Query psy4002
Match_columns 378
No_of_seqs 239 out of 2174
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:54:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 100.0 1.8E-45 6.1E-50 345.3 23.5 207 108-364 8-214 (226)
2 2abk_A Endonuclease III; DNA-r 100.0 8.6E-45 2.9E-49 336.7 21.2 182 144-362 26-207 (211)
3 1kea_A Possible G-T mismatches 100.0 1.4E-44 4.7E-49 338.0 21.3 187 143-365 31-220 (221)
4 1kg2_A A/G-specific adenine gl 100.0 1.3E-44 4.3E-49 338.8 21.1 193 144-373 27-224 (225)
5 3fsp_A A/G-specific adenine gl 100.0 9.4E-44 3.2E-48 354.0 22.1 197 144-377 36-237 (369)
6 3n5n_X A/G-specific adenine DN 100.0 2E-44 6.8E-49 349.4 16.0 187 143-366 45-236 (287)
7 1pu6_A 3-methyladenine DNA gly 100.0 2.1E-34 7.2E-39 268.8 18.0 161 142-340 25-212 (218)
8 3fhf_A Mjogg, N-glycosylase/DN 100.0 7.7E-30 2.6E-34 237.9 11.3 149 145-345 42-197 (214)
9 4b21_A Probable DNA-3-methylad 100.0 4.9E-29 1.7E-33 234.9 16.8 181 108-333 24-222 (232)
10 3s6i_A DNA-3-methyladenine gly 100.0 2.8E-28 9.5E-33 229.0 16.0 184 106-335 11-213 (228)
11 2yg9_A DNA-3-methyladenine gly 100.0 2.8E-28 9.6E-33 228.5 13.1 178 106-333 24-212 (225)
12 2h56_A DNA-3-methyladenine gly 100.0 1.6E-28 5.4E-33 231.2 10.5 187 111-341 20-218 (233)
13 3fhg_A Mjogg, N-glycosylase/DN 99.9 5.7E-28 2E-32 223.6 10.5 151 143-344 29-189 (207)
14 4e9f_A Methyl-CPG-binding doma 99.9 1.4E-26 4.6E-31 207.4 12.5 117 145-302 29-145 (161)
15 3n0u_A Probable N-glycosylase/ 99.9 1.4E-26 4.8E-31 216.6 10.5 152 143-336 46-211 (219)
16 3i0w_A 8-oxoguanine-DNA-glycos 99.9 3.8E-25 1.3E-29 214.4 18.1 154 144-340 112-287 (290)
17 2xhi_A N-glycosylase/DNA lyase 99.9 3.2E-24 1.1E-28 213.8 16.6 155 144-337 149-338 (360)
18 1mpg_A ALKA, 3-methyladenine D 99.9 6.2E-24 2.1E-28 204.6 17.1 146 145-335 111-274 (282)
19 2jhn_A ALKA, 3-methyladenine D 99.9 1E-23 3.4E-28 204.6 12.8 149 145-335 116-284 (295)
20 2jg6_A DNA-3-methyladenine gly 96.1 0.057 2E-06 49.0 11.6 101 146-246 30-168 (186)
21 2ofk_A 3-methyladenine DNA gly 95.7 0.11 3.6E-06 47.1 11.7 101 146-246 30-168 (183)
22 4glx_A DNA ligase; inhibitor, 90.1 0.5 1.7E-05 49.8 7.1 79 165-247 455-564 (586)
23 1wcn_A Transcription elongatio 87.4 1.2 4E-05 34.0 5.8 44 167-213 18-62 (70)
24 1x2i_A HEF helicase/nuclease; 87.0 0.47 1.6E-05 35.3 3.3 24 224-247 43-66 (75)
25 3vdp_A Recombination protein R 85.1 0.68 2.3E-05 42.8 4.0 30 221-250 20-49 (212)
26 1dgs_A DNA ligase; AMP complex 84.4 1 3.5E-05 48.1 5.6 77 168-247 453-559 (667)
27 1kft_A UVRC, excinuclease ABC 84.2 0.62 2.1E-05 35.5 2.8 23 224-246 53-75 (78)
28 2owo_A DNA ligase; protein-DNA 84.1 1.8 6.1E-05 46.2 7.2 76 168-247 458-564 (671)
29 1z00_A DNA excision repair pro 83.7 0.82 2.8E-05 35.6 3.4 25 224-248 48-72 (89)
30 1vdd_A Recombination protein R 82.9 0.93 3.2E-05 42.3 3.9 29 222-250 7-35 (228)
31 2a1j_B DNA excision repair pro 82.2 0.76 2.6E-05 36.1 2.7 24 224-247 61-84 (91)
32 4gfj_A Topoisomerase V; helix- 82.2 0.62 2.1E-05 47.4 2.6 72 170-245 532-640 (685)
33 2fmp_A DNA polymerase beta; nu 81.6 2.6 9.1E-05 41.0 6.9 57 189-247 21-77 (335)
34 2duy_A Competence protein come 80.5 0.6 2.1E-05 35.3 1.5 53 180-245 19-71 (75)
35 2csb_A Topoisomerase V, TOP61; 79.7 5.3 0.00018 38.5 8.0 27 225-252 409-435 (519)
36 2ihm_A POL MU, DNA polymerase 79.2 2.5 8.6E-05 41.6 5.9 52 193-247 30-81 (360)
37 1ixr_A Holliday junction DNA h 77.9 1.4 4.8E-05 39.8 3.3 27 224-250 104-130 (191)
38 2duy_A Competence protein come 77.8 1.2 4.2E-05 33.5 2.5 22 225-246 25-46 (75)
39 2a1j_A DNA repair endonuclease 77.1 3 0.0001 30.8 4.4 38 168-210 16-54 (63)
40 2bcq_A DNA polymerase lambda; 76.9 3.9 0.00013 39.8 6.4 19 228-246 58-76 (335)
41 1jms_A Terminal deoxynucleotid 76.4 3 0.0001 41.4 5.5 49 196-247 52-100 (381)
42 1cuk_A RUVA protein; DNA repai 76.3 1.6 5.5E-05 39.7 3.3 27 224-250 105-131 (203)
43 2edu_A Kinesin-like protein KI 76.1 5.2 0.00018 31.7 5.9 59 180-247 32-90 (98)
44 2ztd_A Holliday junction ATP-d 75.3 5.5 0.00019 36.5 6.6 27 224-250 120-146 (212)
45 1u9l_A Transcription elongatio 74.8 9.8 0.00034 28.8 6.8 47 167-216 17-64 (70)
46 2fmp_A DNA polymerase beta; nu 73.4 2.8 9.5E-05 40.9 4.3 49 198-246 64-117 (335)
47 1s5l_U Photosystem II 12 kDa e 71.9 1.2 4.2E-05 38.3 1.2 53 181-246 56-108 (134)
48 2a1j_A DNA repair endonuclease 71.8 2.5 8.6E-05 31.2 2.8 23 226-249 3-25 (63)
49 1s5l_U Photosystem II 12 kDa e 69.6 1.6 5.6E-05 37.5 1.5 23 224-246 60-82 (134)
50 1z00_B DNA repair endonuclease 69.6 3.2 0.00011 32.6 3.1 24 223-246 14-37 (84)
51 2kp7_A Crossover junction endo 68.2 5.9 0.0002 31.3 4.4 42 203-246 36-77 (87)
52 2i5h_A Hypothetical protein AF 68.1 1.8 6.2E-05 39.7 1.5 26 221-246 126-151 (205)
53 1z00_B DNA repair endonuclease 66.6 7.7 0.00026 30.4 4.7 40 167-210 29-68 (84)
54 3arc_U Photosystem II 12 kDa e 66.0 1.9 6.6E-05 34.9 1.1 22 224-245 23-44 (97)
55 3b0x_A DNA polymerase beta fam 66.0 15 0.00053 37.9 8.3 75 169-246 34-112 (575)
56 3arc_U Photosystem II 12 kDa e 65.5 3.3 0.00011 33.5 2.4 54 180-246 18-71 (97)
57 2ihm_A POL MU, DNA polymerase 65.5 5 0.00017 39.4 4.2 49 198-246 68-121 (360)
58 2bcq_A DNA polymerase lambda; 63.4 6.1 0.00021 38.4 4.4 47 198-245 64-114 (335)
59 2bgw_A XPF endonuclease; hydro 62.9 4.8 0.00017 36.2 3.3 23 224-246 191-213 (219)
60 2edu_A Kinesin-like protein KI 62.2 4.2 0.00014 32.2 2.5 22 225-246 38-59 (98)
61 3c1y_A DNA integrity scanning 61.9 9.7 0.00033 37.9 5.5 47 168-217 327-373 (377)
62 1jms_A Terminal deoxynucleotid 61.3 5.3 0.00018 39.6 3.5 49 198-246 87-140 (381)
63 1ixr_A Holliday junction DNA h 59.6 5.5 0.00019 35.8 3.1 21 226-246 71-91 (191)
64 2ztd_A Holliday junction ATP-d 58.0 6.1 0.00021 36.2 3.1 22 225-246 86-107 (212)
65 1b22_A DNA repair protein RAD5 57.5 7 0.00024 32.4 3.1 47 166-215 35-82 (114)
66 4gfj_A Topoisomerase V; helix- 55.1 14 0.00047 37.8 5.2 39 169-211 481-519 (685)
67 3sgi_A DNA ligase; HET: DNA AM 52.9 2.9 9.8E-05 44.3 0.0 24 224-247 558-581 (615)
68 1cuk_A RUVA protein; DNA repai 52.2 7.9 0.00027 35.1 2.8 21 226-246 72-92 (203)
69 1x2i_A HEF helicase/nuclease; 44.8 39 0.0013 24.4 5.3 40 168-210 26-65 (75)
70 3c1y_A DNA integrity scanning 44.6 12 0.00042 37.2 3.0 36 210-245 327-365 (377)
71 2w9m_A Polymerase X; SAXS, DNA 43.0 12 0.00042 38.8 2.9 25 222-246 92-116 (578)
72 1kft_A UVRC, excinuclease ABC 42.3 28 0.00096 26.0 4.1 39 169-210 37-75 (78)
73 1vq8_Y 50S ribosomal protein L 42.1 5.3 0.00018 37.3 0.0 20 227-246 48-67 (241)
74 1z00_A DNA excision repair pro 36.8 73 0.0025 24.2 5.9 39 169-210 32-70 (89)
75 2w9m_A Polymerase X; SAXS, DNA 34.5 48 0.0016 34.3 5.8 56 181-243 87-147 (578)
76 1xqo_A 8-oxoguanine DNA glycos 33.6 89 0.003 29.5 6.8 124 147-306 46-186 (256)
77 1ucv_A Ephrin type-A receptor 33.2 1.5E+02 0.005 22.4 7.0 25 169-193 23-48 (81)
78 2rhf_A DNA helicase RECQ; HRDC 32.8 22 0.00076 26.7 2.2 22 222-243 42-63 (77)
79 2a1j_B DNA excision repair pro 32.5 67 0.0023 24.6 5.0 57 147-210 26-83 (91)
80 1skn_P DNA-binding domain of S 31.8 71 0.0024 25.6 5.0 41 176-216 30-70 (92)
81 2kz5_A Transcription factor NF 31.0 74 0.0025 25.4 5.0 41 176-216 34-74 (91)
82 3sgi_A DNA ligase; HET: DNA AM 30.1 11 0.00037 39.9 0.0 77 165-250 466-551 (615)
83 1xg7_A Hypothetical protein; s 29.8 3.2E+02 0.011 25.6 9.9 155 147-340 49-228 (250)
84 3c65_A Uvrabc system protein C 29.5 11 0.00039 34.8 0.0 21 224-245 202-222 (226)
85 3r8n_M 30S ribosomal protein S 29.0 31 0.001 28.6 2.6 22 226-247 15-36 (114)
86 2kv2_A Bloom syndrome protein; 27.8 24 0.00083 27.1 1.6 21 222-242 44-64 (85)
87 3u5c_S 40S ribosomal protein S 27.8 33 0.0011 29.7 2.6 21 227-247 30-50 (146)
88 3isy_A Bsupi, intracellular pr 26.6 36 0.0012 28.4 2.6 31 6-36 2-32 (120)
89 3b0x_A DNA polymerase beta fam 26.0 96 0.0033 31.9 6.3 58 189-247 12-73 (575)
90 1wud_A ATP-dependent DNA helic 25.5 35 0.0012 26.5 2.2 21 222-242 50-70 (89)
91 2ziu_A MUS81 protein; helix-ha 25.4 85 0.0029 29.5 5.3 20 227-246 237-256 (311)
92 2lz1_A Nuclear factor erythroi 25.2 87 0.003 25.0 4.4 39 175-213 33-71 (90)
93 3bqs_A Uncharacterized protein 25.2 17 0.00057 29.0 0.3 25 226-250 3-27 (93)
94 3iz6_M 40S ribosomal protein S 24.6 42 0.0014 29.2 2.8 22 226-247 27-48 (152)
95 3j20_O 30S ribosomal protein S 24.3 39 0.0013 29.3 2.5 23 226-248 22-44 (148)
96 2e1f_A Werner syndrome ATP-dep 23.0 33 0.0011 27.6 1.7 22 222-243 52-73 (103)
97 2nrt_A Uvrabc system protein C 22.5 47 0.0016 30.5 2.8 24 226-250 167-190 (220)
98 3mab_A Uncharacterized protein 22.4 23 0.00077 28.3 0.5 25 226-250 3-27 (93)
99 2nrt_A Uvrabc system protein C 22.2 71 0.0024 29.3 3.9 20 224-245 197-217 (220)
100 2xzm_M RPS18E; ribosome, trans 21.8 48 0.0016 28.9 2.5 22 226-247 29-50 (155)
101 2bgw_A XPF endonuclease; hydro 21.3 1.1E+02 0.0037 27.1 4.9 41 167-210 173-213 (219)
102 3psf_A Transcription elongatio 20.9 1.2E+02 0.0043 33.8 6.2 66 180-247 660-737 (1030)
103 2i1q_A DNA repair and recombin 20.4 1.9E+02 0.0064 26.7 6.6 47 167-216 14-61 (322)
104 4ic1_A Uncharacterized protein 20.4 27 0.00094 31.0 0.7 17 345-361 188-204 (206)
105 2rrd_A BLM HRDC domain, HRDC d 20.0 41 0.0014 26.9 1.6 20 222-241 59-78 (101)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=1.8e-45 Score=345.31 Aligned_cols=207 Identities=29% Similarity=0.519 Sum_probs=188.0
Q ss_pred hhHHHHHHHHHHHhccCCCcccccCCCCCCCCCCCcccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCH
Q psy4002 108 AHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSE 187 (378)
Q Consensus 108 ~~~~e~~~~l~~~~~~~~apvd~~G~~~~~~~~~~~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~ 187 (378)
..+.+++..|.+........ .+..+||++||++||+|||+++++..++.+|+..|||+++|+++++
T Consensus 8 ~~~~~i~~~L~~~y~~~~~~--------------l~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fpt~~~la~a~~ 73 (226)
T 1orn_A 8 QQIRYCLDEMAKMFPDAHCE--------------LVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPL 73 (226)
T ss_dssp HHHHHHHHHHHHHCTTCCCC--------------SCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCH
T ss_pred HHHHHHHHHHHHHcCccCCC--------------CCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCH
Confidence 45667777777764332111 1234699999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcc
Q psy4002 188 DVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267 (378)
Q Consensus 188 e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~ 267 (378)
++|+++|+++||+++||++|+++|+.+.++|+|++|+++++|++|||||+|||+++|+|++|++
T Consensus 74 ~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~---------------- 137 (226)
T 1orn_A 74 EELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVP---------------- 137 (226)
T ss_dssp HHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCC----------------
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHHCCCc----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999973
Q ss_pred hhhhhhhhhHHhhhccccCCccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCcccHHHHHHHHHHhcchhccCCCC
Q psy4002 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRP 347 (378)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~~~P 347 (378)
+|+||+||+|++.|+|++....++++++..+++|+|++.|+.+|++|++||+.+|++++|
T Consensus 138 --------------------~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~~C~~~~P 197 (226)
T 1orn_A 138 --------------------AIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSP 197 (226)
T ss_dssp --------------------CCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCC
T ss_pred --------------------eeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHcCCCCC
Confidence 456999999999999998757889999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcccccc
Q psy4002 348 SCETCLNKDLCPQGKKE 364 (378)
Q Consensus 348 ~C~~Cpl~~~C~~~~~~ 364 (378)
+|+.|||++.|+++...
T Consensus 198 ~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 198 QCPSCPLLHLCREGKKR 214 (226)
T ss_dssp CGGGCTTGGGCHHHHHH
T ss_pred CCCCCCChhhhhhHhhc
Confidence 99999999999998765
No 2
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=8.6e-45 Score=336.73 Aligned_cols=182 Identities=26% Similarity=0.469 Sum_probs=174.1
Q ss_pred ccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCch
Q psy4002 144 EVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP 223 (378)
Q Consensus 144 ~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip 223 (378)
..+||++||++||+|||+++++..++.+|+..|||+++|+++++++|.++|+++||+++||++|+++|+.+.++|+|++|
T Consensus 26 ~~~pfe~lv~~Il~qqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~ 105 (211)
T 2abk_A 26 FSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVP 105 (211)
T ss_dssp CSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCch
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHHHHHHhC
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLG 303 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rlg 303 (378)
+++++|++|||||+|||+++|+|++|++ +|+||+||+|++.|+|
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~~~~~~------------------------------------~~~vD~~v~Rv~~rlg 149 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNTAFGWP------------------------------------TIAVDTHIFRVCNRTQ 149 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHHHCCC------------------------------------CCCCCHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHCCCC------------------------------------cCCcCHHHHHHHHHhC
Confidence 9999999999999999999999999974 4569999999999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCcccHHHHHHHHHHhcchhccCCCCCCCCCCCccCCcccc
Q psy4002 304 WTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGK 362 (378)
Q Consensus 304 ~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~~~P~C~~Cpl~~~C~~~~ 362 (378)
+.. ..+++++++.+++|+|++.|+.+|++|++||+.+|++++|+|+.|||++.|+++.
T Consensus 150 l~~-~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~ 207 (211)
T 2abk_A 150 FAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKE 207 (211)
T ss_dssp SSC-CSSHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTT
T ss_pred CCC-CCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHCCCCCCCCCCCCChhhCCCcC
Confidence 876 6799999999999999999999999999999999999999999999999999864
No 3
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=1.4e-44 Score=337.95 Aligned_cols=187 Identities=22% Similarity=0.337 Sum_probs=172.1
Q ss_pred cccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCc
Q psy4002 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDI 222 (378)
Q Consensus 143 ~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~i 222 (378)
+..+||++||++||+|||+++++..++.+|.+.|||+++|+++++++|.++|+++||+++||++|+++|+.+.++|+|++
T Consensus 31 ~~~~pfe~lv~~IlsQqts~~~~~~~~~~l~~~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~ 110 (221)
T 1kea_A 31 HTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRV 110 (221)
T ss_dssp GCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHHHHHHh
Q psy4002 223 PNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRL 302 (378)
Q Consensus 223 p~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rl 302 (378)
|+++++|++|||||+|||+++|+|++|+ ++|+||+||+|++.|+
T Consensus 111 p~~~~~L~~lpGIG~~TA~~il~~~~~~------------------------------------~~~~vD~~v~Rv~~rl 154 (221)
T 1kea_A 111 PRNRKAILDLPGVGKYTCAAVMCLAFGK------------------------------------KAAMVDANFVRVINRY 154 (221)
T ss_dssp CSCHHHHHTSTTCCHHHHHHHHHHTTCC------------------------------------CCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCcHHHHHHHHHHhcCC------------------------------------CcceecHHHHHHHHHH
Confidence 9999999999999999999999999997 3456999999999999
Q ss_pred -CCCCCCCC--HHHHHHHHHhcCCcccHHHHHHHHHHhcchhccCCCCCCCCCCCccCCccccccc
Q psy4002 303 -GWTKVFKT--PEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKEL 365 (378)
Q Consensus 303 -g~~~~~~~--~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~ 365 (378)
|+...... ..++.+.++.|+|++.|..+|++||+||+.+|++++|+|+.|||++.|+++..+.
T Consensus 155 ~gl~~~~~~~~~~~l~~~ae~~~P~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~ 220 (221)
T 1kea_A 155 FGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKCS 220 (221)
T ss_dssp HCGGGTTCCTTSHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC-
T ss_pred hCCCCCCCcHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhchhhhcCC
Confidence 88652211 3567788899999999999999999999999999999999999999999886543
No 4
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=1.3e-44 Score=338.81 Aligned_cols=193 Identities=20% Similarity=0.284 Sum_probs=174.8
Q ss_pred ccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCch
Q psy4002 144 EVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP 223 (378)
Q Consensus 144 ~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip 223 (378)
..+||++||++||+|||+++++..++.+|+..|||+++|+++++++|.++|+++||+ +||++|+++|+.+.++|+|++|
T Consensus 27 ~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i~~~~~g~~p 105 (225)
T 1kg2_A 27 DKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVATLHGGKFP 105 (225)
T ss_dssp SCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHHHHHSTTSCC
T ss_pred CCCHHHHHHHHHHHCcCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHhCCCch
Confidence 456999999999999999999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHHHHHHhC
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLG 303 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rlg 303 (378)
+++++|++|||||+|||+++|+|++|++ +|+||+||+|++.|+|
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~------------------------------------~~~vD~~v~Rv~~rl~ 149 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH------------------------------------FPILDGNVKRVLARCY 149 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS------------------------------------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC------------------------------------cceeCHHHHHHHHHHc
Confidence 9999999999999999999999999974 4469999999999997
Q ss_pred CCCCCC----CHHHHHHHHHhcCCcccHHHHHHHHHHhcchhccCCCCCCCCCCCccCCcccccccc-cccCCCC
Q psy4002 304 WTKVFK----TPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELA-ERVKKSP 373 (378)
Q Consensus 304 ~~~~~~----~~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~-~~~~k~~ 373 (378)
++.... +++++.+.++.|+|.+.|+.+|++||+||+.+|++++|+|+.|||++.|+++..+.. .++.|++
T Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~ 224 (225)
T 1kg2_A 150 AVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKP 224 (225)
T ss_dssp TCCSCTTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCGGGSSCCCC
T ss_pred CCCCCCCccchHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcCCcccCCCCCC
Confidence 665222 245556667789999999999999999999999999999999999999999987766 5565443
No 5
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=9.4e-44 Score=354.00 Aligned_cols=197 Identities=23% Similarity=0.356 Sum_probs=183.1
Q ss_pred ccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCch
Q psy4002 144 EVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP 223 (378)
Q Consensus 144 ~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip 223 (378)
..+||++||++||+|||+++++..++.+|++.|||+++|+++++++|.++|+++|||+ ||++|+++|+.+.++|+|++|
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~g~~p 114 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYGGKVP 114 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHTTCCC
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHcCCCCh
Confidence 4569999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHHHHHHhC
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLG 303 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rlg 303 (378)
+++++|++|||||+|||++||+|+||+ ++|+||+||+|++.|+|
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~------------------------------------~~~~vD~~v~Rv~~rl~ 158 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGV------------------------------------PEPAVDGNVMRVLSRLF 158 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCC------------------------------------CCCCCCHHHHHHHHHHT
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCC------------------------------------CcccccHHHHHHHHHHc
Confidence 999999999999999999999999997 34569999999999999
Q ss_pred CCCCC----CCHHHHHHHHHhcCCcccHHHHHHHHHHhcchhccCCCCCCCCCCCccCCcccccccc-cccCCCCCCCC
Q psy4002 304 WTKVF----KTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELA-ERVKKSPKKRK 377 (378)
Q Consensus 304 ~~~~~----~~~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~-~~~~k~~~~~~ 377 (378)
+++.. .++.+++..++.|+|.+.|+.+|++||+||+.+|++++|+|+.|||++.|+++..+.. .+|.|++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~PvK~~kk~~ 237 (369)
T 3fsp_A 159 LVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAV 237 (369)
T ss_dssp TCCSCTTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCC
T ss_pred CcccCccccchHHHHHHHHHHhCChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCCcccCCccccccCc
Confidence 98632 3456778888999999999999999999999999999999999999999999998776 88888877654
No 6
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-44 Score=349.41 Aligned_cols=187 Identities=20% Similarity=0.318 Sum_probs=172.8
Q ss_pred cccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCc
Q psy4002 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDI 222 (378)
Q Consensus 143 ~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~i 222 (378)
+..+||++||++||+|||+++++..++.+|++.|||+++|+++++++|.++|+++|||+ ||++|+++|+.|.++|+|++
T Consensus 45 ~~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~g~~ 123 (287)
T 3n5n_X 45 LDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGGHM 123 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHSTTCC
T ss_pred CCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCCC
Confidence 34579999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hhhHHHHhc-CCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHHHHHH
Q psy4002 223 PNTIELLCK-LPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHR 301 (378)
Q Consensus 223 p~~~e~L~~-LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~R 301 (378)
|+++++|++ |||||+|||++||+|+||+ ++|+||+||+|++.|
T Consensus 124 p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~------------------------------------p~~~VDt~V~Rv~~R 167 (287)
T 3n5n_X 124 PRTAETLQQLLPGVGRYTAGAIASIAFGQ------------------------------------ATGVVDGNVARVLCR 167 (287)
T ss_dssp CSSHHHHHHHSTTCCHHHHHHHHHHHSCC------------------------------------CCCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHhcCC------------------------------------CCccccHHHHHHHHH
Confidence 999999999 9999999999999999997 345699999999999
Q ss_pred hCCCCCCCCHHHHHHH----HHhcCCcccHHHHHHHHHHhcchhccCCCCCCCCCCCccCCcccccccc
Q psy4002 302 LGWTKVFKTPEDTRKE----LESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELA 366 (378)
Q Consensus 302 lg~~~~~~~~~~~~~~----le~~lP~~~~~~~~~~Lv~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~ 366 (378)
+|+++...++..+++. ++.++|.+.|++||++||+||+.||++++|+|+.|||++.|+++..+..
T Consensus 168 lg~i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~~ 236 (287)
T 3n5n_X 168 VRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQ 236 (287)
T ss_dssp HTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHH
T ss_pred hCCCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHhcch
Confidence 9998754555555544 3678999999999999999999999999999999999999999987665
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=2.1e-34 Score=268.80 Aligned_cols=161 Identities=22% Similarity=0.293 Sum_probs=150.1
Q ss_pred CcccChHHHHHHHHHhccccHHHHHHHHHHHHHh-CCC------HHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHH
Q psy4002 142 APEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEH-GLT------IENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDIL 214 (378)
Q Consensus 142 ~~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~-~pt------~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i 214 (378)
++..+||++||++||+|||+++++.+++.+|.+. ||| +++|+++++++|+++|+++||+++||++|+++|+.+
T Consensus 25 ~~~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i 104 (218)
T 1pu6_A 25 WPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNI 104 (218)
T ss_dssp STTTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 4556799999999999999999999999999999 999 999999999999999999999999999999999999
Q ss_pred HHhcCC----CchhhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccc
Q psy4002 215 KKNYNN----DIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLC 290 (378)
Q Consensus 215 ~e~y~g----~ip~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (378)
.++|++ ++|+++++|++|||||+|||+++|+|++|++ +|+
T Consensus 105 ~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~------------------------------------~~~ 148 (218)
T 1pu6_A 105 LKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKE------------------------------------VMV 148 (218)
T ss_dssp HHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS------------------------------------CCC
T ss_pred HHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHHCCCC------------------------------------ccc
Confidence 999998 8899999999999999999999999999973 456
Q ss_pred cchHHHHHHHHhCCCCCCCCHHHHHHHHHh----cCC------------cccHHHHHHHHHHhcch
Q psy4002 291 VDVHVHRISHRLGWTKVFKTPEDTRKELES----WLP------------ESLWSEVNHLLVGFGQQ 340 (378)
Q Consensus 291 VD~hv~Ri~~Rlg~~~~~~~~~~~~~~le~----~lP------------~~~~~~~~~~Lv~~G~~ 340 (378)
||+||+|++.|+|+. ..+++++++.+++ ++| .+.|.++|.+||+||+.
T Consensus 149 vD~~v~Ri~~rlg~~--~~~~~~~~~~l~~~~p~~lp~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 149 VDKYSYLFLKKLGIE--IEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp CCHHHHHHHHHTTCC--CCSHHHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCC--CCCHHHHHHHHHHhhhhcCcchhhhcccccchHHHHHHHHHHHHHHhhh
Confidence 999999999999987 4789999999998 777 35799999999999997
No 8
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.96 E-value=7.7e-30 Score=237.92 Aligned_cols=149 Identities=17% Similarity=0.266 Sum_probs=134.4
Q ss_pred cChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccC--ChHHHHHHHHHHHH--HHHHhcCC
Q psy4002 145 VRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVG--FWKTKAKHIKMASD--ILKKNYNN 220 (378)
Q Consensus 145 ~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~G--f~~~KA~~I~~lA~--~i~e~y~g 220 (378)
.+||++||++||||||+++++.+++.+|+ +.|+.+++++|+++|+++| |+++||+||+++++ .+.+.|++
T Consensus 42 ~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~~~ 115 (214)
T 3fhf_A 42 EEWFKELCFCILTANFTAEGGIRIQKEIG------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVES 115 (214)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHT------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHHHH
T ss_pred CChHHHHHHHHHcCCCCHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 45999999999999999999999999996 6799999999999999999 99999999999999 88888887
Q ss_pred --CchhhHHHHh-cCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHH
Q psy4002 221 --DIPNTIELLC-KLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHR 297 (378)
Q Consensus 221 --~ip~~~e~L~-~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~R 297 (378)
++|+++++|+ +|||||+|||+++|+++ +. .++ ++||+||+|
T Consensus 116 ~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~-~~~----------------------------------~vVDthv~R 159 (214)
T 3fhf_A 116 FENEKVAREFLVRNIKGIGYKEASHFLRNV-GY-DDV----------------------------------AIIDRHILR 159 (214)
T ss_dssp SSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TC-CSC----------------------------------CCCCHHHHH
T ss_pred cCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CC-CCc----------------------------------ccCcHHHHH
Confidence 8999999999 99999999999999997 65 333 259999999
Q ss_pred HHHHhCCCCCCCCHHHHHHHHHhcCCcccHHHHHHHHHHhcchhccCC
Q psy4002 298 ISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQ 345 (378)
Q Consensus 298 i~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~~ 345 (378)
+++|+||++. .+ ..+|++.|.++|..|+.||+.+|.+.
T Consensus 160 i~~RlG~~~~--~~--------k~lt~~~y~e~~~~l~~~g~~~g~~~ 197 (214)
T 3fhf_A 160 ELYENNYIDE--IP--------KTLSRRKYLEIENILRDIGEEVNLKL 197 (214)
T ss_dssp HHHHTTSSSS--CC--------SSCCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHcCCCCC--CC--------CcCCHHHHHHHHHHHHHHHHHHCCCH
Confidence 9999999973 11 45678899999999999999999763
No 9
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.96 E-value=4.9e-29 Score=234.87 Aligned_cols=181 Identities=16% Similarity=0.166 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHHHhccCCCcccccCCCCCCCCCCCcccChHHHHHHHHHhccccHHHHHHHHHHHHHh------CCCHHH
Q psy4002 108 AHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEH------GLTIEN 181 (378)
Q Consensus 108 ~~~~e~~~~l~~~~~~~~apvd~~G~~~~~~~~~~~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~------~pt~e~ 181 (378)
..+.++++.|...++.+...++.+|...++. ....+||++||++||+||++++++.+++.+|.+. |||+++
T Consensus 24 ~d~~~~~~~L~~~Dp~l~~li~~~~g~rl~~---~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~ 100 (232)
T 4b21_A 24 SDYKRAEKHLSSIDNKWSSLVKKVGPCTLTP---HPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQ 100 (232)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHCSCCCCC---CTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHH
T ss_pred cCHHHHHHHHHhhCHHHHHHHHHcCCCCCCC---CCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4578888888887777777777776544331 1234799999999999999999999999999997 899999
Q ss_pred HhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCc-----------hhhHHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 182 ICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDI-----------PNTIELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 182 la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~i-----------p~~~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
|+++++++| +.+||+++||++|+++|+.+.+ |.+ ++.+++|++|||||+|||+++|+|++|+
T Consensus 101 la~~~~e~L----r~~Gl~~~Ka~~l~~~A~~~~~---g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~ 173 (232)
T 4b21_A 101 IMETDVETL----HECGFSKLKSQEIHIVAEAALN---KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGR 173 (232)
T ss_dssp HHTSCHHHH----HTTTCCHHHHHHHHHHHHHHHT---TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCC
T ss_pred HHcCCHHHH----HHcCCcHHHHHHHHHHHHHHHh---CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 999999987 6899999999999999999998 333 3678999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCcccc-chHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCcccHHH
Q psy4002 251 VTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCV-DVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSE 329 (378)
Q Consensus 251 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-D~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~ 329 (378)
+++|| | |+||+|++.|++..+...+++++++..+.|-|+..|..
T Consensus 174 pd~fp-----------------------------------v~D~~v~r~~~rl~~~~~~~~~~~~~~~~e~w~P~rs~A~ 218 (232)
T 4b21_A 174 LDIMP-----------------------------------ADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAA 218 (232)
T ss_dssp SSCCC-----------------------------------TTCHHHHHHHHHHTTCSSCCCHHHHHHHTGGGTTCHHHHH
T ss_pred CCeee-----------------------------------CccHHHHHHHHHHhCCCCCCCHHHHHHHHHHccCHHHHHH
Confidence 77665 6 99999999999877666788999999999999987776
Q ss_pred HHHH
Q psy4002 330 VNHL 333 (378)
Q Consensus 330 ~~~~ 333 (378)
++.|
T Consensus 219 ~yLw 222 (232)
T 4b21_A 219 WYLW 222 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 10
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.8e-28 Score=229.03 Aligned_cols=184 Identities=16% Similarity=0.114 Sum_probs=153.4
Q ss_pred ChhhHHHHHHHHHHHhccCCCcccccCCCCCCCCCCCccc-ChHHHHHHHHHhccccHHHHHHHHHHHHHhC------CC
Q psy4002 106 EPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEV-RRYHVLISLMLSSQTKDEVNHAAMGRLKEHG------LT 178 (378)
Q Consensus 106 ~p~~~~e~~~~l~~~~~~~~apvd~~G~~~~~~~~~~~~~-~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~------pt 178 (378)
-|..|.++++.|.+.++.+...++.+|...+... +.. +||++||++||+||++++++..++.+| +.| ||
T Consensus 11 i~~~~~~~~~~L~~~Dp~l~~li~~~g~~r~~~~---~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPt 86 (228)
T 3s6i_A 11 IVTSLTKAEIHLSGLDENWKRLVKLVGNYRPNRS---MEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPT 86 (228)
T ss_dssp -----CHHHHHHHTSCHHHHHHHHHHCSCCCCCT---TTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCC
T ss_pred chHHHHHHHHHHHhhChHHHHHHHHcCCCCCCCC---CCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCC
Confidence 3457889999999888888888888876554321 223 699999999999999999999999999 764 89
Q ss_pred HHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCch-----------hhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 179 IENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP-----------NTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 179 ~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip-----------~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
++.|+++++++| +++||+++||++|+++|+.+.+ |.+| +.+++|++|||||+|||+++|+|+
T Consensus 87 p~~la~~~~e~L----r~~G~~~rKa~~i~~~A~~~~~---g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 159 (228)
T 3s6i_A 87 PEEIRDMDFEIM----RACGFSARKIDSLKSIAEATIS---GLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFS 159 (228)
T ss_dssp HHHHHHSCHHHH----HHHTCCHHHHHHHHHHHHHHHH---TSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHc---CCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 999999999997 7899999999999999999997 5554 348999999999999999999999
Q ss_pred hccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCcccc-chHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCccc
Q psy4002 248 WGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCV-DVHVHRISHRLGWTKVFKTPEDTRKELESWLPESL 326 (378)
Q Consensus 248 ~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-D~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~ 326 (378)
+|++++|| | |.|++|++.+++..+...++++++...+.|.|+..
T Consensus 160 lg~pd~fp-----------------------------------vdD~~v~r~~~~~~~~~~~~~~~~~~~~~e~w~P~r~ 204 (228)
T 3s6i_A 160 LNRDDVMP-----------------------------------ADDLSIRNGYRYLHRLPKIPTKMYVLKHSEICAPFRT 204 (228)
T ss_dssp SCCSSCCC-----------------------------------TTCHHHHHHHHHHTTCSSCCCHHHHHHHHGGGTTCHH
T ss_pred CCCCCEEe-----------------------------------cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCHHH
Confidence 99977665 6 57899999999777656788999999999999988
Q ss_pred HHHHHHHHH
Q psy4002 327 WSEVNHLLV 335 (378)
Q Consensus 327 ~~~~~~~Lv 335 (378)
|..+|.|-.
T Consensus 205 ~A~~yLw~~ 213 (228)
T 3s6i_A 205 AAAWYLWKT 213 (228)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHh
Confidence 877775543
No 11
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.95 E-value=2.8e-28 Score=228.52 Aligned_cols=178 Identities=19% Similarity=0.116 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHHHHhccCCCcccccCCC-CCCCCCCCcccChHHHHHHHHHhccccHHHHHHHHHHHHHhC--CCHHHH
Q psy4002 106 EPAHWKEVLNNIREMRKHGDAPVDAMGWD-HSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHG--LTIENI 182 (378)
Q Consensus 106 ~p~~~~e~~~~l~~~~~~~~apvd~~G~~-~~~~~~~~~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~--pt~e~l 182 (378)
.+..|.+.+..+...++.+...++.+|.. .. ....+||++||++||+||++++++..++.+|.+.| ||+++|
T Consensus 24 ~~~~~~~~~~~l~~~D~~l~~l~~~~~~~~~~-----~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~l 98 (225)
T 2yg9_A 24 PPLTDHAGAVAHLSRDPVLAQVTSLCGELPVL-----APTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAAL 98 (225)
T ss_dssp CCCSCSHHHHHHHTTSHHHHHHHHHHCCCCCC-----CCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHH
T ss_pred ChhhHHHHHHHHHhcCHHHHHHHHHcCCCCCC-----CCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHH
Confidence 45678889999988888777777777654 22 23457999999999999999999999999999998 999999
Q ss_pred hccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcC-------CCchhhHHHHhcCCCccHHHHHHHHHHHhccccccC
Q psy4002 183 CNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYN-------NDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIG 255 (378)
Q Consensus 183 a~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~-------g~ip~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~ 255 (378)
+++++++| +.+||+++||+||+++|+.+.+... .+.++.+++|++|||||+|||+++|+|++|++++||
T Consensus 99 a~~~~e~L----r~~G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp 174 (225)
T 2yg9_A 99 LKVSGDDL----RGVGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS 174 (225)
T ss_dssp TTSCHHHH----HHTTCCHHHHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC
T ss_pred HcCCHHHH----HHCCCcHHHHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee
Confidence 99999988 7899999999999999999998321 022345899999999999999999999999976665
Q ss_pred CCCCCCCCCCcchhhhhhhhhHHhhhccccCCcccc-chHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCcccHHHHHHH
Q psy4002 256 KDESRQPILSPSSRQISRSELICVRKCEKKIPQLCV-DVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHL 333 (378)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-D~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~~~~~ 333 (378)
| |+||+|++.++| . +++++..++.|.|+..|..+|.|
T Consensus 175 -----------------------------------v~D~~v~r~~~~l~--~----~~~~~~~~e~~~P~r~~a~~~Lw 212 (225)
T 2yg9_A 175 -----------------------------------SGDLALRQGVERLY--P----GEDWRDVTARWAPYRSLASRYLW 212 (225)
T ss_dssp -----------------------------------TTCHHHHHHHHHHS--T----TSCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------------CccHHHHHHHHHhC--C----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 999999999998 1 45577889999999988888766
No 12
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.95 E-value=1.6e-28 Score=231.22 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhccCCCcccccCCCCCCCCCCCcccChHHHHHHHHHhccccHHHHHHHHHHHHHhC----CCHHHHhccC
Q psy4002 111 KEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHG----LTIENICNTS 186 (378)
Q Consensus 111 ~e~~~~l~~~~~~~~apvd~~G~~~~~~~~~~~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~----pt~e~la~a~ 186 (378)
.+.+..+...++.+...+..+|...+. ...+||++||++||+|||+++++..++.+|.+.| ||+++|++++
T Consensus 20 ~~~~~~l~~~d~~l~~l~~~~~~~~~~-----~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~ 94 (233)
T 2h56_A 20 SPEVKTIVAQDSRLFQFIEIAGEVQLP-----TKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVS 94 (233)
T ss_dssp SHHHHHHHTTCHHHHHHHHHHCCEEEE-----CCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSC
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCCCCC-----CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCC
Confidence 344444444444444344444332221 3346999999999999999999999999999974 5999999999
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHHHHHhc-CCC-c---h--hhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCC
Q psy4002 187 EDVLGKLIIPVGFWKTKAKHIKMASDILKKNY-NND-I---P--NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDES 259 (378)
Q Consensus 187 ~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y-~g~-i---p--~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~ 259 (378)
+++| +++||+++||++|+++|+.+.+.+ +++ + | +++++|++|||||+|||+++|+|++|++++||
T Consensus 95 ~e~L----r~~G~~~~KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p---- 166 (233)
T 2h56_A 95 DEAL----RQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS---- 166 (233)
T ss_dssp HHHH----HHTTCCHHHHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC----
T ss_pred HHHH----HHcCCCHHHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee----
Confidence 9998 789999999999999999999976 333 2 5 78999999999999999999999999876554
Q ss_pred CCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCcccHHHHHHHHHHhc
Q psy4002 260 RQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTK-VFKTPEDTRKELESWLPESLWSEVNHLLVGFG 338 (378)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rlg~~~-~~~~~~~~~~~le~~lP~~~~~~~~~~Lv~~G 338 (378)
||+|+.|++.++++.. ...++++++..++.|.|+..|..+++|.+..+
T Consensus 167 -------------------------------vdd~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~a~~~lw~~~~~ 215 (233)
T 2h56_A 167 -------------------------------VGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPYETVACLYLWKAAGT 215 (233)
T ss_dssp -------------------------------TTCHHHHHHHHHHHSSSCSCHHHHHHHHHGGGTTCHHHHHHHHHHHHTH
T ss_pred -------------------------------CchHHHHHHHHHhccCCCCCCHHHHHHHHHHcCcHHHHHHHHHHhcccc
Confidence 9999999999987754 34678889999999999999999999988776
Q ss_pred chh
Q psy4002 339 QQI 341 (378)
Q Consensus 339 ~~i 341 (378)
..-
T Consensus 216 ~~~ 218 (233)
T 2h56_A 216 FAE 218 (233)
T ss_dssp HHH
T ss_pred ccc
Confidence 544
No 13
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.95 E-value=5.7e-28 Score=223.58 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=128.5
Q ss_pred cccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccC--ChHHHHHHHHHHHHHHHH----
Q psy4002 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVG--FWKTKAKHIKMASDILKK---- 216 (378)
Q Consensus 143 ~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~G--f~~~KA~~I~~lA~~i~e---- 216 (378)
+..+||++||++||+|||+++++.+++.+| ++.|+.+++++|+++|+++| ||++||++|+++|+.+.+
T Consensus 29 ~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~ 102 (207)
T 3fhg_A 29 NEEVWFRELTLCLLTANSSFISAYQALNCL------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKE 102 (207)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred CcCCHHHHHHHHHHcCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhh
Confidence 345699999999999999999999999999 47899999999999999776 999999999999996543
Q ss_pred ---hcCCCch-hhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccc
Q psy4002 217 ---NYNNDIP-NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVD 292 (378)
Q Consensus 217 ---~y~g~ip-~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD 292 (378)
.+++..| +++++|++|||||+|||+++|+|+ +.. ++|+||
T Consensus 103 ~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~-~~~-----------------------------------~~~~vD 146 (207)
T 3fhg_A 103 EIKPLADEDQQLARERLLNIKGIGMQEASHFLRNV-GYF-----------------------------------DLAIID 146 (207)
T ss_dssp HHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHT-TCC-----------------------------------SSCCCC
T ss_pred hHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHh-CCC-----------------------------------Ccceec
Confidence 4445556 789999999999999999999983 322 445699
Q ss_pred hHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCcccHHHHHHHHHHhcchhccC
Q psy4002 293 VHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKS 344 (378)
Q Consensus 293 ~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~ 344 (378)
+||+|++.|+|+++.. +...++...|.++|..|+.||+.+|.+
T Consensus 147 ~~v~Ri~~rlg~~~~~---------~~k~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 147 RHIIDFMRRIGAIGET---------NVKQLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp HHHHHHHHHTTSSCCC---------CCSCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHcCCCCcc---------ccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999998731 233567789999999999999999865
No 14
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.94 E-value=1.4e-26 Score=207.41 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=108.8
Q ss_pred cChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchh
Q psy4002 145 VRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPN 224 (378)
Q Consensus 145 ~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~ 224 (378)
.+||++||++||+|||+++++..++.+|++.|||+++|+++++++|.++|+++|||++||++|+++++.+ +|.
T Consensus 29 ~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~-------vp~ 101 (161)
T 4e9f_A 29 HDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEY-------LTK 101 (161)
T ss_dssp TSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHH-------HHS
T ss_pred CChHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCc-------CCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999998754 677
Q ss_pred hHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHHHHHHh
Q psy4002 225 TIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRL 302 (378)
Q Consensus 225 ~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rl 302 (378)
++++|++|||||++||+++++||+|.. .+++++|.+++|++.++
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F~~~e~----------------------------------~~V~p~D~~l~r~l~wl 145 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIFCVNEW----------------------------------KQVHPEDHKLNKYHDWL 145 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHHTSSCG----------------------------------GGCCCCSHHHHHHHHHH
T ss_pred ChhhhhcCCCchHHHHHHHHHHHCCCC----------------------------------CCCCCCcHHHHHHHHHH
Confidence 899999999999999999999999853 24567999999999887
No 15
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.93 E-value=1.4e-26 Score=216.59 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=124.7
Q ss_pred cccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccC--ChHHHHHHHHHHHHHH---HHh
Q psy4002 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVG--FWKTKAKHIKMASDIL---KKN 217 (378)
Q Consensus 143 ~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~G--f~~~KA~~I~~lA~~i---~e~ 217 (378)
+..+||++||++||+|||+++++.+++.+| |+.|+.+++++|+++|+++| |+++||+||+++|+.+ .+.
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~ig~l~~~ 119 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNL 119 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGTTTHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999999999999999 68899999999999999999 9999999999999975 677
Q ss_pred cCCCchhhHHHHh-cCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHH
Q psy4002 218 YNNDIPNTIELLC-KLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVH 296 (378)
Q Consensus 218 y~g~ip~~~e~L~-~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~ 296 (378)
|++++|+++++|+ +|||||+|||++||++ +|+. ++|+||+||+
T Consensus 120 ~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~-----------------------------------~~~~VDthv~ 163 (219)
T 3n0u_A 120 VKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVE-----------------------------------DLAILDKHVL 163 (219)
T ss_dssp HHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCC-----------------------------------SCCCCCHHHH
T ss_pred hcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCC-----------------------------------CeeeecHHHH
Confidence 8899999999999 9999999999999999 7753 4556999999
Q ss_pred HHHHHhCCCCC---CC---CHHHHHHHHHhcCCc--ccHHHHHHHHHH
Q psy4002 297 RISHRLGWTKV---FK---TPEDTRKELESWLPE--SLWSEVNHLLVG 336 (378)
Q Consensus 297 Ri~~Rlg~~~~---~~---~~~~~~~~le~~lP~--~~~~~~~~~Lv~ 336 (378)
|++.|+||++. .. .+.+++..+.+|... ...+.+..+||.
T Consensus 164 Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a~~~g~~~~~ldl~lW~ 211 (219)
T 3n0u_A 164 RLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAFGESPGKFDLYLWY 211 (219)
T ss_dssp HHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999873 22 234444444444321 134455555543
No 16
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.93 E-value=3.8e-25 Score=214.41 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=133.8
Q ss_pred ccChHHHHHHHHHhccccHHHHHHHHHHHHHh--------------CCCHHHHhccCHHHHHHhhcccCChHHHHHHHHH
Q psy4002 144 EVRRYHVLISLMLSSQTKDEVNHAAMGRLKEH--------------GLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKM 209 (378)
Q Consensus 144 ~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~--------------~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~ 209 (378)
..+||++||++||+||++++++.+++.+|.+. ||||++|+.+++++|.+ +|+.. ||++|++
T Consensus 112 ~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~----~g~g~-Ra~~I~~ 186 (290)
T 3i0w_A 112 RQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE----CTAGF-RAKYLKD 186 (290)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH----TTCGG-GHHHHHH
T ss_pred CCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHH----cCCch-HHHHHHH
Confidence 46799999999999999999999999999875 69999999999999976 45543 8999999
Q ss_pred HHHHHHHhcC-------CCchhhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhc
Q psy4002 210 ASDILKKNYN-------NDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKC 282 (378)
Q Consensus 210 lA~~i~e~y~-------g~ip~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (378)
+|+.+.+.+. .+.++.+++|++|||||||||+++++|++|++++||
T Consensus 187 ~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fp--------------------------- 239 (290)
T 3i0w_A 187 TVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFP--------------------------- 239 (290)
T ss_dssp HHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCC---------------------------
T ss_pred HHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcce---------------------------
Confidence 9999998542 357889999999999999999999999999976665
Q ss_pred cccCCccccchHHHHHHHHhCCCCCCCCHHHHHHHH-HhcCCcccHHHHHHHHHHhcch
Q psy4002 283 EKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKEL-ESWLPESLWSEVNHLLVGFGQQ 340 (378)
Q Consensus 283 ~~~~~~~~VD~hv~Ri~~Rlg~~~~~~~~~~~~~~l-e~~lP~~~~~~~~~~Lv~~G~~ 340 (378)
||+||+|++.|+|+.. ..+++++++.+ +.|-| .++..++.|+.+|+.
T Consensus 240 --------vD~~v~r~~~rl~~~~-~~~~~~i~~~~~~~~~p--~~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 240 --------VDTWVKKAMMSLYVAP-DVSLKKIRDFGREKFGS--LSGFAQQYLFYYARE 287 (290)
T ss_dssp --------CCHHHHHHHHHHTSCT-TCCHHHHHHHHHHHHGG--GHHHHHHHHHHHHHH
T ss_pred --------ecHHHHHHHHHhcCCC-CCCHHHHHHHHHhhcch--HHHHHHHHHHHhhhh
Confidence 8999999999999987 67889998888 77776 456677778888875
No 17
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.91 E-value=3.2e-24 Score=213.76 Aligned_cols=155 Identities=19% Similarity=0.274 Sum_probs=125.7
Q ss_pred ccChHHHHHHHHHhccccHHHHHHHHHHHHH---------------hCCCHHHHhccCHHHHHHhhcccCChHHHHHHHH
Q psy4002 144 EVRRYHVLISLMLSSQTKDEVNHAAMGRLKE---------------HGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIK 208 (378)
Q Consensus 144 ~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~---------------~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~ 208 (378)
..+||++||++||+||++++++..++.+|.+ .|||+++|+.++.++ .|+.+||. .||+||+
T Consensus 149 ~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee---~Lr~~Gl~-~RA~~I~ 224 (360)
T 2xhi_A 149 RQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEA---HLRKLGLG-YRARYVS 224 (360)
T ss_dssp CCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHH---HHHHTTCT-THHHHHH
T ss_pred CCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHH---HHHHcCCc-HHHHHHH
Confidence 3579999999999999999999999999988 479999999997543 35789995 6999999
Q ss_pred HHHHHHHHhcCCC--------ch--hhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHH
Q psy4002 209 MASDILKKNYNND--------IP--NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELIC 278 (378)
Q Consensus 209 ~lA~~i~e~y~g~--------ip--~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 278 (378)
++|+.+.++|+|+ +| +++++|++|||||+|||++|++|++|++++||
T Consensus 225 ~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fp----------------------- 281 (360)
T 2xhi_A 225 ASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVP----------------------- 281 (360)
T ss_dssp HHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCC-----------------------
T ss_pred HHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEE-----------------------
Confidence 9999999999875 44 78999999999999999999999999976665
Q ss_pred hhhccccCCccccchHHHHHHHHh-CCCCCC---CCH-HHHHH-----HHHhcCCcccHHHHHHHHHHh
Q psy4002 279 VRKCEKKIPQLCVDVHVHRISHRL-GWTKVF---KTP-EDTRK-----ELESWLPESLWSEVNHLLVGF 337 (378)
Q Consensus 279 ~~~~~~~~~~~~VD~hv~Ri~~Rl-g~~~~~---~~~-~~~~~-----~le~~lP~~~~~~~~~~Lv~~ 337 (378)
||+||+|++.|+ |+.... .++ ..... ..+.|-|...|..++.|-.++
T Consensus 282 ------------vDthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~w~p~~~~a~~yLw~~~~ 338 (360)
T 2xhi_A 282 ------------VNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADL 338 (360)
T ss_dssp ------------CSHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred ------------ecHHHHHHHHHHhCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999996 876521 122 22222 345677777776666665444
No 18
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.91 E-value=6.2e-24 Score=204.58 Aligned_cols=146 Identities=15% Similarity=0.194 Sum_probs=129.1
Q ss_pred cChHHHHHHHHHhccccHHHHHHHHHHHHH-------------hCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHH
Q psy4002 145 VRRYHVLISLMLSSQTKDEVNHAAMGRLKE-------------HGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMAS 211 (378)
Q Consensus 145 ~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~-------------~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA 211 (378)
.+||++||++||+||++++++..++.+|.+ .|||+++|+++++++| +.+||+++||++|+++|
T Consensus 111 ~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra~~i~~~A 186 (282)
T 1mpg_A 111 VDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIHLA 186 (282)
T ss_dssp SCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHH
Confidence 679999999999999999999999999975 3689999999999998 78999999999999999
Q ss_pred HHHHHh-cCCCc----hhhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccC
Q psy4002 212 DILKKN-YNNDI----PNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKI 286 (378)
Q Consensus 212 ~~i~e~-y~g~i----p~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (378)
+.+.++ ++++. ++.+++|++|||||+|||+++++|++|++++||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p------------------------------- 235 (282)
T 1mpg_A 187 NAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL------------------------------- 235 (282)
T ss_dssp HHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-------------------------------
T ss_pred HHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-------------------------------
Confidence 999996 66544 456899999999999999999999999976665
Q ss_pred CccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCcccHHHHHHHHH
Q psy4002 287 PQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLV 335 (378)
Q Consensus 287 ~~~~VD~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv 335 (378)
||+|+.| ++++ ..+++++++.++.|.|++.|..+|.+..
T Consensus 236 ----vdd~~~r--~~l~----~~~~~~~~~~~~~~~P~r~~a~~~lw~~ 274 (282)
T 1mpg_A 236 ----PDDYLIK--QRFP----GMTPAQIRRYAERWKPWRSYALLHIWYT 274 (282)
T ss_dssp ----TTCHHHH--HHST----TCCHHHHHHHHGGGTTCHHHHHHHHHTC
T ss_pred ----cccHHHH--HHhc----cCCHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8777776 5552 5788999999999999999999998754
No 19
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.90 E-value=1e-23 Score=204.56 Aligned_cols=149 Identities=17% Similarity=0.124 Sum_probs=127.6
Q ss_pred cChHHHHHHHHHhccccHHHHHHHHHHHHHh--------------CCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHH
Q psy4002 145 VRRYHVLISLMLSSQTKDEVNHAAMGRLKEH--------------GLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA 210 (378)
Q Consensus 145 ~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~--------------~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~l 210 (378)
.+||++||++||+||++++++..++.+|.+. |||+++|+++++++| +.+||+++||++|+++
T Consensus 116 ~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~L----r~~G~~~rKa~~i~~~ 191 (295)
T 2jhn_A 116 MSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGL----RECGLSRRKAELIVEI 191 (295)
T ss_dssp SSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHH----HHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHH
Confidence 5699999999999999999999999999987 799999999999987 7899999999999999
Q ss_pred HHHHHHhcCC--Cc--hhhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccC
Q psy4002 211 SDILKKNYNN--DI--PNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKI 286 (378)
Q Consensus 211 A~~i~e~y~g--~i--p~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (378)
|+. ..+++ .+ .+.+++|++|||||+|||+++++|++| +++||
T Consensus 192 A~~--g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fp------------------------------- 237 (295)
T 2jhn_A 192 AKE--ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFP------------------------------- 237 (295)
T ss_dssp HTC--SSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCC-------------------------------
T ss_pred HHC--CCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCccc-------------------------------
Confidence 998 33332 22 345899999999999999999999999 87776
Q ss_pred Ccccc-chHHHHHHHHh-CCCCCCCCHHHHHHHHHhcCCcccHHHHHHHHH
Q psy4002 287 PQLCV-DVHVHRISHRL-GWTKVFKTPEDTRKELESWLPESLWSEVNHLLV 335 (378)
Q Consensus 287 ~~~~V-D~hv~Ri~~Rl-g~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv 335 (378)
| |.|++|++.++ |+.....+++++++.++.|.|+..|..+|.+..
T Consensus 238 ----vdD~~~rr~~~~~~g~~~~~~~~~~~~~~~e~~~p~r~~a~~~Lw~~ 284 (295)
T 2jhn_A 238 ----ADDLGVRRAVSRLYFNGEIQSAEKVREIARERFGRFARDILFYLFLY 284 (295)
T ss_dssp ----TTCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHTGGGHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 7 66667799998 553225678889999999999998888887654
No 20
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=96.07 E-value=0.057 Score=49.02 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHhccccHHHHHHHHHHHHHhC--CCHHHHhccCHHHHHHhhcccCC--hHHHHHHHHHHHHHHHH---hc
Q psy4002 146 RRYHVLISLMLSSQTKDEVNHAAMGRLKEHG--LTIENICNTSEDVLGKLIIPVGF--WKTKAKHIKMASDILKK---NY 218 (378)
Q Consensus 146 ~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~--pt~e~la~a~~e~L~~~i~~~Gf--~~~KA~~I~~lA~~i~e---~y 218 (378)
.-|+.|+-+..-.-.++..+..-.+.|++.| ++++.|+..+++++++++..-|. ++.|.+.+..=|+.+++ +|
T Consensus 30 ~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~ 109 (186)
T 2jg6_A 30 ALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAY 109 (186)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999999999999999999987 69999999999999999999887 66787777777776553 44
Q ss_pred CC----------------------Cchh-------hHHHHhc--CCCccHHHHHHHHHH
Q psy4002 219 NN----------------------DIPN-------TIELLCK--LPGVGPKMAHLCMNH 246 (378)
Q Consensus 219 ~g----------------------~ip~-------~~e~L~~--LpGVGpktA~~~l~~ 246 (378)
|+ ++|. .-.+|.+ ++-|||.|+..+|+-
T Consensus 110 gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvGpt~~YafmQA 168 (186)
T 2jg6_A 110 GSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEA 168 (186)
T ss_dssp SCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCCHHHHHHHHHH
T ss_pred CCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeechHHHHHHHHH
Confidence 43 1221 1234553 788999999999874
No 21
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=95.71 E-value=0.11 Score=47.15 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHhccccHHHHHHHHHHHHHhC--CCHHHHhccCHHHHHHhhcccCC--hHHHHHHHHHHHHHHHH---hc
Q psy4002 146 RRYHVLISLMLSSQTKDEVNHAAMGRLKEHG--LTIENICNTSEDVLGKLIIPVGF--WKTKAKHIKMASDILKK---NY 218 (378)
Q Consensus 146 ~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~--pt~e~la~a~~e~L~~~i~~~Gf--~~~KA~~I~~lA~~i~e---~y 218 (378)
.-|+.|+-+..-.-.++..+..-...|++.| ++++.|+..+++++++++..-|. ++.|.+.+..=|+.+++ +|
T Consensus 30 ~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~ 109 (183)
T 2ofk_A 30 KLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNG 109 (183)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999999999999999999987 69999999999999999998887 66788888887777654 44
Q ss_pred CC----------------------Cchh-------hHHHHh--cCCCccHHHHHHHHHH
Q psy4002 219 NN----------------------DIPN-------TIELLC--KLPGVGPKMAHLCMNH 246 (378)
Q Consensus 219 ~g----------------------~ip~-------~~e~L~--~LpGVGpktA~~~l~~ 246 (378)
|+ ++|. ...+|. .++-|||.|+..+|.-
T Consensus 110 Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvGpT~~yafmQA 168 (183)
T 2ofk_A 110 ESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQA 168 (183)
T ss_dssp CCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred CCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecChHHHHHHHHH
Confidence 43 1111 123455 3788999999888874
No 22
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=90.08 E-value=0.5 Score=49.75 Aligned_cols=79 Identities=22% Similarity=0.218 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCC--CHHHHhccCHHHHHHhhcccCChHHHHHHHHHHH-------------------------HHHHHh
Q psy4002 165 NHAAMGRLKEHGL--TIENICNTSEDVLGKLIIPVGFWKTKAKHIKMAS-------------------------DILKKN 217 (378)
Q Consensus 165 ~~~~~~~L~~~~p--t~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA-------------------------~~i~e~ 217 (378)
..+.++.|.+.+. ++.+|..++.++|..+ =||....|..|.+.- +.|.+.
T Consensus 455 G~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l---~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~ 531 (586)
T 4glx_A 455 GDKIIDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAY 531 (586)
T ss_dssp CHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHhCCCHHHHhcc---cCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHH
Confidence 3456677777764 7888888888777433 367666666665443 223333
Q ss_pred cCCCc----hhhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 218 YNNDI----PNTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 218 y~g~i----p~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
|+ ++ ..+.++|.+++|||+.+|..+..|-
T Consensus 532 f~-sl~~l~~a~~e~l~~i~giG~~~A~si~~ff 564 (586)
T 4glx_A 532 FG-TLEALEAASIEELQKVPDVGIVVASHVHNFF 564 (586)
T ss_dssp HC-SHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cC-CHHHHHccCHHHHhcCCCccHHHHHHHHHHH
Confidence 43 22 2356899999999999999998873
No 23
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=87.39 E-value=1.2 Score=33.96 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=37.7
Q ss_pred HHHHHHHHhCC-CHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHH
Q psy4002 167 AAMGRLKEHGL-TIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDI 213 (378)
Q Consensus 167 ~~~~~L~~~~p-t~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~ 213 (378)
....+|.+.+. |.++|+.++.++|.++ .|++..||..|+..|+.
T Consensus 18 ~~~~kL~e~Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 18 DLAFKLAARGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHHHHTTTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 44577888765 9999999999999764 49999999999999997
No 24
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=86.98 E-value=0.47 Score=35.27 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.3
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
.+.++|.+++|||+++|..+..+.
T Consensus 43 a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 43 ASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHHHHHH
Confidence 357889999999999999987653
No 25
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=85.15 E-value=0.68 Score=42.76 Aligned_cols=30 Identities=37% Similarity=0.555 Sum_probs=25.1
Q ss_pred CchhhHHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 221 DIPNTIELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 221 ~ip~~~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
.+...++.|.+|||||+|+|.=+..+.+.+
T Consensus 20 ~l~~LI~~l~~LPGIG~KsA~RlA~hLL~~ 49 (212)
T 3vdp_A 20 SVAKLIEELSKLPGIGPKTAQRLAFFIINM 49 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHcC
Confidence 345678899999999999999988887765
No 26
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=84.42 E-value=1 Score=48.09 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=48.7
Q ss_pred HHHHHHHhCC--CHHHHhccCHHHHHHhhcccCChHHHHHHHHHH-------------------------HHHHHHhcCC
Q psy4002 168 AMGRLKEHGL--TIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA-------------------------SDILKKNYNN 220 (378)
Q Consensus 168 ~~~~L~~~~p--t~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~l-------------------------A~~i~e~y~g 220 (378)
.+..|.+.+. ++.+|..+..++|.++ -||...++..|.+. |+.|.+.|+.
T Consensus 453 ~i~~L~~~g~I~~~~DL~~L~~e~L~~l---~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fgs 529 (667)
T 1dgs_A 453 LIERLLEKGLVRDVADLYHLRKEDLLGL---ERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGT 529 (667)
T ss_dssp HHHHHHHTTSCSSGGGGGGGCCHHHHTT---SSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSB
T ss_pred HHHHHHHcCCCCCHHHHHhcCHHHHhcc---cccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcCC
Confidence 4455666653 7777777777776543 25544455554433 3334444543
Q ss_pred ---CchhhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 221 ---DIPNTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 221 ---~ip~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
-...+.++|.+++|||+++|+.+..|-
T Consensus 530 l~~l~~As~eeL~~I~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 530 MDRLLEASLEELIEVEEVGELTARAILETL 559 (667)
T ss_dssp HHHHTTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHhccCcCHHHHHHHHHHH
Confidence 113457899999999999999998764
No 27
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=84.21 E-value=0.62 Score=35.51 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.7
Q ss_pred hhHHHHhcCCCccHHHHHHHHHH
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
.+.++|.+++|||+++|..+..+
T Consensus 53 a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 53 ASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp CCHHHHTTSSSTTSHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHH
Confidence 36789999999999999988764
No 28
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=84.07 E-value=1.8 Score=46.25 Aligned_cols=76 Identities=22% Similarity=0.227 Sum_probs=46.8
Q ss_pred HHHHHHHhCC--CHHHHhccCHHHHHHhhcccCChHHHHHHHHHHH-------------------------HHHHHhcCC
Q psy4002 168 AMGRLKEHGL--TIENICNTSEDVLGKLIIPVGFWKTKAKHIKMAS-------------------------DILKKNYNN 220 (378)
Q Consensus 168 ~~~~L~~~~p--t~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA-------------------------~~i~e~y~g 220 (378)
.+..|.+.+. ++.+|..+..++|..+ -||....+..|.+.. +.|.+.|+.
T Consensus 458 ~i~~L~~~g~I~~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgs 534 (671)
T 2owo_A 458 IIDQLVEKEYVHTPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGT 534 (671)
T ss_dssp HHHHHHHTTCCSSGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCCCCHHHHHhhCHHHhhcc---cccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCC
Confidence 3455555543 6777777776666433 366665666655442 222233332
Q ss_pred Cc----hhhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 221 DI----PNTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 221 ~i----p~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
+ ..+.++|.+++|||+++|..+..|-
T Consensus 535 -l~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 535 -LEALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp -HHHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred -HHHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 2 2356889999999999999987763
No 29
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=83.71 E-value=0.82 Score=35.64 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.1
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHHh
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHAW 248 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a~ 248 (378)
.+.++|.+++|||+++|..+..+.-
T Consensus 48 a~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 48 ASREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999887643
No 30
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=82.89 E-value=0.93 Score=42.26 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=24.7
Q ss_pred chhhHHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 222 IPNTIELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 222 ip~~~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
+...++.|.+|||||+|+|.=+..+.+.+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~RlA~hLL~~ 35 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQ 35 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhHCCCCCHHHHHHHHHHHHcC
Confidence 34578899999999999999988887765
No 31
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=82.22 E-value=0.76 Score=36.10 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.6
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
.+.++|.+++|||+++|..++.+.
T Consensus 61 as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 61 ASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp CCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHH
Confidence 357899999999999999988764
No 32
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=82.18 E-value=0.62 Score=47.44 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=37.1
Q ss_pred HHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHH------------HHhcCCC------c---------
Q psy4002 170 GRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDIL------------KKNYNND------I--------- 222 (378)
Q Consensus 170 ~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i------------~e~y~g~------i--------- 222 (378)
..|...+.+..++..++.++| +.+||+..+...|+.+-+.+ .++|+.- +
T Consensus 532 ~elkr~ygs~savr~~pv~el----relg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g 607 (685)
T 4gfj_A 532 DELKRKYGSASAVRRLPVEEL----RELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELG 607 (685)
T ss_dssp HHHHHHSSCHHHHHHSCHHHH----HTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSC
T ss_pred HHHHHhhccHHHHHhccHHHH----HHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhccC
Confidence 346678999999999999998 68899999998888665544 4455530 1
Q ss_pred ----------hhhHHHHhcCCCccHHHHHHHHH
Q psy4002 223 ----------PNTIELLCKLPGVGPKMAHLCMN 245 (378)
Q Consensus 223 ----------p~~~e~L~~LpGVGpktA~~~l~ 245 (378)
...+..|+.+.||||+.|+-++-
T Consensus 608 ~~~~~~~eik~p~~k~ll~~~gv~p~la~r~~e 640 (685)
T 4gfj_A 608 ATPKAAAEIKGPEFKFLLNIEGVGPKLAERILE 640 (685)
T ss_dssp CGGGC----------------------------
T ss_pred CCHHHHHHhcChhHHHhhcccCCCHHHHHHHHH
Confidence 11346788899999999887663
No 33
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=81.59 E-value=2.6 Score=40.99 Aligned_cols=57 Identities=26% Similarity=0.264 Sum_probs=39.6
Q ss_pred HHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 189 VLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 189 ~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
++..++...|-..-|+...+.+|..|.. +..++. +.++|.+|||||+++|+.+.-+.
T Consensus 21 ~ia~l~e~~~~~~~rv~AYr~Aa~~l~~-l~~~i~-~~~~l~~LpGIG~~~A~kI~E~l 77 (335)
T 2fmp_A 21 ELANFEKNVSQAIHKYNAYRKAASVIAK-YPHKIK-SGAEAKKLPGVGTKIAEKIDEFL 77 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH-CSSCCC-CHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHh-CCcccc-CHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444444344433477788888888765 555553 45679999999999999988763
No 34
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=80.51 E-value=0.6 Score=35.29 Aligned_cols=53 Identities=23% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHH
Q psy4002 180 ENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMN 245 (378)
Q Consensus 180 e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~ 245 (378)
-++..++.++|..+ . |....+|+.|.+. + --.++++|.+++|||+++++-+..
T Consensus 19 idiN~a~~~~L~~i-p--GIG~~~A~~Il~~-------r---~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 19 VSLNEASLEELMAL-P--GIGPVLARRIVEG-------R---PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp EETTTCCHHHHTTS-T--TCCHHHHHHHHHT-------C---CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred cChhhCCHHHHHhC-C--CCCHHHHHHHHHH-------c---ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 35666778777543 3 5555555555543 2 125788999999999999987653
No 35
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=79.69 E-value=5.3 Score=38.48 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=20.9
Q ss_pred hHHHHhcCCCccHHHHHHHHHHHhcccc
Q psy4002 225 TIELLCKLPGVGPKMAHLCMNHAWGIVT 252 (378)
Q Consensus 225 ~~e~L~~LpGVGpktA~~~l~~a~~r~~ 252 (378)
.+.+|++-.|||++||+-+|. +||.++
T Consensus 409 qlaeltkkegvgrktaerllr-afgnpe 435 (519)
T 2csb_A 409 QLAELTKKEGVGRKTAERLLR-AFGNPE 435 (519)
T ss_dssp HHHHHHTSTTCCHHHHHHHHH-HHSSHH
T ss_pred HHHHHhhhcccchhHHHHHHH-HhCCHH
Confidence 357889999999999998654 677554
No 36
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=79.25 E-value=2.5 Score=41.61 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=37.0
Q ss_pred hhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 193 LIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 193 ~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
++.-.| ..-|++..+.+|..|.. +..++. ++++|.+|||||+++|..+.-+.
T Consensus 30 ~~e~~g-~~~r~~AYr~Aa~~l~~-l~~~i~-~~~~l~~lpGIG~~~A~kI~E~l 81 (360)
T 2ihm_A 30 AAGFEA-NEGRLLSFSRAASVLKS-LPCPVA-SLSQLHGLPYFGEHSTRVIQELL 81 (360)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHH-CSSCCC-SGGGGTTCTTCCHHHHHHHHHHH
T ss_pred HHHHcC-CcHHHHHHHHHHHHHHh-CCcccC-CHHHHhcCCCCCHHHHHHHHHHH
Confidence 333345 44577778888888876 444443 34469999999999999988663
No 37
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=77.85 E-value=1.4 Score=39.81 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=22.0
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
.+.++|.++||||+++|.-+...--++
T Consensus 104 ~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 104 GDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp TCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999987644343
No 38
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=77.76 E-value=1.2 Score=33.52 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.6
Q ss_pred hHHHHhcCCCccHHHHHHHHHH
Q psy4002 225 TIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 225 ~~e~L~~LpGVGpktA~~~l~~ 246 (378)
+.++|.++||||+++|..++.+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 5788999999999999998874
No 39
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=77.15 E-value=3 Score=30.75 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHH-HHHHHHH
Q psy4002 168 AMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTK-AKHIKMA 210 (378)
Q Consensus 168 ~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~K-A~~I~~l 210 (378)
-...|..+|.|+++|.+++.++|.++ +| ... |+.|.+.
T Consensus 16 r~~~LL~~Fgs~~~i~~As~eeL~~v---ig--~~~~A~~I~~~ 54 (63)
T 2a1j_A 16 NCRSLMHHVKNIAELAALSQDELTSI---LG--NAANAKQLYDF 54 (63)
T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHH---HS--CHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHH---cC--chHHHHHHHHH
Confidence 45678889999999999999999888 44 334 7777543
No 40
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=76.89 E-value=3.9 Score=39.83 Aligned_cols=19 Identities=32% Similarity=0.728 Sum_probs=9.2
Q ss_pred HHhcCCCccHHHHHHHHHH
Q psy4002 228 LLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 228 ~L~~LpGVGpktA~~~l~~ 246 (378)
+|.+|||||+++|..+.-+
T Consensus 58 ~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHH
T ss_pred HHhcCCCccHHHHHHHHHH
Confidence 3455555555555544433
No 41
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=76.45 E-value=3 Score=41.41 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=35.8
Q ss_pred ccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 196 PVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 196 ~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
-.| ..-|+...+.+|..|.. +..++. ++++|.+|||||+++|..+.-+.
T Consensus 52 ~~g-~~~rv~AYr~Aa~~l~~-l~~~i~-~~~~l~~lpGIG~~ia~kI~E~l 100 (381)
T 1jms_A 52 LRE-NEGSCLAFMRASSVLKS-LPFPIT-SMKDTEGIPCLGDKVKSIIEGII 100 (381)
T ss_dssp HTT-CHHHHHHHHHHHHHHHT-CSSCCC-SGGGGTTCSSCCHHHHHHHHHHH
T ss_pred hhC-CcHHHHHHHHHHHHHHh-CCcccc-CHHHHhcCCCCcHHHHHHHHHHH
Confidence 344 44578888888888865 444443 34469999999999999988763
No 42
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=76.35 E-value=1.6 Score=39.75 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=22.2
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
.+.++|.++||||+++|.-+...--++
T Consensus 105 ~d~~~L~~vpGIG~K~A~rI~~elk~k 131 (203)
T 1cuk_A 105 EEVGALVKLPGIGKKTAERLIVEMKDR 131 (203)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999887654343
No 43
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=76.11 E-value=5.2 Score=31.72 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=39.5
Q ss_pred HHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 180 ENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 180 e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
-+|..++.++|.. |..+| ...|+.|.+.-+. . |.+ .++++|..++|||+++++.+...+
T Consensus 32 i~iN~a~~~~L~~-ipGIG--~~~A~~Il~~r~~-~----g~f-~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 32 DLLNEGSARDLRS-LQRIG--PKKAQLIVGWREL-H----GPF-SQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHSCHHHHHH-STTCC--HHHHHHHHHHHHH-H----CCC-SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred eehhhCCHHHHHH-CCCCC--HHHHHHHHHHHHh-c----CCc-CCHHHHHhCCCCCHHHHHHHHHCc
Confidence 4577778888754 34454 4566666665221 1 223 467889999999999999887654
No 44
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=75.27 E-value=5.5 Score=36.54 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=22.2
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
.+.+.|+++||||+|+|+-+..---++
T Consensus 120 ~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 120 GNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp TCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999987654444
No 45
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=74.76 E-value=9.8 Score=28.83 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=38.3
Q ss_pred HHHHHHHHhCC-CHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Q psy4002 167 AAMGRLKEHGL-TIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKK 216 (378)
Q Consensus 167 ~~~~~L~~~~p-t~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e 216 (378)
.....|.+.|+ |.|.|+-++.++|. .--||...|+.-|+..|+.+..
T Consensus 17 ~~a~~L~~~Gf~tve~vA~~~~~eL~---~I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 17 DFATVLVEEGFSTLEELAYVPMKELL---EIEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHSCHHHHT---TSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCcHHHHHcCCHHHHh---hccCCCHHHHHHHHHHHHHHHH
Confidence 34566777665 99999999999984 3469999999999999998765
No 46
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=73.44 E-value=2.8 Score=40.85 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHHHH----HHHhcCCCc-hhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 198 GFWKTKAKHIKMASDI----LKKNYNNDI-PNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 198 Gf~~~KA~~I~~lA~~----i~e~y~g~i-p~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
|....-|..|.++.+. -.+....+. |..+.+|++++||||++|..+-.-
T Consensus 64 GIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 64 GVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp TCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc
Confidence 3435566667666542 011111234 778999999999999999987543
No 47
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=71.87 E-value=1.2 Score=38.29 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=37.9
Q ss_pred HHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 181 NICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 181 ~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
+|..++.++|.+ --|++..||..|. + +|.+ .++|+|.+++|||+++.+.+--+
T Consensus 56 niNtA~~~eL~~---LpGiGp~~A~~II-------~--~GpF-~svedL~~V~GIg~k~~e~l~~~ 108 (134)
T 1s5l_U 56 DLNNTNIAAFIQ---YRGLYPTLAKLIV-------K--NAPY-ESVEDVLNIPGLTERQKQILREN 108 (134)
T ss_dssp ETTTSCGGGGGG---STTCTHHHHHHHH-------H--TCCC-SSGGGGGGCTTCCHHHHHHHHHH
T ss_pred eCcccCHHHHHH---CCCCCHHHHHHHH-------H--cCCC-CCHHHHHhCCCCCHHHHHHHHHh
Confidence 456677777754 3588888998887 2 2222 37899999999999987776543
No 48
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=71.77 E-value=2.5 Score=31.19 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=18.9
Q ss_pred HHHHhcCCCccHHHHHHHHHHHhc
Q psy4002 226 IELLCKLPGVGPKMAHLCMNHAWG 249 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~a~~ 249 (378)
.+.|..+||||++.+..+|.. ||
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~-Fg 25 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH-VK 25 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH-CS
T ss_pred HhHHHcCCCCCHHHHHHHHHH-cC
Confidence 357889999999999998864 44
No 49
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=69.63 E-value=1.6 Score=37.52 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.2
Q ss_pred hhHHHHhcCCCccHHHHHHHHHH
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
.+.++|.+||||||+.|..+...
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~~ 82 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVKN 82 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHHT
T ss_pred cCHHHHHHCCCCCHHHHHHHHHc
Confidence 46789999999999999999943
No 50
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=69.62 E-value=3.2 Score=32.60 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=20.3
Q ss_pred hhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 223 PNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 223 p~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
+...+.|..|||||++.+..+|..
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred ccHHHHHHhCCCCCHHHHHHHHHH
Confidence 345678999999999999998864
No 51
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=68.19 E-value=5.9 Score=31.33 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 203 KAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 203 KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
++.....+++.|.. |...+ .+.+++..|+|||+++|..+-.+
T Consensus 36 ~~~~Y~KA~~sLk~-~P~~i-~s~~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 36 TRFVFQKALRSLQR-YPLPL-RSGKEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp THHHHHHHHHHHHH-CCSCC-CSHHHHHTCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCC-CCHHHHHHhhcccHHHHHHHHHH
Confidence 34455666666655 43333 35788899999999999987644
No 52
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=68.06 E-value=1.8 Score=39.71 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.6
Q ss_pred CchhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 221 DIPNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 221 ~ip~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
.+-++.++|..|||||+++|..++.+
T Consensus 126 pITA~~~eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 126 SITTRMHQLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp CBCSSSBGGGGSTTCCHHHHHHHHHH
T ss_pred CccCCHHHHhcCCCcCHHHHHHHHHH
Confidence 45567889999999999999999876
No 53
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=66.63 E-value=7.7 Score=30.41 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHH
Q psy4002 167 AAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA 210 (378)
Q Consensus 167 ~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~l 210 (378)
.-..+|..+|.+++.|.+++.++|.++ +|- ..+|+.|++.
T Consensus 29 kr~~~LL~~FgSl~~i~~AS~eEL~~v---ig~-~~~A~~I~~~ 68 (84)
T 1z00_B 29 KNCRSLMHHVKNIAELAALSQDELTSI---LGN-AANAKQLYDF 68 (84)
T ss_dssp HHHHHHHHHSSCHHHHHHSCHHHHHHH---HSC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHCCHHHHHHH---hCc-hHHHHHHHHH
Confidence 345678889999999999999999888 342 2226666543
No 54
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=66.04 E-value=1.9 Score=34.92 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.8
Q ss_pred hhHHHHhcCCCccHHHHHHHHH
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMN 245 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~ 245 (378)
.+.++|..|||||+++|..+..
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH
T ss_pred CCHHHHhHCCCCCHHHHHHHHH
Confidence 4578999999999999999988
No 55
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=65.95 E-value=15 Score=37.92 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=40.8
Q ss_pred HHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHH----HHHhcCCCchhhHHHHhcCCCccHHHHHHHH
Q psy4002 169 MGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDI----LKKNYNNDIPNTIELLCKLPGVGPKMAHLCM 244 (378)
Q Consensus 169 ~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~----i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l 244 (378)
...|...-..++.+...+.+.+.++ - |....-+.+|..+.+. +.+....+.+..+..|++++||||++|-.++
T Consensus 34 a~~l~~~~~~i~~~~~~~~~~~~~l-p--~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~~v~GvGpk~A~~~~ 110 (575)
T 3b0x_A 34 ARTLYDLDTPIEEIAEKGKEALMEL-P--GVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLY 110 (575)
T ss_dssp HHHHHHCCSCHHHHHTTCHHHHHTS-T--TCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHHTSTTTCHHHHHHHH
T ss_pred HHHHHhCCcchhhHhhcchhHHHhC-C--CCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHhcCCCcCHHHHHHHH
Confidence 3334433346666665543324322 2 3334445555555432 0000111335678899999999999999887
Q ss_pred HH
Q psy4002 245 NH 246 (378)
Q Consensus 245 ~~ 246 (378)
..
T Consensus 111 ~~ 112 (575)
T 3b0x_A 111 EG 112 (575)
T ss_dssp HT
T ss_pred Hh
Confidence 63
No 56
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=65.48 E-value=3.3 Score=33.53 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=38.1
Q ss_pred HHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 180 ENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 180 e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
=+|..++.++|.. |- |+...+|+.|.. .-.| .++++|.+++|||+++.+-+.-+
T Consensus 18 vdiNtAs~~eL~~-lp--GIG~~~A~~IV~-----~GpF-----~s~edL~~V~Gig~~~~e~l~~~ 71 (97)
T 3arc_U 18 IDLNNTNIAAFIQ-YR--GLYPTLAKLIVK-----NAPY-----ESVEDVLNIPGLTERQKQILREN 71 (97)
T ss_dssp EETTTSCGGGGGG-ST--TCTTHHHHHHHH-----HCCC-----SSGGGGGGCTTCCHHHHHHHHHT
T ss_pred eeCCcCCHHHHhH-CC--CCCHHHHHHHHH-----cCCC-----CCHHHHHhccCCCHHHHHHHHHH
Confidence 3566788888864 34 555567777776 1223 37899999999999998887653
No 57
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=65.46 E-value=5 Score=39.43 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHH----HHHhc-CCCchhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 198 GFWKTKAKHIKMASDI----LKKNY-NNDIPNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 198 Gf~~~KA~~I~~lA~~----i~e~y-~g~ip~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
|.....|..|.++.+. -+++. ...+|..+.+|++++|||+++|..+-.-
T Consensus 68 GIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 68 YFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp TCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 3444566666666542 01111 1245777889999999999999987543
No 58
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=63.38 E-value=6.1 Score=38.43 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHH----HHHhcCCCchhhHHHHhcCCCccHHHHHHHHH
Q psy4002 198 GFWKTKAKHIKMASDI----LKKNYNNDIPNTIELLCKLPGVGPKMAHLCMN 245 (378)
Q Consensus 198 Gf~~~KA~~I~~lA~~----i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~ 245 (378)
|.....|..|.++.+. -.+.....+| .++.|++++||||++|..+-.
T Consensus 64 GIG~~~A~kI~E~l~tG~~~~le~l~~~~p-~l~ll~~v~GiG~k~a~~l~~ 114 (335)
T 2bcq_A 64 GIGKRMAEKIIEILESGHLRKLDHISESVP-VLELFSNIWGAGTKTAQMWYQ 114 (335)
T ss_dssp TCCHHHHHHHHHHHHSSSCGGGGGCCTTHH-HHHHHHTSTTCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCchHHHHHhhhhH-HHHHHhcCCCcCHHHHHHHHH
Confidence 4445567777666442 1112223445 566778999999999998754
No 59
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=62.90 E-value=4.8 Score=36.19 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.0
Q ss_pred hhHHHHhcCCCccHHHHHHHHHH
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
.+.++|.+++|||+++|..+..+
T Consensus 191 a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 191 ASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp CCHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHHHHH
Confidence 46788999999999999998765
No 60
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=62.21 E-value=4.2 Score=32.24 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred hHHHHhcCCCccHHHHHHHHHH
Q psy4002 225 TIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 225 ~~e~L~~LpGVGpktA~~~l~~ 246 (378)
+.++|.++||||+++|..++.+
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHH
Confidence 5678999999999999999876
No 61
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=61.88 E-value=9.7 Score=37.91 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHh
Q psy4002 168 AMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKN 217 (378)
Q Consensus 168 ~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~ 217 (378)
..++|.++|.|.++|.+|+.+||.+. . |....||+.|++....+..+
T Consensus 327 iae~Lv~~FGsLq~Il~AS~eEL~~V-e--GIGe~rAr~IregL~r~~~~ 373 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKASVEDLKKV-E--GIGEKRARAISESISSLKHR 373 (377)
T ss_dssp HHHHHHHHHCSHHHHTTCCHHHHTTS-T--TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhCCHHHHHhc-c--CccHHHHHHHHHHHHHHhcc
Confidence 45788899999999999999999644 3 55567999999988877653
No 62
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=61.26 E-value=5.3 Score=39.63 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHH----HHHhcC-CCchhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 198 GFWKTKAKHIKMASDI----LKKNYN-NDIPNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 198 Gf~~~KA~~I~~lA~~----i~e~y~-g~ip~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
|....-|..|.++.+. -.++.. ..+|..+.+|++++|||+++|..+-.-
T Consensus 87 GIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 87 CLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp SCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc
Confidence 4444556666665442 111111 255778889999999999999987543
No 63
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=59.64 E-value=5.5 Score=35.83 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=18.0
Q ss_pred HHHHhcCCCccHHHHHHHHHH
Q psy4002 226 IELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~ 246 (378)
+..|.+++||||++|..+|..
T Consensus 71 f~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 71 FELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp HHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHh
Confidence 456889999999999999864
No 64
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=58.00 E-value=6.1 Score=36.23 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.6
Q ss_pred hHHHHhcCCCccHHHHHHHHHH
Q psy4002 225 TIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 225 ~~e~L~~LpGVGpktA~~~l~~ 246 (378)
.+..|.+++||||++|-.++..
T Consensus 86 lf~~L~sv~GIGpk~A~~Ils~ 107 (212)
T 2ztd_A 86 LFLTLLSVSGVGPRLAMAALAV 107 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCcCCcCHHHHHHHHHh
Confidence 3567889999999999999863
No 65
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=57.50 E-value=7 Score=32.41 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCC-CHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHH
Q psy4002 166 HAAMGRLKEHGL-TIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILK 215 (378)
Q Consensus 166 ~~~~~~L~~~~p-t~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~ 215 (378)
.....+|.+.++ |.+.|+.++.++|.+ --|++..||..|+..|+.+.
T Consensus 35 ~~~i~kL~eAG~~Tve~va~a~~~eL~~---i~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 35 ANDVKKLEEAGFHTVEAVAYAPKKELIN---IKGISEAKADKILAEAAKLV 82 (114)
T ss_dssp HHHHHHHHTTCCSSGGGBTSSBHHHHHT---TTTCSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCcCcHHHHHhCCHHHHHH---ccCCCHHHHHHHHHHHHHHc
Confidence 445677888765 999999999998854 46888889999999998764
No 66
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=55.15 E-value=14 Score=37.85 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=32.9
Q ss_pred HHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHH
Q psy4002 169 MGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMAS 211 (378)
Q Consensus 169 ~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA 211 (378)
.++|.++|+|.+.++.|++++|.+ -|....+|+.|+.+-
T Consensus 481 AeRLLEkFGSVe~Vm~AteDELRe----dGIGekqarrI~gl~ 519 (685)
T 4gfj_A 481 AERLLKKYGGYSKVREAGVEELRE----DGLTDAQIRELKGLK 519 (685)
T ss_dssp HHHHHHHHTSHHHHHHSCHHHHHH----TTCCHHHHHHHHTCH
T ss_pred HHHHHHHhcCHHHHHhCCHHHHHH----ccccHHHHHHHhhHH
Confidence 467888999999999999999944 688788999998763
No 67
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=52.93 E-value=2.9 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=0.0
Q ss_pred hhHHHHhcCCCccHHHHHHHHHHH
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~~a 247 (378)
.+.++|.+++|||+++|..+..|-
T Consensus 558 As~eeL~~I~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 558 ASTDQLAAVEGVGPTIAAAVTEWF 581 (615)
T ss_dssp ------------------------
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHH
Confidence 457899999999999999988763
No 68
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=52.23 E-value=7.9 Score=35.11 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.7
Q ss_pred HHHHhcCCCccHHHHHHHHHH
Q psy4002 226 IELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~ 246 (378)
+..|.+++||||++|-.+|..
T Consensus 72 f~~L~~V~GIGpk~A~~iL~~ 92 (203)
T 1cuk_A 72 FKELIKTNGVGPKLALAILSG 92 (203)
T ss_dssp HHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHhh
Confidence 346788999999999999873
No 69
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=44.85 E-value=39 Score=24.41 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHH
Q psy4002 168 AMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA 210 (378)
Q Consensus 168 ~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~l 210 (378)
...+|.++|.+++.|..++.++|..+ -|+...+|..|...
T Consensus 26 ~a~~Ll~~fgs~~~l~~a~~~~L~~i---~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 26 LARRLLKHFGSVERVFTASVAELMKV---EGIGEKIAKEIRRV 65 (75)
T ss_dssp HHHHHHHHHCSHHHHHHCCHHHHTTS---TTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhcC---CCCCHHHHHHHHHH
Confidence 34556677889999999999988432 36667788777654
No 70
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=44.58 E-value=12 Score=37.21 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHhcCC---CchhhHHHHhcCCCccHHHHHHHHH
Q psy4002 210 ASDILKKNYNN---DIPNTIELLCKLPGVGPKMAHLCMN 245 (378)
Q Consensus 210 lA~~i~e~y~g---~ip~~~e~L~~LpGVGpktA~~~l~ 245 (378)
+|+.|.++||. -+.++.++|.++.|||++.|..+.-
T Consensus 327 iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp HHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 47888888885 2356789999999999999998753
No 71
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=43.01 E-value=12 Score=38.77 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.0
Q ss_pred chhhHHHHhcCCCccHHHHHHHHHH
Q psy4002 222 IPNTIELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 222 ip~~~e~L~~LpGVGpktA~~~l~~ 246 (378)
.+..+.+|++++||||++|..++..
T Consensus 92 ~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 92 LPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp SCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 4667889999999999999998874
No 72
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=42.25 E-value=28 Score=25.99 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=27.7
Q ss_pred HHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHH
Q psy4002 169 MGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA 210 (378)
Q Consensus 169 ~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~l 210 (378)
..+|.+.|.++++|..++.++|.++ -|+...+|..|...
T Consensus 37 A~~Ll~~fgsl~~l~~a~~eeL~~i---~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 37 RQMLLKYMGGLQGLRNASVEEIAKV---PGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHHHSCHHHHHHCCHHHHTTS---SSTTSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHCCHHHHHHC---CCCCHHHHHHHHHH
Confidence 4455666789999999999998543 35555677777654
No 73
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=42.14 E-value=5.3 Score=37.28 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHhcCCCccHHHHHHHHHH
Q psy4002 227 ELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 227 e~L~~LpGVGpktA~~~l~~ 246 (378)
++|.++||||+++|.-++..
T Consensus 48 ~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 48 SALADVSGIGNALAARIKAD 67 (241)
T ss_dssp --------------------
T ss_pred HHHHhccCCCHHHHHHHHHH
Confidence 56778888888888877543
No 74
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=36.84 E-value=73 Score=24.17 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHH
Q psy4002 169 MGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA 210 (378)
Q Consensus 169 ~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~l 210 (378)
..+|.+.|.+++++..++.++|.++ -|+...+|..|...
T Consensus 32 A~~Ll~~fgsl~~l~~a~~~eL~~i---~GIG~~~a~~I~~~ 70 (89)
T 1z00_A 32 SQTLLTTFGSLEQLIAASREDLALC---PGLGPQKARRLFDV 70 (89)
T ss_dssp HHHHHHHTCBHHHHHHCCHHHHHTS---TTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHhCCHHHHHhC---CCCCHHHHHHHHHH
Confidence 4566677889999999999998543 36666777777654
No 75
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=34.53 E-value=48 Score=34.29 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=34.5
Q ss_pred HHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhH-----HHHhcCCCccHHHHHHH
Q psy4002 181 NICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTI-----ELLCKLPGVGPKMAHLC 243 (378)
Q Consensus 181 ~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~-----e~L~~LpGVGpktA~~~ 243 (378)
.+.....+.+.++++--|....+|..|.+. .|. ++.+.. ..|.++||||+|||+-+
T Consensus 87 ~~~~~~~~~~~~L~~v~GVGpk~A~~i~~~------G~~-s~edL~~a~~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 87 AAAGQLPPGLLDLLGVRGLGPKKIRSLWLA------GID-SLERLREAAESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp HHHHHSCHHHHHHTTSTTCCHHHHHHHHHT------TCC-SHHHHHHHHHHTTTTTSTTCCHHHHHHH
T ss_pred HHhhhhHHHHHHHhCCCCcCHHHHHHHHHc------CCC-CHHHHHHHHhhCccccCCCCCHHHHHHH
Confidence 333333456666776677777787777642 111 111111 25778999999999988
No 76
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=33.56 E-value=89 Score=29.45 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=68.3
Q ss_pred hHHHHH--HHHHhccccHHHHHHHHHHHHHhC--CCHHHHhccCHHHHHHhhcccC----ChHHHHHHHHHHHHHHHHhc
Q psy4002 147 RYHVLI--SLMLSSQTKDEVNHAAMGRLKEHG--LTIENICNTSEDVLGKLIIPVG----FWKTKAKHIKMASDILKKNY 218 (378)
Q Consensus 147 pF~~Lv--~~iLsqqt~~~~~~~~~~~L~~~~--pt~e~la~a~~e~L~~~i~~~G----f~~~KA~~I~~lA~~i~e~y 218 (378)
.|..|+ .+|.|-|.+.+-=. -|..|.+-| -++.++. +++...+.... +.++|.++|..+...+. |
T Consensus 46 ~f~~Lvi~NaLvSYQLsgkGEe-~W~~Fs~yfs~~~~~~l~----~~~~~Fl~~s~~n~Rl~~~KikRi~k~~~~~~--~ 118 (256)
T 1xqo_A 46 VGSRLAMLNALISYRLTGKGEE-HWEYFGKYFSQLEVIDLC----RDFLKYIETSPFLKIGVEARKKRALKACDYVP--N 118 (256)
T ss_dssp HHHHHHHHHHHTCCCCTTCHHH-HHHHHHHHHHTSCCSSHH----HHHHHHHHHCTTCCTTHHHHHHHHHHHTTCCC--C
T ss_pred HHHHHHHHHHHHHHhcCCchHH-HHHHHHHHHhcCChhhHH----HHHHHHHhcCchhHHHHHHHHHHHHHHhhhhh--H
Confidence 565543 47888887764222 455444322 1222333 34555555553 44778888887744433 3
Q ss_pred CCCchhhHHHHhcCCCcc---HHHHHH------HHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCcc
Q psy4002 219 NNDIPNTIELLCKLPGVG---PKMAHL------CMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQL 289 (378)
Q Consensus 219 ~g~ip~~~e~L~~LpGVG---pktA~~------~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (378)
-.+++...++|..+-|-. ..++-. ....++|....+| ...| +
T Consensus 119 ~~dl~~l~~~LA~~l~s~~~~KTIVFAvKM~~Ya~r~~~g~~~~~p---~~Ip--------------------------I 169 (256)
T 1xqo_A 119 LEDLGLTLRQLSHIVGARREQKTLVFTIKILNYAYMCSRGVNRVLP---FDIP--------------------------I 169 (256)
T ss_dssp TTCHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHTCCCCCC---TTSC--------------------------C
T ss_pred HHHHHHHHHHHHHHhCCCCCcceeeeHHHHHHHHHHHHcCCCCCCC---CCCC--------------------------C
Confidence 335666667766655543 223333 3333444322111 1222 3
Q ss_pred ccchHHHHHHHHhCCCC
Q psy4002 290 CVDVHVHRISHRLGWTK 306 (378)
Q Consensus 290 ~VD~hv~Ri~~Rlg~~~ 306 (378)
|||.-|..+....|+++
T Consensus 170 PvD~Rv~~lT~~s~l~~ 186 (256)
T 1xqo_A 170 PVDYRVARLTWCAGLID 186 (256)
T ss_dssp CCCHHHHHHHHHTTSCS
T ss_pred CchHHHHHHHHHhcccc
Confidence 79999999999999987
No 77
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=33.23 E-value=1.5e+02 Score=22.36 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=19.7
Q ss_pred HHHHHHhCCC-HHHHhccCHHHHHHh
Q psy4002 169 MGRLKEHGLT-IENICNTSEDVLGKL 193 (378)
Q Consensus 169 ~~~L~~~~pt-~e~la~a~~e~L~~~ 193 (378)
...|.+.+.+ .+.|..+++++|.++
T Consensus 23 ~~~F~~~~~d~~~~l~~lt~~DL~~l 48 (81)
T 1ucv_A 23 RDHFAAGGYSSLGMVLRMNAQDVRAL 48 (81)
T ss_dssp HHHHHHTTCCBHHHHTTCCHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHcCHHHHHhC
Confidence 4456667776 999999999999754
No 78
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=32.79 E-value=22 Score=26.66 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.5
Q ss_pred chhhHHHHhcCCCccHHHHHHH
Q psy4002 222 IPNTIELLCKLPGVGPKMAHLC 243 (378)
Q Consensus 222 ip~~~e~L~~LpGVGpktA~~~ 243 (378)
.|.+.++|..++|||++...-+
T Consensus 42 ~P~t~~eL~~i~Gvg~~k~~~y 63 (77)
T 2rhf_A 42 QPRTLAELAEVPGLGEKRIEAY 63 (77)
T ss_dssp CCCSHHHHTTSTTTCHHHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHHHH
Confidence 4789999999999999876653
No 79
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=32.47 E-value=67 Score=24.61 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=35.2
Q ss_pred hHHHHHHHHH-hccccHHHHHHHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHH
Q psy4002 147 RYHVLISLML-SSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA 210 (378)
Q Consensus 147 pF~~Lv~~iL-sqqt~~~~~~~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~l 210 (378)
.+..++..+. ........ ..+|.+.|.++++|..++.++|.++ . |+...+|..|...
T Consensus 26 ~~~~~~~~L~~IpgIG~~~----A~~Ll~~fgs~~~l~~as~~eL~~i-~--GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 26 FVSRVTECLTTVKSVNKTD----SQTLLTTFGSLEQLIAASREDLALC-P--GLGPQKARRLFDV 83 (91)
T ss_dssp HHHHHHHHHTTSTTCCHHH----HHHHHHHHSSHHHHHSCCHHHHHTS-S--SCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHH----HHHHHHHCCCHHHHHhCCHHHHHhC-C--CCCHHHHHHHHHH
Confidence 4555555542 23333333 3456667789999999999998543 3 4545677777654
No 80
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=31.80 E-value=71 Score=25.56 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=34.9
Q ss_pred CCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Q psy4002 176 GLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKK 216 (378)
Q Consensus 176 ~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e 216 (378)
.+|.+.|.+++.+++.++|...||+..=...|+++-+...+
T Consensus 30 Pfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KN 70 (92)
T 1skn_P 30 PVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKN 70 (92)
T ss_dssp SSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 46999999999999999999999988777778777666544
No 81
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=31.03 E-value=74 Score=25.41 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=36.0
Q ss_pred CCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Q psy4002 176 GLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKK 216 (378)
Q Consensus 176 ~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e 216 (378)
-+|.+.|.+++.+++.++|...||+..-...|+++-+.-..
T Consensus 34 Pfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKN 74 (91)
T 2kz5_A 34 PFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKN 74 (91)
T ss_dssp SSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Confidence 45999999999999999999999998888888888776555
No 82
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=30.09 E-value=11 Score=39.86 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCC--CHHHHhccCHHHHHHhhccc----CChHHHHHHHHHHHHHHHHhcCCCchhhHH-HH--hcCCCc
Q psy4002 165 NHAAMGRLKEHGL--TIENICNTSEDVLGKLIIPV----GFWKTKAKHIKMASDILKKNYNNDIPNTIE-LL--CKLPGV 235 (378)
Q Consensus 165 ~~~~~~~L~~~~p--t~e~la~a~~e~L~~~i~~~----Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e-~L--~~LpGV 235 (378)
..+.++.|.+.++ ++.+|..++.++|..+ ... ||...+|..|.+.-+.-.+ ..+. .| +.||||
T Consensus 466 G~~~i~~L~~~g~i~~~aDly~L~~~~L~~l-~~~~~~~g~g~ksa~nLl~aIe~sk~-------~~l~r~L~aLGIp~V 537 (615)
T 3sgi_A 466 GYEAGVALLQAKVIADEGELFALTERDLLRT-DLFRTKAGELSANGKRLLVNLDKAKA-------APLWRVLVALSIRHV 537 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHCCCcCCHHHHhhCCHHHHhhc-cccccccCccchHHHHHHHHHHHhcC-------CCHHHHHHHcCCCCC
Confidence 3344556666553 6777777777776544 222 3445556555544333222 1233 33 357999
Q ss_pred cHHHHHHHHHHHhcc
Q psy4002 236 GPKMAHLCMNHAWGI 250 (378)
Q Consensus 236 GpktA~~~l~~a~~r 250 (378)
|+++|..++.. |+.
T Consensus 538 G~~~ak~La~~-Fgs 551 (615)
T 3sgi_A 538 GPTAARALATE-FGS 551 (615)
T ss_dssp ---------------
T ss_pred CHHHHHHHHHH-cCC
Confidence 99999877643 443
No 83
>1xg7_A Hypothetical protein; southeast collaboratory for structural genomics, secsg, hyperthermophIle, pyrococcus FU protein structure initiative; 1.88A {Pyrococcus furiosus} SCOP: a.96.1.6
Probab=29.77 E-value=3.2e+02 Score=25.59 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=83.2
Q ss_pred hHHHHHH--HHHhccccHHHHHHHHHHHHHhCC--CHHHHhccCHHHHHHhhcccC----ChHHHHHHHHHHHHHHHHh-
Q psy4002 147 RYHVLIS--LMLSSQTKDEVNHAAMGRLKEHGL--TIENICNTSEDVLGKLIIPVG----FWKTKAKHIKMASDILKKN- 217 (378)
Q Consensus 147 pF~~Lv~--~iLsqqt~~~~~~~~~~~L~~~~p--t~e~la~a~~e~L~~~i~~~G----f~~~KA~~I~~lA~~i~e~- 217 (378)
.|..|+- +|.|-|.+.+- +.-|..|.+-|- .+.+|. +++.+.+...+ +.++|.++|..+...+.+-
T Consensus 49 ~f~~LvI~NaLvSYQLsgkG-Ee~W~~Fs~yfs~~~~~~l~----~~~~~Fl~~S~~n~Rl~~~KikRi~k~~~~l~~L~ 123 (250)
T 1xg7_A 49 MFIKLVIANSLVSYQLTGRG-EDWWWEFARYFSGREVDSIW----KAYGEFLPKSKNNRRLIEAKLNRIRKVEGFLSTLT 123 (250)
T ss_dssp HHHHHHHHHHHTCSSCSSCH-HHHHHHHHHHHTTCCCSCHH----HHHHHHTTTCSSCCSSHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHhcCChhHHH----HHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5665544 78888877542 255555544331 111233 44555666433 4678999999987555431
Q ss_pred ------cCCCchhhHHHHhcCCCcc---HHHHH------HHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhc
Q psy4002 218 ------YNNDIPNTIELLCKLPGVG---PKMAH------LCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKC 282 (378)
Q Consensus 218 ------y~g~ip~~~e~L~~LpGVG---pktA~------~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (378)
|-.+++..+++|..+-|-. ..++- .....++|.....| ...|
T Consensus 124 ~~d~~~y~~dl~~l~~~LA~~l~s~~~~KTIVFAvKM~~Ya~r~~~g~~~p~p---~~Ip-------------------- 180 (250)
T 1xg7_A 124 LKDLEGYYKNMKMLWKALIKIMGSREDSKTIVFTVKMFGYASRIAFSRFIPYP---MEIP-------------------- 180 (250)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHTTSCCCCC---TTSC--------------------
T ss_pred hhhHHHHHhHHHHHHHHHHHHhCCCCCcceeehHHHHHHHHHHHHcCCCCCCC---CCCC--------------------
Confidence 1124555566666554433 23343 34444445322111 1222
Q ss_pred cccCCccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCcccHHHHHHHHH-Hhcch
Q psy4002 283 EKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLV-GFGQQ 340 (378)
Q Consensus 283 ~~~~~~~~VD~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv-~~G~~ 340 (378)
+|||.-|..+..++ ....+..+...+.+.. .--+-.+...+| -+|..
T Consensus 181 ------IPvD~Ri~~~T~kl----~~~~~~~~W~~Va~~s-gIPpLHLDSilW~~lG~~ 228 (250)
T 1xg7_A 181 ------IPEDLRIKSVTSKL----TQEKPTKFWMKIGQES-GVPPLHIDSLIWPLLGNA 228 (250)
T ss_dssp ------CCCCHHHHHHHHTT----CSSCHHHHHHHHHHHH-TCCHHHHHHHHHHHHTTC
T ss_pred ------CcchHHHHHHHHHh----chhHHHHHHHHHHHhc-CCCcceehhHHHHHhcCc
Confidence 37999999999877 1234444444443321 112456777888 78875
No 84
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=29.50 E-value=11 Score=34.82 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhHHHHhcCCCccHHHHHHHHH
Q psy4002 224 NTIELLCKLPGVGPKMAHLCMN 245 (378)
Q Consensus 224 ~~~e~L~~LpGVGpktA~~~l~ 245 (378)
.+.++|.++ |||+++|..+..
T Consensus 202 As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 202 ATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ----------------------
T ss_pred CCHHHHHHc-CCCHHHHHHHHH
Confidence 466778888 888888877654
No 85
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=29.01 E-value=31 Score=28.64 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.9
Q ss_pred HHHHhcCCCccHHHHHHHHHHH
Q psy4002 226 IELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~a 247 (378)
.-.|+.+.|||+.+|..++..+
T Consensus 15 ~~aLt~I~GIG~~~A~~I~~~~ 36 (114)
T 3r8n_M 15 VIALTSIYGVGKTRSKAILAAA 36 (114)
T ss_dssp HHHGGGSTTCCHHHHHHHHHHT
T ss_pred HhhHhhhcCcCHHHHHHHHHHc
Confidence 3568999999999999999764
No 86
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=27.82 E-value=24 Score=27.11 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.5
Q ss_pred chhhHHHHhcCCCccHHHHHH
Q psy4002 222 IPNTIELLCKLPGVGPKMAHL 242 (378)
Q Consensus 222 ip~~~e~L~~LpGVGpktA~~ 242 (378)
.|.+.++|..++|||++-.+-
T Consensus 44 ~P~t~~eL~~i~Gvg~~k~~~ 64 (85)
T 2kv2_A 44 LSSDPEVLLQIDGVTEDKLEK 64 (85)
T ss_dssp CCSCHHHHHTSSSCCHHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHHH
Confidence 578999999999999875553
No 87
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=27.76 E-value=33 Score=29.71 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.6
Q ss_pred HHHhcCCCccHHHHHHHHHHH
Q psy4002 227 ELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 227 e~L~~LpGVGpktA~~~l~~a 247 (378)
-.|+.+.|||+.+|..++..+
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~ 50 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKA 50 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHH
T ss_pred hhHhhhcCCCHHHHHHHHHHc
Confidence 468999999999999999765
No 88
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=26.60 E-value=36 Score=28.40 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=26.6
Q ss_pred cCCcceeeeccccCCccceeeeeEEecccch
Q psy4002 6 MKNKTLTVPVDTTKNGKQKRMHMVVKYDEPK 36 (378)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (378)
|-|.+|+|-|+..+.|..-.+.|+|+|...+
T Consensus 2 ~~~~~l~~~v~~~~~g~~v~~~ltv~N~s~~ 32 (120)
T 3isy_A 2 MENQEVVLSIDAIQEPEQIKFNMSLKNQSER 32 (120)
T ss_dssp --CCSEEEEEEEEECSSCEEEEEEEEECSSS
T ss_pred ccccEEEEEEeeccCCCeEEEEEEEEcCCCC
Confidence 7899999999999999999999999998753
No 89
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=26.02 E-value=96 Score=31.89 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=37.5
Q ss_pred HHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHH---H-HhcCCCccHHHHHHHHHHH
Q psy4002 189 VLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIE---L-LCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 189 ~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e---~-L~~LpGVGpktA~~~l~~a 247 (378)
++.+++.-.|=..-|++..+.+|+.|.. +..++....+ + |.+|||||..++..+-.+.
T Consensus 12 ~~a~~~e~~g~~~~r~~aYr~Aa~~l~~-~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v 73 (575)
T 3b0x_A 12 EIGLMSEFLGDNPFRVRAYHQAARTLYD-LDTPIEEIAEKGKEALMELPGVGPDLAEKILEFL 73 (575)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH-CCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHh-CCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHH
Confidence 3334444445333377778888888876 4445543332 1 9999999999988776653
No 90
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=25.45 E-value=35 Score=26.47 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.6
Q ss_pred chhhHHHHhcCCCccHHHHHH
Q psy4002 222 IPNTIELLCKLPGVGPKMAHL 242 (378)
Q Consensus 222 ip~~~e~L~~LpGVGpktA~~ 242 (378)
.|.+.++|..++|||+..+.-
T Consensus 50 ~P~t~~eL~~i~Gvg~~k~~~ 70 (89)
T 1wud_A 50 MPITASEMLSVNGVGMRKLER 70 (89)
T ss_dssp CCCSHHHHHTSTTCCHHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHHH
Confidence 578999999999999976554
No 91
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=25.38 E-value=85 Score=29.46 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.3
Q ss_pred HHHhcCCCccHHHHHHHHHH
Q psy4002 227 ELLCKLPGVGPKMAHLCMNH 246 (378)
Q Consensus 227 e~L~~LpGVGpktA~~~l~~ 246 (378)
..|.+||||++..|..++..
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~ 256 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEH 256 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH
Confidence 56899999999999998753
No 92
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.24 E-value=87 Score=24.99 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=34.0
Q ss_pred hCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHH
Q psy4002 175 HGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDI 213 (378)
Q Consensus 175 ~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~ 213 (378)
--++.+.|.+++.+++.++|...+|+..-...|+++-+.
T Consensus 33 LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRR 71 (90)
T 2lz1_A 33 IPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRR 71 (90)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 346999999999999999999999998888888887665
No 93
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=25.17 E-value=17 Score=29.03 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=20.2
Q ss_pred HHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 226 IELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
+.+|..||+||++++..+...+...
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s 27 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKT 27 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCC
Confidence 4578899999999999987766554
No 94
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.59 E-value=42 Score=29.19 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.2
Q ss_pred HHHHhcCCCccHHHHHHHHHHH
Q psy4002 226 IELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~a 247 (378)
.-.|+.+.|||+.+|..++.-+
T Consensus 27 ~~ALt~I~GIG~~~A~~I~~~~ 48 (152)
T 3iz6_M 27 MFALTSIKGVGRRFSNIVCKKA 48 (152)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH
T ss_pred HhhhhhccCcCHHHHHHHHHHc
Confidence 4579999999999999999765
No 95
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.33 E-value=39 Score=29.29 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.6
Q ss_pred HHHHhcCCCccHHHHHHHHHHHh
Q psy4002 226 IELLCKLPGVGPKMAHLCMNHAW 248 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~a~ 248 (378)
.-.|+.+.|||+.+|..++..+-
T Consensus 22 ~~aLt~I~GIG~~~A~~I~~~~g 44 (148)
T 3j20_O 22 RWALTAIKGIGINFATMVCRVAG 44 (148)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHT
T ss_pred hhhhhhccCcCHHHHHHHHHHhC
Confidence 45789999999999999997653
No 96
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=22.96 E-value=33 Score=27.58 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.8
Q ss_pred chhhHHHHhcCCCccHHHHHHH
Q psy4002 222 IPNTIELLCKLPGVGPKMAHLC 243 (378)
Q Consensus 222 ip~~~e~L~~LpGVGpktA~~~ 243 (378)
.|.+.++|..++|||++-..-+
T Consensus 52 ~P~t~~eL~~I~Gvg~~K~~~y 73 (103)
T 2e1f_A 52 RPTTVENVKRIDGVSEGKAAML 73 (103)
T ss_dssp CCCSHHHHTTSTTCCHHHHHHT
T ss_pred CCCCHHHHhcCCCCCHHHHHHH
Confidence 4789999999999999877654
No 97
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=22.50 E-value=47 Score=30.53 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=19.5
Q ss_pred HHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 226 IELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
...|..+||||+++|..++.. ||-
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~-FgS 190 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH-FGS 190 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HCS
T ss_pred cccccCCCCcCHHHHHHHHHH-cCC
Confidence 356889999999999998874 554
No 98
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=22.36 E-value=23 Score=28.33 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=20.1
Q ss_pred HHHHhcCCCccHHHHHHHHHHHhcc
Q psy4002 226 IELLCKLPGVGPKMAHLCMNHAWGI 250 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~a~~r 250 (378)
+.+|..||+||+.++..+...+...
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t 27 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKT 27 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCC
Confidence 4578999999999999987765543
No 99
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=22.16 E-value=71 Score=29.34 Aligned_cols=20 Identities=15% Similarity=0.537 Sum_probs=12.7
Q ss_pred hhHHHHhcCCCccH-HHHHHHHH
Q psy4002 224 NTIELLCKLPGVGP-KMAHLCMN 245 (378)
Q Consensus 224 ~~~e~L~~LpGVGp-ktA~~~l~ 245 (378)
.+.++|.++ ||+ ++|..+..
T Consensus 197 As~EeL~~V--IG~~~~A~~I~~ 217 (220)
T 2nrt_A 197 ASLEEIARV--IGSTEIARRVLD 217 (220)
T ss_dssp SCHHHHHHH--HTCHHHHHHHHH
T ss_pred CCHHHHHHH--hChHHHHHHHHH
Confidence 356666666 777 77766654
No 100
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=21.75 E-value=48 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.0
Q ss_pred HHHHhcCCCccHHHHHHHHHHH
Q psy4002 226 IELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 226 ~e~L~~LpGVGpktA~~~l~~a 247 (378)
.-.|+.+.|||+.+|..++..+
T Consensus 29 ~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 29 PIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEeeecccccCHHHHHHHHHHc
Confidence 4578999999999999998764
No 101
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=21.27 E-value=1.1e+02 Score=27.10 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCHHHHhccCHHHHHHhhcccCChHHHHHHHHHH
Q psy4002 167 AAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMA 210 (378)
Q Consensus 167 ~~~~~L~~~~pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~l 210 (378)
....+|.++|.++++|.+++.++|.++ -|+...+|+.|.+.
T Consensus 173 ~~a~~Ll~~fgs~~~l~~a~~e~L~~v---~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 173 RTAERILERFGSLERFFTASKAEISKV---EGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHHHHHHHSSHHHHTTCCHHHHHHS---TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhCCHHHHhhC---CCCCHHHHHHHHHH
Confidence 344567778899999999999998654 36666677777654
No 102
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=20.92 E-value=1.2e+02 Score=33.81 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=36.1
Q ss_pred HHHhccCHHHHHHhhcccCChH------HHHHHHHHHHHHHHHhcCCCchhh------HHHHhcCCCccHHHHHHHHHHH
Q psy4002 180 ENICNTSEDVLGKLIIPVGFWK------TKAKHIKMASDILKKNYNNDIPNT------IELLCKLPGVGPKMAHLCMNHA 247 (378)
Q Consensus 180 e~la~a~~e~L~~~i~~~Gf~~------~KA~~I~~lA~~i~e~y~g~ip~~------~e~L~~LpGVGpktA~~~l~~a 247 (378)
..+++++++++..+ ++|-|+ .-.+.|-....-+...-|-++... ...|..++||||..|..++.+-
T Consensus 660 aElvki~pkdi~si--gvg~yQhdv~q~~L~~~L~~vv~d~VN~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r 737 (1030)
T 3psf_A 660 LEYANLTSEEVRSL--SIHPHQNLLSSEQLSWALETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSL 737 (1030)
T ss_dssp HHHHTSCHHHHHTS--CCCTTGGGSCHHHHHHHHHHHHHHHHHHHCEEHHHHHTCHHHHTTGGGSTTCCHHHHHHHHHHH
T ss_pred HHHhccCcccceee--eccccccccCHHHHHHHHHHHHHhhccccCccHHHhhcCcCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 45666666555211 333221 233344444444444455555444 4566778888888888877543
No 103
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=20.42 E-value=1.9e+02 Score=26.66 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHHHHHHhC-CCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHH
Q psy4002 167 AAMGRLKEHG-LTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKK 216 (378)
Q Consensus 167 ~~~~~L~~~~-pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e 216 (378)
....+|.+++ -|.++++.++.++|.+ ..|++..+|..|.+.|+...+
T Consensus 14 ~~~~kL~~~gi~t~~~~~~~~~~~L~~---~~gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 14 STAEKLVEAGYIDFMKIATATVGELTD---IEGISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp HHHHHHHHHTCCSHHHHHTCCHHHHHT---STTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcHHHHHhCCHHHHHH---hhCcCHHHHHHHHHHHHHhhh
Confidence 4566787776 4999999999999864 468888899999998887644
No 104
>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}
Probab=20.39 E-value=27 Score=31.00 Aligned_cols=17 Identities=24% Similarity=0.642 Sum_probs=14.8
Q ss_pred CCCCCCCCCCccCCccc
Q psy4002 345 QRPSCETCLNKDLCPQG 361 (378)
Q Consensus 345 ~~P~C~~Cpl~~~C~~~ 361 (378)
.++.|..|++.+.|+..
T Consensus 188 ~~~~C~~Cs~~~~C~~~ 204 (206)
T 4ic1_A 188 FNWECKYCIFSVICPAK 204 (206)
T ss_dssp STTSGGGCTTGGGCTTC
T ss_pred CCCCCCCCCCCCcCCCc
Confidence 36899999999999864
No 105
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=20.00 E-value=41 Score=26.91 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.4
Q ss_pred chhhHHHHhcCCCccHHHHH
Q psy4002 222 IPNTIELLCKLPGVGPKMAH 241 (378)
Q Consensus 222 ip~~~e~L~~LpGVGpktA~ 241 (378)
.|.+.++|..++|||+.-..
T Consensus 59 ~P~t~~eL~~I~Gvg~~k~~ 78 (101)
T 2rrd_A 59 LSSDPEVLLQIDGVTEDKLE 78 (101)
T ss_dssp CCCCHHHHHTSTTCCHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHH
Confidence 57899999999999997665
Done!