BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4002
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 36/229 (15%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS+Q D + + RL E T + + L + I +G ++ KA++I
Sbjct: 34 FELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 93
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
+ +L YN ++P + L KLPGVG K A++ ++ A+G+
Sbjct: 94 QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAFGV----------------- 136
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P + VD HV R+S RLG+ + + + K L +P+ W
Sbjct: 137 -------------------PAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEW 177
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKKR 376
S +H ++ FG+ CK+Q P C +C LC +GKK + +R +K+ ++
Sbjct: 178 SITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRKREEKAANQK 226
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 36/229 (15%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS+Q D + + RL E T + + L + I +G ++ KA++I
Sbjct: 34 FELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 93
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
+ +L YN ++P + L KLPGVG K A++ ++ A+G+
Sbjct: 94 QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGV----------------- 136
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P + VD HV R+S RLG+ + + + K L +P+ W
Sbjct: 137 -------------------PAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEW 177
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKKR 376
S +H ++ FG+ CK+Q P C +C LC +GKK + +R +K+ ++
Sbjct: 178 SITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRKREEKAANQK 226
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To
A Resolution Of 1.85 Angstrom
Length = 211
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS+Q D + A +L T + + + I +G + +KA++I
Sbjct: 30 FELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
IL + +N ++P L LPGVG K A++ +N A+G
Sbjct: 90 IKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFG------------------ 131
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P + VD H+ R+ +R + K E ++L +P
Sbjct: 132 ------------------WPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFK 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ +H L+ G+ C +++P C +C+ +DLC
Sbjct: 173 VDCHHWLILHGRYTCIARKPRCGSCIIEDLC 203
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 41/232 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ E + + T+E + + ED + K +G++ ++ +++
Sbjct: 40 YKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY-SRVRNL 98
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
A +K Y +P+ + +L GVGP ++ A+G+
Sbjct: 99 HAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGV----------------- 141
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P+ VD +V R+ RL TRK E + E +
Sbjct: 142 -------------------PEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMA 182
Query: 328 SE----VNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKK 375
E N L+ G +C +RPSC C + C + +AE + KK
Sbjct: 183 YENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKK 234
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 51/237 (21%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ E + + T+E + + ED + K +G++ ++ +++
Sbjct: 29 YKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY-SRVRNL 87
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
A +K Y +P+ + +L GVGP ++ A+G+
Sbjct: 88 HAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGV----------------- 130
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPED-----TRKELESWL 322
P+ VD +V R+ RL F +D TRK E +
Sbjct: 131 -------------------PEPAVDGNVMRVLSRL-----FLVTDDIAKCSTRKRFEQIV 166
Query: 323 PESLWSE----VNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKK 375
E + E N L+ G +C +RPSC C + C + +AE + KK
Sbjct: 167 REIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKK 223
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 41/232 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ E + + T+E + + ED + K +G++ ++ +++
Sbjct: 40 YKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY-SRVRNL 98
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
A +K Y +P+ + +L GVGP ++ A+G
Sbjct: 99 HAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYG------------------ 140
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
+P+ V+ +V R+ RL TRK E + E +
Sbjct: 141 ------------------VPEPAVNGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMA 182
Query: 328 SE----VNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKK 375
E N L+ G +C +RPSC C + C + +AE + KK
Sbjct: 183 YENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKK 234
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 51/237 (21%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ E + + T+E + + ED + K +G++ ++ +++
Sbjct: 40 YKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY-SRVRNL 98
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
A +K Y +P+ + +L GVGP ++ A+G
Sbjct: 99 HAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYG------------------ 140
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPED-----TRKELESWL 322
+P+ V+ +V R+ RL F +D TRK E +
Sbjct: 141 ------------------VPEPAVNGNVMRVLSRL-----FLVTDDIAKCSTRKRFEQIV 177
Query: 323 PESLWSE----VNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKK 375
E + E N L+ G +C +RPSC C + C + +AE + KK
Sbjct: 178 REIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKK 234
>pdb|3N5N|X Chain X, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
pdb|3N5N|Y Chain Y, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
Length = 287
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 46/233 (19%)
Query: 133 WDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGK 192
W A ++ + R Y V +S ++ QT+ + T++++ + S + + +
Sbjct: 35 WRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQ 94
Query: 193 LIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKL-PGVGPKMAHLCMNHAWGIV 251
L +G++ ++ + ++ + + + +P T E L +L PGVG A + A+G
Sbjct: 95 LWAGLGYY-SRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQA 153
Query: 252 TGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTP 311
TG+ VD +V R+ R+ + P
Sbjct: 154 TGV------------------------------------VDGNVARVLCRV--RAIGADP 175
Query: 312 EDTRKELESW-LPESLW-----SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
T + W L + L + N + G +C QRP C C + LC
Sbjct: 176 SSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLC 228
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 41/189 (21%)
Query: 179 IENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPK 238
E+I T + + K I +G +A+ +K + ++ +Y +P + + LPGVG
Sbjct: 67 FEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKY 126
Query: 239 MAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRI 298
M A+G KK VD + R+
Sbjct: 127 TCAAVMCLAFG----------------------------------KKAAM--VDANFVRV 150
Query: 299 SHRLGWTKVFKTPEDTRKEL----ESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLN 354
+R + ++ K L E+ +P + N L+ F IC ++P CE C
Sbjct: 151 INRY-FGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGM 209
Query: 355 KDLCPQGKK 363
LC +K
Sbjct: 210 SKLCSYYEK 218
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 82/223 (36%), Gaps = 57/223 (25%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
A+ + + P T E + LPGVG A ++ + G PIL +
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLG---------KHFPILDGN 140
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
R++ + +C + +S GW +KE+E+ LW
Sbjct: 141 VRRV-------LARC-------------YAVS---GW--------PGKKEVEN----KLW 165
Query: 328 S------------EVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
S N ++ G IC +P C C ++ C
Sbjct: 166 SLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
A+ + + P T E + LPGVG A ++ + G
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLG 131
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
A+ + + P T E + LPGVG A ++ + G
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLG 131
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
A+ + + P T E + LPGVG A ++ + G
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLG 131
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
A+ + + P T E + LPGVG A ++ + G
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLG 131
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
A+ + + P T E + LPGVG A ++ + G
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLG 131
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
A+ + + P T E + LPGVG A ++ + G
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLG 131
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
A+ + + P T E + LPGVG A ++ + G
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLG 131
>pdb|3VDP|A Chain A, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|B Chain B, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|C Chain C, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|D Chain D, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
Length = 212
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 218 YNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESR---QPILSPSSRQISRS 274
Y+ + IE L KLPG+GPK A A+ I+ + DE R Q I+ +++ R
Sbjct: 17 YSTSVAKLIEELSKLPGIGPKTAQ---RLAFFIIN-MPLDEVRSLSQAII--EAKEKLRY 70
Query: 275 ELICVRKCEKKIPQLCVD 292
IC +K++ +C D
Sbjct: 71 CKICFNITDKEVCDICSD 88
>pdb|1PU6|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU6|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU7|A Chain A, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU7|B Chain B, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU8|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
pdb|1PU8|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
Length = 218
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIEN--------ICNTSEDVLGKLI 194
P ++ L+ +L+ TK E ++ LK + +EN I L + +
Sbjct: 26 PNALKFEALLGAVLTQNTKFEAVLKSLENLK-NAFILENDDEINLKKIAYIEFSKLAECV 84
Query: 195 IPVGFWKTKAKH-IKMASDILK-----KNYNNDIPNTIELLCKLPGVGPKMAHLCMNHA 247
P GF+ KAK I ++ +ILK +N+ ++ T E L G+G + A + +A
Sbjct: 85 RPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEV--TREWLLDQKGIGKESADAILCYA 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,873,892
Number of Sequences: 62578
Number of extensions: 509509
Number of successful extensions: 1238
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 45
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)