIADFGLS---RNIYSADYYKASE----------------- 190
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
+ P+ ++ PE + YT D W+ GV
Sbjct: 191 ----------NDAIPIR--------------------WMPPESIFYNRYTTESDVWAYGV 220
Query: 763 ILYEML-VGSPPFLANTSAETQYKV 786
+L+E+ G P+ E Y V
Sbjct: 221 VLWEIFSYGMQPYYGMAHEEVIYYV 245
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 35.0 bits (81), Expect = 0.12
Identities = 38/164 (23%), Positives = 56/164 (34%), Gaps = 39/164 (23%)
Query: 135 LYFVMDYIPGE-KLIPYPSPAAA---PPPPP---SYSASIQSRQ----SPTQSPSSGIYS 183
LYF+ E L+P P PP P Y +++RQ +PT+ PS+G
Sbjct: 16 LYFITHNKKEEAPLLPNHKPRTGNGLPPKPEERWRYIKELENRQIGVPTPTE-PSAG--- 71
Query: 184 GPGSTGSPSPIPP------------TRPAPLQ----AWSSRQAKTQPVVIMQSVKSTPVQ 227
G SP+ + R P Q ++ Q P +Q + Q
Sbjct: 72 --GEVNSPTQLTDEQRQLLEQMQADMRQQPTQLSEVPYNE-QTPQVPRSTVQIQQQAQQQ 128
Query: 228 KPSLQTAIAPTSPPSYSSSIQQQQQKPQP-----PSPVPTTEPP 266
+P TA P ++ Q Q P P +PV
Sbjct: 129 QPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEA 172
>gnl|CDD|223554 COG0478, COG0478, RIO-like serine/threonine protein kinase fused to
N-terminal HTH domain [Signal transduction mechanisms].
Length = 304
Score = 35.4 bits (82), Expect = 0.12
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDG 659
VM+YI G +L L + +E L + + V ++ G +H D+ NIL+ DG
Sbjct: 185 VMEYIEGVELYRLRLDVENPDEILDK-----ILEEVRKAYRRGIVHGDLSEFNILVTEDG 239
Query: 660 HIKLTDF 666
I + D+
Sbjct: 240 DIVVIDW 246
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 35.7 bits (83), Expect = 0.13
Identities = 12/75 (16%), Positives = 29/75 (38%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
+ AAAP P + + + + ++ ++ + + + P A A +R
Sbjct: 100 QLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159
Query: 209 QAKTQPVVIMQSVKS 223
+ +MQ ++S
Sbjct: 160 IERIVNDTVMQELRS 174
Score = 33.8 bits (78), Expect = 0.41
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P +PAA P + + ++ +P+ PA +
Sbjct: 66 PAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAA----PAE 121
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQ 249
+A + + + +P + A + + I++
Sbjct: 122 RAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIER 162
Score = 30.3 bits (69), Expect = 4.9
Identities = 16/121 (13%), Positives = 27/121 (22%), Gaps = 15/121 (12%)
Query: 185 PGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYS 244
P + + PP AP +P + V+ TA
Sbjct: 54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWL-------VEHAKRLTA--QREQL--- 101
Query: 245 SSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQR 304
+ P P P A+ A A + P ++
Sbjct: 102 ---VARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKA 158
Query: 305 K 305
+
Sbjct: 159 R 159
Score = 29.9 bits (68), Expect = 7.2
Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 30/133 (22%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPI-PPTRPA----P 201
L P + A A PP +A + + P + R
Sbjct: 51 LAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPA----------PWLVEHAKRLTAQREQ 100
Query: 202 LQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP 261
L A ++ A + + + + + A A + P VP
Sbjct: 101 LVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPR---------------PRVP 145
Query: 262 TTEPPSYASTMQA 274
+ A ++A
Sbjct: 146 ADAAAAVADAVKA 158
>gnl|CDD|217330 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid
protein.
Length = 226
Score = 35.0 bits (81), Expect = 0.13
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 283 ISIPESNTTTT-----TTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPT--TSS 335
P S TT+ T++P S S+S S + S + TSS
Sbjct: 105 YWAPNSMATTSYSGGFTSSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSASSRTSS 164
Query: 336 SVNNKN 341
V ++N
Sbjct: 165 WVRSQN 170
Score = 34.3 bits (79), Expect = 0.23
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 22/96 (22%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
SP PP S ++S+ S QS S S + S + SSR
Sbjct: 122 SSPVPVPPSSSSSASSVSS-----QSTQSTGLSSSSYSSSSA-------------SSR-- 161
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSS 246
T V Q+ P +LQTA T P S +SS
Sbjct: 162 -TSSWVRSQNSNLEPFMPGALQTAWV-TPPSSTASS 195
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 35.0 bits (80), Expect = 0.13
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWS 206
L+ PAAAP P P+ Q+ P Q + + P P P P +Q
Sbjct: 15 LVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQ--- 71
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTE 264
QA QP AP +PP+ +++ + + P PP+ P E
Sbjct: 72 --QAPAQP---------------------APAAPPAAGAALPEALEVPPPPAFTPNGE 106
Score = 33.1 bits (75), Expect = 0.63
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 184 GPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSY 243
PG G + +PP AP + PV Q + P+ Q PTS
Sbjct: 9 PPGLAGLVANVPPA-AAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSA--M 65
Query: 244 SSSIQQQQQKPQPPSPVPTTEPPSYASTMQAL 275
+ + QQ P P P P + A+ +AL
Sbjct: 66 TPHVVQQ----APAQPAPAAPPAAGAALPEAL 93
Score = 31.2 bits (70), Expect = 2.3
Identities = 22/100 (22%), Positives = 30/100 (30%), Gaps = 12/100 (12%)
Query: 149 PYPSPAAAPPPP--PSYSASIQSRQSPTQSPSSGIYSGPGSTGSP----SPIPPTRPAPL 202
P P+P P P P + Q PTQ P S P P PA
Sbjct: 27 PQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPAAPPAAG 86
Query: 203 QAWSSR------QAKTQPVVIMQSVKSTPVQKPSLQTAIA 236
A A T I+ ++ P L +++
Sbjct: 87 AALPEALEVPPPPAFTPNGEIVGTLAGNLEGDPQLAPSVS 126
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 35.4 bits (81), Expect = 0.14
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 51/132 (38%)
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
IHRD+ NIL+ + +K+ DFGL ++ + D+ R+ S
Sbjct: 196 IHRDLAARNILLSENNVVKICDFGL---------ARDIYKDPDYVRKGSAR--------- 237
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI 763
PLK ++APE + YT D WS GV+
Sbjct: 238 ---------LPLK-----------------------WMAPESIFDKVYTTQSDVWSFGVL 265
Query: 764 LYEML-VGSPPF 774
L+E+ +G+ P+
Sbjct: 266 LWEIFSLGASPY 277
>gnl|CDD|152349 pfam11914, DUF3432, Domain of unknown function (DUF3432). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 100
amino acids in length. This domain is found associated
with pfam00096. This domain has two conserved sequence
motifs: YPSPV and PSP.
Length = 100
Score = 32.8 bits (74), Expect = 0.14
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 152 SPAAAPPPPPSY-SASIQSRQSPTQ----SPSSGIYSGPGSTGSPSP-IPPTRPAPLQAW 205
+ P SY S S SP SP S Y P T PSP I T P+ +
Sbjct: 14 ISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATTYPSVSPTF 73
Query: 206 SSRQAKTQPVVIMQSVKSTPVQKP 229
++ A + P ++ + S+PV P
Sbjct: 74 QTQVATSFPSSVVTNSFSSPVTTP 97
Score = 29.7 bits (66), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 174 TQSPSSGIYSGPGSTGSPSPIPPTRPAPLQ-AWSSRQAKTQPVVIMQSVKST------PV 226
T SP+ IYS + PSPI + P+P+ ++SS + P + S S P
Sbjct: 9 TASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATTYPS 68
Query: 227 QKPSLQTAIAPTSPPSYSSSI 247
P+ QT +A + P S ++
Sbjct: 69 VSPTFQTQVATSFPSSVVTNS 89
>gnl|CDD|240167 cd05144, RIO2_C, RIO kinase family; RIO2, C-terminal catalytic
domain. The RIO kinase catalytic domain family is part
of a larger superfamily, that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase (PI3K). RIO kinases are
atypical protein serine kinases containing a kinase
catalytic signature, but otherwise show very little
sequence similarity to typical PKs. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. The RIO
catalytic domain is truncated compared to the catalytic
domains of typical PKs, with deletions of the loops
responsible for substrate binding. RIO2 is present in
archaea and eukaryotes. It contains an N-terminal winged
helix (wHTH) domain and a C-terminal RIO kinase
catalytic domain. The wHTH domain is primarily seen in
DNA-binding proteins, although some wHTH domains may be
involved in RNA recognition. RIO2 is essential for
survival and is necessary for rRNA cleavage during 40S
ribosomal subunit maturation. The biological substrates
of RIO2 are still unknown.
Length = 198
Score = 34.4 bits (80), Expect = 0.14
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDG 659
VM+YI G L + + E+P + E+ + +K G IH D+ NIL+D D
Sbjct: 109 VMEYIDG----VELYRVRVLEDP--EEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDE 162
Query: 660 HIKLTDF 666
I + D+
Sbjct: 163 KIYIIDW 169
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 35.0 bits (80), Expect = 0.16
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGL 668
+HRD+ N+L+ H+K+TDFGL
Sbjct: 130 LVHRDLAARNVLVKSPNHVKITDFGL 155
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 35.2 bits (81), Expect = 0.16
Identities = 25/127 (19%), Positives = 36/127 (28%), Gaps = 17/127 (13%)
Query: 165 ASIQSRQSPTQSPSSGIYS-------GPGSTGSPSPI--PPTRPAPLQAWSSRQAKTQPV 215
+ RQ P SP G GP + P+ P P + +
Sbjct: 378 LQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGL 437
Query: 216 VIMQSVKSTPVQKPSLQTAIAPTSPP--SYSSSIQQQ---QQKPQPPSPVPTTEPPSYAS 270
M +V++ Q A Y + Q Q PQP S +
Sbjct: 438 APMNAVRAPSRNA---QNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLA 494
Query: 271 TMQALAT 277
+ A AT
Sbjct: 495 QVLASAT 501
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 35.4 bits (81), Expect = 0.17
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 23/192 (11%)
Query: 140 DYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIP-PTR 198
D +PG P+ A P P ++ S +Q P + P P+P
Sbjct: 482 DQLPGVVQDGRPACAPVPAPAGPIVRPWEA--SLSQVPGVAF-----APVMPQPMPVEPV 534
Query: 199 PAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPS 258
P P A P++ MQ P + + P ++ + P+ PS
Sbjct: 535 PVPTVALERPVCPAPPLIAMQG----PGETSGIVRVRERWRPAPWTPN------PPRSPS 584
Query: 259 PVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPAS 318
+ + + + A ++ S+ T +P P+ SP S
Sbjct: 585 QMSVRDRLA-----RLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPFS 639
Query: 319 ASSTESRTPPLP 330
+ R +P
Sbjct: 640 QVADVMRAGGVP 651
Score = 34.6 bits (79), Expect = 0.32
Identities = 41/228 (17%), Positives = 58/228 (25%), Gaps = 36/228 (15%)
Query: 145 EKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQA 204
E L P P PP + QS + S G P P+ P PL
Sbjct: 403 EALEKASEPTYGTPRPPVEKPRPEVPQSLETATS----HGSAQVPEPPPVHDLEPGPLH- 457
Query: 205 WSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTT- 263
Q P + Q P+Q P + Q + P P P
Sbjct: 458 ---DQHSMAPCPVAQL-PPGPLQ---------DLEPGDQLPGVVQDGRPACAPVPAPAGP 504
Query: 264 -----EPPSYASTMQALATSRVATISI-PESNTTTTTTTPAHPLLQRKFSPGDSRSESPA 317
E A A + + P T P P P + P
Sbjct: 505 IVRPWEASLSQVPGVAFAPVMPQPMPVEPVPVPTVALERPVCPA------PPLIAMQGPG 558
Query: 318 SASSTES-----RTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQSPI 360
S R P P S + ++ + R +Q+ +
Sbjct: 559 ETSGIVRVRERWRPAPWTPNPPRSPSQMSVRDRLARLRAEAQPYQASV 606
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 34.7 bits (80), Expect = 0.17
Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 52/148 (35%)
Query: 640 KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEW 699
+IHRD+ N+L+ + K+ DFGL ++D E E
Sbjct: 121 AQNYIHRDLAARNVLVGENNICKVADFGLARVI----------------KEDIYEAREG- 163
Query: 700 SQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS 759
P+K + APE L ++ D WS
Sbjct: 164 -----------AKFPIK-----------------------WTAPEAALYNRFSIKSDVWS 189
Query: 760 VGVILYEMLV-GSPPFLANTSAETQYKV 786
G++L E++ G P+ T+AE +V
Sbjct: 190 FGILLTEIVTYGRMPYPGMTNAEVLQQV 217
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 33.5 bits (77), Expect = 0.18
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 229 PSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPES 288
P L+ T+PP +S+I P PP+ PP + + A PE+
Sbjct: 48 PGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPE------PEA 101
Query: 289 NTTTTTTTPAHPLLQRKF 306
T T P + F
Sbjct: 102 PAENTVTVAKDPRYAKYF 119
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 35.1 bits (81), Expect = 0.19
Identities = 31/210 (14%), Positives = 55/210 (26%), Gaps = 31/210 (14%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P + P + + S + SPS + P SPS P Q S
Sbjct: 118 KSPPASKTSTPMNTSEPLVPGHSSFSDSPSR--SASPSRKFSPSSTIQQSP---QLTPSN 172
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPT--SPPSYSSSIQQQQ--------------- 251
+ + S+ + + + SP + SS ++
Sbjct: 173 KPASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDKKDITTDEKYLETFLAEV 232
Query: 252 ---QKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSP 308
Q S PP ++ + + S + + SP
Sbjct: 233 DEEQHMITSSAGKNATPPETINSFGSSSPSFWNYSRNASDAARSL------KKRSYQLSP 286
Query: 309 GDSRSESPASASSTESRTPPLPPTTSSSVN 338
S+ AS S + P + S+
Sbjct: 287 SPVPSKQKASTSPKKGEGEPPNMSLESASE 316
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 34.9 bits (80), Expect = 0.20
Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 9/70 (12%)
Query: 151 PSPAAAPP--------PPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP-TRPAP 201
PSPA +P P + P S +P PP R AP
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441
Query: 202 LQAWSSRQAK 211
L A
Sbjct: 442 LPPSPQASAP 451
Score = 30.3 bits (68), Expect = 5.2
Identities = 24/125 (19%), Positives = 35/125 (28%), Gaps = 9/125 (7%)
Query: 199 PAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPS 258
P+P + ++ K + Q + KP P PS +S+ +QQ P S
Sbjct: 382 PSPAGSPDVKK-KAPEPDLPQPDRHPGPAKPE-APGARPAELPSPASAPTPEQQPPVARS 439
Query: 259 PVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPAS 318
P + A A V S T P + S A
Sbjct: 440 APLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRK-------QPVQASSSDAAQ 492
Query: 319 ASSTE 323
E
Sbjct: 493 TGVFE 497
>gnl|CDD|221526 pfam12316, Dsh_C, Segment polarity protein dishevelled (Dsh) C
terminal. This domain family is found in eukaryotes,
and is typically between 177 and 207 amino acids in
length. The family is found in association with
pfam00778, pfam02377, pfam00610, pfam00595. The segment
polarity gene dishevelled (dsh) is required for pattern
formation of the embryonic segments. It is involved in
the determination of body organisation through the
Wingless pathway (analogous to the Wnt-1 pathway).
Length = 202
Score = 34.2 bits (78), Expect = 0.20
Identities = 39/142 (27%), Positives = 48/142 (33%), Gaps = 26/142 (18%)
Query: 149 PYPSPAAAPPPPPSY--------SASIQSRQSPTQSPSSGIYS-------------GPGS 187
PY PA P PP+Y S S S+ S S S G S
Sbjct: 40 PYQYPAPHPYFPPAYQDPGYSYGSGSAGSQHSEGSRSSGSNRSDGERSRAADGREGGRKS 99
Query: 188 TGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPV---QKPSLQTAIAPTSPPSYS 244
GS S T + + R+A ++ S S S + AP PP Y+
Sbjct: 100 GGSGSESEHTSRSGSRRSGGRRAPSERSGPPPSEGSVRSSLSHPSSHSSYGAPGVPPPYN 159
Query: 245 SSIQQQQQKPQPPSPVPTTEPP 266
KP PPSP P PP
Sbjct: 160 PP--MLMMKPPPPSPGPPGAPP 179
>gnl|CDD|223064 PHA03375, PHA03375, hypothetical protein; Provisional.
Length = 844
Score = 35.2 bits (81), Expect = 0.20
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 80 RLIDTNHLYAMKTLRKADVLKRNQVAHVKAERDILAEADNEWVV-KLYYSFQDKD----N 134
R + + + +K + +V + K +R+ A N V K F D D N
Sbjct: 303 RTVPHLSRFCLSRFKKQVLYFNLKVRYGKNKRE---SARNGLVYRKTSVVFADSDLVWRN 359
Query: 135 LYFVM-DYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSP 193
L++V +Y + + P A PPPS + + S S SS S P PS
Sbjct: 360 LFYVYYEYSLDDNVGGRPRTARLSAPPPSAAPPVPRSGSSPSSLSSSSSSAPPPATDPSS 419
Query: 194 IPPTR 198
P R
Sbjct: 420 DPTRR 424
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 34.5 bits (79), Expect = 0.22
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 629 AELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
++ ++ + + F+HRD+ N L+ + IK+ DFG+ R + YY+ G
Sbjct: 145 LQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMS---RNLYAGDYYRIQG 198
>gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional.
Length = 365
Score = 34.7 bits (80), Expect = 0.23
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 634 AVESVHKMGFIHRDI-KPDNILIDRDGHIKLTDFGLCTGFR 673
A+ +H+ G H D+ KP N L+ DG + DF L + FR
Sbjct: 123 ALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFR 163
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 34.3 bits (78), Expect = 0.24
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGL 668
+HRD+ N+L+ H+K+TDFGL
Sbjct: 130 LVHRDLAARNVLVKSPNHVKITDFGL 155
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 34.7 bits (80), Expect = 0.25
Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 32/148 (21%)
Query: 222 KSTPVQKPSLQTAIAPTSPPS-----------------YSSSIQQQQQKPQPPSPVPTT- 263
K+ P + P + +SP + + S + P+P P
Sbjct: 646 KTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPD 705
Query: 264 --------EPPSYASTMQALATSRVATISIPESNTTTTTTTP------AHPLLQRKFSPG 309
E P AS + +S + + + P +Q +
Sbjct: 706 PYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSP 765
Query: 310 DSRSESPASASSTESRTPPLPPTTSSSV 337
S + ++S + L +S S+
Sbjct: 766 ASTTALTQTSSEVQDTELNLVLLSSGSI 793
Score = 31.2 bits (71), Expect = 3.4
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGP----GSTGSPSPIPPTRPAPLQA 204
A++ S +P P Y P + + P A
Sbjct: 674 DLDPDFELATHQSVPEAALASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNL 733
Query: 205 WSSR-QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP 259
S A + ++ + Q + + A T+ + +SS Q +
Sbjct: 734 SESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNLVLLS 789
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 34.7 bits (79), Expect = 0.27
Identities = 34/217 (15%), Positives = 61/217 (28%), Gaps = 45/217 (20%)
Query: 151 PSPAAAPP---PPPSYSASIQSRQSP---TQSPSSGIYSGPGSTGSP---SPIPPTRPAP 201
AAP + + R+SP T + + P + + P PP A
Sbjct: 487 KPERAAPEQLFKDLMLPSQMLDRKSPRTHTVNDRGQCFGDPDISTAAMFIIPKPPDSFAN 546
Query: 202 LQAW-----------------SSRQAKTQPVVIM-----QSVKSTPVQKPSLQTAIAPTS 239
+ A + Q + +V+ V T + ++ +A
Sbjct: 547 VAAAALYNSPFCMPQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRILALRD 606
Query: 240 PPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAH 299
++ Q P S PP R +P + +
Sbjct: 607 AVGPAAGTHHQPLHPSSLSASMGFHPP----------PFRHP-FPLPLTVAIPNPSLHQS 655
Query: 300 PLLQRKFSPGDSRSESPASASSTESRT-PPLP-PTTS 334
+ + +P+ + + R P LP PTTS
Sbjct: 656 EVFM-GYPFQSPHLGAPSGSPPGKDRDSPDLPRPTTS 691
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 34.5 bits (79), Expect = 0.28
Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 12/91 (13%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
P A PPPPS + S +S S PG+ P P P A S
Sbjct: 181 NIPGAIQPPPPSSLPGLPPGSSSLAPSAS---STPGNRLPRVSFNPFLPGPSPAQPSAPP 237
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPP 241
+ P P P +Q P PP
Sbjct: 238 ASIPA---------PPIPPVIQYVAPPPVPP 259
Score = 32.2 bits (73), Expect = 1.4
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 185 PGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYS 244
PG+ P P P + + A + P + V P +P P +
Sbjct: 183 PGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGP-----SPAQPSAPP 237
Query: 245 SSIQQQQQKP-QPPSPVPTTEPPS 267
+SI P P PP
Sbjct: 238 ASIPAPPIPPVIQYVAPPPVPPPQ 261
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 34.4 bits (79), Expect = 0.28
Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 8/74 (10%)
Query: 150 YPSPAAAPPPPPSYSASIQSRQSP-----TQSPS--SGIYSGPGSTGSPSPIPPTRPAPL 202
A PP Y S R Q PS +G+ G P P P
Sbjct: 47 PEDYDAPSHRPPPYGGSNGDRHGGYQPLGQQDPSLYAGLGQNGGGGLPPPPYSPRDQGSE 106
Query: 203 QAWSS-RQAKTQPV 215
+ R A+ P
Sbjct: 107 HVYEEPRDARMVPP 120
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 34.0 bits (78), Expect = 0.28
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 32/118 (27%)
Query: 588 VMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIA------ELTCAVESVHKM 641
+G P V +Y+ GDL L G P A F + ELT + + ++
Sbjct: 77 CTEGDP---PIMVFEYMEHGDLNKFLRSHG----PDAAFLKSPDSPMGELT--LSQLLQI 127
Query: 642 G--------------FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNG 685
F+HRD+ N L+ D +K+ DFG+ R + + YY+ G
Sbjct: 128 AVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMS---RDVYTTDYYRVGG 182
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 33.9 bits (78), Expect = 0.28
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 742 APEVLLRTGYTQLCDWWSVGVILYEMLV-GSPPFLANTSAET 782
APE ++ D WS G++LYEM G P+ + E
Sbjct: 172 APEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEV 213
Score = 32.8 bits (75), Expect = 0.64
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 628 IAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+AE +E + IHRD+ NIL+ D K+ DFGL
Sbjct: 113 VAEGMAYLEEQN---SIHRDLAARNILVGEDLVCKVADFGL 150
>gnl|CDD|221825 pfam12877, DUF3827, Domain of unknown function (DUF3827). This
family contains the human KIAA1549 protein which has
been found to be fused fused to BRAF gene in many cases
of pilocytic astrocytomas. The fusion is due mainly to a
tandem duplication of 2 Mb at 7q34. Although nothing is
known about the function of KIAA1549 protein, the BRAF
protein is a well characterized oncoprotein. It is a
serine/threonine protein kinase which is implicated in
MAP/ERK signalling, a critical pathway for the
regulation of cell division, differentiation and
secretion.
Length = 684
Score = 34.5 bits (79), Expect = 0.29
Identities = 33/167 (19%), Positives = 54/167 (32%), Gaps = 23/167 (13%)
Query: 124 KLYYSFQDKDNLYFVMDY--IPGEKLIPYPSPAAAPPPPPSYSASIQS--------RQSP 173
K + KD+ + + +P K P A P P S S+ S R+SP
Sbjct: 327 KQHLGQHGKDDEMIIQEPAPLPPLKKESLPIEDAEVPTPKSKSSQDGSSNKKRRRGRKSP 386
Query: 174 TQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQT 233
+ S G + S RP+ + +++Q T+ + + +
Sbjct: 387 SDGDSEG---SSVISNRSSREKSGRPSTTPSVTAQQKPTKEEGRKKPAPPSGTDEQLSSA 443
Query: 234 AI----------APTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYAS 270
+I + S IQ +P P PVP PS
Sbjct: 444 SIFEHVDRLSRPSSDPYDRSSGKIQLIAMQPMPAPPVPPRFEPSRDD 490
>gnl|CDD|227404 COG5072, ALK1, Serine/threonine kinase of the haspin family [Cell
division and chromosome partitioning].
Length = 488
Score = 34.5 bits (79), Expect = 0.29
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 586 LYVMKGSPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIH 645
L V+ LY G + +IK EE L+ F+ + K F H
Sbjct: 290 LKVVSLDETLYLYLHFKD-HGTPI--SIIKADRSEEELSFFWSCISILDILEK-KFPFEH 345
Query: 646 RDIKPDNILIDRDGHIKLTDFGLC 669
R++ DNILID +G++ L DF L
Sbjct: 346 RNLTLDNILID-EGNVTLIDFKLS 368
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 34.5 bits (79), Expect = 0.33
Identities = 51/213 (23%), Positives = 69/213 (32%), Gaps = 27/213 (12%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSG------------PGSTGSPSPIPP 196
P A + P P+ S+S S S SSG S P T SP P PP
Sbjct: 381 NTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTASPEPEPP 440
Query: 197 -TRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQ 255
T L W ++ V +SV S P K ++ S S S + K
Sbjct: 441 STNKWQLDNWLNK-VNPHKVSPAESVSSNPPIKQPMEKEGKVKS----SGSQYHPESKEP 495
Query: 256 PPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPA--HPLLQRKFSPGDSR- 312
PP + + + R S +S T P K S GD R
Sbjct: 496 PPKSSSKEKRRPRT-AQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDERT 554
Query: 313 -----SESPASASSTESRTPPLPPTTSSSVNNK 340
SE + +TPP P ++ + K
Sbjct: 555 GLRPESEPGTLPYGSSVQTPPDRPKAATKGSRK 587
Score = 31.4 bits (71), Expect = 3.0
Identities = 38/227 (16%), Positives = 66/227 (29%), Gaps = 29/227 (12%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGS--TGSPSPIPP-TRPAPLQ 203
+PY S PP P + + SP + P S + SPS I P +R
Sbjct: 564 TLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSVPPAAEKRKYKSPSKIVPKSREFIET 623
Query: 204 AWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPV--- 260
SS + + S + A T S Q K + SP+
Sbjct: 624 DSSSSDSPEDESLPPSSQSPGNTESSKESCASLRTPVCRSSVGSQNDLSKDRLLSPMRET 683
Query: 261 ----PTTEPPSYASTMQAL----------------ATSRVATISIPESNTTTTTTTPAH- 299
P + S + + A + T+ T +
Sbjct: 684 ELLSPLRDSEERYSLWVKIDLDLLSRIPGHPYKKGVPPKPAEKDSLSAPKKQTSKTASEK 743
Query: 300 --PLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTN 344
+RK + + + E ++ P++SSS ++ +
Sbjct: 744 SSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNK 790
Score = 30.7 bits (69), Expect = 4.3
Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 227 QKPSLQTAIAPTSPPSYSSSIQQQQQK--------PQPPSPVPTTEP-PSYASTMQALAT 277
+K S + + +S SS+ + ++ P P SP+ ++ P P + S +
Sbjct: 770 EKSSSCSPSSSSSHHHSSSNKESRKSSRNKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQ 829
Query: 278 SRVATISIPESNTTTTT-----TTPAHPLLQRKFSPGDSRSESPASASSTESRTP--PLP 330
++ S P S ++T + +T H + K S + E S+ T ++ P+P
Sbjct: 830 EDTSSSSGPFSASSTKSSSKSSSTSKHRKTEGKGS--STSKEHKGSSGDTPNKASSFPVP 887
Query: 331 PTTSSSVNNK 340
P ++ S +
Sbjct: 888 PLSNGSSKPR 897
Score = 29.9 bits (67), Expect = 7.6
Identities = 25/122 (20%), Positives = 35/122 (28%), Gaps = 3/122 (2%)
Query: 159 PPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIM 218
P S S ++ P+ S P S S PAP S Q ++QP
Sbjct: 78 PKNSVPQSPNNKGKPSFFGDQRGRSIPSSHQSTHT-SAPGPAPSGNISQSQKRSQPRSQW 136
Query: 219 QSVKSTPVQKPSLQTAIAPTSPPSYSSSI--QQQQQKPQPPSPVPTTEPPSYASTMQALA 276
P S Q S S+S ++ + P + P L
Sbjct: 137 TKAGHPPSTVSSSQRHGQQGSSHSHSGDHHSKEICRSKSPRDLEVNVQSPERPPDSLVLL 196
Query: 277 TS 278
S
Sbjct: 197 PS 198
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 34.3 bits (79), Expect = 0.34
Identities = 36/166 (21%), Positives = 55/166 (33%), Gaps = 41/166 (24%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
P+PAA PPP A+ + + P + PP R A A +S
Sbjct: 392 PTPAAPAAPPP---AAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGD 448
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYS---------------SSIQ----QQQ 251
+ + V VK +KP+L ++ SP S S++Q + +
Sbjct: 449 RWRAFV--AFVKG---KKPALGASLEQGSPLGVSAGLLEIGFPEGSFELSAMQDPDSRAE 503
Query: 252 QKP-------QPP-------SPVPTTEPPSYASTMQALATSRVATI 283
K +P + P PPS A A R A +
Sbjct: 504 LKALAEQFFGRPTRLRITVLAAPPGAAPPSLAEKKAAEREQRQARL 549
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein. This family of
trypanosomal proteins resemble vertebrate mucins. The
protein consists of three regions. The N and C terminii
are conserved between all members of the family, whereas
the central region is not well conserved and contains a
large number of threonine residues which can be
glycosylated. Indirect evidence suggested that these
genes might encode the core protein of parasite mucins,
glycoproteins that were proposed to be involved in the
interaction with, and invasion of, mammalian host cells.
This family contains an N-terminal signal peptide.
Length = 143
Score = 32.5 bits (73), Expect = 0.36
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 253 KPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSR 312
+ Q + TT PP+ +T T+ T + + TTTTTTT
Sbjct: 42 QSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTT------------ 89
Query: 313 SESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGG 348
E+P+ ++T P T + + + + G
Sbjct: 90 -EAPSKNTTTSE--APTTTDTRAPSSIREIDGSLGS 122
>gnl|CDD|240158 cd05119, RIO, RIO kinase family, catalytic domain. The RIO kinase
catalytic domain family is part of a larger superfamily,
that includes the catalytic domains of other kinases
such as the typical serine/threonine/tyrosine protein
kinases (PKs), aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase (PI3K).
RIO kinases are atypical protein serine kinases present
in archaea, bacteria and eukaryotes. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. RIO
kinases contain a kinase catalytic signature, but
otherwise show very little sequence similarity to
typical PKs. The RIO catalytic domain is truncated
compared to the catalytic domains of typical PKs, with
deletions of the loops responsible for substrate
binding. Most organisms contain at least two RIO
kinases, RIO1 and RIO2. A third protein, RIO3, is
present in multicellular eukaryotes. In yeast, RIO1 and
RIO2 are essential for survival. They function as
non-ribosomal factors necessary for late 18S rRNA
processing. RIO1 is also required for proper cell cycle
progression and chromosome maintenance. The biological
substrates for RIO kinases are still unknown.
Length = 187
Score = 33.2 bits (77), Expect = 0.37
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKM----GFIHRDIKPDNILI 655
VM++I G + + +K E Y ++ +E + K+ G +H D+ NIL+
Sbjct: 93 VMEFIGGDGIPAPRLKDVRLLEDPEELY-DQI---LELMRKLYREAGLVHGDLSEYNILV 148
Query: 656 DRDGHIKLTDFG 667
D DG + + D
Sbjct: 149 D-DGKVYIIDVP 159
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 33.4 bits (76), Expect = 0.41
Identities = 57/273 (20%), Positives = 94/273 (34%), Gaps = 84/273 (30%)
Query: 588 VMKGSPHNNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARF---------YIAELTCAVES 637
V KG P VM+ + GDL S L + E R AE+ +
Sbjct: 78 VSKGQP---TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAY 134
Query: 638 VHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSE 697
++ F+HRD+ N ++ D +K+ DFG+ R + + YY+ G
Sbjct: 135 LNAKKFVHRDLAARNCMVAHDFTVKIGDFGMT---RDIYETDYYRKGG------------ 179
Query: 698 EWSQGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDW 757
L P+ ++APE L +T D
Sbjct: 180 ---------------KGLLPVR--------------------WMAPESLKDGVFTTSSDM 204
Query: 758 WSVGVILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEA------QLSPEGADLILQ 811
WS GV+L+E+ + AE Y+ ++ E L + PE +++
Sbjct: 205 WSFGVVLWEI---------TSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMR 255
Query: 812 LCTGADKRLGKNASEV------KAHPFFSNVDF 838
+C + ++ E+ HP F V F
Sbjct: 256 MCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSF 288
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 34.1 bits (77), Expect = 0.42
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 19/178 (10%)
Query: 162 SYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSV 221
S S+S S S + SPSS + SPSP PP R AP+ S + + +
Sbjct: 1816 SSSSSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRR-APVDRSRSGRRRERDRPSANPF 1874
Query: 222 KSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVA 281
+ P Q+ + T+P ++ + P P+ T PS A+T+ +
Sbjct: 1875 RWAPRQRSRADHSPDGTAPGDAPLNL---EDGPGRGRPIWT---PSSATTLPSR------ 1922
Query: 282 TISIPESNTTTTTTTPAHPLLQRKFSPGD-SRSESPASASSTESRTPPL---PPTTSS 335
S PE + T T + P + SP + SR+E + E P L PP S
Sbjct: 1923 --SGPEDSVDETETEDSAPPARLAPSPLETSRAEDSEDSEYPEYSNPRLGKSPPALKS 1978
Score = 30.6 bits (68), Expect = 5.2
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 16/138 (11%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSP--------SSGIYSGPGSTGSPSPIP--- 195
L P PSP P S S + R P+ +P S +S G+ +P+
Sbjct: 1843 LSPSPSPPRRAPVDRSRSGRRRERDRPSANPFRWAPRQRSRADHSPDGTAPGDAPLNLED 1902
Query: 196 -PTRPAPLQAWSSRQAKTQPVVI--MQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQ 252
P R P+ W+ A T P SV T + + +AP+ + + + +
Sbjct: 1903 GPGRGRPI--WTPSSATTLPSRSGPEDSVDETETEDSAPPARLAPSPLETSRAEDSEDSE 1960
Query: 253 KPQPPSPVPTTEPPSYAS 270
P+ +P PP+ S
Sbjct: 1961 YPEYSNPRLGKSPPALKS 1978
Score = 30.2 bits (67), Expect = 6.4
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 149 PYPSPAAAPPPPPSY-----SASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQ 203
P P+P P PS+ S S SR S T SG + ++G+P+P P + +
Sbjct: 141 PLPAPQWRPVHGPSWWLSSSSPSGSSRGSVTSPQYSGEETSDAASGAPTPPPQSSGS--- 197
Query: 204 AWSSRQAKTQPVVIMQSVKSTPVQKP 229
++ QA + ++Q + + P P
Sbjct: 198 SYVYGQALADLMAMIQEIPAPPRSVP 223
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 33.8 bits (77), Expect = 0.42
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 51/132 (38%)
Query: 644 IHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGT 703
+HRD+ N+L+ + +K+ DFGL +D M S S+G
Sbjct: 259 VHRDLAARNVLLAQGKIVKICDFGLA--------------------RDIMHDSNYVSKG- 297
Query: 704 PGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI 763
S P++ ++APE + YT L D WS G++
Sbjct: 298 ---------STFLPVK--------------------WMAPESIFDNLYTTLSDVWSYGIL 328
Query: 764 LYEML-VGSPPF 774
L+E+ +G P+
Sbjct: 329 LWEIFSLGGTPY 340
>gnl|CDD|147051 pfam04698, MOBP_C-Myrip, Myelin-associated oligodendrocytic basic
protein (MOBP). MOBP is abundantly expressed in central
nervous system myelin, and shares several
characteristics with myelin basic protein (MBP), in
terms of regional distribution and function. This family
is the middle and C-terminal regions of MOBP which has
been shown to be essential for normal arrangement of the
radial component in central nervous system myelin. Most
member-proteins carry a FVHE-PHD type zinc-finger at
their N-terminus.
Length = 710
Score = 34.0 bits (77), Expect = 0.42
Identities = 49/219 (22%), Positives = 80/219 (36%), Gaps = 37/219 (16%)
Query: 160 PPSYSASIQSRQSPTQSPSSG---IYSGPGSTGSPSP-----------IPPTRPAPLQA- 204
PPS + + PTQ+ SS I + P S SP+P +R A QA
Sbjct: 263 PPSQALLKNPQPQPTQAQSSDQGPIAASPSSALSPNPEAMCSDSETSSAGSSREAGCQAK 322
Query: 205 --WSSRQAKTQPVVIMQ------SVKSTPVQKPSLQTAIA--PTSPPSYSSSIQQQQQKP 254
W R+A P V P Q +T+ + P + ++ ++
Sbjct: 323 LSWLQRKAPKNPAAEKMPLHGELDVNFNP-QAAGGETSDSSDPEEALHTADRRARRWRRA 381
Query: 255 QPPSPVPTTEPPSYASTMQALATSRVA------TISIPESNTTTTTTTPAHPLLQRKFSP 308
+ P E PS + ++AL T++V+ IS + + T + L R +
Sbjct: 382 RLGPEEPNKELPSPGAHLRALDTAQVSDDLSETDISNEAQDPQSLTDSTEEKLRNRLYEL 441
Query: 309 GDSRSESPASASSTESRTPPLPP-----TTSSSVNNKNM 342
SE S+ + P P + SS NN+ +
Sbjct: 442 AMKMSEKETSSGEDQESEPKAEPENQKESLSSEDNNQGV 480
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 33.7 bits (78), Expect = 0.45
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 170 RQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKST-PVQK 228
R+ PS G G G +P P A A ++ A P + +V
Sbjct: 385 RRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAA 444
Query: 229 PSLQTAIAPTSPPSYSS 245
A AP +S
Sbjct: 445 APPAPAAAPQPAVRLNS 461
Score = 29.5 bits (67), Expect = 9.9
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 5/65 (7%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQA 210
P P +A+ + + GP + + P A A ++
Sbjct: 400 GPPGGGGAPGAPAAAAAPGAAAAAPAAG-----GPAAALAAVPDAAAAAAAPPAPAAAPQ 454
Query: 211 KTQPV 215
+
Sbjct: 455 PAVRL 459
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 33.8 bits (78), Expect = 0.47
Identities = 38/250 (15%), Positives = 55/250 (22%), Gaps = 71/250 (28%)
Query: 168 QSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQ 227
+ S + S+ P SP P P AP KT+ S
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAP---------KTKQAATTPSPPPAKAS 412
Query: 228 KPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTT--------------EPPS---YAS 270
P A P+ P + P + E PS S
Sbjct: 413 PPIPVPAEPTEPSPT----------PPANAANAPPSLNLEELWQQILAKLELPSTRMLLS 462
Query: 271 TMQALA--TSRVATISIPE---------------------------------SNTTTTTT 295
L S A I++ + + T
Sbjct: 463 QQAELVSLDSNRAVIAVSPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAK 522
Query: 296 TPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKIN 355
TP P P + + + PP P T +S N
Sbjct: 523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPE 582
Query: 356 HQSPIPERKH 365
+P P +
Sbjct: 583 EPTPSPTKDS 592
Score = 31.9 bits (73), Expect = 2.0
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
+P P+ A PP PP + S + S+ P P+P
Sbjct: 535 APTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP-----ADSSPPPPIPEEPTPSPT 589
Query: 203 QAWS 206
+ S
Sbjct: 590 KDSS 593
Score = 31.5 bits (72), Expect = 2.3
Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 11/91 (12%)
Query: 152 SPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAK 211
S +A+ Q P+ + +P P PP P SS
Sbjct: 514 SGSASNTAKTPPPP-----QKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPA 568
Query: 212 TQPVVIMQSVKSTPVQKPSLQTAIAPTSPPS 242
P S+P + +PT S
Sbjct: 569 QIP------ADSSPPPPIPEEPTPSPTKDSS 593
Score = 30.7 bits (70), Expect = 4.8
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 216 VIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQ----QQKPQPPSPVPTTEPPSYAST 271
+ ++S + + PP + Q P PP P PT S +
Sbjct: 508 LNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAP 567
Query: 272 MQALATSRVATISIPESNTTTTTTTPAHPL 301
Q A S E + T + +
Sbjct: 568 AQIPADSSPPPPIPEEPTPSPTKDSSPEEI 597
Score = 29.9 bits (68), Expect = 7.8
Identities = 21/108 (19%), Positives = 30/108 (27%), Gaps = 13/108 (12%)
Query: 169 SRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQK 228
QS + S ++ SP PP PL QP P
Sbjct: 511 ESQSGSASNTAK----TPPPPQKSPPPPAPTPPLP---------QPTATAPPPTPPPPPP 557
Query: 229 PSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALA 276
+ Q + + SS + PSP + P + LA
Sbjct: 558 TATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEEIDKAAKNLA 605
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 33.4 bits (76), Expect = 0.49
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 26/157 (16%)
Query: 185 PGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYS 244
P G+ S + ++R A+ Q V+ +KP TA P +
Sbjct: 132 PVRNGNASRQTAKTQTAERPATTRPARKQAVI--------EPKKPQ-ATAKTEPKPVA-- 180
Query: 245 SSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQR 304
Q ++ +P +PV +T+ P+ ST T+ A T +PA
Sbjct: 181 ----QTPKRTEPAAPVASTKAPAATSTPAPKETATTAP---------VQTASPAQT--TA 225
Query: 305 KFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKN 341
+ G + + S S S L ++SS+ +N N
Sbjct: 226 TPAAGGKTAGNVGSLKSAPSSHYTLQLSSSSNYDNLN 262
Score = 29.9 bits (67), Expect = 7.2
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQ--SPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWS 206
P + P P + + T++P++ P T + +P+ PA A
Sbjct: 168 PQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATP 227
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQ 232
+ KT V S+KS P +LQ
Sbjct: 228 AAGGKTAGNV--GSLKSAPSSHYTLQ 251
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 33.0 bits (75), Expect = 0.50
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 53/187 (28%)
Query: 597 LYFVMDYIPGGDLMSLL-IKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
+ V +++ G L L ++G F + ++ + + IHRD+ N L+
Sbjct: 74 ICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLV 133
Query: 656 DRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCINSPL 715
+ +K++DFG+ R+ + +Y S G + P +WS
Sbjct: 134 GENQVVKVSDFGMT---RFVLDDQYTSSTG------TKFPV-KWS--------------- 168
Query: 716 KPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-GSPPF 774
+PEV + Y+ D WS GV+++E+ G P+
Sbjct: 169 --------------------------SPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPY 202
Query: 775 LANTSAE 781
+++E
Sbjct: 203 ENRSNSE 209
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein.
Members of this protein family are FHA
(forkhead-associated) domain-containing proteins that
are part of type VI secretion loci in a considerable
number of bacteria, most of which are known pathogens.
Species include Pseudomonas aeruginosa PAO1, Aeromonas
hydrophila, Yersinia pestis, Burkholderia mallei, etc
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 396
Score = 33.5 bits (77), Expect = 0.51
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 165 ASIQSRQSPTQSPSSGI---YSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSV 221
S+ Q+ S G +P P P + PL+A + + +
Sbjct: 101 VSLGDPLVSRQASESRADTSLPTAGGPPTPDPAPLAQLDPLKALDQEPLSAADLDDLSAP 160
Query: 222 KSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVA 281
P+ A +P ++ P+P P P S A + A+A +
Sbjct: 161 LFPPLD----ARLPAFAAPIDAEPTMVPPF--VPLPAPEPAPAPASQAPSSDAVALTPFL 214
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component
[Chromatin structure and dynamics].
Length = 1163
Score = 33.7 bits (77), Expect = 0.51
Identities = 54/323 (16%), Positives = 99/323 (30%), Gaps = 39/323 (12%)
Query: 160 PPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQ 219
P Y Q GP S+ P+ + R + Q
Sbjct: 192 PSGYKIEGSLPQPNGSRLHVTTPQGPLSS---PPVQSSYYVAPCNHDQRTSHPTLPSDSQ 248
Query: 220 SVKSTPVQKPSLQTAIAPTS---PPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALA 276
S P PS + + ++ + Q P Y + +L
Sbjct: 249 PEPSAPSHMPSDARGKHQVDFNQAIIFVNKVKVRFQ----------NNPEMYYDFLDSLR 298
Query: 277 TSRVATISIPESNTTTTTTTPAHPLLQRKF-----SPGDSRSESPASASSTESRTPPL-- 329
T ++ SI E T P L +F S +S A+A R PP+
Sbjct: 299 TYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANAQKPSKRLPPIGS 358
Query: 330 --PPTTSSSVNNKNMTNGTGGGRTYKINHQSPIPERKHMTKEKEDERRECKVKNYSPQAF 387
PT + N ++ R+ + ++ R + + S ++
Sbjct: 359 FSLPTAAPEQNRPSLL--WESPRSISNISRYRADLLTSFSRNFVPIRIHMPISHLSNESE 416
Query: 388 KFF--MEQHIENVIKSHK---------QRVFRRLQL-ETEMAKIGLSAEAQCQMRKMLSQ 435
FF ++Q++++ H+ Q++ + L E A +G + E + ++
Sbjct: 417 DFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVERLFAFLGSNEELIRWFKAFINY 476
Query: 436 KESNYIRLKRAKMDKSMFIKIKP 458
E L+ + D F K P
Sbjct: 477 SEPEKEPLRETRKDLEKFEKCGP 499
Score = 30.7 bits (69), Expect = 4.3
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 7/124 (5%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIP-PTRPA---PL 202
+P P P + Q SP PS +T + P P + P
Sbjct: 5 NVPVDPPHDNPGDKVMTGSLKQ--ISPKYHPSMSRDH-DVNTSLQNSEPWPDNGSARKPS 61
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT 262
+ S + P+ + + +++A +P + Q + P
Sbjct: 62 YSPESMSSYGGPMDERSGTRRYYEDVEQILSSLAGDNPDPSTDHGSASNQNMERSPPPRI 121
Query: 263 TEPP 266
P
Sbjct: 122 PYRP 125
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 263 and 318 amino acids in length.
There is a conserved SFT sequence motif. MSA-2 is a
plasma membrane glycoprotein which can be found in
Babesia bovis species.
Length = 201
Score = 32.9 bits (75), Expect = 0.53
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 118 DNEWVVKLYYSFQDKDNLYFVMDYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSP 177
D ++VK F D ++ F+ Y A P S+ S P+
Sbjct: 103 DYTFLVKFCNDFLDSES-PFMRIYKALNTYELVVKAPAEYYSPKHSSSQGTSTTRPSDGS 161
Query: 178 SSGIYSGPGSTGSPSPIPPTRPA 200
++ S P + G+P+ P +PA
Sbjct: 162 ATPNTSAPPTPGNPAA-QPEKPA 183
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 32.9 bits (75), Expect = 0.54
Identities = 23/121 (19%), Positives = 32/121 (26%), Gaps = 18/121 (14%)
Query: 194 IPPTRPAPLQAWSSRQAKTQPVVI-MQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQ 252
+ PAP Q +T I + P + L A PPSY +I
Sbjct: 110 LGEEEPAP-------QEETVADPIQALQPRPRPDVEEVL--VPAAPEPPSYEETI----- 155
Query: 253 KPQPPSPV--PTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGD 310
P+PV P + T + P +T R
Sbjct: 156 -KPGPAPVEEPVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRSRIKRTRS 214
Query: 311 S 311
S
Sbjct: 215 S 215
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 33.4 bits (76), Expect = 0.56
Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 19/120 (15%)
Query: 151 PSPAAAPPPP---------PSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAP 201
PS +P P + + + + + + + + +G+ P+P + P
Sbjct: 492 PSGGESPNPELPANNNNSNSNNNNNNGADRKEAAATTGNATTTSNGSGTSVPLPVSSEPP 551
Query: 202 LQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAI---APTSPPSYSSSIQQQQQKPQPPS 258
Q K PV+ S K +++ L + A + S +Q + QK
Sbjct: 552 -------QHKEGPVITFYSEKMKGMKELLLAEKLNSSAIKLQLTAQSQVQMKVQKHSATI 604
>gnl|CDD|218593 pfam05445, Pox_ser-thr_kin, Poxvirus serine/threonine protein
kinase.
Length = 434
Score = 33.5 bits (77), Expect = 0.58
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 17/46 (36%)
Query: 610 MSLLIKKGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
++LL K I EL F+H D+KPDNILI
Sbjct: 284 IALLYIK-----------IYELPD------CTNFLHVDLKPDNILI 312
>gnl|CDD|119428 cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase (PI4K), Type
III, beta isoform, catalytic domain; The PI4K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI4Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 4-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
to generate PtdIns(4)P, the major precursor in the
synthesis of other phosphoinositides including
PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two
isoforms of type III PI4K, alpha and beta, exist in most
eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is
a 110 kDa protein that is localized to the Golgi and the
nucleus. It is required for maintaining the structural
integrity of the Golgi complex (GC), and is a key
regulator of protein transport from the GC to the plasma
membrane. PI4KIIIbeta also functions in the genesis,
transport, and exocytosis of synaptic vesicles. The
Drosophila PI4KIIIbeta is essential for cytokinesis
during spermatogenesis.
Length = 293
Score = 32.9 bits (76), Expect = 0.58
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 652 NILIDRDGHIKLTDFG 667
NILID DGHI DFG
Sbjct: 152 NILIDNDGHIIHIDFG 167
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 33.5 bits (76), Expect = 0.59
Identities = 27/127 (21%), Positives = 34/127 (26%), Gaps = 24/127 (18%)
Query: 141 YIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA 200
YIP S PP PP R++P S G +P P +P
Sbjct: 157 YIPAGGTYILASGTYIPPNPP--------REAPAPGLPKTFTSSHGHRHRHAPKPTQQPT 208
Query: 201 PLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPV 260
+ QP VQ P+ Q P P + Q Q P
Sbjct: 209 V------QNPAQQP----------TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQT 252
Query: 261 PTTEPPS 267
S
Sbjct: 253 EQGHKRS 259
Score = 33.5 bits (76), Expect = 0.61
Identities = 17/80 (21%), Positives = 27/80 (33%)
Query: 234 AIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTT 293
A AP P +++SS + + P+ PT + P+ T+Q A
Sbjct: 180 APAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQ 239
Query: 294 TTTPAHPLLQRKFSPGDSRS 313
T + G RS
Sbjct: 240 PTPQNPAQQPPQTEQGHKRS 259
>gnl|CDD|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family,
catalytic domain; The PI3K-like catalytic domain family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. Members of the family include PI3K,
phosphoinositide 4-kinase (PI4K), PI3K-related protein
kinases (PIKKs), and TRansformation/tRanscription
domain-Associated Protein (TRRAP). PI3Ks catalyze the
transfer of the gamma-phosphoryl group from ATP to the
3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives,
while PI4K catalyze the phosphorylation of the
4-hydroxyl of PtdIns. PIKKs are protein kinases that
catalyze the phosphorylation of serine/threonine
residues, especially those that are followed by a
glutamine. PI3Ks play an important role in a variety of
fundamental cellular processes, including cell motility,
the Ras pathway, vesicle trafficking and secretion,
immune cell activation and apoptosis. PI4Ks produce
PtdIns(4)P, the major precursor to important signaling
phosphoinositides. PIKKs have diverse functions
including cell-cycle checkpoints, genome surveillance,
mRNA surveillance, and translation control.
Length = 219
Score = 32.6 bits (75), Expect = 0.60
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 632 TCAVESVHKMGFIH--RDIKPDNILIDRD-GHIKLTDFGLC 669
+ A SV G+I D PDNI+ID D G + DFG
Sbjct: 119 SLAGYSV--AGYILGIGDRHPDNIMIDLDTGKLFHIDFGFI 157
>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau;
Validated.
Length = 451
Score = 33.2 bits (76), Expect = 0.62
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 216 VIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQP-PSPVPTTEPPSYASTMQA 274
++ +KS + L S P S QQ P P PV E S +
Sbjct: 357 QLVSQIKSPAFTQLRL------ESCPPQIKSSNSQQTVSSPQPQPVAKLEQGSLLTAAS- 409
Query: 275 LATSRVATISIPESNTTTTTTTPAHPLLQ 303
++ TI + + + + LLQ
Sbjct: 410 -PQTKKETIHQEVPSPSLSKSAAIDTLLQ 437
Score = 30.9 bits (70), Expect = 3.0
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 161 PSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQS 220
P+ S + +SP + P S S + P P AK + ++ +
Sbjct: 353 PTLSQLVSQIKSPAFTQLRLESCPPQIKSSNSQQTVSSPQP-----QPVAKLEQGSLLTA 407
Query: 221 VKSTPVQKPSLQTAIAPTSPPS 242
++ Q +P+ S
Sbjct: 408 ASPQTKKETIHQEVPSPSLSKS 429
>gnl|CDD|191194 pfam05111, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 410
Score = 33.0 bits (75), Expect = 0.67
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 13/110 (11%)
Query: 159 PPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA--PLQAWSSRQAKTQPVV 216
PP S ++ R+ TQ + P S + P +P P QP
Sbjct: 86 PPHSSFPWMRPREHETQQYEYSVPVHPPPLPSQPSLQPQQPGLKPFL---------QPTA 136
Query: 217 IMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
+++ TP QK Q + P P + + + ++ P PT E P
Sbjct: 137 A-TAIQDTP-QKAGPQPPMHPGQLPLQEAELPEVHEQVAPSEKPPTPELP 184
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 33.0 bits (75), Expect = 0.68
Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 10/181 (5%)
Query: 153 PAAAPPPPPSYSASIQSRQSPTQ-SPSSGIYSGPGSTGSPS---PIPPTRPAPLQAW-SS 207
P AA S S S Q + S SS I + + S S P + L + +S
Sbjct: 167 PLAALQEKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDFFLDRFTTS 226
Query: 208 RQAKTQPVVIMQSVKSTPVQK----PSLQTAIAPTSPPSYSSSIQQQQQKPQ-PPSPVPT 262
++ T V P Q+ + + + P +S + + + + S P+
Sbjct: 227 HESSTTSCRPSDLVGHFPFQQLNYASNARLSTNPNPTLWFSQNSKSFEMNSEFSSSMTPS 286
Query: 263 TEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASST 322
PPS S+ S +IS+P N + + T + ++ + S S+SS
Sbjct: 287 ILPPSVTSSFLPTPMSYKPSISLPSDNPSIPSFTVNGVRNWEAGAFSNNSNSSNGSSSSI 346
Query: 323 E 323
E
Sbjct: 347 E 347
>gnl|CDD|216066 pfam00695, vMSA, Major surface antigen from hepadnavirus.
Length = 364
Score = 33.0 bits (75), Expect = 0.75
Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 16/127 (12%)
Query: 219 QSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATS 278
+ Q ++T + PP+ +S + ++P P PP + +
Sbjct: 41 PHILDHSPQVEGIRTTQSGIPPPA-GTSNRLGLRQPTP------ITPPLRDWHPEEDQKN 93
Query: 279 RVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVN 338
A E T + K SP + +S + P V
Sbjct: 94 STAFHQYQEERPRVRGT---YLPAGGKSSPTVD------PLLNIKSLISSIVPRIGDPVL 144
Query: 339 NKNMTNG 345
N T
Sbjct: 145 NMENTFS 151
>gnl|CDD|218825 pfam05956, APC_basic, APC basic domain. This region of the APC
family of proteins is known as the basic domain. It
contains a high proportion of positively charged amino
acids and interacts with microtubules.
Length = 359
Score = 32.8 bits (74), Expect = 0.75
Identities = 49/191 (25%), Positives = 73/191 (38%), Gaps = 27/191 (14%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR-PA-PLQAWSSR 208
PS +++ PS + PTQS PG S S +P T PA L A S
Sbjct: 80 PSSSSSQTSTPSQPLP-RPLPRPTQSAGRNSIL-PGPGNSLSQVPRTSSPARALLASSGS 137
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
Q KTQ +PV+ P +Q P PP S + + P P P + +
Sbjct: 138 QHKTQ---------KSPVRIPFMQN---PAKPPPLSKNASSR------PRPEPGSRGRAG 179
Query: 269 ASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKF---SPGDSRS--ESPASASSTE 323
+ SR+ + + + ++ + + + Q F SPG R +SA S
Sbjct: 180 MNGGPGARGSRLELVRMASAKSSGSESDRSGFRRQLTFIKESPGTLRRRRSELSSAESLA 239
Query: 324 SRTPPLPPTTS 334
S + P P S
Sbjct: 240 SSSQPASPRRS 250
Score = 32.4 bits (73), Expect = 1.1
Identities = 37/199 (18%), Positives = 58/199 (29%), Gaps = 29/199 (14%)
Query: 163 YSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVK 222
Y +R T P G P P+ P + +++++ S
Sbjct: 10 YIPGPANRSQSTT---------PSKKGPPLKTQPSDPPKSPSPGQQRSRSLHRPAKPSEL 60
Query: 223 ST--PVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEP--------PSYASTM 272
+ P + + A +P S SS Q P P PT P + +
Sbjct: 61 AELSPPPRSATPPARLAKTPSSSSSQTSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQ 120
Query: 273 QALATSRVATISIPESNTTTTTTTPAH-PLLQRKFSPGDSRSESPASASSTESRTPPLPP 331
+S + + T +P P +Q P P + + SR P P
Sbjct: 121 VPRTSSPARALLASSGSQHKTQKSPVRIPFMQNPAKP-------PPLSKNASSR--PRPE 171
Query: 332 TTSSSVNNKNMTNGTGGGR 350
S N G G R
Sbjct: 172 PGSRGRAGMNGGPGARGSR 190
>gnl|CDD|240172 cd05151, ChoK, Choline Kinase (ChoK). The ChoK subfamily is part of
a larger superfamily that includes the catalytic domains
of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC), and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. Bacterial
ChoK is also referred to as licA protein. ETNK catalyzes
the transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate and displays
negligible activity towards N-methylated derivatives of
Etn. ChoK plays an important role in cell signaling
pathways and the regulation of cell growth.
Length = 170
Score = 31.8 bits (73), Expect = 0.76
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 600 VMDYIPGGDLMSLLIKKGIFEEPLARFYIAELTCAVESVHKMG-----FIHRDIKPDNIL 654
+ ++I G +L++ E+ + ++ ++ +H H D+ P N L
Sbjct: 69 ITEFIEGSELLT--------EDFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFL 120
Query: 655 IDRDGHIKLTDF 666
+D DG + L D+
Sbjct: 121 LD-DGRLWLIDW 131
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 32.6 bits (74), Expect = 0.77
Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 51/149 (34%)
Query: 641 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWS 700
M ++HRD+ NIL++ + K++DFGL +E E +
Sbjct: 126 MNYVHRDLAARNILVNSNLECKVSDFGL---------------------SRVLEDDPEGT 164
Query: 701 QGTPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV 760
T G + P++ + APE + +T D WS
Sbjct: 165 YTTSGGKI-----PIR-----------------------WTAPEAIAYRKFTSASDVWSF 196
Query: 761 GVILYE-MLVGSPPFLANTSAETQYKVIN 788
G++++E M G P+ ++ E K IN
Sbjct: 197 GIVMWEVMSFGERPYWDMSNHEVM-KAIN 224
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 33.3 bits (76), Expect = 0.78
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGST-GSPSPIPPTRPAP 201
P + PPP P + ++P++ S + +P+P P P+
Sbjct: 64 PLPAAAESIASPEVPPPVP------PAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSL 117
Score = 32.1 bits (73), Expect = 1.9
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQ-SPTQSPSSGIYSGPGSTGSPS--PIPPTRPAPLQ-A 204
P A A P P + + SI S + P P+ + PS P P PAP +
Sbjct: 55 AAPEAAEAAPLPAA-AESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPV 113
Query: 205 WSSRQAK 211
S A
Sbjct: 114 EPSLAAN 120
>gnl|CDD|234975 PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase;
Reviewed.
Length = 239
Score = 32.5 bits (75), Expect = 0.79
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 23/82 (28%)
Query: 604 IPGG-DLMSLLIKKGIFEEP-------LARFYIAELTCAVESVHKMGFIHRDIKPDNILI 655
I G DL++LL + + EE +ARF H G H D+ NIL+
Sbjct: 128 IEGARDLVALLQEAPLSEEQWQAIGQLIARF------------HDAGVYHADLNAHNILL 175
Query: 656 DRDGHIKLTDFGLC---TGFRW 674
D DG L DF T RW
Sbjct: 176 DPDGKFWLIDFDRGELRTPTRW 197
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 32.8 bits (75), Expect = 0.79
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 224 TPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATI 283
V + + ++ T+ ++S V T + V++
Sbjct: 1 YSVTELTFSYNLSDTTLFPNATS-----------KGVKTVTSSTDTKAPTNTTYRCVSST 49
Query: 284 SIPESNTTTT--TTTPAHPLLQRKFSPGDSRSE--SPASASSTESRTPPLPPTTSSSVNN 339
++P +N T T T L FS ++R E +P+ + P P +S +V N
Sbjct: 50 TVPMTNVTVTLHDVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTPVPSSPAVGN 109
Query: 340 KNMTNGTG 347
++TNG G
Sbjct: 110 YSVTNGNG 117
>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional.
Length = 292
Score = 32.4 bits (73), Expect = 0.93
Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 41/154 (26%)
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPP------------------------SYSSS 246
+ +PVVI + PV P+L A+A + P S +
Sbjct: 46 ENEPVVIDATRVDAPVDWPALLQALADHNLPPIGVVAEGANLQGARDAGLVPVELSTPVA 105
Query: 247 IQQQQQKPQPPSPVPTTEP--PSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQR 304
Q PP+ V T P P + A A + +++ + P
Sbjct: 106 RAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAPAHNPESVP---- 161
Query: 305 KFSPGDSRSESPASASSTES-RTPPLPPTTSSSV 337
+ A+ +TE+ R PP +SS++
Sbjct: 162 ----------TRAARETTEANRPTATPPQSSSAL 185
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 32.6 bits (74), Expect = 0.95
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 271 TMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLP 330
T AT P S T T + PA SP S +PASA +S +
Sbjct: 79 TGTGKVAPPAAT---PTSAPTPTPSPPA--------SPASGMSAAPASAVEEKSPSEESA 127
Query: 331 PTTSSS 336
T+
Sbjct: 128 TATAPE 133
Score = 32.6 bits (74), Expect = 0.98
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 215 VVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQA 274
VV+M S K A PTS P+ + S P SP ++ +
Sbjct: 70 VVVMVS-KPKTGTGKVAPPAATPTSAPTPTPS--------PPASPASGMSAAPASAVEEK 120
Query: 275 LATSRVATISIPESNTTTTTT 295
+ AT + PES +T+ +
Sbjct: 121 SPSEESATATAPESPSTSVPS 141
Score = 32.2 bits (73), Expect = 1.4
Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 9/157 (5%)
Query: 149 PYPSPAAAPPPPPSY--SASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWS 206
P PSP A+P S +++++ + +S ++ P ST PS L S
Sbjct: 97 PTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESP-STSVPSSGSDAAST-LVVGS 154
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAI-APTSPPSY-SSSIQQQQQKPQPPSPVPTTE 264
R+ + ++ M + + +L+ A P Y + I + ++P+P +
Sbjct: 155 ERETTIEEIMEMGYEREEVER--ALRAAFNNPDRAVEYLLTGIPEDPEQPEPVQQTAAST 212
Query: 265 PPSYASTMQALATSRVATISIPESNTTTTTTTPAHPL 301
+ T Q + A E T +PL
Sbjct: 213 AAATTETPQHGSVFEQAAQGGTE-QPATEAAQGGNPL 248
Score = 31.8 bits (72), Expect = 1.9
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGST---GSPSPIPPTRPAP 201
P PP + +++ SP SP+SG+ + P S SPS T AP
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAP 132
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 32.5 bits (74), Expect = 0.97
Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 43/189 (22%)
Query: 150 YPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGST---GSPSPIPPTRPAPLQAWS 206
S A SA + R + + GS P PA
Sbjct: 257 LTSSAFMLNSSLPTSAP-KRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPA------ 309
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
S+ PV++P ++ A P + + + P
Sbjct: 310 -------------SLPPPPVRRPRVKHPEAGKEEPDGARN--------------AEAKEP 342
Query: 267 SYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRT 326
+ +T +TS + S ++ +T + L D SP +T R
Sbjct: 343 AQPAT----STSSKGSSSAQNKDSGSTGPGSS--LAAASSFLEDDDFGSPPLDLTTSLRH 396
Query: 327 PPLPPTTSS 335
P P TS+
Sbjct: 397 MPSPSVTSA 405
>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription
factor N terminal domain. The N terminus of the PEA3
transcription factors is implicated in transactivation
and in inhibition of DNA binding. Transactivation is
potentiated by activation of the Ras/MAP kinase and
protein kinase A signalling cascades. The N terminal
region contains conserved MAP kinase phosphorylation
sites.
Length = 336
Score = 32.5 bits (74), Expect = 1.0
Identities = 39/176 (22%), Positives = 57/176 (32%), Gaps = 27/176 (15%)
Query: 114 LAEA---DNEWVVKLYYSFQDKDNLYFVMDYIPGEKLIPYPSPAAAPPPPPSYSASIQSR 170
LAEA D+E V + S +NL F + P K+ P +P + S S +
Sbjct: 58 LAEAQVPDDEQFVPDFQS----ENLMF---HGPPTKIKREPQ---SPSKELNSSCSQKQP 107
Query: 171 QSPTQSP---SSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTP-- 225
P S Y ++G P PP+ P + QP + +
Sbjct: 108 PYPYGEKCLYSYSAYDRKPASGFKPPTPPSTPCSPVNPQETVRQLQPSGPLSNSSPPSPH 167
Query: 226 VQKPSLQTAIAPTSPPSYSSSIQQQQQK---------PQPPSPVPTTEPPSYASTM 272
P+ P S P S + + Q+ P PP P Y M
Sbjct: 168 TPLPNQSPLPPPMSSPDSSYPSEHRFQRQLSEPCLPFPPPPGRGSRDGRPPYHRQM 223
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 33.1 bits (75), Expect = 1.0
Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 23/130 (17%)
Query: 175 QSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTA 234
Q+ S+ + P +T +P AP+ Q + V P+
Sbjct: 1111 QTDSNIVKLSPLATQAPVIKSVVTQAPVV---------QV--------TISVA-PAAPVL 1152
Query: 235 IAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALA-TSRVATISIPESNTTTT 293
A SPP S++ Q +PV E P Q++ VA + P+ +
Sbjct: 1153 PAVVSPPVVSAAPAQSVATAVAMAPV--AEVPIAVPVQQSVDYMPSVAQAAAPQ--ASVN 1208
Query: 294 TTTPAHPLLQ 303
+ +++
Sbjct: 1209 DSAIQQVMME 1218
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 32.3 bits (73), Expect = 1.0
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 51/140 (36%)
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
F+HRD+ N L+ + +K+ DFG+ R +++ YY+ G
Sbjct: 141 FVHRDLATRNCLVGENLLVKIGDFGMS---RDVYSTDYYRVGG----------------- 180
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
H+++ ++ PE ++ +T D WS+GV
Sbjct: 181 -----------------------------HTMLPI-RWMPPESIMYRKFTTESDVWSLGV 210
Query: 763 ILYEMLV-GSPPFLANTSAE 781
+L+E+ G P+ ++ E
Sbjct: 211 VLWEIFTYGKQPWYQLSNNE 230
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 32.2 bits (73), Expect = 1.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 634 AVESVHKMGFIHRDIKPDNILIDRDGHIKLT 664
+ +H+ G+IHR+IK +ILI DG + L+
Sbjct: 113 GLNYLHQNGYIHRNIKASHILISGDGLVSLS 143
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 32.3 bits (73), Expect = 1.1
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 592 SPHNNLY-FVMDYIPGGDLMSLLIKKGIFE--EPLARFYI-AELTCAVESVHKMGFIHRD 647
H++L+ F++ P D+ S K + EP +I ++ +E + +H+D
Sbjct: 90 CSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKD 149
Query: 648 IKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGD 686
+ N+L+ ++K++D GL FR + + YY+ G+
Sbjct: 150 LATRNVLVFDKLNVKISDLGL---FREVYAADYYKLMGN 185
>gnl|CDD|219055 pfam06484, Ten_N, Teneurin Intracellular Region. This family is
found in the intracellular N-terminal region of the
Teneurin family of proteins. These proteins are
'pair-rule' genes and are involved in tissue patterning,
specifically probably neural patterning. The
intracellular domain is cleaved in response to
homophilic interaction of the extracellular domain, and
translocates to the nucleus. Here it probably carries
out to some transcriptional regulatory activity. The
length of this region and the conservation suggests that
there may be two structural domains here (personal obs:C
Yeats).
Length = 370
Score = 32.3 bits (73), Expect = 1.1
Identities = 46/195 (23%), Positives = 68/195 (34%), Gaps = 28/195 (14%)
Query: 157 PPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVV 216
PP S ++S Q P+ PS G S + S + + P
Sbjct: 160 PPLHCSSASSSPVEQLPSPPPSPAANECQGRLLGSSAAQAAQD------SDSEDEFGPNS 213
Query: 217 IMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPS-YASTMQAL 275
+ S + P A A SP ++ Q + PP P+ + PS +A+++ +L
Sbjct: 214 FLVKTGSGNLATP----AQASASPGNF----QNHSRLRTPPLPLSHSHSPSHHAASINSL 265
Query: 276 ATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDS---RSE----------SPASASST 322
S S P T ++T P P Q S D+ S P S
Sbjct: 266 NRSNYTQRSNPSPAPTDSSTPPEGPGSQDSVSAQDNWLLNSNVPLETRHFLFKPGGTSPL 325
Query: 323 ESRTPPLPPTTSSSV 337
T P P TSS+V
Sbjct: 326 FCTTSPGYPLTSSTV 340
>gnl|CDD|222989 PHA03111, PHA03111, Ser/Thr kinase; Provisional.
Length = 444
Score = 32.4 bits (74), Expect = 1.1
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 643 FIHRDIKPDNILI-DRDGHIKLT 664
F+H D+KPDNILI D D I +T
Sbjct: 304 FLHVDLKPDNILIFDSDEPISIT 326
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 32.7 bits (74), Expect = 1.1
Identities = 21/119 (17%), Positives = 27/119 (22%), Gaps = 13/119 (10%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P L A P + + R Q P YS P + + PP
Sbjct: 356 PSRVLAAAAKVAVIAAPQTHTGPADRQR---PQRPDGIPYSVPARS-PMTAYPPVPQFCG 411
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQ-KPQPPSPV 260
+ P S PV + P Y I P P
Sbjct: 412 DPGLV--SPYNPQSPGTSYGPEPV------GPVPPQPTNPYVMPISMANMVYPGHPQEH 462
Score = 32.3 bits (73), Expect = 1.4
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 6/108 (5%)
Query: 164 SASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKS 223
+AS+ + + + T P RP P+ V
Sbjct: 350 TASLTAPSRVLAAAAKVAVIAAPQT-HTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQ 408
Query: 224 TPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPV-PTTEPPSYAS 270
++P +P S +S + P PP P P P S A+
Sbjct: 409 FCGDPGL----VSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPISMAN 452
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing
protein 1. Members of this family share a patatin
domain, initially discovered in potato tubers. Some
members of PNPLA1 subfamily do not have the lipase
consensus sequence Gly-X-Ser-X-Gly which is essential
for hydrolase activity. This family includes PNPLA1
from Homo sapiens and Gallus gallus. Currently, there is
no literature available on the physiological role,
structure, or enzymatic activity of PNPLA1. It is
expressed in various human tissues in low mRNA levels.
Length = 382
Score = 32.6 bits (74), Expect = 1.1
Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 12/101 (11%)
Query: 161 PSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQS 220
PS S + Q + G G P+ P AP PV S
Sbjct: 291 PSLQDGQASLEESWQPHLARAPKGDGRGLHDPPLSPPLAAPESTAE--WVVESPVSSPAS 348
Query: 221 VKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVP 261
+ P T ++P S P+ S PS P
Sbjct: 349 PLESSPSLPGSLTDLSPASLPAVHS----------LPSSTP 379
>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS
box-containing transcription factors [Transcription].
Length = 412
Score = 32.3 bits (73), Expect = 1.3
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 269 ASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPP 328
A + L + V + I E+ T TTP + + ++A S S P
Sbjct: 112 AFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKSLEGKSLIQSPCSNAPSDSSEEPS 171
Query: 329 LPPTTS-SSVNNKNMTNGTGGGRTYKINHQSPIPERKH 365
+ S +N M + G P+ +
Sbjct: 172 SSASFSVDPNDNNPMGSFQHNGSPQTNFIPLQNPQTQQ 209
>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme
transport and metabolism].
Length = 269
Score = 32.0 bits (73), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 634 AVESVHK--MGFIHRDIKPDNILIDRDGHIKLTDF 666
A+E V K + H D+ P N+L+ G + L D+
Sbjct: 144 ALEEVPKDDLVPCHNDLNPGNLLLTDKGGLFLIDW 178
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 31.9 bits (72), Expect = 1.4
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 51/134 (38%)
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
F+HRD+ N L+ + +K+ DFG+ R +++ YY+ G
Sbjct: 144 FVHRDLATRNCLVGANLLVKIGDFGMS---RDVYSTDYYRVGG----------------- 183
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
H+++ ++ PE ++ +T D WS GV
Sbjct: 184 -----------------------------HTMLPI-RWMPPESIMYRKFTTESDVWSFGV 213
Query: 763 ILYEMLV-GSPPFL 775
IL+E+ G P+
Sbjct: 214 ILWEIFTYGKQPWF 227
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 31.9 bits (72), Expect = 1.4
Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 62/173 (35%)
Query: 643 FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
F+HRD+ N ++ D +K+ DFG+ R + + YY+ G
Sbjct: 140 FVHRDLAARNCMVAEDFTVKIGDFGMT---RDIYETDYYRKGG----------------- 179
Query: 703 TPGQECRCINSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV 762
L P+ +++PE L +T D WS GV
Sbjct: 180 ----------KGLLPVR--------------------WMSPESLKDGVFTTYSDVWSFGV 209
Query: 763 ILYEMLVGSPPFLANTSAETQYKVINWESCLHIPAEAQL--SPEGA-DLILQL 812
+L+E+ T AE Y+ ++ E L E L P+ D++ +L
Sbjct: 210 VLWEIA---------TLAEQPYQGMSNEQVLRFVMEGGLLDKPDNCPDMLFEL 253
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 32.2 bits (73), Expect = 1.5
Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 29/163 (17%)
Query: 202 LQAWSSRQAKT----QPVVIMQS--VKSTPV--------QKPSLQTAIAPTSPPSYSSSI 247
L+ W RQ +PV+ QS ++P Q P+ T+ P ++S
Sbjct: 327 LKNWLERQQTCPICRRPVIFDQSSPTPASPNVRNTQIATQVPNPDNTPTTTAVPGITNSS 386
Query: 248 QQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFS 307
Q + + VP +A+ Q L++ IP T P R+ S
Sbjct: 387 NQGDPQASTFNGVPNANSSGFAAHTQDLSSV------IP-----GWTMLPIPG--TRRIS 433
Query: 308 PGDSRSESPASASSTESR--TPPLPPTTSSSVNNKNMTNGTGG 348
S + A+ ++ + T P T +S NN N G G
Sbjct: 434 QSTSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAG 476
>gnl|CDD|213844 TIGR03657, IsdB, heme uptake protein IsdB. Isd proteins are
iron-regulated surface proteins found in Bacillus,
Staphylococcus and Listeria species and are responsible
for heme scavenging from hemoproteins. The IsdB protein
is only observed in Staphylococcus and consists of an
N-terminal hydrophobic signal sequence, a pair of tandem
NEAT (NEAr Transporter, pfam05031) domains which confers
the ability to bind heme and a C-terminal sortase
processing signal which targets the protein to the cell
wall. IsdB is believed to make a direct contact with
methemoglobin facilitating transfer of heme to IsdB. The
heme is then transferred to other cell wall-bound NEAT
domain proteins such as IsdA and IsdC.
Length = 644
Score = 32.2 bits (72), Expect = 1.7
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 28/183 (15%)
Query: 168 QSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKS---- 223
++ + Q S+ + P + P+ P + + Q K P V ++ S
Sbjct: 460 KTNKKEQQDNSAKKETTPATPSKPTTPPVEKESQKQDSQKDDNKQSPSVEKENDASSESG 519
Query: 224 ---TPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRV 280
TP KP+ + ++ P+ S Q KP S T + +Q A S
Sbjct: 520 KDKTPATKPAKGEVESSSTTPTKVVSTTQNVAKPTTASSETTKD------VVQTSAGSSE 573
Query: 281 ATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNK 340
A S P T H ++S + ++ E++ LP T S NK
Sbjct: 574 AKDSAPLQKANIKNTNDGH-------------TQSQNNKNTQENKAKSLPQTGEES--NK 618
Query: 341 NMT 343
+MT
Sbjct: 619 DMT 621
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 31.7 bits (72), Expect = 1.7
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 214 PVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPS 267
PVV+MQ + S A S P+ S P P SP P P S
Sbjct: 149 PVVMMQPPPPHAMPPASPPAAQPAPSAPASSPP-------PTPASPPPAKAPKS 195
Score = 30.2 bits (68), Expect = 5.3
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P P PP + A SP +P+S P +P P +P+
Sbjct: 156 PPPHAMPPASPPAAQPAPSAPASSPPPTPAS-----PPPAKAPKSSHPPLKSPM 204
Score = 30.2 bits (68), Expect = 5.3
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 19/78 (24%)
Query: 252 QKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDS 311
+P PP+PV +PP + A S A P + ++ TPA
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPA---SPPAAQPAPSAPASSPPPTPA------------- 185
Query: 312 RSESPASASSTESRTPPL 329
SP A + +S PPL
Sbjct: 186 ---SPPPAKAPKSSHPPL 200
Score = 29.4 bits (66), Expect = 9.3
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSS 207
P P+P PPP ++ P SP + + SP P P + P P +A S
Sbjct: 145 PPPAPVVMMQPPPPHAM-------PPASPPAAQPAPSAPASSPPPTPAS-PPPAKAPKS 195
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.3 bits (71), Expect = 1.7
Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 31/119 (26%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P E P P P P + P P P P P + P
Sbjct: 76 PPEPTPPKPKEKPKPEKKP---------KKPKPKPK------------PKPKPKPKVKPQ 114
Query: 203 QAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAP-----TSPPSYSSSIQQQQQKPQP 256
+KT + P Q +A + SY S +++ ++
Sbjct: 115 PKPKKPPSKTAA-----KAPAAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPR 168
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 32.2 bits (73), Expect = 1.8
Identities = 35/253 (13%), Positives = 62/253 (24%), Gaps = 29/253 (11%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
PP P S PS S P S + P P + S
Sbjct: 443 SDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVSAPASRLDDAKRPEVTATPESSGSDS 502
Query: 209 QAKTQP-----------VVIMQS-------------VKSTPVQKPSLQTAIAPTSPPSYS 244
+ VV ++ KS P + +L A++ SP +
Sbjct: 503 EGGASGREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAG 562
Query: 245 SSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRV-ATISIPESNTTTTTTTPAHPLLQ 303
S + P + T + V +++ S ++ T P L
Sbjct: 563 SPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKP 622
Query: 304 RKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTG----GGRTYKINHQSP 359
+ S +A + + + P+ + + +
Sbjct: 623 ATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKN 682
Query: 360 IPERKHMTKEKED 372
P EK
Sbjct: 683 DPYLWDTNGEKAG 695
Score = 29.9 bits (67), Expect = 7.7
Identities = 30/207 (14%), Positives = 51/207 (24%), Gaps = 39/207 (18%)
Query: 143 PGEKLIPYPSPA---AAPPPPPSYSASIQSRQSPTQSPSSGIYS--------------GP 185
P P P P+ P A+ R + +G+ S GP
Sbjct: 558 PSTAGSPRPKPSLGKFVIGTDPFAFANT-VRLTDNMRGGNGVGSSVKPKGSASSKPLTGP 616
Query: 186 GSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSS 245
GS P+ + P+ ++R A S+ V+ PS S+
Sbjct: 617 GSDLKPATLNGKTPSSSLVGAARNAGA----------SSKVKIPSGLGGFTSPISLLESA 666
Query: 246 SIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRK 305
P P T + + + +TT + K
Sbjct: 667 LEDVLTSATSTPVKKND---PYLWDTN--------GEKAGGGTESASTTDVFQNFAGLNK 715
Query: 306 FSPGDSRSESPASASSTESRTPPLPPT 332
+P + S +
Sbjct: 716 KTPVGGPFQPKPPLSRALDSASSPGGS 742
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 31.8 bits (73), Expect = 1.8
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 390 FMEQHIENVIKSHKQRVFRRLQLETEMAKIGLSAEAQCQMR-KMLSQKESNYIRLKRAKM 448
F E+ ++ R RRL+ E AKI LS+ + + L + L R +
Sbjct: 237 FKEKGGIDLRLD--PRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEF 294
Query: 449 DK 450
++
Sbjct: 295 EE 296
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 31.6 bits (72), Expect = 1.9
Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 20/175 (11%)
Query: 169 SRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQ--SVKSTPV 226
+R P P S + +T +P T P P Q + +++++ V +Q +S
Sbjct: 41 TRTRPPSRPISNEEADQPNTLNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDE 100
Query: 227 QKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIP 286
K +L P P+Y + P+ T+P + T +A+ + P
Sbjct: 101 IKITL-----PNQEPAY-------YMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSP 148
Query: 287 ESNTTTTTTTPAH------PLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSS 335
++ L +S R E + ++ T P T++
Sbjct: 149 NVPIEGINSSSEQLRVELAELAAEIYSDASHRVELAKNFMEPQAETEAQPEATTN 203
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 32.0 bits (72), Expect = 2.0
Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 143 PGEKLIPYP-SPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAP 201
P P S AA P P + + +PSS + P + +PSP P AP
Sbjct: 381 PSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAP 440
Query: 202 LQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPP 257
S +P M P S A A +PP+ + P P
Sbjct: 441 PAPPRSGIP-PRPAPRMPEASPVPGAPDS--VASASDAPPTLGDPSDTAEHTPSGP 493
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 31.5 bits (71), Expect = 2.0
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 216 VIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQAL 275
VI + ++ PS AP S P S+ ++ Q KP +P P+T+ + T A
Sbjct: 20 VITTTTQAANATTPSSTKVEAPQSTPP-STKVEAPQSKPNATTP-PSTKVEAPQQTPNA- 76
Query: 276 ATSRVATISIPESNTTTTTTTPAHP 300
T + P+S TT T +P
Sbjct: 77 TTPSSTKVETPQSPTTKQVPTEINP 101
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 31.6 bits (72), Expect = 2.0
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 155 AAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAK 211
A P+ +A SR + T + S + S P + + PP PA +R+ +
Sbjct: 266 ADAAAQPATAAPAPSRMTDT-NDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGR 321
Score = 29.7 bits (67), Expect = 9.0
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 149 PYPSPA-AAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAW 205
PA AAP P + + + ++ + P + + P PP R A
Sbjct: 268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 31.5 bits (71), Expect = 2.1
Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 593 PHNNLYFVMDYIPGGDLMSLLIK-KGIFEEPLARFYIAELTCAVESVHKMGFIHRDIKPD 651
P +L V P G L+ + + + + + ++ + + + +HR++
Sbjct: 79 PGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAAR 138
Query: 652 NILIDRDGHIKLTDFGLCTGFRWTHNSKYYQSNGDHGRQDSMEPSEEWSQGTPGQECRCI 711
NIL+ D +++ DFG+ + + KY+ S
Sbjct: 139 NILLKSDSIVQIADFGV-ADLLYPDDKKYFYSE--------------------------H 171
Query: 712 NSPLKPLERRRRREHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV-G 770
+P+K ++A E +L YT D WS GV ++EM+ G
Sbjct: 172 KTPIK-----------------------WMALESILFGRYTHQSDVWSYGVTVWEMMSYG 208
Query: 771 SPPFLA 776
+ P+
Sbjct: 209 AEPYAG 214
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 31.8 bits (72), Expect = 2.1
Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 8/136 (5%)
Query: 150 YPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQ 209
+ P + PP I P G P + + + + P P A
Sbjct: 300 FYGPQSTIPP------RIVVPWLPDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSS 353
Query: 210 AKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYA 269
PV V ++ + + + ++ Q Q P ++
Sbjct: 354 DPVVPVAAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPTQAATLAGAAPKG--ATHL 411
Query: 270 STMQALATSRVATISI 285
+ LA R + I
Sbjct: 412 MLEETLADLRGGPVRI 427
>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter. The Epithelial Na+
Channel (ENaC) Family (TC 1.A.06)The ENaC family
consists of sodium channels from animals and has no
recognizable homologues in other eukaryotes or bacteria.
The vertebrate ENaC proteins from epithelial cells
cluster tightly together on the phylogenetic tree:
voltage-insensitive ENaC homologues are also found in
the brain. Eleven sequenced C. elegans proteins,
including the degenerins, are distantly related to the
vertebrate proteins as well as to each other. At least
some ofthese proteins form part of a mechano-transducing
complex for touch sensitivity. Other members of the ENaC
family, the acid-sensing ion channels, ASIC1-3,are homo-
or hetero-oligomeric neuronal H+-gated channels that
mediate pain sensation in response to tissue acidosis.
The homologous Helix aspersa(FMRF-amide)-activated Na+
channel is the first peptide neurotransmitter-gated
ionotropic receptor to be sequenced.Mammalian ENaC is
important for the maintenance of Na+ balance and the
regulation of blood pressure. Three homologous ENaC
subunits, a, b and g, havebeen shown to assemble to form
the highly Na+-selective channel.This model is designed
from the vertebrate members of the ENaC family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 595
Score = 31.6 bits (72), Expect = 2.3
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 202 LQAWSSRQAK-TQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPV 260
L + + + + + P ++ PP++ S++ +
Sbjct: 531 LLWRFRKWWQRRRGPPYAEPPEPVSADTPP---SLQLDDPPTFPSALPLPHA---SGLSL 584
Query: 261 PTTEPPSYAS 270
P T PP+Y +
Sbjct: 585 PGTPPPNYNT 594
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 31.4 bits (71), Expect = 2.3
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 740 YIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPFLANTSAETQYKVINWESCLHIPAE 798
++APE + YT D WS G++L+E+ +GS P+ YK+I
Sbjct: 282 WMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIK-------EGY 334
Query: 799 AQLSPEGADL----ILQLCTGAD 817
LSPE A I++ C AD
Sbjct: 335 RMLSPECAPSEMYDIMKSCWDAD 357
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 31.5 bits (71), Expect = 2.3
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSP-----SPIPPT 197
P + +P SPA P P+ + +R +P P + P + G P SP P
Sbjct: 327 PEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPD 386
Query: 198 RP 199
RP
Sbjct: 387 RP 388
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 31.4 bits (71), Expect = 2.4
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGP 185
P PAAAP + + + Q Q+ TQ+P+ ++ P
Sbjct: 217 PEPAAAPAAAKAQAPAPQ--QAGTQNPAKVDHAAP 249
Score = 29.8 bits (67), Expect = 8.2
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 138 VMDYIP-GEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPP 196
V D +P G+ ++ + P P+ +++ Q QSP++ + P +P+
Sbjct: 176 VGDSVPTGDLILTLSVAGSTPATAPAPASA----QPAAQSPAA---TQPEPAAAPAAAKA 228
Query: 197 TRPAPLQAWSSRQAKTQP 214
PAP QA + AK
Sbjct: 229 QAPAPQQAGTQNPAKVDH 246
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 30.6 bits (69), Expect = 2.4
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAP 201
P P P + P P Q + P G+ + P S P P P
Sbjct: 126 PLPQPPSTAPSYPG----PQYQGYHPMPPQPGMPAPPYSLQYPPPGLLQPQGP 174
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
inhibitor.
Length = 553
Score = 31.3 bits (71), Expect = 2.5
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 18/109 (16%)
Query: 241 PSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSR-----VATISIPESNTTTTTT 295
PS SS+ P P P P++ + A +R V+++S +
Sbjct: 18 PSSSSNRHHHHHTPSPSPPPPSSPSTP-PQILLACNATRFPDTCVSSLS--NAGRVPPDP 74
Query: 296 TPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTN 344
P ++Q S SR + S +S SS N N T
Sbjct: 75 KPIQ-IIQSAISV--SRENLKTAQSMVKS-------ILDSSAGNVNRTT 113
>gnl|CDD|113815 pfam05058, ActA, ActA Protein. The ActA family is found in
Listeria and is associated with motility. ActA protein
acts as a scaffold to assemble and activate host cell
actin cytoskeletal factors at the bacterial surface,
resulting in directional actin polymerisation and
propulsion of the bacterium through the cytoplasm of the
host cell.
Length = 601
Score = 31.3 bits (70), Expect = 2.5
Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 25/189 (13%)
Query: 207 SRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
SR A P + S+PV PSL + S P+ S I ++ PP P+
Sbjct: 399 SRNAGFLP---LNPFASSPV--PSLSPKVPKISAPALISDITKKAPFKNPPQPLKVFNKK 453
Query: 267 SYASTMQALATSRVATISIPESNTTTTTTTPAH--------PLLQRKFSPGDSRSESPA- 317
+ T+ ++ + I T P P ++++ + P+
Sbjct: 454 TTTKTV----LKKITPVKIAPKLAELPATKPQETAIGENKAPFIEKQAETNKQPIDMPSL 509
Query: 318 ---SASSTESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQSPIPERKHMTKEKEDER 374
+TE + P T + ++ G+ + I E K + K EDE+
Sbjct: 510 PVIQKEATERDKEEMKPQTEEKMVEESEPANDANGK----KRSAGIEEGKLIAKSAEDEK 565
Query: 375 RECKVKNYS 383
+ + N++
Sbjct: 566 AKEEPANHT 574
>gnl|CDD|135173 PRK04654, PRK04654, sec-independent translocase; Provisional.
Length = 214
Score = 30.9 bits (69), Expect = 2.6
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Query: 223 STPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEP------PSYASTMQALA 276
+TPV P ++ ++ + Q +PVP P P + Q L
Sbjct: 105 ATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLV 164
Query: 277 TSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTP 327
+ TI +P + + PA P+ G S S +P+ + + + P
Sbjct: 165 PAPHDTI-VPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 31.1 bits (70), Expect = 2.6
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 740 YIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPF 774
++A E L YT D WS GV+L+E++ +G P+
Sbjct: 195 WMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPY 230
Score = 29.9 bits (67), Expect = 5.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 640 KMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+M +HRD+ N+L+ +K++DFGL
Sbjct: 145 EMKLVHRDLAARNVLVAEGRKMKISDFGL 173
>gnl|CDD|235895 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 651
Score = 31.5 bits (72), Expect = 2.6
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 254 PQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRS 313
P P T Y + L + A ++ + T T+ T ++ G S
Sbjct: 464 PLPSGTTTLT----YDAATGTL-SGFPAGTTVTVAGTPPTSVTITPATTPVPYTSGAGIS 518
Query: 314 ESPASASSTESRTPP------LPPTTSSSVNNKNM 342
S T S TP + P T + + +N
Sbjct: 519 LVFNGVSVTLSGTPADGDTFTIGPNTGGTNDGRNA 553
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 31.2 bits (71), Expect = 2.6
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 19/111 (17%)
Query: 152 SPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGP-GSTGSPSPIPPTRPAPLQAWSSRQA 210
+P+ P P P S + +G G G+P+ + P L+ S
Sbjct: 206 TPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLA---PGVLE--GSEPT 260
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQ------QQKPQ 255
T P S P P+ A + S S + Q QQ+ Q
Sbjct: 261 PTAPS-------SAPATAPAAAAPQAAATSSSASGNFVVQVGAVSDQQRAQ 304
Score = 30.8 bits (70), Expect = 3.4
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 177 PSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIA 236
P+ SG T S P P + + S+ K++ PV A
Sbjct: 195 PARPDLSGGMGTPSVQPAPAPQ-GDVLPVSNSTLKSEDPT------GAPVTSSGFLGAPT 247
Query: 237 PTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATS 278
+P ++ + P PS P T P + A A ++S
Sbjct: 248 TLAP----GVLEGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 31.6 bits (71), Expect = 2.6
Identities = 34/140 (24%), Positives = 49/140 (35%), Gaps = 11/140 (7%)
Query: 128 SFQDKDNLYFV-MDYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQS-PTQSPSSGIYSGP 185
D++ L F YI G+ IP P P ++ + S S PT S +S +
Sbjct: 529 KLSDEEILKFTPAQYIQGDAWIP---GKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFS 585
Query: 186 GSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTA-IAPTSPPSYS 244
+ S P T P A P I+ S P L + P+SP S
Sbjct: 586 SDSPSTVVAPSTSP---PAGHLGSPPATPSKIVSPSTSPPAS--HLGSPSTTPSSPESSI 640
Query: 245 SSIQQQQQKPQPPSPVPTTE 264
+ P+ V +TE
Sbjct: 641 KVASTETASPESSIKVASTE 660
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 30.2 bits (68), Expect = 2.7
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 164 SASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPV 215
I Q P+ P +P+P+ P PAP A + T P+
Sbjct: 40 GLGIDLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPM 91
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This
family consists of several eukaryotic extracellular
matrix protein 1 (ECM1) sequences. ECM1 has been shown
to regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause
lipoid proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 31.1 bits (70), Expect = 2.7
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 154 AAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQ 213
AA P PP SR+ P P + + P G PP P + +
Sbjct: 48 AAPPSPP-------LSRRLPVDHPVTSQH-DPPFEGQSEVQPPPSPEDIPVYEEDWPTFL 99
Query: 214 PVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
+ ++ + P + LQ + P P I+Q++ KP P + EP S+
Sbjct: 100 NPNVDKAGPAVPQEAIPLQKELPPPQVP-----IEQKEVKPAPLADQSPPEPESW 149
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 30.9 bits (70), Expect = 2.7
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 141 YIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPA 200
+ +L+P P A PPP + R P S + P +
Sbjct: 46 KVLLGELVPLPGTTATQPPPVVLTPWSDPRLP---DPPHLPDPQTHSATAHRNPHPPLNS 102
Query: 201 PLQAWSSRQAKTQPVVIM 218
P + Q QPV+ +
Sbjct: 103 PARIAHVHQ-DFQPVLHL 119
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 31.4 bits (71), Expect = 2.8
Identities = 16/75 (21%), Positives = 27/75 (36%)
Query: 261 PTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASAS 320
EP + A T + + ++ +T T P Q S + + S
Sbjct: 74 KDLEPLALPMPNLAPITPPSSEPTPAPPSSESTATRTPDPNQQALESTESTSTTSADCND 133
Query: 321 STESRTPPLPPTTSS 335
S +S TP L + +S
Sbjct: 134 SEQSSTPNLNSSDTS 148
Score = 30.7 bits (69), Expect = 4.2
Identities = 45/231 (19%), Positives = 67/231 (29%), Gaps = 46/231 (19%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSR 208
P + P PPS ++ P Q ST S S S
Sbjct: 89 ITPPSSEPTPAPPSSESTATRTPDPNQQALE-------STESTSTTSADCN------DSE 135
Query: 209 QAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
Q+ T + + S+ PS + + SP SSS + Q + PSP + EP
Sbjct: 136 QSSTPNLNSSDTSTSSSGALPS-TSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEP--- 191
Query: 269 ASTMQALATSRVATISIPESNTTTTTTTPAHPLL----QRKFSPGDSRSESPASASSTES 324
T A P L Q F+ G S + S +
Sbjct: 192 ------------------------TAAPQAKPELPKKKQAMFTLGGSSGDDDED-SFEDR 226
Query: 325 RTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQSPIPERKHMTKEKEDERR 375
+ P +S M G K P +K + +++ R
Sbjct: 227 MSSQDPKRSSLPKPKPKMFQLGGSDELGKSLPSLMSPRKKTASFKEQVVTR 277
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This region
tends to appear at the N-terminus of proteins also
containing DNA-binding HMG (high mobility group) boxes
(pfam00505) and appears to bind the armadillo repeat of
CTNNB1 (beta-catenin), forming a stable complex.
Signaling by Wnt through TCF/LCF is involved in
developmental patterning, induction of neural tissues,
cell fate decisions and stem cell differentiation.
Isoforms of HMG T-cell factors lacking the N-terminal
CTNNB1-binding domain cannot fulfill their role as
transcriptional activators in T-cell differentiation.
Length = 200
Score = 30.6 bits (69), Expect = 2.8
Identities = 24/125 (19%), Positives = 34/125 (27%), Gaps = 8/125 (6%)
Query: 157 PPPPPSYSASIQSR--QSPTQSPSSGIYSGPGSTGSPSPIPPTRPAP---LQAWSSRQAK 211
PP SY + + + G Y GP +G P + P P L K
Sbjct: 69 PPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYLPNGSLSPLPPSSNK 128
Query: 212 TQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQK---PQPPSPVPTTEPPSY 268
V V +P +PP + + P P + P S
Sbjct: 129 VPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRPPHPPDISPFYPLSP 188
Query: 269 ASTMQ 273
Q
Sbjct: 189 GGVGQ 193
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 31.0 bits (70), Expect = 2.8
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 570 GAFGEVTLVRKIDTNHLYVMKG--SPHNNLYFVMDYIPGGDLMSLLIKKGIFEEPLARFY 627
G E + + D +++ ++G + N + V +Y+ G L S L K E L
Sbjct: 52 GFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKH---EGQLVAGQ 108
Query: 628 IAELTCAVESVHK----MGFIHRDIKPDNILIDRDGHIKLTDFG 667
+ + + S K MG++H+ + +L++ D K++ F
Sbjct: 109 LMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFR 152
>gnl|CDD|221170 pfam11696, DUF3292, Protein of unknown function (DUF3292). This
eukaryotic family of proteins has no known function.
Length = 641
Score = 31.3 bits (71), Expect = 2.8
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 323 ESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKIN------HQSPIPERKHMTKEKEDERRE 376
E+ PLPP SSS+ + + + + Q+ PE + E E++
Sbjct: 399 EANAAPLPPPPSSSLRKAPSSPASIDHKQLNLGASEEEIDQAAAPEPEAPVAEAEEKAEP 458
Query: 377 CKVKNYSPQAFKFF 390
K K + + FF
Sbjct: 459 PKKKGWGSRILGFF 472
>gnl|CDD|184735 PRK14547, rplD, 50S ribosomal protein L4; Provisional.
Length = 298
Score = 31.1 bits (70), Expect = 2.9
Identities = 12/70 (17%), Positives = 21/70 (30%)
Query: 254 PQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRS 313
P P + A + +I + + TP+ P R + RS
Sbjct: 216 AAAPVPATNVADQAPYGEDSARPGNPPEGQAIKGNEDSEKFHTPSSPWYGRTQAEVWFRS 275
Query: 314 ESPASASSTE 323
+ A A+
Sbjct: 276 AAAAEAAGFV 285
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 31.0 bits (70), Expect = 2.9
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 630 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL----------------CTGFR 673
E+ V +HK F+H D+ N + D +K+ D+G+ C R
Sbjct: 107 EIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLR 166
Query: 674 WTHNSKYYQSNGDHGRQDSMEPSEEWSQG 702
W + +G + +PS W+ G
Sbjct: 167 WLAPELVGEFHGGLITAEQTKPSNVWALG 195
>gnl|CDD|219395 pfam07387, Seadorna_VP7, Seadornavirus VP7. This family consists
of several Seadornavirus specific VP7 proteins of around
305 residues in length. The function of this family is
unknown. However, it appears to be distantly related to
protein kinases.
Length = 308
Score = 31.0 bits (70), Expect = 3.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 642 GFIHRDIKPDNILIDRDGHIKLTD 665
G +H D P N++ D++G++KL D
Sbjct: 163 GTLHGDCNPQNLMCDKNGYLKLVD 186
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 31.0 bits (70), Expect = 3.3
Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 36/236 (15%)
Query: 165 ASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQ-PVVIMQSVK- 222
S S T P P S R+ K P Q+++
Sbjct: 498 DSPIP--SEFTILDRKSELSIERTVKPVSSEFGLP------SQREDKLAIPTEGTQNLQG 549
Query: 223 -STPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPT----------------TEP 265
S ++ Q ++P + S++ + P+P T
Sbjct: 550 ISDHPEQFEFQNELSPLETKNNESNLSSDAETEGSPNPEMPSWSSVTVPSEALDNYETTN 609
Query: 266 PSYASTMQALATSRVATISIPESNTTTTTTTPAHPLL---QRKFSPGDSR-----SESPA 317
PS A ++ A + + T ++ ES + P +++ S D S S
Sbjct: 610 PSNAKEVRNFAETGIQTTNVGESADLLLISNPMEVEPMESEKEESESDGSFIEVDSVSST 669
Query: 318 SASSTESRTPPLPPTTSSSVNNKNMTNGTGGGRTYKINHQSPIPER-KHMTKEKED 372
S++ P + ++ N G + + M +E++D
Sbjct: 670 LELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKD 725
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional.
Length = 832
Score = 31.0 bits (70), Expect = 3.4
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 206 SSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPS 258
SS A T V+++Q T Q L T +P P S +PPS
Sbjct: 780 SSDFAATVSVLVVQQYVGTGPQPDDLGTPESPAHSPEQYYSYNLNN--RRPPS 830
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 30.2 bits (68), Expect = 3.5
Identities = 24/114 (21%), Positives = 31/114 (27%), Gaps = 13/114 (11%)
Query: 154 AAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQ 213
AA P PP + R P P P + + A
Sbjct: 39 AAIPLPPKPQGDRDEPRVLPAVVQVV-----------ALPTQPPEGVAQEIQDAGDAAAA 87
Query: 214 PVVIMQSVKSTPVQ-KPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
V Q V PV+ P+ A T P P P+P P +P
Sbjct: 88 SVD-PQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPV 140
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which
suggests a potential regulatory role for tyrosine
phosphorylation in modulating WW domain-ligand
interactions. Given the likelihood that WWP1 and WWP2
function as E3 ubiquitin-protein ligases, it is possible
that initial substrate-specific recognition occurs via
WW domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 29.3 bits (66), Expect = 3.7
Identities = 15/65 (23%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 139 MDYIPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR 198
Y+ E L Y PP Y +P + G P PP
Sbjct: 51 GAYVHLEPLPAYG----QYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPPPY 106
Query: 199 PAPLQ 203
P P Q
Sbjct: 107 PGPPQ 111
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 30.5 bits (68), Expect = 3.7
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 158 PPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVI 217
PPPP+ SI ++P P +P P A + + +P +
Sbjct: 247 PPPPTQQHSIIDNSLSLKTP-------PECLLTPLPPSALPSADDNLKTPAECLLRP--L 297
Query: 218 MQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTT 263
S + P L P PPS ++++ P PPS +P +
Sbjct: 298 PPSADDNIKECP-LALKPPPPLPPSVDDNLKECLLAPLPPSALPPS 342
>gnl|CDD|225714 COG3173, COG3173, Predicted aminoglycoside phosphotransferase
[General function prediction only].
Length = 321
Score = 30.5 bits (69), Expect = 3.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 639 HKMGFIHRDIKPDNILIDRDGHIKLTDFGL 668
+H D +P N++ID + D+ L
Sbjct: 196 GPPVLVHGDYRPGNLIIDPGRPTGVLDWEL 225
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 30.6 bits (68), Expect = 3.8
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 3/116 (2%)
Query: 183 SGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPS 242
+ P + P A A + +A +P + P KP P + +
Sbjct: 183 AAPEAGSGEEAAAPGEEAG-AAGAEGEAGEEPAADAEP--EQPEAKPEEAAPEKPQAEEA 239
Query: 243 YSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPA 298
++ Q+ ++KP + + + A+ +A A + ++ PA
Sbjct: 240 KAAEEQKAEEKPAEEAGASSAAQEAPAAEQEAAPAEEPAAPPQEACSESSPEAPPA 295
>gnl|CDD|114541 pfam05819, NolX, NolX protein. This family consists of Rhizobium
NolX and Xanthomonas HrpF proteins. The interaction
between the plant pathogen Xanthomonas campestris pv.
vesicatoria and its host plants is controlled by hrp
genes (hypersensitive reaction and pathogenicity), which
encode a type III protein secretion system. Among type
III-secreted proteins are avirulence proteins, effectors
involved in the induction of plant defence reactions.
HrpF is dispensable for protein secretion but required
for AvrBs3 recognition in planta, is thought to function
as a translocator of effector proteins into the host
cell. NolX, a soybean cultivar specificity protein, is
secreted by a type III secretion system (TTSS) and shows
homology to HrpF of the plant pathogen Xanthomonas
campestris pv. vesicatoria. It is not known whether NolX
functions at the bacterium-plant interface or acts
inside the host cell. NolX is expressed in planta only
during the early stages of nodule development.
Length = 545
Score = 30.8 bits (69), Expect = 3.9
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Query: 145 EKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQA 204
+ + SPA++P P+ SA P + + + G P +
Sbjct: 26 SRAVQNQSPASSPAADPAPSAPDGQACQPIEKRTFNVKDLKGDDAPPVVDGSSVTWNGGT 85
Query: 205 WSSRQAKTQPVVIMQSVKS-TPVQKPSLQTAIA-PTSPPSYSSSIQQQQQKP 254
+ + Q + + K P++ L I P++PP S++Q Q+ P
Sbjct: 86 LTPSE--LQIIGTLNLHKDKLPLEWDKLDDKINDPSTPPDLKSALQGLQKDP 135
>gnl|CDD|214832 smart00817, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 411
Score = 30.6 bits (69), Expect = 4.0
Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 159 PPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIM 218
PP S ++ R+ TQ YS P P P LQ +
Sbjct: 71 PPHSSFPWLRPREHETQQYE---YSLP-----VHPPPLPSQPSLQPQQPGLKPFLQPTAL 122
Query: 219 QSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSY 268
+ ++TP QK Q + PP + + + P P TE P Y
Sbjct: 123 PTNQATP-QKNGPQPPMHLGQPPLQQAELPMIPPQVAPSDKPPQTELPLY 171
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a
role in the biomineralisation of teeth. They seem to
regulate formation of crystallites during the secretory
stage of tooth enamel development and are thought to
play a major role in the structural organisation and
mineralisation of developing enamel. The extracellular
matrix of the developing enamel comprises two major
classes of protein: the hydrophobic amelogenins and the
acidic enamelins. Circular dichroism studies of porcine
amelogenin have shown that the protein consists of 3
discrete folding units: the N-terminal region appears to
contain beta-strand structures, while the C-terminal
region displays characteristics of a random coil
conformation. Subsequent studies on the bovine protein
have indicated the amelogenin structure to contain a
repetitive beta-turn segment and a "beta-spiral" between
Gln112 and Leu138, which sequester a (Pro, Leu, Gln)
rich region. The beta-spiral offers a probable site for
interactions with Ca2+ ions. Muatations in the human
amelogenin gene (AMGX) cause X-linked hypoplastic
amelogenesis imperfecta, a disease characterised by
defective enamel. A 9bp deletion in exon 2 of AMGX
results in the loss of codons for Ile5, Leu6, Phe7 and
Ala8, and replacement by a new threonine codon,
disrupting the 16-residue (Met1-Ala16) amelogenin signal
peptide.
Length = 165
Score = 29.8 bits (67), Expect = 4.1
Identities = 21/83 (25%), Positives = 24/83 (28%), Gaps = 3/83 (3%)
Query: 195 PPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTA-IAPTSPPSYSSSIQQQQQK 253
PPT QPVV Q + P Q T P P Q Q
Sbjct: 47 PPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQ--PFQPQP 104
Query: 254 PQPPSPVPTTEPPSYASTMQALA 276
QPP P +P + L
Sbjct: 105 LQPPQPQQPMQPQPPVHPIPPLP 127
>gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation
region.
Length = 295
Score = 30.4 bits (68), Expect = 4.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRP 199
P+P APPPPP + + T+ P++ G S SP+ P+
Sbjct: 222 PTPMLAPPPPPPMARPVPLPMPDTKPPTTSTEGGATSPTSPTYSTPSTS 270
>gnl|CDD|116408 pfam07794, DUF1633, Protein of unknown function (DUF1633). This
family contains sequences derived from a group of
hypothetical proteins expressed by Arabidopsis thaliana.
These sequences are highly similar and the region
concerned is about 100 residues long.
Length = 698
Score = 30.6 bits (68), Expect = 4.3
Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 28/232 (12%)
Query: 229 PSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPES 288
P+ P + + Q + +PQ P+ P ST + R+ S+
Sbjct: 282 PADPAIALPAAQLDPIEEVPQIEFRPQADFPIKNEIPKDSCSTSELPLIRRMRCGSLHVQ 341
Query: 289 NTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTNGTGG 348
A L + +S + S A AS++ P LP + N N
Sbjct: 342 RANAEAHARADDLSAAVAAARNSLAASHAQASASH---PSLP-----AANAANPAAAVAI 393
Query: 349 GRTYKINHQSPIPERKHMTKEKED---------ERRECKVKNYSPQAFKFFMEQHIENVI 399
K H S +R H E + E R C+V +Q ++
Sbjct: 394 AAGNKPFHWSYTHDRDHPIIEDKAGLANLLAHIEGRLCQVPGDCCY------KQVGCSLR 447
Query: 400 KSHKQRVFRRLQLETEMAKIGLSAEAQCQMRKMLSQKESNYIRLKRAKMDKS 451
S K+ + E +G + R++ E ++R K++ S
Sbjct: 448 ASAKEGEEGERAIREEDPHLGADQD-----REVRFGAEGIVPGIERLKIELS 494
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 30.5 bits (68), Expect = 4.6
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 22/135 (16%)
Query: 142 IPGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAP 201
+P L P A P + +P +P+ + P + +P+ P P P
Sbjct: 77 LPSMDLGPQVGSFLAQLPAMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIP 136
Query: 202 LQAWSSRQAKTQPVVIMQSV--KSTPVQKPS-------LQTAIAPTSPPSYSSSIQQQQQ 252
QP ++ Q+ + PS L ++ +PP+ Q Q+Q
Sbjct: 137 --------DAVQPAILGQAALQNAFTFLNPSNFDASSLLGQSVPTFAPPNLDFVAQMQRQ 188
Query: 253 -----KPQPPSPVPT 262
P P+P T
Sbjct: 189 FFPGMTPAQPAPAGT 203
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 30.6 bits (69), Expect = 4.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 740 YIAPEVLLRTGYTQLCDWWSVGVILYEML-VGSPPF 774
++APE + YT D WS G++L+E+ +G P+
Sbjct: 280 WMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPY 315
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 30.6 bits (69), Expect = 4.9
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 23/115 (20%)
Query: 248 QQQQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTT------TPAHP- 300
QQ QP +P E P+ + T+R ++ + T+ P
Sbjct: 357 QQSLLAKQPATPTRGVESPARSPGGSPRTTNRSGPRNVASVSPMTSVKKIDPNMKPGAAS 416
Query: 301 ----------LLQRKF-SPGDSRSESPASASSTESRTPPLPPTTSSSVNNKNMTN 344
LL +K SPG SP S T S +T+
Sbjct: 417 EGVLANFFNSLLSKKTGSPG-----SPGGGGSPAGTGTNTQGTAKKSGQKPVLTD 466
>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional.
Length = 744
Score = 30.7 bits (69), Expect = 4.9
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 197 TRPAPLQAW--SSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKP 254
+RP+ A ++R A + QS S+P ++ +T A + S +
Sbjct: 3 SRPSAFDALMSNARAAAKKKQPQTQSQSSSPKKRKIGETQDANLGKTNVSEGTLPKT--E 60
Query: 255 QPPSPVPTTEPPSYASTMQA----LATSRVATISIPESNTT 291
P + P +++ A T + T+S P+ +
Sbjct: 61 DTIEPKSDSAKPRSSTSSIAEDSKTGTKKAQTLSKPKKDEM 101
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1. This region is found
in some of the Diaphanous related formins (Drfs). It
consists of low complexity repeats of around 12
residues.
Length = 160
Score = 29.5 bits (66), Expect = 5.0
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 142 IPGEKLIPYPSP---AAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR 198
+PG IP P P A A PPPP + P +GI P + +PP
Sbjct: 54 LPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPP 113
Query: 199 PAP 201
P P
Sbjct: 114 PLP 116
Score = 28.8 bits (64), Expect = 8.0
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 142 IPGEKLIPYPSP----AAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPT 197
+PG IP P P A PPPPP P G+ P IPP
Sbjct: 78 LPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPP 137
Query: 198 RPAP 201
P
Sbjct: 138 PPGM 141
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 30.5 bits (69), Expect = 5.0
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 199 PAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKP--QP 256
PLQ ++ ++TP+ ++ PT SSS + +
Sbjct: 149 GPPLQ--HRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLES 206
Query: 257 PSP--VPTTEPPSYASTMQALATSRVATISIPE-SNTTTTTTTPAHPLLQRKFSPGDSRS 313
PS V T PP Y++ TSR +T+S + ++ TP R S S
Sbjct: 207 PSNLQVTTDVPPPYSN-----GTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSS 261
Query: 314 ESPASASST 322
+P S
Sbjct: 262 INPVSGLDE 270
Score = 29.3 bits (66), Expect = 9.9
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 12/114 (10%)
Query: 142 IPGEKLIPYPSPAAAPPPPP---SYSASIQSRQSPTQSPSSGIYSGPGSTGSPSP--IPP 196
P A P S + + P+ SP S S P + SPS +
Sbjct: 157 RDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRS--LSNPTTLESPSNLQVTT 214
Query: 197 TRPAPLQAWSSRQAKTQP-----VVIMQSVKSTPVQKPSLQTAIAPTSPPSYSS 245
P P +SR + ++ + + S T+ + + P
Sbjct: 215 DVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSSINPVSGL 268
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 29.0 bits (65), Expect = 5.0
Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 24/82 (29%)
Query: 250 QQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPG 309
P PP PV S A P T T+TPA P P
Sbjct: 81 PLTPPAPPEPVTPPTAQSPA----------------PAVPTPPPTSTPAVP-------PA 117
Query: 310 DSRSESPASASSTESRTPPLPP 331
+ PA A++ PP PP
Sbjct: 118 PAA-AVPAPAAAPPPSDPPQPP 138
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 30.7 bits (69), Expect = 5.0
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 291 TTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLPPTTSSSVNN 339
TTP + K + DS S S S+S T P + S ++N
Sbjct: 105 NDNVTTPIKANKKEKHNL-DSSSSSSISSSLTNISFFSSPTSIYSCLSN 152
>gnl|CDD|226676 COG4223, COG4223, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 422
Score = 30.3 bits (68), Expect = 5.0
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)
Query: 184 GPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSY 243
P +P A A + A + K+ PV
Sbjct: 5 REPVRIKPGAVPIV--AAKAAEQTDPAAAEEAADADQPKAEPVH---ADQTDLEADGVGQ 59
Query: 244 SSSIQQQQQKP-QPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPA 298
+ + + + K +P P P ++ P+ + A T T TPA
Sbjct: 60 AGTEESAEAKAVEPEMPYPGSDAPADRTAASDANAEDAAAARSASKPTATRGPTPA 115
>gnl|CDD|114205 pfam05467, Herpes_U47, Herpesvirus glycoprotein U47.
Length = 627
Score = 30.6 bits (68), Expect = 5.1
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 234 AIAPTSPPSYSSSIQQQQQKPQPPSP-VPTTEPPSYASTMQALATSRVATISIPESNTTT 292
+I T+P S SS P PS +PT EPP L T + P + T T
Sbjct: 235 SILTTTPSSTPSSTSASITSPHIPSTNIPTPEPPPVTKNFTELHTDTIKV--TPNTPTIT 292
Query: 293 TTTT 296
TT
Sbjct: 293 AQTT 296
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 30.2 bits (68), Expect = 5.4
Identities = 11/56 (19%), Positives = 17/56 (30%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQA 204
P P P + + + P +P + P + P P P P P
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPV 96
>gnl|CDD|225162 COG2253, COG2253, Uncharacterized conserved protein [Function
unknown].
Length = 258
Score = 29.8 bits (67), Expect = 5.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 857 MDTS---NFDPVDPDKLRNSDSMLDELSDELKSPFHGFFEFT 895
+DT N +D + +++E +K PFH + T
Sbjct: 109 VDTELGYNRIVLDHEFYTRLLVLVEENVAFIKVPFHHSYPIT 150
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit
SFB2/subunit SFB3 [Intracellular trafficking and
secretion].
Length = 861
Score = 30.5 bits (69), Expect = 5.5
Identities = 29/165 (17%), Positives = 42/165 (25%), Gaps = 26/165 (15%)
Query: 161 PSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQS 220
++ + S++S + +S P PP Q+
Sbjct: 15 QVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPL---QQQSRRQIDQAATA------ 65
Query: 221 VKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQK---PQPPSPVPTTEPPSYASTMQALAT 277
+ A PS S Q QQK P S T P L
Sbjct: 66 ----------MHNTGANNPAPSVMSPAFQSQQKFSSPYGGSMADGTAPKP----TNPLVP 111
Query: 278 SRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASST 322
+ P + P P L F + + SP ST
Sbjct: 112 VDLFEDQPPPISDLFLPPPPIVPPLTTNFVGSEQSNCSPKYVRST 156
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2). DAZ
associated protein 2 has a highly conserved sequence
throughout evolution including a conserved polyproline
region and several SH2/SH3 binding sites. It occurs as a
single copy gene with a four-exon organisation and is
located on chromosome 12. It encodes a ubiquitously
expressed protein and binds to DAZ and DAZL1 through DAZ
repeats.
Length = 136
Score = 29.0 bits (65), Expect = 5.5
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 20/106 (18%)
Query: 237 PTSPPSYSSSIQQ------QQQKPQPPSPVPTTEPPSYASTMQALATSRVATISIPESNT 290
P +PP+YS Q Q Q PQ +P P PS M + + P +
Sbjct: 2 PDAPPAYSELYQPSYVVPPQAQMPQASAPYP---GPSMYLPMAQVMAVGPQSSHPPMAYY 58
Query: 291 TTTTTTPAHP-----LLQRKFSPGDSRSESPASASSTESRTPPLPP 331
P +P L+Q F G +R +S PP PP
Sbjct: 59 PIGAPPPVYPPGSTVLVQGGFDAG-ARFGPGTGSS-----IPPPPP 98
Score = 28.3 bits (63), Expect = 8.8
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 149 PYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPL 202
P +A P P Y Q QS + P G+P P+ P L
Sbjct: 23 QMPQASAPYPGPSMYLPMAQVMAVGPQSSHPPMAYYP--IGAPPPVYPPGSTVL 74
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 30.3 bits (68), Expect = 5.8
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 162 SYSASIQSRQSPTQS--PSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQ 219
S S +Q + P S PG++G P P ++ + ++ +K+ V +
Sbjct: 372 SVSLVTAKKQKEPKKEEPVDSNPSSPGNSGPARPSPESKDKGKRKAANEVSKSPASVPAK 431
Query: 220 SVKSTPVQKPSLQTAIAPTSPPSYSSS 246
+K+ K S + T S SSS
Sbjct: 432 KLKTENAPKSSSGKSTPQTFSGSKSSS 458
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 30.0 bits (68), Expect = 5.8
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 8/90 (8%)
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP 259
APL + A + P A APT P KP PP+
Sbjct: 113 APLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEP-------PAASKPTPPAA 165
Query: 260 VPTTEPPSYA-STMQALATSRVATISIPES 288
EP A +A + +P S
Sbjct: 166 AKPPEPAPAAKPPPTPVARADPRETRVPMS 195
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 30.5 bits (68), Expect = 5.8
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 259 PVPTTEP-PSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPA 317
+P + SY T L + T P + T T F+ ++ + A
Sbjct: 1180 GIPAPQLLSSYIPTGSVLYQDPIFTYIPPGIIGMSGTNT---------FTFKAAQLQLSA 1230
Query: 318 SASSTESRTPPLPPTTSSSVNNKNMTNGTG 347
++S + TP PP++SSS + ++++ G
Sbjct: 1231 ASSPPAATTPTPPPSSSSSSSAQSISTSPG 1260
>gnl|CDD|148271 pfam06566, Chon_Sulph_att, Chondroitin sulphate attachment domain.
This family represents the chondroitin sulphate
attachment domain of vertebrate neural transmembrane
proteoglycans that contain EGF modules. Evidence has
been accumulated to support the idea that neural
proteoglycans are involved in various cellular events
including mitogenesis, differentiation, axonal outgrowth
and synaptogenesis. This domain contains several
potential sites of chondroitin sulphate attachment, as
well as potential sites of N-linked glycosylation.
Length = 253
Score = 30.0 bits (67), Expect = 6.0
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 11/126 (8%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIP-PTRPAPLQAWSSRQ 209
P + +A +++ ++ SG S G P+ +P P S
Sbjct: 61 PEEGLEASAAVTPTAWLEASSPGLGGVTAEAGSGD-SQGLPATLPTPDEALGNSNPSL-- 117
Query: 210 AKTQPVVIMQSVKSTPVQKPSLQTAIAPTSP-----PSYSSSIQQQQQKPQPPSPVPTTE 264
A + P KPSL + SP S+ P+P SP T
Sbjct: 118 ALPEATEASNPPSPGPGDKPSLLPELPKESPVEVWLNLGGST--PDPAAPEPTSPAQGTL 175
Query: 265 PPSYAS 270
P AS
Sbjct: 176 EPQPAS 181
>gnl|CDD|177451 PHA02669, PHA02669, hypothetical protein; Provisional.
Length = 210
Score = 29.6 bits (66), Expect = 6.2
Identities = 18/76 (23%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 124 KLYYSFQDKDNLYFVMDYIPG----EKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSS 179
+Y +F PG E L P A PP Y + S
Sbjct: 111 PMYENFCGNGTHRHSPSNDPGYHSRETLCSGPPRQANIPPVTPYPDEVSVGVGSGPSTEH 170
Query: 180 GIYSGPGSTGSPSPIP 195
G Y G G P P
Sbjct: 171 GHYEGDGPEQDLEPEP 186
>gnl|CDD|200321 TIGR03751, conj_TIGR03751, conjugative transfer region lipoprotein,
TIGR03751 family. Members of this protein family are
found occasionally on plasmids. Usually, however, they
are found on the bacterial main chromosome in regions
flanked by markers of conjugative transfer and/or
transposition [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 124
Score = 28.5 bits (64), Expect = 6.2
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 23/115 (20%)
Query: 187 STGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYS-- 244
ST +P L W+ + ++ + + P+ P ++ SY+
Sbjct: 12 STSKEEMLPEGGLTMLDIWNGGGSSSRQLQDYRQTLRRPLSDPENYASLNEQE--SYTRT 69
Query: 245 --SSIQQQ-QQKPQP--------------PSPVP--TTEPPSYASTMQALATSRV 280
+ I Q + P P P+PVP +T P Y AL R
Sbjct: 70 AENEISQLFPRLPNPDLVMYVFPHLAGGDPTPVPGYSTVFPFYEQVQYALPGERT 124
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 29.8 bits (66), Expect = 6.5
Identities = 34/137 (24%), Positives = 50/137 (36%), Gaps = 13/137 (9%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSP---IPPTRP 199
P + P PAAAP P A S S + S + P S
Sbjct: 104 PPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAES----AAPAKEEEKSKEEGEAKKTE 159
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSP 259
AP A ++++ K+ S S+ PS + A T P SS + P
Sbjct: 160 AP--AAAAQETKSDAAPASDSKPSSSEAAPSSKETPAATEAP---SSTAKASAPAAPAEE 214
Query: 260 VPTTEPPSYASTMQALA 276
V +E P+ A++ Q +A
Sbjct: 215 VKPSEAPA-ANSDQTVA 230
>gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the
PI-3 kinase family [Signal transduction mechanisms / Cell
division and chromosome partitioning / Chromatin
structure and dynamics / DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 2105
Score = 30.1 bits (68), Expect = 6.5
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 18/62 (29%)
Query: 632 TCAVESV--HKMGFIHRDIKPDNILIDRD-GHIKLTDFGLCTG-------------FRWT 675
+ AV SV + +G D P NILIDR GH+ DFG FR T
Sbjct: 1933 SLAVYSVIGYILGL--GDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLT 1990
Query: 676 HN 677
N
Sbjct: 1991 RN 1992
>gnl|CDD|110602 pfam01611, Filo_glycop, Filovirus glycoprotein. This family
includes an extracellular region from the envelope
glycoprotein of Ebola and Marburg viruses. This region
is also produced as a separate transcript that gives
rise to a non-structural, secreted glycoprotein, which
is produced in large amounts and has an unknown
function. Processing of this protein may be involved in
viral pathogenicity.
Length = 364
Score = 29.8 bits (67), Expect = 7.0
Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 21/146 (14%)
Query: 152 SPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAK 211
P+ P P + +I T S ++G S W +++
Sbjct: 231 DPSHTPQFLPQLNETIYLTN--TLSNTTGKLIWTVDPSIDSGSGEWAF-----WETKKNV 283
Query: 212 TQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQ-PPSPVPTTEPPSYAS 270
T+ + STP P T+ S + + + + PS TT + +
Sbjct: 284 TKQGQS-STCLSTPSLSPR-------TTNHSRQAVTELDKNRTSLQPSTNNTTTISTNNT 335
Query: 271 TMQALATSRVATISIPESNTTTTTTT 296
+ +T SIP N T +
Sbjct: 336 -----SKHNFSTQSIPLQNFTNDNSQ 356
>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24).
This family consists of several MGC-24 (or Cd164
antigen) proteins from eukaryotic organisms.
MGC-24/CD164 is a sialomucin expressed in many normal
and cancerous tissues. In humans, soluble and
transmembrane forms of MGC-24 are produced by
alternative splicing.
Length = 187
Score = 29.2 bits (65), Expect = 7.0
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 187 STGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSS 246
+T S S T P+ S+ + P T K + T + PTS P S+
Sbjct: 104 TTDSCSVATTT---PVPTNSTAKPTITPSPTTSHHHVTSEPKTN--TTVTPTSQPDRKST 158
Score = 28.8 bits (64), Expect = 8.4
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 151 PSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSG-PGSTGSPSPIPPTRPAPLQAWS 206
S A P P + +A SPT S +T +P P R + A S
Sbjct: 108 CSVATTTPVPTNSTAKPTITPSPTTSHHHVTSEPKTNTTVTP-TSQPDRKSTFDAAS 163
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 29.8 bits (67), Expect = 7.0
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 1/112 (0%)
Query: 156 APPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSP-IPPTRPAPLQAWSSRQAKTQP 214
AP + A+ QS Q Q + P PP P P Q ++ +
Sbjct: 72 APQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEE 131
Query: 215 VVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPP 266
+ P +P A P + +QQ Q + P P + P
Sbjct: 132 ARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRP 183
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 28.6 bits (64), Expect = 7.1
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 25/99 (25%)
Query: 254 PQPPSPVPTTEPPSYASTMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRS 313
P P P P P A + + A S SN++ TT GDS +
Sbjct: 20 PAGPGPGPNAPPAPAAPGVDSSAGSSGGEAGSSGSNSSNTT--------------GDSST 65
Query: 314 E--SPASASSTESRTPPLPPTTSSSVNNKNMTNGTGGGR 350
SPA+A++ S +PP P T+GTG R
Sbjct: 66 GDQSPAAAAAHNS-SPPEGPA--------GTTSGTGHTR 95
>gnl|CDD|219594 pfam07816, DUF1645, Protein of unknown function (DUF1645). These
sequences are derived from a number of hypothetical
plant proteins. The region in question is approximately
270 amino acids long. Some members of this family are
annotated as yeast pheromone receptor proteins AR781 but
no literature was found to support this.
Length = 191
Score = 29.0 bits (65), Expect = 7.2
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 286 PESNTTTTTTTPAHPLLQRKFSPGDSR--SESPASASSTESRTPPLPPTTSSSVNN-KNM 342
P S + L R SP S+S ++ PP SSS +
Sbjct: 37 PRSESAFAPARLRRAL--RSLSPERGGGSSDSESTDEGELEGVPPSSYCVSSSPASSSRK 94
Query: 343 TNGTGGGRTYKI 354
++ TG + +++
Sbjct: 95 SSSTGSSKRWRL 106
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 29.9 bits (67), Expect = 7.3
Identities = 24/111 (21%), Positives = 33/111 (29%), Gaps = 10/111 (9%)
Query: 143 PGEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTR---P 199
E+ P P AA P PP + + ++ P P R P
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAA-----APRAEKPKKDKPRRERKP 67
Query: 200 APLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQ 250
P W +P ++ P L AI P Y + IQ Q
Sbjct: 68 KPASLWKLEDFVVEPQE-GKTRFHDFNLAPELMHAIHDLGFP-YCTPIQAQ 116
>gnl|CDD|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type
III, alpha isoform, catalytic domain; The PI4K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI4Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 4-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
to generate PtdIns(4)P, the major precursor in the
synthesis of other phosphoinositides including
PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two
isoforms of type III PI4K, alpha and beta, exist in most
eukaryotes. PI4KIIIalpha is a 220 kDa protein found in
the plasma membrane and the endoplasmic reticulum (ER).
The role of PI4KIIIalpha in the ER remains unclear. In
the plasma membrane, it provides PtdIns(4)P, which is
then converted by PI5Ks to PtdIns(4,5)P2, an important
signaling molecule. Vertebrate PI4KIIIalpha is also part
of a signaling complex associated with P2X7 ion
channels. The yeast homolog, Stt4p, is also important in
regulating the conversion of phosphatidylserine to
phosphatidylethanolamine at the ER and Golgi interface.
Mammalian PI4KIIIalpha is highly expressed in the
nervous system.
Length = 311
Score = 29.6 bits (67), Expect = 7.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 652 NILIDRDGHIKLTDFGLC 669
NI+ID DGHI DFG
Sbjct: 171 NIMIDDDGHIIHIDFGFI 188
>gnl|CDD|215496 PLN02918, PLN02918, pyridoxine (pyridoxamine) 5'-phosphate oxidase.
Length = 544
Score = 29.9 bits (67), Expect = 7.5
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 147 LIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWS 206
L+ P PPPP +S+S+ S SPTQ + P P Q
Sbjct: 13 LLQSLLPLPISPPPP-HSSSLSSSPSPTQR-----FLTPSQGSRLPPRRRALCTKSQDPR 66
Query: 207 SRQAKTQPVVI--MQSVKSTPV 226
R+A VI MQ S P+
Sbjct: 67 WRRAMASLAVIPNMQDSGSPPL 88
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 29.7 bits (67), Expect = 8.0
Identities = 33/210 (15%), Positives = 53/210 (25%), Gaps = 27/210 (12%)
Query: 158 PPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVI 217
PP + S + + P +P +R P
Sbjct: 55 YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELP---------------- 98
Query: 218 MQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQALAT 277
TPV + A +P S+S + Q P P E S + +
Sbjct: 99 ---PGPTPVPPGGFRGASSPRLGAD-STSPRFLYQVNFPVILAPIGESNSSSEELSEEEE 154
Query: 278 SRVATISIPESNTTTTTTTPA----HPLLQRKFSPGDSRSESPASASSTESRTPPLPPTT 333
S P H +R G ++ + S + L
Sbjct: 155 HSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGLTKKAARKRKGSFVFKPSQL---K 211
Query: 334 SSSVNNKNMTNGTGGGRTYKINHQSPIPER 363
S + KN+ + T Q P+P
Sbjct: 212 ELSGSLKNLLHLDDSAETDPATRQVPVPVH 241
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 29.6 bits (66), Expect = 8.1
Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 26/184 (14%)
Query: 158 PPPPS----YSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRP---APLQAWSSRQA 210
PP P Y ++SRQ ++P+ S G +P + P + +QA RQ
Sbjct: 76 PPKPEERWRYIKELESRQPGVRAPTEP--SAGGEVKTPEQLTPEQRQLLEQMQA-DMRQQ 132
Query: 211 KTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYAS 270
TQ V + + + TP Q+ ++Q+Q+Q Q +
Sbjct: 133 PTQLVEVPWN-EQTPEQR---------------QQTLQRQRQAQQLAEQQRLAQQSRTTE 176
Query: 271 TMQALATSRVATISIPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASASSTESRTPPLP 330
T + + + P +P + ++S ++ +R P
Sbjct: 177 QSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQAAPVTRAADAP 236
Query: 331 PTTS 334
T+
Sbjct: 237 KPTA 240
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 29.6 bits (67), Expect = 9.0
Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 125 LYYSFQDKDNLYFVMDYIP-GEKLIPYPSPAAAPPPPPSYSASIQSRQSPTQSPSSGIYS 183
+ Y+ ++ F +Y+P GE+L+ Y + +
Sbjct: 23 VAYATKNDKFRDFFTEYVPYGEELVDY-----------------------LEEEDPTLRD 59
Query: 184 GPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQSVKSTPVQKPSLQTAIAPTSPPSY 243
S S P ++ S + + + A T+P S
Sbjct: 60 PQISVVSSVTKLSKGPKDEPKQVKIPRQSG-----LSEEVAEAEAKATSVAAEATTPKSI 114
Query: 244 SSSIQQQQQKPQPPSPVPTTEP 265
++ ++ + ++P
Sbjct: 115 QELVEALEELLEELLKETASDP 136
>gnl|CDD|184256 PRK13700, PRK13700, conjugal transfer protein TraD; Provisional.
Length = 732
Score = 29.5 bits (66), Expect = 9.0
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 14/125 (11%)
Query: 157 PPPPPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQA-WSSRQAKTQPV 215
P P P+ S++ + P +P P I P L A ++R+A+ +
Sbjct: 550 PGPYPAVKLSLKYQARPKVAPEF----------IPRDINPEMENRLSAVLAAREAEGR-- 597
Query: 216 VIMQSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPPSPVPTTEPPSYASTMQAL 275
M S+ V + + + P QQ QQ QP PV + +
Sbjct: 598 -QMASLFEPDVPEVASGEDVTQAEQPQQPQQPQQPQQPQQPQQPVSPVINDKKSDAGVNV 656
Query: 276 ATSRV 280
+
Sbjct: 657 PAGGI 661
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 29.9 bits (67), Expect = 9.2
Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 23/97 (23%)
Query: 285 IPESNTTTTTTTPAHPLLQRKFSPGDSRSESPASAS-----STESRTPPLP-PTTSSSVN 338
+PE+ T D SA + + + P T S
Sbjct: 2638 VPENVEYPALATQG---------DQDGFVSKVGSAMKYKPPNVTAMAQSIVQPDTQKSSI 2688
Query: 339 NKNMTNGTGGGRTYKINHQS--------PIPERKHMT 367
K G RT +++ P R H T
Sbjct: 2689 KKKTDIRLAGYRTMPADNRQKGNGLRHKPKTGRSHTT 2725
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 29.2 bits (66), Expect = 9.8
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 644 IHRDIKPDNILIDRDGHIK-LTDFGLC 669
IH D+ PDN+L D D + DF
Sbjct: 200 IHGDLHPDNVLFDDDTDVSGFIDFDDA 226
>gnl|CDD|218693 pfam05687, DUF822, Plant protein of unknown function (DUF822).
This family consists of the N terminal regions of
several plant proteins of unknown function.
Length = 151
Score = 28.6 bits (64), Expect = 9.8
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 160 PPSYSASIQSRQSPTQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWSSRQAKTQPVVIMQ 219
P S S T SP S P S+ PSP+P +P + + + I
Sbjct: 75 PLERMEGAGS--SATASPCSSYQLSPVSSAFPSPVPSYSASPASSSFPSPSSLDSIPISS 132
Query: 220 SVKSTPV 226
+ P
Sbjct: 133 AASLLPW 139
>gnl|CDD|219833 pfam08418, Pol_alpha_B_N, DNA polymerase alpha subunit B
N-terminal. This is the eukaryotic DNA polymerase alpha
subunit B N-terminal domain which is involved in complex
formation. Also see pfam04058.
Length = 239
Score = 28.9 bits (65), Expect = 9.9
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 152 SPAAAPPPPPSYSASIQSRQSP-----TQSPSSGIYSGPGSTGSPSPIPPTRPAPLQAWS 206
SP+AAP P SA SR +P T +P G G S + + + +
Sbjct: 135 SPSAAPSTPSPNSAKFSSRSNPGEVVETLNPHLGQTPEGGGPDSDPKVKLSANFDAKKYK 194
Query: 207 SR 208
R
Sbjct: 195 YR 196
>gnl|CDD|216412 pfam01285, TEA, TEA/ATTS domain family.
Length = 424
Score = 29.4 bits (66), Expect = 10.0
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 219 QSVKSTPVQKPSLQTAIAPTSPPSYSSSIQQQQQKPQPP-SPVPTTEPPSYASTMQALAT 277
Q + PS +T+I P S Y S P P PP QA +
Sbjct: 144 QHLFYIIPGGPSWRTSIKPFSSSHYGSHNSSAYSDHLRPLQPYSGELPPPLGPNWQASNS 203
Query: 278 SRV 280
++
Sbjct: 204 KKI 206
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,088,867
Number of extensions: 4629834
Number of successful extensions: 9587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7416
Number of HSP's successfully gapped: 1339
Length of query: 925
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 819
Effective length of database: 6,236,078
Effective search space: 5107347882
Effective search space used: 5107347882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.6 bits)