BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4002
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/268 (50%), Positives = 163/268 (60%), Gaps = 36/268 (13%)
Query: 96 DENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLM 155
D K WEP +W++ L NIR MR DAPVD +G +H + P+VRRY VL+SLM
Sbjct: 66 DAEPLKVPVWEPQNWQQQLANIRIMRSKKDAPVDQLGAEHCYDASAPPKVRRYQVLLSLM 125
Query: 156 LSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILK 215
LSSQTKD+V AM RL+ GLT+E+I T +D LG+LI PVGFW+ K K+IK + IL+
Sbjct: 126 LSSQTKDQVTAGAMQRLRARGLTVESILQTDDDTLGRLIYPVGFWRNKVKYIKQTTAILQ 185
Query: 216 KNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSE 275
+ Y DIP ++ L LPGVGPKMAHL M AWG ++GI
Sbjct: 186 QRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIA-------------------- 225
Query: 276 LICVRKCEKKIPQLCVDVHVHRISHRLGWT-KVFKTPEDTRKELESWLPESLWSEVNHLL 334
VD HVHRI++RL WT K+ KTPE+TRK LE WLP LWSEVN LL
Sbjct: 226 ---------------VDTHVHRIANRLRWTKKMTKTPEETRKNLEEWLPRVLWSEVNGLL 270
Query: 335 VGFGQQICKSQRPSCETCLNKDLCPQGK 362
VGFGQQIC P C+ CLNK LCP +
Sbjct: 271 VGFGQQICLPVHPRCQACLNKALCPAAQ 298
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1
Length = 305
Score = 268 bits (685), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 161/259 (62%), Gaps = 36/259 (13%)
Query: 105 WEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEV 164
W+P W++ L+NIR MR DAPVD +G +H + +P+VRRY VL+SLMLSSQTKD+V
Sbjct: 80 WQPQDWRQQLDNIRTMRSGKDAPVDQLGAEHCFDPSASPKVRRYQVLLSLMLSSQTKDQV 139
Query: 165 NHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPN 224
AM RL+ GLT+++I T + LG LI PVGFW++K K+IK S IL++ Y+ DIP
Sbjct: 140 TAGAMQRLRARGLTVDSILQTDDSTLGALIYPVGFWRSKVKYIKQTSAILQQRYDGDIPA 199
Query: 225 TIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEK 284
++ L LPGVGPKMAHL M AWG V+GI
Sbjct: 200 SVAELVALPGVGPKMAHLAMAVAWGTVSGI------------------------------ 229
Query: 285 KIPQLCVDVHVHRISHRLGWT-KVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICK 343
VD HVHRI++RL WT K K+PE+TR+ LE WLP LWSE+N LLVGFGQQ C
Sbjct: 230 -----AVDTHVHRIANRLRWTKKATKSPEETRRALEEWLPRELWSEINGLLVGFGQQTCL 284
Query: 344 SQRPSCETCLNKDLCPQGK 362
RP C+ CLN+ LCP +
Sbjct: 285 PIRPRCQACLNRALCPAAR 303
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2
Length = 312
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 156/259 (60%), Gaps = 36/259 (13%)
Query: 105 WEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEV 164
WEP W++ L NIR MR DAPVD +G +H + P+VRRY VL+SLMLSSQTKD+V
Sbjct: 87 WEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQV 146
Query: 165 NHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPN 224
AM RL+ GLT+++I T + LGKLI PVGFW++K K+IK S IL+++Y DIP
Sbjct: 147 TAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIPA 206
Query: 225 TIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEK 284
++ L LPGVGPKMAHL M AWG V+GI
Sbjct: 207 SVAELVALPGVGPKMAHLAMAVAWGTVSGI------------------------------ 236
Query: 285 KIPQLCVDVHVHRISHRLGWT-KVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICK 343
VD HVHRI++RL WT K K+PE+TR LE WLP LW E+N LLVGFGQQ C
Sbjct: 237 -----AVDTHVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCL 291
Query: 344 SQRPSCETCLNKDLCPQGK 362
P C CLN+ LCP +
Sbjct: 292 PVHPRCHACLNQALCPAAQ 310
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 214 bits (546), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 146/250 (58%), Gaps = 36/250 (14%)
Query: 110 WKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAM 169
W+ + IR+MRK APVD MG A+ AP V R+ VL++LMLSSQT+DEVN AAM
Sbjct: 30 WRRDVELIRKMRKDMIAPVDTMGCHKLADPLAAPPVHRFQVLVALMLSSQTRDEVNAAAM 89
Query: 170 GRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELL 229
RLK+HGL+I I L ++ PVGF+K KA +++ + ILK +++ DIP++++ L
Sbjct: 90 KRLKDHGLSIGKILEFKVPDLETILCPVGFYKRKAVYLQKTAKILKDDFSGDIPDSLDGL 149
Query: 230 CKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQL 289
C LPGVGPKMA+L M AWG GI
Sbjct: 150 CALPGVGPKMANLVMQIAWGECVGIA---------------------------------- 175
Query: 290 CVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSC 349
VD HVHRIS+RLGW K TPE T+K LE LP+S W +NHLLVGFGQ C+ RP C
Sbjct: 176 -VDTHVHRISNRLGWIKT-STPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKC 233
Query: 350 ETCLNKDLCP 359
TCL + CP
Sbjct: 234 GTCLCRFTCP 243
>sp|Q09907|NTH1_SCHPO Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nth1 PE=1 SV=1
Length = 355
Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 137/263 (52%), Gaps = 42/263 (15%)
Query: 107 PAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNH 166
P +W+EV + I +M+ APVD G H+ P+ R+ L++LMLSSQTKD V
Sbjct: 9 PENWREVYDEICKMKAKVVAPVDVQGC-HTLGERNDPKKFRFQTLVALMLSSQTKDIVLG 67
Query: 167 AAMGRLKEH---GLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP 223
M LKE GL +E+I N E L KLI VGF K ++K + IL + + DIP
Sbjct: 68 PTMRNLKEKLAGGLCLEDIQNIDEVSLNKLIEKVGFHNRKTIYLKQMARILSEKFQGDIP 127
Query: 224 NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCE 283
+T+E L LPGVGPKM +LCM+ AW GIG
Sbjct: 128 DTVEDLMTLPGVGPKMGYLCMSIAWNKTVGIG---------------------------- 159
Query: 284 KKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICK 343
VDVHVHRI + L W KT E TR L+SWLP+ LW E+NH LVGFGQ IC
Sbjct: 160 -------VDVHVHRICNLLHWCNT-KTEEQTRAALQSWLPKELWFELNHTLVGFGQTICL 211
Query: 344 SQRPSCETCL--NKDLCPQGKKE 364
+ C+ C +K LCP KE
Sbjct: 212 PRGRRCDMCTLSSKGLCPSAFKE 234
>sp|Q08214|NTG2_YEAST DNA base excision repair N-glycosylase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NTG2 PE=1
SV=1
Length = 380
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 134/287 (46%), Gaps = 60/287 (20%)
Query: 107 PAHWKEVLNNIREMRKHGDAPVDAMGWDH------------SANVDIAPEVRRYHVLISL 154
P + + N +R MR PVDAMG S VD P+ R LI
Sbjct: 98 PESFLPIYNRVRLMRSKVKTPVDAMGCSMIPVLVSNKCGIPSEKVD--PKNFRLQFLIGT 155
Query: 155 MLSSQTKDEVNHAAMGRLKEH---------GLTIENICNTSEDVLGKLIIPVGFWKTKAK 205
MLS+QT+DE A + E+ G+T++ + E VL LI V F+ KA
Sbjct: 156 MLSAQTRDERMAQAALNITEYCLNTLKIAEGITLDGLLKIDEPVLANLIRCVSFYTRKAN 215
Query: 206 HIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILS 265
IK + +L N+++DIP IE + LPGVGPKM +L + WG++ GI
Sbjct: 216 FIKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLIAGI----------- 264
Query: 266 PSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVF--KTPEDTRKELESWLP 323
CVDVHVHR+ W KT E TRKEL+ WLP
Sbjct: 265 ------------------------CVDVHVHRLCKMWNWVDPIKCKTAEHTRKELQVWLP 300
Query: 324 ESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVK 370
SLW E+N +LVGFGQ IC ++ C+ CL D+C ++L E K
Sbjct: 301 HSLWYEINTVLVGFGQLICMARGKRCDLCLANDVCNARNEKLIESSK 347
>sp|P31378|NTG1_YEAST Mitochondrial DNA base excision repair N-glycosylase 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NTG1 PE=1 SV=1
Length = 399
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 142/300 (47%), Gaps = 68/300 (22%)
Query: 107 PAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIA-----------PEVRRYHVLISLM 155
P ++E +R +R APVD +G S V +A P R VL+ +M
Sbjct: 93 PYKFQETYARMRVLRSKILAPVDIIG-GSSIPVTVASKCGISKEQISPRDYRLQVLLGVM 151
Query: 156 LSSQTKDEVNHAAMGRL---------KEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKH 206
LSSQTKDEV AM + E G+T+E + +E L +LI VGF KAK+
Sbjct: 152 LSSQTKDEVTAMAMLNIMRYCIDELHSEEGMTLEAVLQINETKLDELIHSVGFHTRKAKY 211
Query: 207 IKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSP 266
I IL+ +++D+P TI L LPGVGPKMA+L + AWG + GI
Sbjct: 212 ILSTCKILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKIEGI------------ 259
Query: 267 SSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKV--FKTPEDTRKELESWLPE 324
CVDVHV R++ W KTP+ TR +L++WLP+
Sbjct: 260 -----------------------CVDVHVDRLTKLWKWVDAQKCKTPDQTRTQLQNWLPK 296
Query: 325 SLWSEVNHLLVGFGQQICKSQR----------PSCETCLNKDLCPQGKKELAERVKKSPK 374
LW+E+N LLVGFGQ I KS+ + L+ DL Q KE+ + + PK
Sbjct: 297 GLWTEINGLLVGFGQIITKSRNLGDMLQFLPPDDPRSSLDWDLQSQLYKEIQQNIMSYPK 356
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 130/257 (50%), Gaps = 53/257 (20%)
Query: 117 IREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKE-- 174
I+ RK +PVD MG + + E RR+H+L+SL+LSSQTKDEV + AM RL++
Sbjct: 19 IKMQRKDIVSPVDTMGCSITPSCRTEEE-RRFHILVSLLLSSQTKDEVTYEAMARLRKLL 77
Query: 175 -----------HGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP 223
GLTIE + N+ + + I VGF KA ++K ++IL++ +P
Sbjct: 78 PESAATDGEARGGLTIERVANSDVKHINECIKKVGFHNRKAANLKKIAEILRE---KGLP 134
Query: 224 NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCE 283
++ L LPG+G KMA L M+HA GI
Sbjct: 135 REMKDLISLPGIGNKMALLYMSHACNRTVGIS---------------------------- 166
Query: 284 KKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICK 343
VD HVHRIS+R+G + + E TR+ELE +P W +N++LVGFGQ IC
Sbjct: 167 -------VDTHVHRISNRIGLVRT-RDVESTRRELERVVPRKEWKTINNILVGFGQTICV 218
Query: 344 SQRPSCETCLNKDLCPQ 360
++RP CE C + CP
Sbjct: 219 AKRPRCEECCIRGRCPS 235
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 114/228 (50%), Gaps = 41/228 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ VLIS +LS +T+DE A +L E T + + + L LI G ++ KA+ I
Sbjct: 23 FRVLISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYDLIKESGMYRQKAERI 82
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
S IL + Y +P+++E L KLPGVG K A++ + W G K
Sbjct: 83 VEISRILVEKYGGRVPDSLEELLKLPGVGRKTANIVL---W---VGFKK----------- 125
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P L VD HVHRIS+RLGW K +TPE+T + L+ LPE LW
Sbjct: 126 -------------------PALAVDTHVHRISNRLGWVKT-RTPEETEEALKKLLPEDLW 165
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCP----QGKKELAERVKK 371
+N +V FG++ICK Q P CE C K+ C +GK E+ R ++
Sbjct: 166 GPINGSMVEFGRRICKPQNPLCEECFLKNHCEFYRRRGKGEVRNRTER 213
>sp|Q58030|Y613_METJA Putative endonuclease MJ0613 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0613 PE=3 SV=2
Length = 344
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 121/227 (53%), Gaps = 42/227 (18%)
Query: 140 DIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGF 199
+IA + + VLIS ++S++TKDEV +L + ++++ N E+ L LI P GF
Sbjct: 19 EIAKDKDPFKVLISTIISARTKDEVTEEVSKKLFKEIKDVDDLLNIDEEKLADLIYPAGF 78
Query: 200 WKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDES 259
+K KAK++K + ILK+NYN +P+++E L KLPGVG K A+L + A+ KD
Sbjct: 79 YKNKAKNLKKLAKILKENYNGKVPDSLEELLKLPGVGRKTANLVITLAF------NKD-- 130
Query: 260 RQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKV-FKTPEDTRKEL 318
+CVD HVHRI +R W V +TPE+T EL
Sbjct: 131 ----------------------------GICVDTHVHRICNR--WEIVDTETPEETEFEL 160
Query: 319 ESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLN--KDLCPQGKK 363
LP+ W +N+LLV FG++IC S + C+ C K+ CP +K
Sbjct: 161 RKKLPKKYWKVINNLLVVFGREIC-SSKSKCDKCFKEIKEKCPYYEK 206
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L+++MLS+Q D + A L E T E I ED L K I +G + +KAK+I
Sbjct: 30 FTLLVAVMLSAQATDISVNLATKSLFETYDTTEKILELGEDGLKKYIKSIGLFNSKAKNI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
IL NY + +PN + L KLPGVG K A++ +N +G
Sbjct: 90 IALCKILISNYQSSVPNDFKELIKLPGVGRKTANVVLNCLFG------------------ 131
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
+P + VD HV R++ R+G + +PE KEL + E
Sbjct: 132 ------------------MPTMAVDTHVFRVAKRIGLARG-NSPEIVEKELLQIINEKWL 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ +H L+ G+ ICK+++P C+ C K+ C
Sbjct: 173 THAHHWLILHGRYICKARKPDCDICPIKEYC 203
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L++++LS++ D + L E T E I E+ L K I +G + +KAK+I
Sbjct: 30 FTLLVAVILSARATDISVNLVTKHLFETYNTPEKILALGEEGLKKYIKSIGLFNSKAKNI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
+ IL KNY IPN + L KLPGVG K A++ +N
Sbjct: 90 IASCQILIKNYQASIPNDFKELVKLPGVGRKTANVVLN---------------------- 127
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
C +P + VD HV R+S R+G K T KEL + E
Sbjct: 128 --------------CLFAMPTMAVDTHVFRVSKRIGLAKG-NTTVIVEKELLQIIDEKWL 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ +H LV G+ ICK+++PSC C K+ C
Sbjct: 173 THAHHWLVLHGRYICKARKPSCRICHIKEYC 203
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L++++LS+Q D + A L T E I E+ L K I +G + +KAK+I
Sbjct: 30 FTLLVAVILSAQATDISVNLATKSLFATYDTPEKILELGEEGLKKYIKSIGLFNSKAKNI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
IL NY +PN + L KLPGVG K A++ +N +G
Sbjct: 90 IALCKILISNYQASVPNDFKALIKLPGVGRKTANVVLNCLFG------------------ 131
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
+P + VD HV R+++R+G K TPE EL +
Sbjct: 132 ------------------MPTMAVDTHVFRVANRIGLAKG-DTPEIVENELLQIIDTKWL 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ +H L+ G+ ICK+++P C+ C K+ C
Sbjct: 173 THAHHWLILHGRYICKARKPDCDICPIKEYC 203
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L++++LS++ D + A L E T E E+ L K I +G + +KAK+I
Sbjct: 30 FTLLVAVILSARATDISVNLATKHLFETYNTPEKFLELGEEGLKKYIKSIGLFNSKAKNI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
IL KNY IPN + L KLPGVG K A++ +N
Sbjct: 90 IALCQILIKNYQTSIPNNFKELVKLPGVGRKTANVVLN---------------------- 127
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
C +P + VD HV R+S R+G K T KEL + E
Sbjct: 128 --------------CLFAMPTMAVDTHVFRVSKRIGLAKG-NTAAIVEKELLQIIDEKWL 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ +H L+ G+ ICK+++P C C K+ C
Sbjct: 173 TYAHHWLILHGRYICKARKPGCNICPIKEYC 203
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 36/216 (16%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +++++ LS+Q D + + L + E+ + L + I +G ++ KAK+I
Sbjct: 31 FELVVAVALSAQCTDALVNRVTKTLFQKYKRPEDYLAVPLEELQQDIKSIGLYRNKAKNI 90
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
+ S ++ ++Y ++P + L KLPGVG K A++ ++ A+G+
Sbjct: 91 QKLSKMIIEDYGGEVPRDRDELVKLPGVGRKTANVVVSVAFGV----------------- 133
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P + VD HV R+S RLG + + + K L +P+ W
Sbjct: 134 -------------------PAIAVDTHVERVSKRLGICRWKDSVLEVEKTLMRKVPKEDW 174
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKK 363
S +H L+ FG+ CK+Q P C C LC +G+K
Sbjct: 175 SVTHHRLIFFGRYHCKAQSPRCAECPLLSLCREGQK 210
>sp|P73715|END3_SYNY3 Endonuclease III OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=nth PE=3 SV=1
Length = 219
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 149 HVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIK 208
+L++ +LS+Q DE + L + + + +LI GF++ KAK+I+
Sbjct: 40 QLLVATILSAQCTDERVNKVTPALFQRYPDANALAYGDRQEIEELIHSTGFFRNKAKNIQ 99
Query: 209 MASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSS 268
A + + ++ ++P +E L LPGV K A++ + HA+GI+ G+
Sbjct: 100 GACRKIVEEFDGEVPQRMEELLTLPGVARKTANVVLAHAFGILAGVT------------- 146
Query: 269 RQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWS 328
VD HV R+S RLG TK P ++L +P+ W
Sbjct: 147 ----------------------VDTHVKRLSQRLGLTKA-TDPIRIERDLMKLIPQPDWE 183
Query: 329 EVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGK 362
+ ++ G+ +C +++P C C LCP +
Sbjct: 184 NFSIHIIYHGRAVCAARKPLCGECQLAHLCPSAQ 217
>sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2
Length = 279
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L++ +LS+QT D +AA L + +E L +L+ GF++ KA I
Sbjct: 45 FELLVATVLSAQTTDVRVNAATPALFARFPDAHAMAAATEPELQELVRSTGFYRNKASAI 104
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
S L ++ ++P +E L LPGVG K A + + +A+G
Sbjct: 105 LRLSQELVGRHDGEVPARLEDLVALPGVGRKTAFVVLGNAFG------------------ 146
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P + VD H R++ RLG+T + + P W
Sbjct: 147 ------------------QPGITVDTHFGRLARRLGFTDETDPGKGRARRGRPVPPARDW 188
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQ 360
+ ++H L+ G+++C ++RP+C C CP
Sbjct: 189 TMLSHRLIFHGRRVCHARRPACGRCPIARWCPS 221
>sp|P63540|END3_MYCTU Endonuclease III OS=Mycobacterium tuberculosis GN=nth PE=3 SV=1
Length = 245
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 152 ISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMAS 211
++ +LS+Q+ D+ + L T + L LI P GF++ KA +
Sbjct: 45 VATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLG 104
Query: 212 DILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQI 271
L + + ++P T++ L LPGVG K A++ + +A+G
Sbjct: 105 QALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFG---------------------- 142
Query: 272 SRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVN 331
IP + VD H R+ R WT + P + + + W+ ++
Sbjct: 143 --------------IPGITVDTHFGRLVRRWRWTTA-EDPVKVEQAVGELIERKEWTLLS 187
Query: 332 HLLVGFGQQICKSQRPSCETCLNKDLCPQ 360
H ++ G+++C ++RP+C C+ CP
Sbjct: 188 HRVIFHGRRVCHARRPACGVCVLAKDCPS 216
>sp|P63541|END3_MYCBO Endonuclease III OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=nth PE=3 SV=1
Length = 245
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 152 ISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMAS 211
++ +LS+Q+ D+ + L T + L LI P GF++ KA +
Sbjct: 45 VATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLG 104
Query: 212 DILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQI 271
L + + ++P T++ L LPGVG K A++ + +A+G
Sbjct: 105 QALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFG---------------------- 142
Query: 272 SRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVN 331
IP + VD H R+ R WT + P + + + W+ ++
Sbjct: 143 --------------IPGITVDTHFGRLVRRWRWTTA-EDPVKVEQAVGELIERKEWTLLS 187
Query: 332 HLLVGFGQQICKSQRPSCETCLNKDLCPQ 360
H ++ G+++C ++RP+C C+ CP
Sbjct: 188 HRVIFHGRRVCHARRPACGVCVLAKDCPS 216
>sp|O83754|END3_TREPA Endonuclease III OS=Treponema pallidum (strain Nichols) GN=nth PE=3
SV=1
Length = 211
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L++++LS+Q D+ + A L + T + + E+ L I + + TKA+ I
Sbjct: 33 FTLLVAVLLSAQATDKSVNKATAALFDVADTPQAMLALGEERLCSYIRTINLYPTKARRI 92
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
S L + + +P L LPGVG K A++ +N +G
Sbjct: 93 IALSAELIERFAAQVPCDAHALESLPGVGHKTANVVLNMGFG------------------ 134
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
IP + VD H+ R + R+G + +TP ++L P
Sbjct: 135 ------------------IPTIAVDTHILRTAPRIGLSS-GRTPRAVERDLLVVTPREFR 175
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+H ++ G+ C ++RP C C +DLC
Sbjct: 176 MHAHHWILLHGRYTCTARRPRCTECCLRDLC 206
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 59/256 (23%)
Query: 112 EVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGR 171
E+L +RE H P + ++ + +LI+++LS+Q D+ + A +
Sbjct: 8 EILTRLREQNPH---PTTELQYNSP-----------FELLIAVILSAQATDKGVNKATEK 53
Query: 172 LKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI-KMASDILKKNYNNDIPNTIELLC 230
L T + I + D L I +G + +KA++I K D+++K +N ++P E L
Sbjct: 54 LFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEK-HNGEVPENREALE 112
Query: 231 KLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLC 290
L GVG K A++ +N A+G P +
Sbjct: 113 ALAGVGRKTANVVLNTAFG------------------------------------HPTIA 136
Query: 291 VDVHVHRISHRLGWTKVFKTPEDTRKELESWL---PESLWSEVNHLLVGFGQQICKSQRP 347
VD H+ R+ +R F +D K E L P +V+H L+ G+ C +++P
Sbjct: 137 VDTHIFRVCNRTN----FAAGKDVVKVEEKLLKVVPNEFKVDVHHWLILHGRYTCIARKP 192
Query: 348 SCETCLNKDLCPQGKK 363
C +C+ +DLC +K
Sbjct: 193 RCGSCIIEDLCEYKEK 208
>sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nth PE=3 SV=1
Length = 215
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LIS+MLS+QT D + + RL T + + + I +G + K+ +I
Sbjct: 35 FELLISVMLSAQTTDRMVNKTTQRLFGIANTPSGFISIGLHAIRENIRKLGLYNKKSSNI 94
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
+IL K Y +PN E L LPGVG K A++ +N +
Sbjct: 95 LRTCEILLKRYGGKVPNNREDLESLPGVGRKTANVILNVIF------------------- 135
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
K + VD HV R+ +R+G+ K T K+L + +PE
Sbjct: 136 -----------------KKKTIAVDTHVFRLCNRIGFAKG-TTVLTVEKKLLNIVPEKFK 177
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ + G+ IC S+ P C C+ LC
Sbjct: 178 LNFHAWFIMHGRYICTSRVPKCSKCIISSLC 208
>sp|Q8KA16|END3_BUCAP Endonuclease III OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nth PE=3 SV=1
Length = 209
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 37/217 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L+S++LS+++ D + + G L + T ++I + L I +G + TK+ +I
Sbjct: 30 FELLLSVILSAKSTDVMVNKITGTLFQIANTPQSILKLGFNKLRHYIKSIGLYNTKSLNI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
++ ++K YNN +P+ L LPGVG K A++ +N + T
Sbjct: 90 INSAYLIKTKYNNKVPSNRTELESLPGVGRKTANIILNVLFNKNT--------------- 134
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
+ VD HV R+++R G+ K K + K++ +P
Sbjct: 135 ---------------------IAVDTHVFRVANRTGFAKG-KNVIEVEKKMIKIVPSIFK 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKE 364
V+ V G+ +C +++ C+TC + LC KK+
Sbjct: 173 KYVHFWFVLHGRYVCTARQLKCKTCFIEKLCEFDKKK 209
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS+Q D + A +L T + + + I +G + +KA++I
Sbjct: 30 FELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
IL + +N ++P L LPGVG K A++ +N A+G
Sbjct: 90 IKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFG------------------ 131
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P + VD H+ R+ +R + K E ++L +P
Sbjct: 132 ------------------WPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFK 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ +H L+ G+ C +++P C +C+ +DLC
Sbjct: 173 VDCHHWLILHGRYTCIARKPRCGSCIIEDLC 203
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS+Q D + A +L T + + + I +G + +KA++I
Sbjct: 30 FELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
IL + +N ++P L LPGVG K A++ +N A+G
Sbjct: 90 IKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFG------------------ 131
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P + VD H+ R+ +R + K E ++L +P
Sbjct: 132 ------------------WPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFK 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ +H L+ G+ C +++P C +C+ +DLC
Sbjct: 173 VDCHHWLILHGRYTCIARKPRCGSCIIEDLC 203
>sp|Q9CB92|END3_MYCLE Endonuclease III OS=Mycobacterium leprae (strain TN) GN=nth PE=3
SV=2
Length = 245
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 39/210 (18%)
Query: 152 ISLMLSSQTKDE-VNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA 210
++ +LS+Q+ D+ VN + ++ + L I P GF++ KA +
Sbjct: 45 VATILSAQSTDKRVNLTTPAVFARYRSALDYM-QADRAELENFIRPTGFFRNKAASLIRL 103
Query: 211 SDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQ 270
L + ++ ++P+T+ L LPGVG K A++ + +A+GI
Sbjct: 104 GQALVERFDGEVPSTMVDLFTLPGVGRKTANVILGNAFGI-------------------- 143
Query: 271 ISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEV 330
P + VD H R+ R WT + P + + W+ +
Sbjct: 144 ----------------PGITVDTHFGRLVRRWRWTAE-EDPVKVEHAVGELIERDQWTLL 186
Query: 331 NHLLVGFGQQICKSQRPSCETCLNKDLCPQ 360
+H ++ G+++C +++P+C C+ CP
Sbjct: 187 SHRVIFHGRRVCHARKPACGVCVLAKDCPS 216
>sp|P57219|END3_BUCAI Endonuclease III OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nth PE=3 SV=1
Length = 210
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L+S++LS+Q+ D + + L + T E I + L I +G + TKA +I
Sbjct: 30 FELLLSVILSAQSTDFIVNKTTKILFKIANTPETIFLLGLERLKNYIKDIGLYNTKALNI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
S I+ YN+ +PN L LPGVG K A++ +N +
Sbjct: 90 IRTSFIILTKYNSIVPNNRIELESLPGVGRKTANIILNILF------------------- 130
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
K + VD HV R+ +R + K K + ++L +P
Sbjct: 131 -----------------KKKTIAVDTHVFRVCNRTNFAKG-KNVKIVEEKLIKVVPSIFK 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKK 363
+ + G+ IC +++ C CL LC +K
Sbjct: 173 LNFHSWFILHGRYICTARKIKCNICLIFKLCEFKQK 208
>sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1434 PE=3 SV=1
Length = 220
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 41/233 (17%)
Query: 134 DHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIE-NICNTSEDVLGK 192
D+ + + P RY V++ +L+ T + A+ LK L E I N ED L +
Sbjct: 18 DYYGHQNWWPAETRYEVVVGAILTQNTSWKNVERAINNLKMEDLLEEVKILNVDEDKLKE 77
Query: 193 LIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAH-----LCMNHA 247
LI P GF+ KAK +K + + +NY N +MA L +
Sbjct: 78 LIRPAGFYNLKAKRLKNVTKFIVENYGN---------------TEEMAKTDKDTLILRAE 122
Query: 248 WGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKV 307
+ G+GK+ + +L R+ VD + R+ RLG
Sbjct: 123 LLSINGVGKETADSILLYALDRE-----------------SFVVDAYTKRMFSRLGVINE 165
Query: 308 FKTPEDTRKELESWLPESL--WSEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
++ ++ E LP+ L + E + L+V ++ C+ ++ C+ C K+ C
Sbjct: 166 KAKYDEIKEIFEKNLPKDLEIYKEYHALIVEHCKKFCR-KKALCDNCPIKEFC 217
>sp|Q89A45|MUTY_BUCBP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mutY PE=3 SV=1
Length = 351
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 38/231 (16%)
Query: 131 MGWDHSANVDIAP-EVRR--YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSE 187
+ W H P ++++ Y IS ++ QT+ + + + I+ + ++
Sbjct: 11 LNWYHHFGRKTLPWQIKKNPYKTWISEIMLQQTQVKTVIPYYCKFIKRFPNIDTLSDSPL 70
Query: 188 DVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHA 247
D + L +G++ T+A++I + ILK+ +N PN+ + KLPG+G A ++
Sbjct: 71 DSILNLWSGLGYY-TRARNIYKTAKILKQKFNGIFPNSYAEIIKLPGIGKSTAGAILSFG 129
Query: 248 WGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKV 307
+ + + I ++ ++ S I+ + +L W
Sbjct: 130 FNLYSCILDGNIKRVLIRYYSININNKYI-----------------------EKLLW--- 163
Query: 308 FKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
K +ES P ++ N L+ G IC P C C K C
Sbjct: 164 --------KTIESITPIYHTNKFNQALIDIGALICLKSNPKCNICPLKSTC 206
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1
SV=2
Length = 1987
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 267 SSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLP--- 323
S R + + CVR VD +V RI+ R+GW + PE + L P
Sbjct: 1537 SIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYPVLE 1596
Query: 324 ---ESLWS-----------EVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ LW E+++ L+ FG+ C RP+C C + C
Sbjct: 1597 SIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGEC 1645
>sp|Q10159|MYH1_SCHPO A/G-specific adenine DNA glycosylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=myh1 PE=1 SV=1
Length = 461
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPV----G 198
P R Y VL+S ++ QT+ E + E T+ + + +E ++P+ G
Sbjct: 58 PVQRLYEVLVSEIMLQQTRVETVKRYYTKWME---TLPTLKSCAEAEYNTQVMPLWSGMG 114
Query: 199 FWKTKAKHIKMASDILKKNYNNDIPNTIELLCK-LPGVGPKMAHLCMNHAWGIVTGI 254
F+ T+ K + A L K + ++IP T + K +PGVGP A ++ AW TGI
Sbjct: 115 FY-TRCKRLHQACQHLAKLHPSEIPRTGDEWAKGIPGVGPYTAGAVLSIAWKQPTGI 170
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2
Length = 1332
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 208 KMASDILKKNYNNDIPNTIE-LLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSP 266
K+A+ I+K+ NN + I+ L +L H ++ W + + D++++ +LS
Sbjct: 827 KIANIIIKRGMNNMLAERIKAFLNRL-----VKKHGSIDLEW--LRDVPPDKAKEYLLSI 879
Query: 267 SSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLP--- 323
+ + E CVR VD +V RI+ RLGW + P++ + L P
Sbjct: 880 NGLGLKSVE--CVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYPVLE 937
Query: 324 ---ESLW-----------SEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ LW E+++ ++ FG+ C +P+C C K C
Sbjct: 938 SVQKYLWPRLCKLDQKTLYELHYHMITFGKVFCTKVKPNCNACPMKAEC 986
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
Length = 1393
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 278 CVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLP------ESLWS--- 328
CVR VD +V RI+ RLGW + PE + L P + LW
Sbjct: 957 CVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQKYLWPRLC 1016
Query: 329 --------EVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
E+++ ++ FG+ C +P+C C K C
Sbjct: 1017 KLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMKGEC 1054
>sp|P57617|MUTY_BUCAI A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mutY PE=3 SV=1
Length = 350
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 51/257 (19%)
Query: 130 AMGWDH-SANVDIAPEVRR--YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTS 186
+ W H + D+ ++ + Y V IS ++ QT + +A+ K+ L NI + +
Sbjct: 10 VLNWYHKNGRKDLPWQINKTLYTVWISEIMLQQTTVK---SAIPYFKKFILNFPNIKSLN 66
Query: 187 EDVLGKLII---PVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMA--- 240
+ L ++ +G++ +AK+I ++ I+KK Y P+ + +LPG+G A
Sbjct: 67 DSKLDDVLYLWSGLGYY-NRAKNIYKSAQIIKKKYKGIFPDQFSNIIQLPGIGRSTAGAI 125
Query: 241 -HLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRIS 299
L +N + I+ G + + IL R S L+ +K EKK+ +
Sbjct: 126 LSLSLNFFYPILDG-----NVKRIL---VRYYGISGLLKDKKIEKKLWNI---------- 167
Query: 300 HRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETC-LNKDLC 358
+ES P + N ++ G IC S +P C C L K+
Sbjct: 168 ------------------IESITPIHNTGKFNQGMMDIGASICISIKPKCTICPLKKECI 209
Query: 359 PQGKKELAERVKKSPKK 375
Q +K+ + K+ KK
Sbjct: 210 AQIEKKWEKYPLKNIKK 226
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2
Length = 1044
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 278 CVRKCEKKIPQLCVDVHVHRISHRLGWT------------KVFKTPEDTRKELESW---- 321
CVR K VD +V RI+ RLG ++F+ P + W
Sbjct: 597 CVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSMDSIQKYLWPRLC 656
Query: 322 -LPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
LP+ E+++ ++ FG+ C P+C C K C
Sbjct: 657 KLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSEC 694
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 41/189 (21%)
Query: 179 IENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPK 238
E+I T + + K I +G +A+ +K + ++ +Y +P + + LPGVG
Sbjct: 67 FEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKY 126
Query: 239 MAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRI 298
M A+G KK VD + R+
Sbjct: 127 TCAAVMCLAFG----------------------------------KKAAM--VDANFVRV 150
Query: 299 SHRLGWTKVFKTPEDTRKEL----ESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLN 354
+R + ++ K L E+ +P + N L+ F IC ++P CE C
Sbjct: 151 INRY-FGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGM 209
Query: 355 KDLCPQGKK 363
LC +K
Sbjct: 210 SKLCSYYEK 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,099,330
Number of Sequences: 539616
Number of extensions: 6574072
Number of successful extensions: 20416
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 20247
Number of HSP's gapped (non-prelim): 153
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)