Your job contains 1 sequence.
>psy4002
MERRSMKNKTLTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNIALNNPLDDKEHN
DNKTQNKKNTLYKSEKLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIREM
RKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIE
NICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMA
HLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISH
RLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQ
GKKELAERVKKSPKKRKS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4002
(378 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-120511-4 - symbol:nthl1 "nth endonuclease I... 469 1.2e-71 2
MGI|MGI:1313275 - symbol:Nthl1 "nth (endonuclease III)-li... 449 5.3e-69 2
UNIPROTKB|F1NQP6 - symbol:NTHL1 "Uncharacterized protein"... 469 6.0e-68 2
UNIPROTKB|Q2KID2 - symbol:NTHL1 "Endonuclease III-like pr... 440 8.7e-67 2
UNIPROTKB|E2QX23 - symbol:NTHL1 "Uncharacterized protein"... 443 2.6e-65 2
UNIPROTKB|P78549 - symbol:NTHL1 "Endonuclease III-like pr... 441 3.3e-65 2
UNIPROTKB|F1RFB3 - symbol:NTHL1 "Uncharacterized protein"... 432 5.4e-65 2
FB|FBgn0032907 - symbol:CG9272 species:7227 "Drosophila m... 337 1.3e-59 2
WB|WBGene00011201 - symbol:nth-1 species:6239 "Caenorhabd... 356 1.1e-54 2
TAIR|locus:2061345 - symbol:ATNTH1 species:3702 "Arabidop... 347 7.8e-54 2
TAIR|locus:2198738 - symbol:NTH2 "endonuclease III 2" spe... 318 5.4e-51 2
POMBASE|SPAC30D11.07 - symbol:nth1 "DNA endonuclease III"... 297 8.6e-47 2
CGD|CAL0001822 - symbol:NTG1 species:5476 "Candida albica... 313 1.2e-45 2
UNIPROTKB|Q5A763 - symbol:NTG1 "Putative uncharacterized ... 313 1.2e-45 2
UNIPROTKB|H3BPD5 - symbol:NTHL1 "Endonuclease III-like pr... 239 7.1e-44 3
RGD|1309289 - symbol:Nthl1 "nth (endonuclease III)-like 1... 455 4.5e-43 1
UNIPROTKB|H3BRL9 - symbol:NTHL1 "Endonuclease III-like pr... 443 8.4e-42 1
DICTYBASE|DDB_G0277247 - symbol:apnB "putative endonuclea... 382 2.4e-35 1
SGD|S000005403 - symbol:NTG2 "DNA N-glycosylase and apuri... 217 3.7e-33 2
SGD|S000000013 - symbol:NTG1 "DNA N-glycosylase and apuri... 229 6.0e-32 2
ASPGD|ASPL0000064583 - symbol:AN10978 species:162425 "Eme... 217 1.8e-28 2
UNIPROTKB|J9P6R3 - symbol:NTHL1 "Uncharacterized protein"... 286 3.6e-25 1
TIGR_CMR|GSU_1450 - symbol:GSU_1450 "endonuclease III, pu... 162 1.5e-23 2
TIGR_CMR|BA_1570 - symbol:BA_1570 "endonuclease III" spec... 157 4.5e-22 2
TIGR_CMR|CJE_0698 - symbol:CJE_0698 "endonuclease III" sp... 151 3.8e-18 2
TIGR_CMR|SPO_3581 - symbol:SPO_3581 "endonuclease III" sp... 132 5.0e-16 2
TIGR_CMR|ECH_0857 - symbol:ECH_0857 "endonuclease III" sp... 135 7.5e-16 2
TIGR_CMR|DET_0935 - symbol:DET_0935 "endonuclease III" sp... 128 4.3e-15 2
TIGR_CMR|NSE_0246 - symbol:NSE_0246 "endonuclease III" sp... 132 1.4e-13 2
UNIPROTKB|P63540 - symbol:nth "Endonuclease III" species:... 120 7.5e-13 2
UNIPROTKB|Q97QE0 - symbol:nth "Endonuclease III" species:... 122 1.4e-12 2
TIGR_CMR|CHY_1121 - symbol:CHY_1121 "endonuclease III" sp... 164 1.4e-11 1
UNIPROTKB|P0AB83 - symbol:nth "endonuclease III; specific... 111 3.3e-11 2
TIGR_CMR|CBU_1697 - symbol:CBU_1697 "endonuclease III" sp... 154 1.6e-09 1
TIGR_CMR|APH_0897 - symbol:APH_0897 "endonuclease III" sp... 142 5.9e-08 1
TIGR_CMR|SO_2514 - symbol:SO_2514 "endonuclease III" spec... 134 7.2e-07 2
TIGR_CMR|BA_0522 - symbol:BA_0522 "A/G-specific adenine g... 101 2.5e-06 2
UNIPROTKB|Q9KT92 - symbol:VC_1011 "Endonuclease III" spec... 130 2.7e-06 1
TIGR_CMR|VC_1011 - symbol:VC_1011 "endonuclease III" spec... 130 2.7e-06 1
DICTYBASE|DDB_G0270764 - symbol:myh "monofunctional DNA g... 116 5.3e-06 2
UNIPROTKB|Q3Z642 - symbol:DET1612 "DNA repair protein, Hh... 89 0.00016 2
TIGR_CMR|DET_1612 - symbol:DET_1612 "DNA repair protein, ... 89 0.00016 2
TIGR_CMR|CJE_1792 - symbol:CJE_1792 "A/G-specific adenine... 88 0.00018 2
>ZFIN|ZDB-GENE-120511-4 [details] [associations]
symbol:nthl1 "nth endonuclease III-like 1 (E. coli)"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR004036 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS01155 SMART:SM00478 SMART:SM00525 ZFIN:ZDB-GENE-120511-4
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
GO:GO:0004519 GeneTree:ENSGT00510000047513 EMBL:CABZ01067150
EMBL:CABZ01067151 IPI:IPI00628612 Ensembl:ENSDART00000062941
Bgee:F1QBP9 Uniprot:F1QBP9
Length = 402
Score = 469 (170.2 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 108/232 (46%), Positives = 141/232 (60%)
Query: 33 DEPKFQQTRCQLEKNIALNNPLDDKEHNDNKTQNKKNTLYKSEKLGK----RTLL---KK 85
D+P + Q EK+I+ DD H N K+T Y + K + LL K+
Sbjct: 26 DDPPKVKAEVQ-EKSIS-----DDPTHAHNPADCVKSTSYNTTSKMKEEPDQALLSPRKR 79
Query: 86 QNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEV 145
H K + E + K EP W+ L+ IREMR DAPVD MG + + PEV
Sbjct: 80 GRGHLK--VEYETEGVGLKREPYDWRTQLSFIREMRSKRDAPVDQMGAEKCYDTQGLPEV 137
Query: 146 RRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAK 205
RRY VLISLMLSSQTKD+V AM RL+EHGL+++ I ++ LGKLI PVGFW+TK K
Sbjct: 138 RRYQVLISLMLSSQTKDQVTAGAMQRLREHGLSVDGILKMDDETLGKLIYPVGFWRTKVK 197
Query: 206 HIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
+IK A+ ++++ + DIPNT+E L +LPGVGPKMAHL M+ AW V+GIG D
Sbjct: 198 YIKQATALIQQEFGGDIPNTVEGLIRLPGVGPKMAHLAMDIAWNQVSGIGVD 249
Score = 274 (101.5 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 50/87 (57%), Positives = 61/87 (70%)
Query: 291 VDVHVHRISHRLGWTKV-FKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSC 349
VD HVHRIS+RLGWTK KTPE+TR+ LE WLP LWSE+N LLVGFGQQ+C P C
Sbjct: 248 VDTHVHRISNRLGWTKKETKTPEETRRALEEWLPRDLWSEINWLLVGFGQQVCLPVGPLC 307
Query: 350 ETCLNKDLCPQGKKEL-AERVKKSPKK 375
CLN+ CP + ++++K SP K
Sbjct: 308 SVCLNQHTCPSAHRSSPSKKIKSSPAK 334
>MGI|MGI:1313275 [details] [associations]
symbol:Nthl1 "nth (endonuclease III)-like 1 (E.coli)"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISO;IDA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006285 "base-excision
repair, AP site formation" evidence=ISO] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=ISO;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016798
"hydrolase activity, acting on glycosyl bonds" evidence=IEA]
[GO:0016829 "lyase activity" evidence=IEA] [GO:0019104 "DNA
N-glycosylase activity" evidence=ISO;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004036 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PROSITE:PS00764 PROSITE:PS01155
SMART:SM00478 SMART:SM00525 MGI:MGI:1313275 GO:GO:0005739
GO:GO:0005634 GO:GO:0046872 GO:GO:0006284 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 GO:GO:0051539 GO:GO:0004519 GO:GO:0003906
BRENDA:4.2.99.18 eggNOG:COG0177 GO:GO:0019104 GO:GO:0006296
HOGENOM:HOG000252209 HOVERGEN:HBG052675 OrthoDB:EOG4933JH
EMBL:AB006812 EMBL:AB009371 EMBL:AJ001617 EMBL:Y09688 EMBL:AK033701
IPI:IPI00136370 UniGene:Mm.148315 ProteinModelPortal:O35980
SMR:O35980 STRING:O35980 PhosphoSite:O35980 PRIDE:O35980
InParanoid:O35980 ChiTaRS:NTHL1 CleanEx:MM_NTHL1
Genevestigator:O35980 GermOnline:ENSMUSG00000041429 Uniprot:O35980
Length = 300
Score = 449 (163.1 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 86/162 (53%), Positives = 109/162 (67%)
Query: 96 DENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLM 155
D K WEP +W++ L NIR MR DAPVD +G +H + P+VRRY VL+SLM
Sbjct: 66 DAEPLKVPVWEPQNWQQQLANIRIMRSKKDAPVDQLGAEHCYDASAPPKVRRYQVLLSLM 125
Query: 156 LSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILK 215
LSSQTKD+V AM RL+ GLT+E+I T +D LG+LI PVGFW+ K K+IK + IL+
Sbjct: 126 LSSQTKDQVTAGAMQRLRARGLTVESILQTDDDTLGRLIYPVGFWRNKVKYIKQTTAILQ 185
Query: 216 KNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
+ Y DIP ++ L LPGVGPKMAHL M AWG ++GI D
Sbjct: 186 QRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVD 227
Score = 269 (99.8 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 50/75 (66%), Positives = 56/75 (74%)
Query: 286 IPQLCVDVHVHRISHRLGWTK-VFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKS 344
I + VD HVHRI++RL WTK + KTPE+TRK LE WLP LWSEVN LLVGFGQQIC
Sbjct: 221 ISGIAVDTHVHRIANRLRWTKKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLP 280
Query: 345 QRPSCETCLNKDLCP 359
P C+ CLNK LCP
Sbjct: 281 VHPRCQACLNKALCP 295
>UNIPROTKB|F1NQP6 [details] [associations]
symbol:NTHL1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006285 "base-excision repair, AP site formation"
evidence=IEA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA] [GO:0019104 "DNA
N-glycosylase activity" evidence=IEA] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR003651
InterPro:IPR004035 InterPro:IPR004036 InterPro:IPR005759
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0005739 GO:GO:0005634 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0051539 GO:GO:0003690 GO:GO:0004519 GO:GO:0003906
GO:GO:0019104 GO:GO:0006296 GO:GO:0006285
GeneTree:ENSGT00510000047513 OMA:CLNQALC EMBL:AADN02023662
IPI:IPI00602448 Ensembl:ENSGALT00000009013 ArrayExpress:F1NQP6
Uniprot:F1NQP6
Length = 251
Score = 469 (170.2 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 88/154 (57%), Positives = 110/154 (71%)
Query: 104 KWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDE 163
KWEP +W++ L IREMR+H DAPVD MG D + P+V RY VL+SLMLSSQTKD+
Sbjct: 25 KWEPENWQQQLERIREMRRHRDAPVDEMGVDKCYDTSAPPQVMRYQVLLSLMLSSQTKDQ 84
Query: 164 VNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP 223
V AAM RL++ GLT+++I + LG++I PVGFW+ K K+IK + ILK+ Y DIP
Sbjct: 85 VTSAAMLRLRQRGLTVDSILQMDDATLGQIIYPVGFWRNKVKYIKQTTAILKQKYGGDIP 144
Query: 224 NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
T+E L KLPGVGPKMAHL MN AW V+GI D
Sbjct: 145 GTVEELVKLPGVGPKMAHLAMNIAWNSVSGIAVD 178
Score = 239 (89.2 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 289 LCVDVHVHRISHRLGWTKV-FKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRP 347
+ VD HVHRI++RL W K + PE+TR LE WLP LW E+N LLVGFGQQ C P
Sbjct: 175 IAVDTHVHRITNRLKWVKKETRYPEETRVALEDWLPRDLWREINWLLVGFGQQTCLPVNP 234
Query: 348 SCETCLNKDLCPQGKK 363
C+ CLN+D+CP K+
Sbjct: 235 RCKECLNQDICPTAKR 250
>UNIPROTKB|Q2KID2 [details] [associations]
symbol:NTHL1 "Endonuclease III-like protein 1" species:9913
"Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0019104
"DNA N-glycosylase activity" evidence=IEA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=IEA] [GO:0006285 "base-excision repair, AP site formation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00478 SMART:SM00525
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0051539 GO:GO:0003690 GO:GO:0004519 GO:GO:0003906
eggNOG:COG0177 GO:GO:0019104 KO:K10773 GO:GO:0006296 GO:GO:0006285
GeneTree:ENSGT00510000047513 HOGENOM:HOG000252209 OMA:CLNQALC
EMBL:BC112681 IPI:IPI00689580 RefSeq:NP_001039862.1 UniGene:Bt.6550
ProteinModelPortal:Q2KID2 STRING:Q2KID2 PRIDE:Q2KID2
Ensembl:ENSBTAT00000049780 GeneID:535203 KEGG:bta:535203 CTD:4913
HOVERGEN:HBG052675 InParanoid:Q2KID2 OrthoDB:EOG4933JH
NextBio:20876660 Uniprot:Q2KID2
Length = 305
Score = 440 (159.9 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 83/153 (54%), Positives = 108/153 (70%)
Query: 105 WEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEV 164
W+P W++ L+NIR MR DAPVD +G +H + +P+VRRY VL+SLMLSSQTKD+V
Sbjct: 80 WQPQDWRQQLDNIRTMRSGKDAPVDQLGAEHCFDPSASPKVRRYQVLLSLMLSSQTKDQV 139
Query: 165 NHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPN 224
AM RL+ GLT+++I T + LG LI PVGFW++K K+IK S IL++ Y+ DIP
Sbjct: 140 TAGAMQRLRARGLTVDSILQTDDSTLGALIYPVGFWRSKVKYIKQTSAILQQRYDGDIPA 199
Query: 225 TIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
++ L LPGVGPKMAHL M AWG V+GI D
Sbjct: 200 SVAELVALPGVGPKMAHLAMAVAWGTVSGIAVD 232
Score = 257 (95.5 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 45/75 (60%), Positives = 55/75 (73%)
Query: 289 LCVDVHVHRISHRLGWTK-VFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRP 347
+ VD HVHRI++RL WTK K+PE+TR+ LE WLP LWSE+N LLVGFGQQ C RP
Sbjct: 229 IAVDTHVHRIANRLRWTKKATKSPEETRRALEEWLPRELWSEINGLLVGFGQQTCLPIRP 288
Query: 348 SCETCLNKDLCPQGK 362
C+ CLN+ LCP +
Sbjct: 289 RCQACLNRALCPAAR 303
>UNIPROTKB|E2QX23 [details] [associations]
symbol:NTHL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0019104 "DNA N-glycosylase activity"
evidence=IEA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA] [GO:0006285 "base-excision
repair, AP site formation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR004035 InterPro:IPR004036 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PROSITE:PS00764 PROSITE:PS01155
SMART:SM00478 SMART:SM00525 GO:GO:0005739 GO:GO:0005634
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0051539 GO:GO:0003690 GO:GO:0004519
GO:GO:0003906 GO:GO:0019104 KO:K10773 GO:GO:0006296 GO:GO:0006285
GeneTree:ENSGT00510000047513 OMA:CLNQALC CTD:4913 EMBL:AAEX03004629
RefSeq:XP_853674.1 Ensembl:ENSCAFT00000030911 GeneID:610981
KEGG:cfa:610981 Uniprot:E2QX23
Length = 312
Score = 443 (161.0 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 92/190 (48%), Positives = 121/190 (63%)
Query: 73 KSEKLGKRTL-LKKQNVHNKDPIPDENDTKKTK----WEPAHWKEVLNNIREMRKHGDAP 127
K+ L KR +K V + P ++ ++ K WEP W++ L NIR MR DAP
Sbjct: 50 KNPSLAKRQRKTQKLKVAYEAPGHEKGESHKALEALGWEPQDWRQQLENIRTMRSGKDAP 109
Query: 128 VDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSE 187
VD +G +H + P+V+RY VL+SLMLSSQTKD+V AM RL+ HGLT+++I T +
Sbjct: 110 VDWLGVEHCHDPSAPPKVQRYQVLLSLMLSSQTKDQVTAGAMQRLRAHGLTVDSILQTDD 169
Query: 188 DVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHA 247
LG LI PVGFW++K K+IK S IL++ Y DIP ++ L LPGVGPKMAHL M A
Sbjct: 170 ATLGSLIYPVGFWRSKVKYIKQTSAILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVA 229
Query: 248 WGIVTGIGKD 257
WG V+GI D
Sbjct: 230 WGTVSGIAVD 239
Score = 240 (89.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 43/72 (59%), Positives = 49/72 (68%)
Query: 289 LCVDVHVHRISHRLGWTKVFKT-PEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRP 347
+ VD HVHRI++RL WT+ T PE TR LE WLP LW E+N LLVGFGQQ C RP
Sbjct: 236 IAVDTHVHRIANRLRWTRTTTTSPEKTRAALEEWLPRELWGEINGLLVGFGQQTCLPVRP 295
Query: 348 SCETCLNKDLCP 359
C CLN+ LCP
Sbjct: 296 RCGACLNRSLCP 307
>UNIPROTKB|P78549 [details] [associations]
symbol:NTHL1 "Endonuclease III-like protein 1" species:9606
"Homo sapiens" [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IDA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IDA] [GO:0019104 "DNA
N-glycosylase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006285 "base-excision repair, AP site formation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0045008 "depyrimidination" evidence=TAS] Reactome:REACT_216
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR004036 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00478 SMART:SM00525
GO:GO:0005739 GO:GO:0005654 GO:GO:0046872 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0051539 GO:GO:0003690 GO:GO:0004519 GO:GO:0003906
BRENDA:4.2.99.18 GO:GO:0045008 eggNOG:COG0177 GO:GO:0019104
KO:K10773 GO:GO:0006296 EMBL:AB014460 EMBL:AC005600
HOGENOM:HOG000252209 OMA:CLNQALC CTD:4913 HOVERGEN:HBG052675
OrthoDB:EOG4933JH EMBL:U79718 EMBL:AF498098 EMBL:AB001575
EMBL:U81285 EMBL:BC003014 EMBL:BC000391 EMBL:Y09687 IPI:IPI00001722
RefSeq:NP_002519.1 UniGene:Hs.66196 ProteinModelPortal:P78549
SMR:P78549 STRING:P78549 PhosphoSite:P78549 DMDM:29840795
PaxDb:P78549 PRIDE:P78549 Ensembl:ENST00000219066 GeneID:4913
KEGG:hsa:4913 UCSC:uc002col.1 GeneCards:GC16M002089 HGNC:HGNC:8028
HPA:CAB025152 MIM:602656 neXtProt:NX_P78549 PharmGKB:PA31811
InParanoid:P78549 PhylomeDB:P78549 GenomeRNAi:4913 NextBio:18903
ArrayExpress:P78549 Bgee:P78549 CleanEx:HS_NTHL1
Genevestigator:P78549 GermOnline:ENSG00000065057 Uniprot:P78549
Length = 312
Score = 441 (160.3 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 85/153 (55%), Positives = 107/153 (69%)
Query: 105 WEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEV 164
WEP W++ L NIR MR DAPVD +G +H + P+VRRY VL+SLMLSSQTKD+V
Sbjct: 87 WEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQV 146
Query: 165 NHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPN 224
AM RL+ GLT+++I T + LGKLI PVGFW++K K+IK S IL+++Y DIP
Sbjct: 147 TAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIPA 206
Query: 225 TIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
++ L LPGVGPKMAHL M AWG V+GI D
Sbjct: 207 SVAELVALPGVGPKMAHLAMAVAWGTVSGIAVD 239
Score = 241 (89.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 43/72 (59%), Positives = 50/72 (69%)
Query: 289 LCVDVHVHRISHRLGWTK-VFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRP 347
+ VD HVHRI++RL WTK K+PE+TR LE WLP LW E+N LLVGFGQQ C P
Sbjct: 236 IAVDTHVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHP 295
Query: 348 SCETCLNKDLCP 359
C CLN+ LCP
Sbjct: 296 RCHACLNQALCP 307
>UNIPROTKB|F1RFB3 [details] [associations]
symbol:NTHL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
[GO:0006296 "nucleotide-excision repair, DNA incision, 5'-to
lesion" evidence=IEA] [GO:0006285 "base-excision repair, AP site
formation" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR004036
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 PROSITE:PS00764
PROSITE:PS01155 SMART:SM00478 SMART:SM00525 GO:GO:0005739
GO:GO:0005634 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0051539 GO:GO:0003690
GO:GO:0004519 GO:GO:0003906 GO:GO:0019104 GO:GO:0006296
GO:GO:0006285 GeneTree:ENSGT00510000047513 OMA:CLNQALC
EMBL:FP102350 Ensembl:ENSSSCT00000008810 Uniprot:F1RFB3
Length = 313
Score = 432 (157.1 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 84/154 (54%), Positives = 105/154 (68%)
Query: 105 WEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAP-EVRRYHVLISLMLSSQTKDE 163
WEP W++ L NIR MR DAPVD +G +H + P +VRRY VL+SLMLSSQTKD+
Sbjct: 87 WEPPDWRKQLENIRAMRSGRDAPVDQLGAEHCYDPSAPPKQVRRYQVLLSLMLSSQTKDQ 146
Query: 164 VNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP 223
V AM RL+ HGLT+++I + LG LI PVGFW++K K+IK S IL++ Y DIP
Sbjct: 147 VTAGAMQRLRAHGLTVDSILQMDDSTLGTLIYPVGFWRSKVKYIKQTSAILQQRYGGDIP 206
Query: 224 NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
++ L LPGVGPKMAHL M AWG V+GI D
Sbjct: 207 ASVPELVALPGVGPKMAHLAMAVAWGTVSGIAVD 240
Score = 248 (92.4 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 45/72 (62%), Positives = 51/72 (70%)
Query: 289 LCVDVHVHRISHRLGWTK-VFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRP 347
+ VD HVHRI+ RL WTK K+PE TR LE WLP LWSE+N LLVGFGQQ C RP
Sbjct: 237 IAVDTHVHRIAGRLKWTKKATKSPEKTRTALEEWLPRELWSEINGLLVGFGQQTCLPVRP 296
Query: 348 SCETCLNKDLCP 359
C+ CLN+ LCP
Sbjct: 297 RCQACLNRALCP 308
>FB|FBgn0032907 [details] [associations]
symbol:CG9272 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000703 "oxidized
pyrimidine nucleobase lesion DNA N-glycosylase activity"
evidence=ISS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004036 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PROSITE:PS01155 SMART:SM00478
SMART:SM00525 EMBL:AE014134 GO:GO:0006284 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 GO:GO:0006974 GO:GO:0051539 GO:GO:0004519 KO:K10773
GeneTree:ENSGT00510000047513 RefSeq:NP_610078.2
ProteinModelPortal:Q9VIH0 SMR:Q9VIH0 IntAct:Q9VIH0 STRING:Q9VIH0
EnsemblMetazoa:FBtr0089944 GeneID:35365 KEGG:dme:Dmel_CG9272
UCSC:CG9272-RA FlyBase:FBgn0032907 InParanoid:Q9VIH0 OMA:QTICTPV
OrthoDB:EOG4ZGMV5 PhylomeDB:Q9VIH0 GenomeRNAi:35365 NextBio:793173
ArrayExpress:Q9VIH0 Bgee:Q9VIH0 Uniprot:Q9VIH0
Length = 388
Score = 337 (123.7 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 73/169 (43%), Positives = 99/169 (58%)
Query: 91 KDPIPDENDTKKTKWEPAH--WKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRY 148
K P+++ + P H W L NIR MR APVD MG A++ + +R+
Sbjct: 139 KQEAPEDSPSFSEVQAP-HPLWFNHLENIRIMRNSRTAPVDTMGCHRCADLKADSKTQRF 197
Query: 149 HVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIK 208
L++LMLSSQTKD+ + AM RLK+ GLT + L L+ PV F+K KAK++K
Sbjct: 198 QNLVALMLSSQTKDQTTYEAMNRLKDRGLTPLKVKEMPVTELENLLHPVSFYKNKAKYLK 257
Query: 209 MASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
+IL Y +DIP+ ++ L LPGVGPKMAH+CM AW +TGIG D
Sbjct: 258 QTVEILTDKYGSDIPDNVKDLVALPGVGPKMAHICMAVAWNKITGIGVD 306
Score = 292 (107.8 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 56/96 (58%), Positives = 64/96 (66%)
Query: 277 ICVRKCEKKIPQLCVDVHVHRISHRLGWT-KVFKTPEDTRKELESWLPESLWSEVNHLLV 335
IC+ KI + VDVHVHR+S+RLGW K K PE TR LE WLP SLWSEVNHL V
Sbjct: 291 ICMAVAWNKITGIGVDVHVHRLSNRLGWVPKPTKEPEQTRVALEKWLPFSLWSEVNHLFV 350
Query: 336 GFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKK 371
GFGQ IC +P+C CLNKD+CP E E+ KK
Sbjct: 351 GFGQTICTPVKPNCGECLNKDICPSAHAETKEKRKK 386
>WB|WBGene00011201 [details] [associations]
symbol:nth-1 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0000703 "oxidized pyrimidine nucleobase lesion DNA
N-glycosylase activity" evidence=IDA] [GO:0045008
"depyrimidination" evidence=IDA] [GO:0034042 "5-formyluracil DNA
N-glycosylase activity" evidence=IDA] [GO:0034043
"5-hydroxymethyluracil DNA N-glycosylase activity" evidence=IDA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IGI]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00478 SMART:SM00525
GO:GO:0005634 GO:GO:0070301 GO:GO:0046872 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 GO:GO:0051539 GO:GO:0004519 GO:GO:0045008
eggNOG:COG0177 EMBL:Z50874 GeneTree:ENSGT00510000047513
HOGENOM:HOG000252209 EMBL:AB518695 PIR:T24131 RefSeq:NP_001254906.1
RefSeq:NP_001254907.1 RefSeq:NP_001254908.1 RefSeq:NP_001254909.1
UniGene:Cel.10201 ProteinModelPortal:P54137 SMR:P54137
STRING:P54137 EnsemblMetazoa:R10E4.5d GeneID:187770
KEGG:cel:CELE_R10E4.5 CTD:187770 WormBase:R10E4.5a
WormBase:R10E4.5b WormBase:R10E4.5c WormBase:R10E4.5d
InParanoid:P54137 OMA:CLNQALC NextBio:936446 ArrayExpress:P54137
GO:GO:0034042 GO:GO:0034043 Uniprot:P54137
Length = 298
Score = 356 (130.4 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 74/148 (50%), Positives = 99/148 (66%)
Query: 110 WKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAM 169
W+ + IR+MRK APVD MG A+ AP V R+ VL++LMLSSQT+DEVN AAM
Sbjct: 30 WRRDVELIRKMRKDMIAPVDTMGCHKLADPLAAPPVHRFQVLVALMLSSQTRDEVNAAAM 89
Query: 170 GRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELL 229
RLK+HGL+I I L ++ PVGF+K KA +++ + ILK +++ DIP++++ L
Sbjct: 90 KRLKDHGLSIGKILEFKVPDLETILCPVGFYKRKAVYLQKTAKILKDDFSGDIPDSLDGL 149
Query: 230 CKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
C LPGVGPKMA+L M AWG GI D
Sbjct: 150 CALPGVGPKMANLVMQIAWGECVGIAVD 177
Score = 226 (84.6 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 45/87 (51%), Positives = 55/87 (63%)
Query: 289 LCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPS 348
+ VD HVHRIS+RLGW K TPE T+K LE LP+S W +NHLLVGFGQ C+ RP
Sbjct: 174 IAVDTHVHRISNRLGWIKT-STPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPK 232
Query: 349 CETCLNKDLCPQGKKELAERVKKSPKK 375
C TCL + CP A+ VK ++
Sbjct: 233 CGTCLCRFTCPSST---AKNVKSETEE 256
>TAIR|locus:2061345 [details] [associations]
symbol:ATNTH1 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA;ISS;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IDA] [GO:0042644 "chloroplast nucleoid" evidence=IDA]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR004036
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 PROSITE:PS00764
PROSITE:PS01155 SMART:SM00278 SMART:SM00478 SMART:SM00525
EMBL:CP002685 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
EMBL:AC007169 GO:GO:0004519 GO:GO:0042644 GO:GO:0019104 KO:K10773
IPI:IPI00540590 PIR:H84720 RefSeq:NP_565725.1 UniGene:At.10180
HSSP:P20625 ProteinModelPortal:Q9SIC4 SMR:Q9SIC4 STRING:Q9SIC4
PRIDE:Q9SIC4 EnsemblPlants:AT2G31450.1 GeneID:817703
KEGG:ath:AT2G31450 TAIR:At2g31450 InParanoid:Q9SIC4 OMA:DIEDFAY
PhylomeDB:Q9SIC4 ProtClustDB:CLSN2688602 Genevestigator:Q9SIC4
Uniprot:Q9SIC4
Length = 379
Score = 347 (127.2 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 84/223 (37%), Positives = 121/223 (54%)
Query: 39 QTRCQLEKNIALNNPLDDKEHNDNKTQN--KKNTLYKSEKLG-KRTLLKKQNVHNKDPIP 95
+TR K P + E K N K L E K+T+ + + +
Sbjct: 63 ETRVYTRKKRLKQEPFEPLEKYSGKGVNTHKLCGLPDIEDFAYKKTIGSPSSSRSTETSI 122
Query: 96 DENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLM 155
K + P +W EVL IR+MR DAPVD+MG D + + + P RR+ VL+ +
Sbjct: 123 TVTSVKTAGYPPENWVEVLEGIRQMRSSEDAPVDSMGCDKAGSF-LPPTERRFAVLLGAL 181
Query: 156 LSSQTKDEVNHAAMGRLKEHGL-TIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDIL 214
LSSQTKD+VN+AA+ RL ++GL T E + E + +LI PVGF+ KA ++K + I
Sbjct: 182 LSSQTKDQVNNAAIHRLHQNGLLTPEAVDKADESTIKELIYPVGFYTRKATYMKKIARIC 241
Query: 215 KKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
Y+ DIP++++ L LPG+GPKMAHL ++ AW V GI D
Sbjct: 242 LVKYDGDIPSSLDDLLSLPGIGPKMAHLILHIAWNDVQGICVD 284
Score = 227 (85.0 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 47/96 (48%), Positives = 55/96 (57%)
Query: 289 LCVDVHVHRISHRLGW-----TKVFKT-PEDTRKELESWLPESLWSEVNHLLVGFGQQIC 342
+CVD HVHRI +RLGW TK T PE+TR L+ WLP+ W +N LLVGFGQ IC
Sbjct: 281 ICVDTHVHRICNRLGWVSRPGTKQKTTSPEETRVALQQWLPKEEWVAINPLLVGFGQMIC 340
Query: 343 KSQRPSCETCLNKDLCPQGKKELAERVKKSPKKRKS 378
RP CE C LCP KE + K K +S
Sbjct: 341 TPIRPRCEACSVSKLCPAAFKETSSPSSKLKKSNRS 376
>TAIR|locus:2198738 [details] [associations]
symbol:NTH2 "endonuclease III 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA;ISS;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IDA] [GO:0042644 "chloroplast nucleoid" evidence=IDA]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR003651 InterPro:IPR004036 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PROSITE:PS01155 SMART:SM00278
SMART:SM00478 SMART:SM00525 EMBL:CP002684 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539 GO:GO:0004519
GO:GO:0042644 GO:GO:0019104 KO:K10773 EMBL:AK316958 IPI:IPI00534650
RefSeq:NP_973767.1 UniGene:At.26529 ProteinModelPortal:B9DFZ0
PRIDE:B9DFZ0 EnsemblPlants:AT1G05900.2 GeneID:837100
KEGG:ath:AT1G05900 TAIR:At1g05900 OMA:CGINNIC PhylomeDB:B9DFZ0
Genevestigator:Q3EDI2 Uniprot:B9DFZ0
Length = 386
Score = 318 (117.0 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 67/152 (44%), Positives = 98/152 (64%)
Query: 107 PAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNH 166
P +W++VL IR+M+ +APV+A+ D + + + P+ RR++VLI +LSSQTK+ +
Sbjct: 141 PENWEKVLEGIRKMKPSEEAPVNAVECDRTGSF-LPPKERRFYVLIGTLLSSQTKEHITG 199
Query: 167 AAMGRLKEHGL-TIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNT 225
AA+ RL ++GL T E I E + +LI PVGF+ KA ++K + I Y+ DIP T
Sbjct: 200 AAVERLHQNGLLTPEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLMEYDGDIPRT 259
Query: 226 IELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
+E L LPGVGPK+AHL ++ AW V GI D
Sbjct: 260 LEELLSLPGVGPKIAHLVLHVAWNDVQGICVD 291
Score = 229 (85.7 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 49/99 (49%), Positives = 61/99 (61%)
Query: 289 LCVDVHVHRISHRLGW-----TKVFKT--PEDTRKELESWLPESLWSEVNHLLVGFGQQI 341
+CVD HVHRI +RLGW TK KT PE+TR L+ WLP+ W +N LLVGFGQ I
Sbjct: 288 ICVDTHVHRICNRLGWVSKPGTKQ-KTSSPEETRVALQQWLPKGEWVAINFLLVGFGQTI 346
Query: 342 CKSQRPSCETCLNKDLCPQGKKEL---AERVKKSPKKRK 377
C RP C TC ++CP KE + ++KKS K +K
Sbjct: 347 CTPLRPHCGTCSITEICPSAFKETPSTSSKLKKSIKSKK 385
>POMBASE|SPAC30D11.07 [details] [associations]
symbol:nth1 "DNA endonuclease III" species:4896
"Schizosaccharomyces pombe" [GO:0000703 "oxidized pyrimidine
nucleobase lesion DNA N-glycosylase activity" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005759 "mitochondrial matrix" evidence=ISS] [GO:0006285
"base-excision repair, AP site formation" evidence=IMP;IDA]
[GO:0008534 "oxidized purine nucleobase lesion DNA N-glycosylase
activity" evidence=IMP] [GO:0034039 "8-oxo-7,8-dihydroguanine DNA
N-glycosylase activity" evidence=IDA] [GO:0034042 "5-formyluracil
DNA N-glycosylase activity" evidence=IDA] [GO:0034043
"5-hydroxymethyluracil DNA N-glycosylase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR004036
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 PROSITE:PS00764
PROSITE:PS01155 SMART:SM00478 SMART:SM00525 PomBase:SPAC30D11.07
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005759
GO:GO:0046872 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
GO:GO:0004519 eggNOG:COG0177 KO:K10773 GO:GO:0034039 GO:GO:0006285
HOGENOM:HOG000252209 OrthoDB:EOG4T1MWS GO:GO:0034042 GO:GO:0034043
EMBL:AB191154 PIR:JC6066 RefSeq:NP_593210.1
ProteinModelPortal:Q09907 STRING:Q09907 EnsemblFungi:SPAC30D11.07.1
GeneID:2543510 KEGG:spo:SPAC30D11.07 OMA:CSECLNK NextBio:20804520
Uniprot:Q09907
Length = 355
Score = 297 (109.6 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 69/154 (44%), Positives = 90/154 (58%)
Query: 107 PAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNH 166
P +W+EV + I +M+ APVD G H+ P+ R+ L++LMLSSQTKD V
Sbjct: 9 PENWREVYDEICKMKAKVVAPVDVQGC-HTLGERNDPKKFRFQTLVALMLSSQTKDIVLG 67
Query: 167 AAMGRLKEH---GLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIP 223
M LKE GL +E+I N E L KLI VGF K ++K + IL + + DIP
Sbjct: 68 PTMRNLKEKLAGGLCLEDIQNIDEVSLNKLIEKVGFHNRKTIYLKQMARILSEKFQGDIP 127
Query: 224 NTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
+T+E L LPGVGPKM +LCM+ AW GIG D
Sbjct: 128 DTVEDLMTLPGVGPKMGYLCMSIAWNKTVGIGVD 161
Score = 210 (79.0 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 43/90 (47%), Positives = 53/90 (58%)
Query: 277 ICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVG 336
+C+ K + VDVHVHRI + L W KT E TR L+SWLP+ LW E+NH LVG
Sbjct: 146 LCMSIAWNKTVGIGVDVHVHRICNLLHWCNT-KTEEQTRAALQSWLPKELWFELNHTLVG 204
Query: 337 FGQQICKSQRPSCETCL--NKDLCPQGKKE 364
FGQ IC + C+ C +K LCP KE
Sbjct: 205 FGQTICLPRGRRCDMCTLSSKGLCPSAFKE 234
>CGD|CAL0001822 [details] [associations]
symbol:NTG1 species:5476 "Candida albicans" [GO:0000703
"oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity"
evidence=ISA] [GO:0006285 "base-excision repair, AP site formation"
evidence=IEA;ISA] [GO:0005634 "nucleus" evidence=IEA] [GO:0034043
"5-hydroxymethyluracil DNA N-glycosylase activity" evidence=IEA]
[GO:0034039 "8-oxo-7,8-dihydroguanine DNA N-glycosylase activity"
evidence=IEA] [GO:0034042 "5-formyluracil DNA N-glycosylase
activity" evidence=IEA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR004036 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS01155 SMART:SM00478 CGD:CAL0001822 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0004519
eggNOG:COG0177 KO:K10773 GO:GO:0000703 GO:GO:0006285
RefSeq:XP_717561.1 RefSeq:XP_717635.1 ProteinModelPortal:Q5A763
STRING:Q5A763 GeneID:3640746 GeneID:3640793 KEGG:cal:CaO19.12564
KEGG:cal:CaO19.5098 Uniprot:Q5A763
Length = 320
Score = 313 (115.2 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 85/212 (40%), Positives = 110/212 (51%)
Query: 60 NDNKTQNKKNTLYKSE-KLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIR 118
+D +K+ L E ++ T NV K D D K P W E+ N +
Sbjct: 9 SDTSGSSKRIKLEHIEVEIESETTELAPNVFTK---VDPEDMAKCNGPPK-WSEIYNQLV 64
Query: 119 EMRKHGDAPVDAMGWDHSANV---DIA---PEVRRYHVLISLMLSSQTKDEVNHAAM--- 169
MR APVD G + N +I P++ R+ +LISLMLSSQTKDEVN+ AM
Sbjct: 65 WMRSKFFAPVDTQGCERMPNTINRNIKTRNPKIYRFQLLISLMLSSQTKDEVNYEAMKNL 124
Query: 170 --GRLKEH--GLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNT 225
G LK H GL IE++ SE + I VGF KA++I+ IL +N++ DIP T
Sbjct: 125 HNGLLKVHPDGLCIESVLKLSESEIDAYIKKVGFHNRKAQYIRKTCSILMENHDGDIPKT 184
Query: 226 IELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
IE + LPGVGPKM L + WGI GIG D
Sbjct: 185 IEEIVALPGVGPKMGFLLLQSGWGINAGIGVD 216
Score = 183 (69.5 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 40/95 (42%), Positives = 56/95 (58%)
Query: 291 VDVHVHRISHRLGWTKV-FKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSC 349
VDVH+HR++ GW TPE R EL+ WLP+ W+++N L+VGFGQ IC + +C
Sbjct: 215 VDVHLHRLALMWGWVSPKANTPEKARIELQEWLPKDYWTDINPLVVGFGQVICVPRAANC 274
Query: 350 ETC-LNKD-LCPQGKKELA------ERVKKSPKKR 376
+ C L +D LC K+L ER+ K K+R
Sbjct: 275 DICTLARDGLCKGVNKKLLKTPLSEERINKLSKQR 309
>UNIPROTKB|Q5A763 [details] [associations]
symbol:NTG1 "Putative uncharacterized protein NTG1"
species:237561 "Candida albicans SC5314" [GO:0000703 "oxidized
pyrimidine nucleobase lesion DNA N-glycosylase activity"
evidence=ISA] [GO:0006285 "base-excision repair, AP site formation"
evidence=ISA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR004036 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS01155 SMART:SM00478 CGD:CAL0001822 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0004519
eggNOG:COG0177 KO:K10773 GO:GO:0000703 GO:GO:0006285
RefSeq:XP_717561.1 RefSeq:XP_717635.1 ProteinModelPortal:Q5A763
STRING:Q5A763 GeneID:3640746 GeneID:3640793 KEGG:cal:CaO19.12564
KEGG:cal:CaO19.5098 Uniprot:Q5A763
Length = 320
Score = 313 (115.2 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 85/212 (40%), Positives = 110/212 (51%)
Query: 60 NDNKTQNKKNTLYKSE-KLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIR 118
+D +K+ L E ++ T NV K D D K P W E+ N +
Sbjct: 9 SDTSGSSKRIKLEHIEVEIESETTELAPNVFTK---VDPEDMAKCNGPPK-WSEIYNQLV 64
Query: 119 EMRKHGDAPVDAMGWDHSANV---DIA---PEVRRYHVLISLMLSSQTKDEVNHAAM--- 169
MR APVD G + N +I P++ R+ +LISLMLSSQTKDEVN+ AM
Sbjct: 65 WMRSKFFAPVDTQGCERMPNTINRNIKTRNPKIYRFQLLISLMLSSQTKDEVNYEAMKNL 124
Query: 170 --GRLKEH--GLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNT 225
G LK H GL IE++ SE + I VGF KA++I+ IL +N++ DIP T
Sbjct: 125 HNGLLKVHPDGLCIESVLKLSESEIDAYIKKVGFHNRKAQYIRKTCSILMENHDGDIPKT 184
Query: 226 IELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
IE + LPGVGPKM L + WGI GIG D
Sbjct: 185 IEEIVALPGVGPKMGFLLLQSGWGINAGIGVD 216
Score = 183 (69.5 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 40/95 (42%), Positives = 56/95 (58%)
Query: 291 VDVHVHRISHRLGWTKV-FKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSC 349
VDVH+HR++ GW TPE R EL+ WLP+ W+++N L+VGFGQ IC + +C
Sbjct: 215 VDVHLHRLALMWGWVSPKANTPEKARIELQEWLPKDYWTDINPLVVGFGQVICVPRAANC 274
Query: 350 ETC-LNKD-LCPQGKKELA------ERVKKSPKKR 376
+ C L +D LC K+L ER+ K K+R
Sbjct: 275 DICTLARDGLCKGVNKKLLKTPLSEERINKLSKQR 309
>UNIPROTKB|H3BPD5 [details] [associations]
symbol:NTHL1 "Endonuclease III-like protein 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004036 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PROSITE:PS01155 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
GO:GO:0004519 HGNC:HGNC:8028 EMBL:AC093513 Ensembl:ENST00000566380
Uniprot:H3BPD5
Length = 236
Score = 239 (89.2 bits), Expect = 7.1e-44, Sum P(3) = 7.1e-44
Identities = 43/70 (61%), Positives = 49/70 (70%)
Query: 291 VDVHVHRISHRLGWTK-VFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSC 349
VD HVHRI++RL WTK K+PE+TR LE WLP LW E+N LLVGFGQQ C P C
Sbjct: 162 VDTHVHRIANRLRWTKKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRC 221
Query: 350 ETCLNKDLCP 359
CLN+ LCP
Sbjct: 222 HACLNQALCP 231
Score = 159 (61.0 bits), Expect = 7.1e-44, Sum P(3) = 7.1e-44
Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 201 KTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGI 254
K+K K+IK S IL+++Y DIP ++ L LPGVGPKMAHL M AWG V+GI
Sbjct: 106 KSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGI 159
Score = 98 (39.6 bits), Expect = 7.1e-44, Sum P(3) = 7.1e-44
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 105 WEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPE 144
WEP W++ L NIR MR DAPVD +G +H + P+
Sbjct: 67 WEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAPPK 106
>RGD|1309289 [details] [associations]
symbol:Nthl1 "nth (endonuclease III)-like 1 (E.coli)"
species:10116 "Rattus norvegicus" [GO:0003690 "double-stranded DNA
binding" evidence=IEA;ISO] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA;ISO] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006285 "base-excision repair, AP site formation"
evidence=IEA;ISO] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA;ISO] [GO:0019104 "DNA
N-glycosylase activity" evidence=IEA;ISO] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR004036
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 PROSITE:PS01155
SMART:SM00478 SMART:SM00525 RGD:1309289 GO:GO:0005739 GO:GO:0005634
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0051539 GO:GO:0003690 GO:GO:0004519
GO:GO:0003906 EMBL:CH473948 GO:GO:0019104 KO:K10773 GO:GO:0006296
GO:GO:0006285 GeneTree:ENSGT00510000047513 OMA:CLNQALC CTD:4913
OrthoDB:EOG4933JH IPI:IPI00189546 RefSeq:NP_001099198.1
UniGene:Rn.14632 Ensembl:ENSRNOT00000016490 GeneID:29541
KEGG:rno:29541 UCSC:RGD:1309289 NextBio:609539 Uniprot:D4A4E8
Length = 300
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 101/225 (44%), Positives = 138/225 (61%)
Query: 73 KSEKLGKRTLLKKQNVH------NKDPIPDENDTKKTKWEPAHWKEVLNNIREMRKHGDA 126
KS K +R KKQ VH N + D K WEP +W++ L NIR MR DA
Sbjct: 38 KSHKPVRRPR-KKQKVHVAYEVANGEEGEDAEPLKVPVWEPQNWQQQLANIRIMRSKKDA 96
Query: 127 PVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTS 186
PVD +G + ++ P+VRRY VL+SLMLSSQTKD+V AM RL+ GLT+E+I T
Sbjct: 97 PVDQLGAEQCYDITAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVESILQTD 156
Query: 187 EDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNH 246
+D+LG+LI PVGFW++K K IK + IL++ Y DIP ++ L LPGVGPKMAHL M
Sbjct: 157 DDLLGRLIYPVGFWRSKVKFIKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAV 216
Query: 247 AWGIVTGIGKDESRQPILSPS--SRQISRSELICVRKCEKKIPQL 289
AWG V+GI D I + ++++++S R E+ +P++
Sbjct: 217 AWGTVSGIAVDTHVHRIANRLKWTKKMTKSPEETRRNLEEWLPRV 261
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 46/72 (63%), Positives = 55/72 (76%)
Query: 289 LCVDVHVHRISHRLGWTK-VFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRP 347
+ VD HVHRI++RL WTK + K+PE+TR+ LE WLP LWSE+N LLVGFGQQIC P
Sbjct: 224 IAVDTHVHRIANRLKWTKKMTKSPEETRRNLEEWLPRVLWSEINGLLVGFGQQICLPVHP 283
Query: 348 SCETCLNKDLCP 359
C+ CLNK LCP
Sbjct: 284 RCQACLNKALCP 295
>UNIPROTKB|H3BRL9 [details] [associations]
symbol:NTHL1 "Endonuclease III-like protein 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR004036 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS01155 SMART:SM00478 GO:GO:0006284 Gene3D:1.10.340.30
SUPFAM:SSF48150 GO:GO:0003677 GO:GO:0004519 HGNC:HGNC:8028
EMBL:AC093513 Ensembl:ENST00000561841 Uniprot:H3BRL9
Length = 218
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 85/151 (56%), Positives = 107/151 (70%)
Query: 105 WEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEV 164
WEP W++ L NIR MR DAPVD +G +H + P+VRRY VL+SLMLSSQTKD+V
Sbjct: 53 WEPQDWQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQV 112
Query: 165 NHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPN 224
AM RL+ GLT+++I T + LGKLI PVGFW++K K+IK S IL+++Y DIP
Sbjct: 113 TAGAMQRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGGDIPA 172
Query: 225 TIELLCKLPGVGPKMAHLCMNHAWGIVTGIG 255
++ L LPGVGPKMAHL M AWG V+GIG
Sbjct: 173 SVAELVALPGVGPKMAHLAMAVAWGTVSGIG 203
>DICTYBASE|DDB_G0277247 [details] [associations]
symbol:apnB "putative endonuclease III" species:44689
"Dictyostelium discoideum" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR004035 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS00764 SMART:SM00478 SMART:SM00525 dictyBase:DDB_G0277247
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677
GenomeReviews:CM000151_GR GO:GO:0051539 GO:GO:0004519
EMBL:AAFI02000019 eggNOG:COG0177 KO:K10773 OMA:CSECLNK
RefSeq:XP_642760.1 ProteinModelPortal:Q86K43 STRING:Q86K43
EnsemblProtists:DDB0232975 GeneID:8620949 KEGG:ddi:DDB_G0277247
InParanoid:Q86K43 ProtClustDB:CLSZ2846854 Uniprot:Q86K43
Length = 349
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 91/248 (36%), Positives = 135/248 (54%)
Query: 11 LTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNIALNNPLDDKEHNDNKTQNKKNT 70
LT T K+ + ++K ++ K + EK L D K + K + KN
Sbjct: 25 LTTVTTTIKDKNDETPKKIIKREQIKIEYE----EKEEELEEKGDKKRQRNKKEKKIKND 80
Query: 71 LYKSEKLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDA 130
+ K E+ K +++ + + N K HWKEV + I+ MR APVD
Sbjct: 81 IKKEEEEEKEEEEEEKVIEDIKIKTHINGISLAK---IHWKEVWDKIKIMRSENLAPVDT 137
Query: 131 MGWDHSANVD-IAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDV 189
+G + S N D I P +R+H+L+ +LSSQTKD + HAA+ RLKE+GLT++ + +
Sbjct: 138 LGAE-SFNQDNIEPIEKRFHILVGCLLSSQTKDAITHAAVVRLKEYGLTVDKMLTIDTNE 196
Query: 190 LGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
L L+ PVGF+K KA ++K ++ILK YN DIP T + + +LPG+GPKM +L + AWG
Sbjct: 197 LETLLYPVGFYKRKAIYLKKIAEILKNKYNGDIPPTFKEIEQLPGIGPKMTNLIVQIAWG 256
Query: 250 IVTGIGKD 257
V GI D
Sbjct: 257 RVEGIAVD 264
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 62/140 (44%), Positives = 81/140 (57%)
Query: 238 KMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHR 297
K+A + N G + K+ + P + P + LI V+ ++ + VDVH+HR
Sbjct: 216 KIAEILKNKYNGDIPPTFKEIEQLPGIGPKM-----TNLI-VQIAWGRVEGIAVDVHMHR 269
Query: 298 ISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDL 357
IS+RLGW K KTPE+T K+LESWLP+ W+ VNHLLVGFGQ IC P C CL +L
Sbjct: 270 ISNRLGWVKT-KTPEETMKDLESWLPKENWATVNHLLVGFGQTICSPVNPKCSNCLVNNL 328
Query: 358 CPQGKKELAERVKKSPKKRK 377
CP G E+ KK KK K
Sbjct: 329 CPVGIIEMNSSKKKIKKKIK 348
>SGD|S000005403 [details] [associations]
symbol:NTG2 "DNA N-glycosylase and apurinic/apyrimidinic (AP)
lyase" species:4932 "Saccharomyces cerevisiae" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IEA;IDA] [GO:0006285
"base-excision repair, AP site formation" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0000703 "oxidized pyrimidine
nucleobase lesion DNA N-glycosylase activity" evidence=ISS;IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016798 "hydrolase activity, acting on glycosyl
bonds" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004036 InterPro:IPR011257
Pfam:PF00730 PROSITE:PS00764 PROSITE:PS01155 SMART:SM00478
SMART:SM00525 SGD:S000005403 GO:GO:0005634 EMBL:BK006948
GO:GO:0046872 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0051539 GO:GO:0004519
eggNOG:COG0177 KO:K10773 GO:GO:0000703 GO:GO:0006285
GeneTree:ENSGT00510000047513 HOGENOM:HOG000252209 EMBL:Z74785
PIR:S66728 RefSeq:NP_014599.1 ProteinModelPortal:Q08214 SMR:Q08214
DIP:DIP-2956N IntAct:Q08214 MINT:MINT-570318 STRING:Q08214
PeptideAtlas:Q08214 EnsemblFungi:YOL043C GeneID:854114
KEGG:sce:YOL043C CYGD:YOL043c OMA:CDLCLAN OrthoDB:EOG4T1MWS
NextBio:975807 Genevestigator:Q08214 GermOnline:YOL043C
Uniprot:Q08214
Length = 380
Score = 217 (81.4 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 42/87 (48%), Positives = 53/87 (60%)
Query: 286 IPQLCVDVHVHRISHRLGWTKVFK--TPEDTRKELESWLPESLWSEVNHLLVGFGQQICK 343
I +CVDVHVHR+ W K T E TRKEL+ WLP SLW E+N +LVGFGQ IC
Sbjct: 261 IAGICVDVHVHRLCKMWNWVDPIKCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQLICM 320
Query: 344 SQRPSCETCLNKDLCPQGKKELAERVK 370
++ C+ CL D+C ++L E K
Sbjct: 321 ARGKRCDLCLANDVCNARNEKLIESSK 347
Score = 204 (76.9 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 136 SANVDIAPEVRRYHVLISLMLSSQTKDE--------VNHAAMGRLK-EHGLTIENICNTS 186
S VD P+ R LI MLS+QT+DE + + LK G+T++ +
Sbjct: 139 SEKVD--PKNFRLQFLIGTMLSAQTRDERMAQAALNITEYCLNTLKIAEGITLDGLLKID 196
Query: 187 EDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNH 246
E VL LI V F+ KA IK + +L N+++DIP IE + LPGVGPKM +L +
Sbjct: 197 EPVLANLIRCVSFYTRKANFIKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQK 256
Query: 247 AWGIVTGIGKD 257
WG++ GI D
Sbjct: 257 GWGLIAGICVD 267
Score = 73 (30.8 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 31/102 (30%), Positives = 44/102 (43%)
Query: 107 PAHWKEVLNNIREMRKHGDAPVDAMGWD-------HSANVD---IAPEVRRYHVLISLML 156
P + + N +R MR PVDAMG + + + P+ R LI ML
Sbjct: 98 PESFLPIYNRVRLMRSKVKTPVDAMGCSMIPVLVSNKCGIPSEKVDPKNFRLQFLIGTML 157
Query: 157 SSQTKDEVNHAAMGRLKEHGLTIENICN-TSEDVLGKLIIPV 197
S+QT+DE A + E+ L I + D L K+ PV
Sbjct: 158 SAQTRDERMAQAALNITEYCLNTLKIAEGITLDGLLKIDEPV 199
>SGD|S000000013 [details] [associations]
symbol:NTG1 "DNA N-glycosylase and apurinic/apyrimidinic (AP)
lyase" species:4932 "Saccharomyces cerevisiae" [GO:0006284
"base-excision repair" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0008534 "oxidized purine
nucleobase lesion DNA N-glycosylase activity" evidence=IDA]
[GO:0000703 "oxidized pyrimidine nucleobase lesion DNA
N-glycosylase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016798 "hydrolase activity,
acting on glycosyl bonds" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IDA] [GO:0090297
"positive regulation of mitochondrial DNA replication"
evidence=IMP] [GO:0034599 "cellular response to oxidative stress"
evidence=IMP] [GO:0006285 "base-excision repair, AP site formation"
evidence=IDA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR004036 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PROSITE:PS01155 SMART:SM00478 SGD:S000000013 GO:GO:0005739
GO:GO:0005634 EMBL:L05146 EMBL:BK006935 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 GO:GO:0034599 GO:GO:0004519 eggNOG:COG0177 KO:K10773
GO:GO:0008534 GO:GO:0000703 GO:GO:0006285 GO:GO:0090297 PIR:S36719
RefSeq:NP_009387.1 ProteinModelPortal:P31378 SMR:P31378
DIP:DIP-6614N IntAct:P31378 MINT:MINT-673918 STRING:P31378
PaxDb:P31378 EnsemblFungi:YAL015C GeneID:851218 KEGG:sce:YAL015C
CYGD:YAL015c GeneTree:ENSGT00510000047513 HOGENOM:HOG000252209
OMA:LNIMRYC OrthoDB:EOG432477 NextBio:968109 Genevestigator:P31378
GermOnline:YAL015C Uniprot:P31378
Length = 399
Score = 229 (85.7 bits), Expect = 6.0e-32, Sum P(2) = 6.0e-32
Identities = 55/126 (43%), Positives = 73/126 (57%)
Query: 141 IAPEVRRYHVLISLMLSSQTKDEVNHAAMGRL---------KEHGLTIENICNTSEDVLG 191
I+P R VL+ +MLSSQTKDEV AM + E G+T+E + +E L
Sbjct: 137 ISPRDYRLQVLLGVMLSSQTKDEVTAMAMLNIMRYCIDELHSEEGMTLEAVLQINETKLD 196
Query: 192 KLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIV 251
+LI VGF KAK+I IL+ +++D+P TI L LPGVGPKMA+L + AWG +
Sbjct: 197 ELIHSVGFHTRKAKYILSTCKILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKI 256
Query: 252 TGIGKD 257
GI D
Sbjct: 257 EGICVD 262
Score = 179 (68.1 bits), Expect = 6.0e-32, Sum P(2) = 6.0e-32
Identities = 43/110 (39%), Positives = 63/110 (57%)
Query: 277 ICVRKCEKKIPQLCVDVHVHRISHRLGWTKV--FKTPEDTRKELESWLPESLWSEVNHLL 334
+ ++K KI +CVDVHV R++ W KTP+ TR +L++WLP+ LW+E+N LL
Sbjct: 247 LTLQKAWGKIEGICVDVHVDRLTKLWKWVDAQKCKTPDQTRTQLQNWLPKGLWTEINGLL 306
Query: 335 VGFGQQICKSQR--------PSCE--TCLNKDLCPQGKKELAERVKKSPK 374
VGFGQ I KS+ P + + L+ DL Q KE+ + + PK
Sbjct: 307 VGFGQIITKSRNLGDMLQFLPPDDPRSSLDWDLQSQLYKEIQQNIMSYPK 356
Score = 81 (33.6 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 82 LLKKQNVHNK--DPI-PDENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHS-- 136
+++ NV N+ P+ P T + P ++E +R +R APVD +G
Sbjct: 65 VVRNGNVPNRWATPLDPSILVTPASTKVPYKFQETYARMRVLRSKILAPVDIIGGSSIPV 124
Query: 137 --------ANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAM 169
+ I+P R VL+ +MLSSQTKDEV AM
Sbjct: 125 TVASKCGISKEQISPRDYRLQVLLGVMLSSQTKDEVTAMAM 165
>ASPGD|ASPL0000064583 [details] [associations]
symbol:AN10978 species:162425 "Emericella nidulans"
[GO:0006285 "base-excision repair, AP site formation" evidence=IEA]
[GO:0034599 "cellular response to oxidative stress" evidence=IEA]
[GO:0090297 "positive regulation of mitochondrial DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0034043 "5-hydroxymethyluracil
DNA N-glycosylase activity" evidence=IEA] [GO:0034039
"8-oxo-7,8-dihydroguanine DNA N-glycosylase activity" evidence=IEA]
[GO:0034042 "5-formyluracil DNA N-glycosylase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR004036 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PROSITE:PS01155 SMART:SM00478
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:BN001304
GO:GO:0004519 HOGENOM:HOG000252209 EnsemblFungi:CADANIAT00000774
OMA:WHEINKL Uniprot:C8VC05
Length = 429
Score = 217 (81.4 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 54/134 (40%), Positives = 73/134 (54%)
Query: 124 GDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENIC 183
G AP + +H+ ++ + E I + KD V A + L +ENI
Sbjct: 211 GGAPAIKLETEHAESI-VKQEAENGEPAIK----QEAKDGVPPANPSH--DSTLNLENIL 263
Query: 184 NTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLC 243
S + L LI VGF K K+IK A++I++ YN+DIP+T L KLPGVGPKMA+LC
Sbjct: 264 AVSPERLNSLIGTVGFHNNKTKYIKKAAEIIRDQYNSDIPSTPAELMKLPGVGPKMAYLC 323
Query: 244 MNHAWGIVTGIGKD 257
M+ AWG GIG D
Sbjct: 324 MSAAWGKHEGIGVD 337
Score = 163 (62.4 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 277 ICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVG 336
+C+ K + VDVHVHRI++ GW K KTPE+TR LESWLP+ W E+N L G
Sbjct: 322 LCMSAAWGKHEGIGVDVHVHRITNLWGWHKT-KTPEETRMSLESWLPKDKWHEINKLRCG 380
Query: 337 ----FGQQICKSQ 345
G ++CKS+
Sbjct: 381 DCGLAGTKLCKSE 393
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 41/116 (35%), Positives = 58/116 (50%)
Query: 63 KTQNKKNTLYKSEKLGKRTLLKKQNVHNKDP-IP----DENDTKKTKWEPAHWKEVLNNI 117
KT + +K+ K L+KK+N K +P D T P++W + + +
Sbjct: 91 KTTSNSTRRTPEKKVEK--LVKKENSQPKARRVPARKVKNEDGSFTVEAPSNWDAIYSIV 148
Query: 118 REMRKHGD-APVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRL 172
++MR+ APVD MG +P RR+ LI+LMLSSQTKD V AM RL
Sbjct: 149 KKMREDNPTAPVDTMGCAELYWRASSPRDRRFQTLIALMLSSQTKDTVTAVAMQRL 204
>UNIPROTKB|J9P6R3 [details] [associations]
symbol:NTHL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] InterPro:IPR011257
GO:GO:0003824 Gene3D:1.10.340.30 SUPFAM:SSF48150 GO:GO:0006281
GeneTree:ENSGT00510000047513 EMBL:AAEX03004629
Ensembl:ENSCAFT00000049243 Uniprot:J9P6R3
Length = 240
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 61/134 (45%), Positives = 83/134 (61%)
Query: 73 KSEKLGKRTL-LKKQNVHNKDPIPDENDTKKTK----WEPAHWKEVLNNIREMRKHGDAP 127
K+ L KR +K V + P ++ ++ K WEP W++ L NIR MR DAP
Sbjct: 34 KNPSLAKRQRKTQKLKVAYEAPGHEKGESHKALEALGWEPQDWRQQLENIRTMRSGKDAP 93
Query: 128 VDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSE 187
VD +G +H + P+V+RY VL+SLMLSSQTKD+V AM RL+ HGLT+++I T +
Sbjct: 94 VDWLGVEHCHDPSAPPKVQRYQVLLSLMLSSQTKDQVTAGAMQRLRAHGLTVDSILQTDD 153
Query: 188 DVLGKLIIPVGFWK 201
LG LI PVGFW+
Sbjct: 154 ATLGSLIYPVGFWR 167
>TIGR_CMR|GSU_1450 [details] [associations]
symbol:GSU_1450 "endonuclease III, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR005759
InterPro:IPR011257 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0004519 GO:GO:0016798 KO:K10773
HOGENOM:HOG000252209 RefSeq:NP_952501.2 GeneID:2687781
KEGG:gsu:GSU1450 PATRIC:22025743 ProtClustDB:CLSK2306769
BioCyc:GSUL243231:GH27-1429-MONOMER Uniprot:Q74D69
Length = 218
Score = 162 (62.1 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 32/72 (44%), Positives = 38/72 (52%)
Query: 287 PQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQR 346
P +CVD HVHRI +R G+ + KTPE T L LP W +N LV FGQ C
Sbjct: 139 PGICVDTHVHRICNRWGYIRT-KTPEQTEFSLRRILPHRYWLVINDYLVTFGQNHCTPVS 197
Query: 347 PSCETCLNKDLC 358
P C TC+ C
Sbjct: 198 PRCSTCVLAQWC 209
Score = 136 (52.9 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 34/102 (33%), Positives = 54/102 (52%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ VL+S +LS +T+D A RL T + S+D + K I PVGF+ TKA+ I
Sbjct: 36 FKVLVSCILSLRTQDRTTGPASERLFALADTPAAMVRLSKDDIEKAIYPVGFYHTKAEQI 95
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
+L + Y+ +P+ ++ L GVG K A+L + +G
Sbjct: 96 LEICRVLLERYDGGVPDELDELLAFKGVGRKTANLVITLGFG 137
>TIGR_CMR|BA_1570 [details] [associations]
symbol:BA_1570 "endonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0000703 "oxidized pyrimidine nucleobase
lesion DNA N-glycosylase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004036
InterPro:IPR005759 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
Pfam:PF10576 PIRSF:PIRSF001435 PROSITE:PS01155 SMART:SM00278
SMART:SM00478 SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0051539 GO:GO:0005622 GO:GO:0004519 GO:GO:0003906 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 HOGENOM:HOG000252208 HSSP:P20625
RefSeq:NP_844020.1 RefSeq:YP_018193.1 RefSeq:YP_027725.1
ProteinModelPortal:Q81SS5 SMR:Q81SS5 DNASU:1083694
EnsemblBacteria:EBBACT00000010838 EnsemblBacteria:EBBACT00000014468
EnsemblBacteria:EBBACT00000019730 GeneID:1083694 GeneID:2815568
GeneID:2851771 KEGG:ban:BA_1570 KEGG:bar:GBAA_1570 KEGG:bat:BAS1456
ProtClustDB:CLSK2521133 BioCyc:BANT260799:GJAJ-1530-MONOMER
BioCyc:BANT261594:GJ7F-1594-MONOMER Uniprot:Q81SS5
Length = 215
Score = 157 (60.3 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 286 IPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQ 345
IP + VD HV R+S RL + + + K L +P WS +H ++ FG+ CK+Q
Sbjct: 133 IPAIAVDTHVERVSKRLAICRWKDSVLEVEKTLMKKIPMDEWSVTHHRMIFFGRYHCKAQ 192
Query: 346 RPSCETCLNKDLCPQGKKEL 365
RP CE C ++C +GKK +
Sbjct: 193 RPQCEECPLLEVCREGKKRM 212
Score = 133 (51.9 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 32/103 (31%), Positives = 60/103 (58%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ ++I++ LS+Q D + + L + T E+ + S + L + I +G ++ KAK+I
Sbjct: 31 FELVIAVALSAQCTDALVNKVTKNLFQKYKTPEDYLSVSLEELQQDIRSIGLYRNKAKNI 90
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGI 250
+ +L +YN ++P + L KLPGVG K A++ ++ A+GI
Sbjct: 91 QKLCRMLLDDYNGEVPKDRDELTKLPGVGRKTANVVVSVAFGI 133
>TIGR_CMR|CJE_0698 [details] [associations]
symbol:CJE_0698 "endonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR003265 InterPro:IPR003651
InterPro:IPR004035 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00730 PIRSF:PIRSF001435 PROSITE:PS00764 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0051539 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0004519 GO:GO:0003906
eggNOG:COG0177 HOGENOM:HOG000252206 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 PIR:B81407 RefSeq:YP_178710.1
ProteinModelPortal:Q5HVH5 STRING:Q5HVH5 GeneID:3231980
KEGG:cjr:CJE0698 PATRIC:20043124 ProtClustDB:CLSK872385
BioCyc:CJEJ195099:GJC0-715-MONOMER Uniprot:Q5HVH5
Length = 208
Score = 151 (58.2 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 289 LCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPS 348
+ VD HV R+SHRLG +K KTPE T ++L ++L + ++ +V FG+ CK+++P
Sbjct: 133 MAVDTHVFRVSHRLGLSKA-KTPEATEEDLTRTFKDNL-NYLHQAMVLFGRYTCKAKKPL 190
Query: 349 CETCLNKDLCPQGKKEL 365
C+ C LC KEL
Sbjct: 191 CKECFLNHLCKSKDKEL 207
Score = 105 (42.0 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 148 YHVLISLMLSSQTKDE-VNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKH 206
Y +L+ +MLS+Q D+ VN K + I+++ N + L I F+ KA++
Sbjct: 28 YELLVCVMLSAQCTDKRVNLITPDLFKAYP-DIKSLANANLSSLKTYIQTCSFFNNKAQN 86
Query: 207 -IKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCM 244
IKMA + + N++ +IP + L L GVG K AH+ +
Sbjct: 87 LIKMAKAVCE-NFDGEIPLDEQNLKSLAGVGQKTAHVVL 124
>TIGR_CMR|SPO_3581 [details] [associations]
symbol:SPO_3581 "endonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR005759
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 Pfam:PF10576
PIRSF:PIRSF001435 SMART:SM00278 SMART:SM00478 SMART:SM00525
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 HOGENOM:HOG000252206 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 RefSeq:YP_168776.1
ProteinModelPortal:Q5LMI2 SMR:Q5LMI2 GeneID:3196325
KEGG:sil:SPO3581 PATRIC:23380639 ProtClustDB:CLSK934216
Uniprot:Q5LMI2
Length = 214
Score = 132 (51.5 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 33/106 (31%), Positives = 57/106 (53%)
Query: 145 VRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKA 204
V Y +++++ LS+Q D + A L + T E + E+ + + I +G ++ KA
Sbjct: 31 VNAYTLVVAVALSAQATDAGVNKATRELFKIADTPEKMLALGEEGVTEHIKTIGLFRQKA 90
Query: 205 KHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGI 250
K++ S IL + Y ++PN+ L LPGVG K A++ +N W I
Sbjct: 91 KNVIKLSRILVEQYGGEVPNSRAALQSLPGVGRKTANVVLNMWWRI 136
Score = 125 (49.1 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 285 KIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKS 344
+IP VD H+ R+ +R G K + + +E +P +H L+ G+ CK+
Sbjct: 135 RIPAQAVDTHIFRVGNRTGICPG-KDVDTVERAIEDNIPADFQQHAHHWLILHGRYHCKA 193
Query: 345 QRPSCETCLNKDLCPQGKKEL 365
++P C TCL +DLC K L
Sbjct: 194 RKPMCGTCLIRDLCQFEDKTL 214
>TIGR_CMR|ECH_0857 [details] [associations]
symbol:ECH_0857 "endonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR005759
InterPro:IPR011257 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 SMART:SM00278 SMART:SM00478 SMART:SM00525
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0051539 GO:GO:0005622 GO:GO:0004519
GO:GO:0003906 eggNOG:COG0177 HOGENOM:HOG000252206 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 RefSeq:YP_507652.1
ProteinModelPortal:Q2GFY1 SMR:Q2GFY1 STRING:Q2GFY1 GeneID:3928070
KEGG:ech:ECH_0857 PATRIC:20577124 ProtClustDB:CLSK749547
BioCyc:ECHA205920:GJNR-860-MONOMER Uniprot:Q2GFY1
Length = 210
Score = 135 (52.6 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 286 IPQLCVDVHVHRISHRLGWTK---VFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQIC 342
+P + VD HV R+S+R+G K V KT ED L + +P+ +H LV G+ +C
Sbjct: 132 LPTVAVDTHVFRVSNRIGLVKESNVLKT-EDA---LLNVIPKKWLLYAHHWLVLHGRYVC 187
Query: 343 KSQRPSCETCLNKDLCPQGKKEL 365
KS++P C C+ +DLC K L
Sbjct: 188 KSRKPLCSQCVVQDLCEYESKSL 210
Score = 118 (46.6 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 30/101 (29%), Positives = 54/101 (53%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS++T D + +L E T + + E L I +G + +K+K+I
Sbjct: 30 FTLLIAIVLSARTTDVSVNKITDKLFEVADTPRKMLDLGEKGLKNYINTIGLYNSKSKNI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAW 248
S I+ +N+++P L LPGVG K A++ +N W
Sbjct: 90 IALSGIIINQHNSNVPLDFNTLVALPGVGRKSANVFLN-TW 129
>TIGR_CMR|DET_0935 [details] [associations]
symbol:DET_0935 "endonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR004036
InterPro:IPR005759 InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730
PIRSF:PIRSF001435 PROSITE:PS00764 PROSITE:PS01155 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0004519
GO:GO:0003906 eggNOG:COG0177 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HOGENOM:HOG000252208 RefSeq:YP_181660.1
ProteinModelPortal:Q3Z7Y9 STRING:Q3Z7Y9 GeneID:3229754
KEGG:det:DET0935 PATRIC:21608917 ProtClustDB:CLSK837188
BioCyc:DETH243164:GJNF-936-MONOMER Uniprot:Q3Z7Y9
Length = 218
Score = 128 (50.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 289 LCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPS 348
+ VD HV R++ RLG + P ++L + +P S W ++ L+ G+ +C +++P
Sbjct: 140 IAVDTHVKRLAGRLGLS-TNTDPVKIEQDLMALIPRSEWGNFSYYLIDHGRAVCDAKKPR 198
Query: 349 CETCLNKDLCP 359
C C+ D+CP
Sbjct: 199 CPECVLNDICP 209
Score = 122 (48.0 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 31/111 (27%), Positives = 61/111 (54%)
Query: 148 YHVLISLMLSSQTKDE-VNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKH 206
+ +L++ +LS+Q+ D+ +N K++ ++ + S L + I GF+ KA +
Sbjct: 34 FEMLVATILSAQSTDKMINKITPALFKKYP-GVQAFADASLAELEQDIKSSGFFHNKALN 92
Query: 207 IKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
I A+ + + D+P + + LPGVG K A++ +++A+G+V GI D
Sbjct: 93 IIGAARAVVSRFGGDVPRNMADMLTLPGVGRKTANVVLHNAFGLVEGIAVD 143
>TIGR_CMR|NSE_0246 [details] [associations]
symbol:NSE_0246 "endonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR003651 InterPro:IPR004036 InterPro:IPR005759
InterPro:IPR011257 Pfam:PF00730 PIRSF:PIRSF001435 PROSITE:PS01155
SMART:SM00278 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0177 HOGENOM:HOG000252206 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 RefSeq:YP_506140.1 ProteinModelPortal:Q2GEF6
STRING:Q2GEF6 GeneID:3931594 KEGG:nse:NSE_0246 PATRIC:22680583
ProtClustDB:CLSK2528191 BioCyc:NSEN222891:GHFU-276-MONOMER
Uniprot:Q2GEF6
Length = 216
Score = 132 (51.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 30/93 (32%), Positives = 52/93 (55%)
Query: 266 PSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPES 325
P + S + ++C EK+I VD HV R+S+R+G E ++ LE+ +P++
Sbjct: 121 PGIGRKSANVILCTLFGEKRI---AVDTHVFRVSNRIGLVHARNVLEVEKQLLEN-IPKT 176
Query: 326 LWSEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ + LV G+ ICK+++P C+ C+ DLC
Sbjct: 177 FLPQAHLWLVLHGRYICKARKPECKNCIINDLC 209
Score = 102 (41.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 145 VRRYHVLISLMLSSQTKD-EVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTK 203
V ++ ++I+++LS+Q+ D VN A + E+ L + I +G K
Sbjct: 33 VNKFTLIIAVLLSAQSTDVSVNKATKALFRV-AYEPEHYAKMDLAKLKESIKTIGLHNNK 91
Query: 204 AKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
AK+I + L + DIPN + L LPG+G K A++ + +G
Sbjct: 92 AKNIIALAKKLISDKQTDIPNNFQYLQSLPGIGRKSANVILCTLFG 137
>UNIPROTKB|P63540 [details] [associations]
symbol:nth "Endonuclease III" species:1773 "Mycobacterium
tuberculosis" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA] [GO:0019104 "DNA N-glycosylase activity"
evidence=IDA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0005886 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 EMBL:BX842583 GO:GO:0006281
GO:GO:0051539 GO:GO:0005622 GO:GO:0003690 GO:GO:0004519
GO:GO:0003906 eggNOG:COG0177 GO:GO:0019104 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 PIR:C70790 RefSeq:NP_218191.2 RefSeq:NP_338328.1
RefSeq:YP_006517162.1 ProteinModelPortal:P63540 SMR:P63540
PRIDE:P63540 EnsemblBacteria:EBMYCT00000000148
EnsemblBacteria:EBMYCT00000071122 GeneID:13317283 GeneID:885058
GeneID:926474 KEGG:mtc:MT3775 KEGG:mtu:Rv3674c KEGG:mtv:RVBD_3674c
PATRIC:18130064 TubercuList:Rv3674c HOGENOM:HOG000252208
ProtClustDB:CLSK799395 Uniprot:P63540
Length = 245
Score = 120 (47.3 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 152 ISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMAS 211
++ +LS+Q+ D+ + L T + L LI P GF++ KA +
Sbjct: 45 VATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLG 104
Query: 212 DILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
L + + ++P T++ L LPGVG K A++ + +A+GI GI D
Sbjct: 105 QALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGI-PGITVD 149
Score = 114 (45.2 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 286 IPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQ 345
IP + VD H R+ R WT + P + + + W+ ++H ++ G+++C ++
Sbjct: 143 IPGITVDTHFGRLVRRWRWTTA-EDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHAR 201
Query: 346 RPSCETC-LNKDLCP 359
RP+C C L KD CP
Sbjct: 202 RPACGVCVLAKD-CP 215
>UNIPROTKB|Q97QE0 [details] [associations]
symbol:nth "Endonuclease III" species:170187 "Streptococcus
pneumoniae TIGR4" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PIRSF:PIRSF001435 PROSITE:PS01155
SMART:SM00278 SMART:SM00478 GO:GO:0006284 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 GO:GO:0005622 EMBL:AE005672 GenomeReviews:AE005672_GR
GO:GO:0004519 GO:GO:0003906 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HOGENOM:HOG000252208 HSSP:P20625 PIR:D98016
PIR:F95148 RefSeq:NP_345743.1 ProteinModelPortal:Q97QE0
EnsemblBacteria:EBSTRT00000027009 GeneID:931793 KEGG:spn:SP_1279
PATRIC:19706957 ProtClustDB:CLSK884066 Uniprot:Q97QE0
Length = 209
Score = 122 (48.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 148 YHVLISLMLSSQTKDE-VNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKH 206
+ +L+++MLS+QT D VN A G T + + +E + I +G ++ KAK
Sbjct: 32 FELLVAVMLSAQTTDAAVNKATPGLFVAFP-TPQAMSVATESEIASHISRLGLYRNKAKF 90
Query: 207 IKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGI 250
+K + L +++ +P T E L L GVG K A++ M+ +GI
Sbjct: 91 LKKCAQQLLDDFDGQVPQTREELESLAGVGRKTANVVMSVGFGI 134
Score = 104 (41.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 286 IPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQ 345
IP VD HV RI K TP + K + LP W + ++ FG+ IC +
Sbjct: 134 IPAFAVDTHVERICKHHDIVKKSATPLEVEKRVMDILPPEQWLAAHQAMIYFGRAICHPK 193
Query: 346 RPSCE 350
P C+
Sbjct: 194 NPECD 198
>TIGR_CMR|CHY_1121 [details] [associations]
symbol:CHY_1121 "endonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR003651
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PIRSF:PIRSF001435 PROSITE:PS01155
SMART:SM00278 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0005622 GO:GO:0004519
GO:GO:0003906 eggNOG:COG0177 HOGENOM:HOG000252206 KO:K10773
OMA:NNKSKHL TIGRFAMs:TIGR01083 RefSeq:YP_359967.1
ProteinModelPortal:Q3AD17 STRING:Q3AD17 GeneID:3726382
KEGG:chy:CHY_1121 PATRIC:21275382
BioCyc:CHYD246194:GJCN-1120-MONOMER Uniprot:Q3AD17
Length = 210
Score = 164 (62.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 287 PQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQR 346
P VD HV R++ RLG +K +TPE +L+ P + W +++H L+ FG++ICK+Q+
Sbjct: 133 PSFPVDTHVFRVARRLGLSKA-RTPEGVSFDLKKIFPPNSWIDLHHRLIFFGRRICKAQK 191
Query: 347 PSCETCLNKDLCPQGKKEL 365
PSC C + C + + ++
Sbjct: 192 PSCNICPFPEFCQKEESDV 210
Score = 136 (52.9 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 42/159 (26%), Positives = 80/159 (50%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L++++LS+Q+ D + +L ++ + E+ L + I +G ++ KA+++
Sbjct: 30 FQLLVAVVLSAQSTDRQVNKVTEKLFLFVKEPRDLLDMGEEELSRQIRSLGLYRNKARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
++IL + Y+ +P++ L KLPGVGPK A ++ G+G ++ P+ +
Sbjct: 90 IKIAEILDREYHGQVPDSFAELLKLPGVGPKTAE--------VIVGVGFNKPSFPVDTHV 141
Query: 268 SRQISRSELICVRKCE------KKI--PQLCVDVHVHRI 298
R R L R E KKI P +D+H HR+
Sbjct: 142 FRVARRLGLSKARTPEGVSFDLKKIFPPNSWIDLH-HRL 179
>UNIPROTKB|P0AB83 [details] [associations]
symbol:nth "endonuclease III; specific for apurinic and/or
apyrimidinic sites" species:83333 "Escherichia coli K-12"
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016798 "hydrolase activity, acting on glycosyl bonds"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 GO:GO:0016798 eggNOG:COG0177
EMBL:J02857 PIR:A32412 RefSeq:NP_416150.1 RefSeq:YP_489897.1
PDB:2ABK PDBsum:2ABK ProteinModelPortal:P0AB83 SMR:P0AB83
DIP:DIP-48071N IntAct:P0AB83 MINT:MINT-1223379
EnsemblBacteria:EBESCT00000001176 EnsemblBacteria:EBESCT00000001177
EnsemblBacteria:EBESCT00000015357 GeneID:12933192 GeneID:947122
KEGG:ecj:Y75_p1610 KEGG:eco:b1633 PATRIC:32118568 EchoBASE:EB0656
EcoGene:EG10662 HOGENOM:HOG000252206 KO:K10773 OMA:NNKSKHL
ProtClustDB:PRK10702 BioCyc:EcoCyc:EG10662-MONOMER
BioCyc:ECOL316407:JW1625-MONOMER EvolutionaryTrace:P0AB83
Genevestigator:P0AB83 TIGRFAMs:TIGR01083 Uniprot:P0AB83
Length = 211
Score = 111 (44.1 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS+Q D + A +L T + + + I +G + +KA++I
Sbjct: 30 FELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWG 249
IL + +N ++P L LPGVG K A++ +N A+G
Sbjct: 90 IKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFG 131
Score = 105 (42.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 287 PQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQR 346
P + VD H+ R+ +R + K E ++L +P + +H L+ G+ C +++
Sbjct: 133 PTIAVDTHIFRVCNRTQFAPG-KNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARK 191
Query: 347 PSCETCLNKDLCPQGKK 363
P C +C+ +DLC +K
Sbjct: 192 PRCGSCIIEDLCEYKEK 208
>TIGR_CMR|CBU_1697 [details] [associations]
symbol:CBU_1697 "endonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0004519
GO:GO:0003906 HOGENOM:HOG000252206 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HSSP:P20625 RefSeq:NP_820678.1
ProteinModelPortal:Q83B22 SMR:Q83B22 PRIDE:Q83B22 GeneID:1209608
KEGG:cbu:CBU_1697 PATRIC:17932131 ProtClustDB:CLSK914967
BioCyc:CBUR227377:GJ7S-1668-MONOMER Uniprot:Q83B22
Length = 218
Score = 154 (59.3 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 49/155 (31%), Positives = 75/155 (48%)
Query: 148 YHVLISLMLSSQTKD-EVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKH 206
+ +LIS+MLS+Q D VN A L T + E L K I +G + TKAK+
Sbjct: 30 FELLISVMLSAQATDISVNKATKD-LYRIANTPAKVLALGESGLKKYIKSIGLYNTKAKN 88
Query: 207 IKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSP 266
I IL +NY++ +P T E L LPGVG K A++ +N A+G I D + +
Sbjct: 89 IIKTCKILVENYHSKVPRTREELEALPGVGRKTANVILNTAFG-EHAIAVDTHIFRVANR 147
Query: 267 SSRQISRSELICVRKCEKKIPQ-LCVDVHVHRISH 300
+ ++ L +K + +P+ D H + H
Sbjct: 148 TGLARGKTPLAVEKKLMEVVPKKYLADAHHWLVLH 182
Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 289 LCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPS 348
+ VD H+ R+++R G + KTP K+L +P+ ++ +H LV G+ IC ++RP
Sbjct: 135 IAVDTHIFRVANRTGLARG-KTPLAVEKKLMEVVPKKYLADAHHWLVLHGRYICIARRPK 193
Query: 349 CETCLNKDLC 358
C CL DLC
Sbjct: 194 CSECLINDLC 203
>TIGR_CMR|APH_0897 [details] [associations]
symbol:APH_0897 "endonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR005759
InterPro:IPR011257 Pfam:PF00633 Pfam:PF00730 PIRSF:PIRSF001435
SMART:SM00278 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0004519 GO:GO:0003906
eggNOG:COG0177 HOGENOM:HOG000252206 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 ProtClustDB:CLSK749547 RefSeq:YP_505472.1
ProteinModelPortal:Q2GJH9 SMR:Q2GJH9 STRING:Q2GJH9 GeneID:3930592
KEGG:aph:APH_0897 PATRIC:20950500
BioCyc:APHA212042:GHPM-910-MONOMER Uniprot:Q2GJH9
Length = 209
Score = 142 (55.0 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 40/144 (27%), Positives = 74/144 (51%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L++++LS++T D + +L + + + + E L + I +G + +KAK+I
Sbjct: 28 FTLLVAIVLSARTTDVSVNKITAKLFDVANSAKKMLALGESGLKRYINSIGLYNSKAKNI 87
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
S+I++ Y IP + L LPGVG K A++ +N G+ T I D + S
Sbjct: 88 IQLSEIIENTYGGTIPRDFDALTALPGVGRKSANVFLNSCLGVPT-IAVDTH---VFRVS 143
Query: 268 SR--QISRSELICVRKC-EKKIPQ 288
+R + S ++ V K EK +P+
Sbjct: 144 NRIGLVQESSVLGVEKSLEKVVPE 167
Score = 128 (50.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 286 IPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQ 345
+P + VD HV R+S+R+G + + K LE +PE +H LV G+ +CK++
Sbjct: 130 VPTIAVDTHVFRVSNRIGLVQE-SSVLGVEKSLEKVVPEKWKLYAHHWLVLHGRYVCKAR 188
Query: 346 RPSCETCLNKDLC 358
P C C+ DLC
Sbjct: 189 TPLCGKCIVSDLC 201
>TIGR_CMR|SO_2514 [details] [associations]
symbol:SO_2514 "endonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 GO:GO:0051539
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004519
GO:GO:0003906 HOGENOM:HOG000252206 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HSSP:P20625 RefSeq:NP_718101.1
ProteinModelPortal:Q8EE75 SMR:Q8EE75 GeneID:1170225
KEGG:son:SO_2514 PATRIC:23524657 Uniprot:Q8EE75
Length = 231
Score = 134 (52.2 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 43/154 (27%), Positives = 75/154 (48%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +L+++ LS+Q D + A +L T +I + L + I +G + KA ++
Sbjct: 30 FELLVAVTLSAQATDVSVNKATDKLFPVANTAHSIYALGVEGLKEYIKTIGLYNNKAVNV 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
A +IL + YN ++P E L LPGVG K A++ +N A+G T I D + + +
Sbjct: 90 IKACEILIEKYNGEVPEDREALESLPGVGRKTANVVLNTAFGWPT-IAVDTHIFRLANRT 148
Query: 268 SRQISRSELICVRKCEKKIP-QLCVDVHVHRISH 300
++ + + K +P + VDVH I H
Sbjct: 149 KFAPGKNVVEVEERMLKVVPAEFKVDVHHWFILH 182
Score = 37 (18.1 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 38 QQTRCQLEKNIALNNPLDDKEHN 60
QQ R Q+ + NNP E N
Sbjct: 3 QQKRIQILTRLRENNPKPQTELN 25
>TIGR_CMR|BA_0522 [details] [associations]
symbol:BA_0522 "A/G-specific adenine glycosylase"
species:198094 "Bacillus anthracis str. Ames" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003651 InterPro:IPR004035 InterPro:IPR005760
InterPro:IPR011257 InterPro:IPR015797 Pfam:PF00633 Pfam:PF00730
PROSITE:PS00764 SMART:SM00478 SMART:SM00525 GO:GO:0006284
Gene3D:1.10.340.30 SUPFAM:SSF48150 Gene3D:1.10.1670.10
InterPro:IPR023170 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:3.90.79.10
SUPFAM:SSF55811 GO:GO:0051539 GO:GO:0005622 GO:GO:0004519
GO:GO:0019104 KO:K03575 HOGENOM:HOG000028743 TIGRFAMs:TIGR01084
HSSP:P17802 OMA:QAVKPYF RefSeq:NP_843058.1 RefSeq:YP_017141.1
RefSeq:YP_026771.1 ProteinModelPortal:Q81YV8 SMR:Q81YV8
DNASU:1087779 EnsemblBacteria:EBBACT00000010013
EnsemblBacteria:EBBACT00000017545 EnsemblBacteria:EBBACT00000019690
GeneID:1087779 GeneID:2817839 GeneID:2853132 KEGG:ban:BA_0522
KEGG:bar:GBAA_0522 KEGG:bat:BAS0491 ProtClustDB:CLSK886914
BioCyc:BANT260799:GJAJ-534-MONOMER
BioCyc:BANT261594:GJ7F-559-MONOMER Uniprot:Q81YV8
Length = 365
Score = 101 (40.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 33/141 (23%), Positives = 65/141 (46%)
Query: 112 EVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRR--YHVLISLMLSSQTKDEVNHAAM 169
E+LNN + D +GW D+ + Y V +S ++ QT+ E
Sbjct: 4 EILNNFNIEQFQNDL----IGWFEKEQRDLPWRKNKDPYRVWVSEIMLQQTRVEAVKPYY 59
Query: 170 GRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELL 229
T+E + N ++ + K +G++ ++A+++ A +K+ Y +P+ ++ +
Sbjct: 60 ANFMGKFPTLEALANADDEEVLKAWEGLGYY-SRARNLHAAVKEVKEVYGGIVPSDVKKI 118
Query: 230 CKLPGVGPKMAHLCMNHAWGI 250
KL GVGP ++ A+GI
Sbjct: 119 EKLKGVGPYTKGAILSIAYGI 139
Score = 79 (32.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 33/100 (33%), Positives = 50/100 (50%)
Query: 286 IPQLCVDVHVHRISHRL--GWTKVFKTPEDTRKELESWLPESLWSE----VNHLLVGFGQ 339
IP+ VD +V R+ R+ W + K P+ TRK E + E + +E N L+ G
Sbjct: 139 IPEPAVDGNVVRVLSRILSVWDDIAK-PK-TRKVFEEIVREIISAENPSYFNQGLMELGA 196
Query: 340 QICKSQRPSCETCLNKDLCPQGKKELAERVKKS-PKKRKS 378
IC + P+C C ++ C +G AE V+K P K K+
Sbjct: 197 LICIPKNPACLLCPVREHC-RG---YAEGVQKELPVKSKA 232
>UNIPROTKB|Q9KT92 [details] [associations]
symbol:VC_1011 "Endonuclease III" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HSSP:P20625 PIR:A82252 RefSeq:NP_230657.1
ProteinModelPortal:Q9KT92 SMR:Q9KT92 DNASU:2614264 GeneID:2614264
KEGG:vch:VC1011 PATRIC:20081122 ProtClustDB:CLSK874181
Uniprot:Q9KT92
Length = 213
Score = 130 (50.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 48/196 (24%), Positives = 91/196 (46%)
Query: 117 IREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHG 176
+ +R H P + W+ +P + +LI+++LS+Q D + A +L
Sbjct: 10 LERLRAHNPKPETELNWN-------SP----FELLIAVLLSAQATDVSVNKATDKLYAVA 58
Query: 177 LTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVG 236
T + + + D + + I +G + +KA+++ IL + + ++P E L LPGVG
Sbjct: 59 NTPQTMLDLGVDGVKEYIKTIGLFNSKAENVIKTCRILLEKHQGEVPEDREALEALPGVG 118
Query: 237 PKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIP-QLCVDVHV 295
K A++ +N A+G T I D + + + + ++ K K +P + +DVH
Sbjct: 119 RKTANVVLNTAFGWPT-IAVDTHIFRVSNRTKFAVGKNVDEVEHKLLKVVPNEFKLDVHH 177
Query: 296 HRISHRLGWTKVFKTP 311
I H +T V + P
Sbjct: 178 WLILHGR-YTCVARKP 192
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 287 PQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQR 346
P + VD H+ R+S+R + V K ++ +L +P +V+H L+ G+ C +++
Sbjct: 133 PTIAVDTHIFRVSNRTKFA-VGKNVDEVEHKLLKVVPNEFKLDVHHWLILHGRYTCVARK 191
Query: 347 PSCETCLNKDLC 358
P C +C+ +DLC
Sbjct: 192 PRCGSCIIEDLC 203
>TIGR_CMR|VC_1011 [details] [associations]
symbol:VC_1011 "endonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] InterPro:IPR000445 InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR003651 InterPro:IPR004035
InterPro:IPR004036 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 Pfam:PF10576 PIRSF:PIRSF001435
PROSITE:PS00764 PROSITE:PS01155 SMART:SM00278 SMART:SM00478
SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0051539 GO:GO:0005622
GO:GO:0004519 GO:GO:0003906 KO:K10773 OMA:NNKSKHL
TIGRFAMs:TIGR01083 HSSP:P20625 PIR:A82252 RefSeq:NP_230657.1
ProteinModelPortal:Q9KT92 SMR:Q9KT92 DNASU:2614264 GeneID:2614264
KEGG:vch:VC1011 PATRIC:20081122 ProtClustDB:CLSK874181
Uniprot:Q9KT92
Length = 213
Score = 130 (50.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 48/196 (24%), Positives = 91/196 (46%)
Query: 117 IREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHG 176
+ +R H P + W+ +P + +LI+++LS+Q D + A +L
Sbjct: 10 LERLRAHNPKPETELNWN-------SP----FELLIAVLLSAQATDVSVNKATDKLYAVA 58
Query: 177 LTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVG 236
T + + + D + + I +G + +KA+++ IL + + ++P E L LPGVG
Sbjct: 59 NTPQTMLDLGVDGVKEYIKTIGLFNSKAENVIKTCRILLEKHQGEVPEDREALEALPGVG 118
Query: 237 PKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIP-QLCVDVHV 295
K A++ +N A+G T I D + + + + ++ K K +P + +DVH
Sbjct: 119 RKTANVVLNTAFGWPT-IAVDTHIFRVSNRTKFAVGKNVDEVEHKLLKVVPNEFKLDVHH 177
Query: 296 HRISHRLGWTKVFKTP 311
I H +T V + P
Sbjct: 178 WLILHGR-YTCVARKP 192
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 287 PQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQR 346
P + VD H+ R+S+R + V K ++ +L +P +V+H L+ G+ C +++
Sbjct: 133 PTIAVDTHIFRVSNRTKFA-VGKNVDEVEHKLLKVVPNEFKLDVHHWLILHGRYTCVARK 191
Query: 347 PSCETCLNKDLC 358
P C +C+ +DLC
Sbjct: 192 PRCGSCIIEDLC 203
>DICTYBASE|DDB_G0270764 [details] [associations]
symbol:myh "monofunctional DNA glycosylase"
species:44689 "Dictyostelium discoideum" [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR003265 InterPro:IPR003651 InterPro:IPR011257
InterPro:IPR015797 Pfam:PF00730 SMART:SM00478 SMART:SM00525
dictyBase:DDB_G0270764 GO:GO:0005634 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006284 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
Gene3D:3.90.79.10 SUPFAM:SSF55811 GO:GO:0051539 GO:GO:0006298
GO:GO:0004519 KO:K03575 eggNOG:COG1194 RefSeq:XP_001134477.1
ProteinModelPortal:Q1ZXP7 STRING:Q1ZXP7 EnsemblProtists:DDB0232996
GeneID:8617615 KEGG:ddi:DDB_G0270764 InParanoid:Q1ZXP7 OMA:RSIGANP
ProtClustDB:CLSZ2847450 Uniprot:Q1ZXP7
Length = 574
Score = 116 (45.9 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 45/196 (22%), Positives = 86/196 (43%)
Query: 51 NNPLDDKEHNDNKTQNKKNTLYKSEKLGKRTLLKKQNVHNKDPIPDENDTK----KTKWE 106
N+ D E T K N+ K T K ++ KD + + K K
Sbjct: 29 NSDEDYVERKKKPTTKKTNSKVKKNNTTTTTTTTKTSIKVKDESIESIELKPCQHSLKLH 88
Query: 107 PAHWKEVLNNIRE-MRKHGDAPVDAMGW-DHSANVDIAPEVRRYHVLISLMLSSQTKDEV 164
K+ + IRE M + + W H ++D V Y V +S ++ QT+
Sbjct: 89 KFKNKQEIQEIRESMLGWYEKNKRDLPWRKHDNSLD--ENVIAYRVWVSEIMLQQTRVAT 146
Query: 165 NHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPN 224
+ E TI ++ +T+ + + K+ +G+++ +AK++ + S + N+N+ IP+
Sbjct: 147 VIEYFNKWIEKWPTINDLASTTIEEVNKVWSGLGYYR-RAKNLWLGSKYVVDNFNSKIPS 205
Query: 225 TIELLCKLPGVGPKMA 240
++ L ++ G+GP A
Sbjct: 206 DVKSLLEINGIGPYTA 221
Score = 65 (27.9 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 317 ELESWLPESLWS--EVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPK 374
EL + L ES+ + N L+ G IC Q P C+ C + C Q ++ + +K PK
Sbjct: 265 ELGNDLVESVENPCNFNQSLMELGATICSVQSPQCKQCPIQSNC-QAYQQEKQFIKPEPK 323
>UNIPROTKB|Q3Z642 [details] [associations]
symbol:DET1612 "DNA repair protein, HhH-GPD family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003265
InterPro:IPR003583 InterPro:IPR005759 InterPro:IPR011257
Pfam:PF00730 PIRSF:PIRSF001435 SMART:SM00278 SMART:SM00478
GO:GO:0003824 GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:CP000027
GenomeReviews:CP000027_GR RefSeq:YP_182307.1
ProteinModelPortal:Q3Z642 STRING:Q3Z642 GeneID:3229065
KEGG:det:DET1612 PATRIC:21610236 eggNOG:COG2231
HOGENOM:HOG000252207 KO:K07457 OMA:YNEYHAL ProtClustDB:CLSK836787
BioCyc:DETH243164:GJNF-1613-MONOMER Uniprot:Q3Z642
Length = 220
Score = 89 (36.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGL-TIENICNTSEDVLGKLIIPVGFWK 201
P R+ ++ +L+ A+ RLKE GL + E I T ED L + I P G++
Sbjct: 28 PAESRFEMMTGAVLTQSAAWTNVEKAIARLKEAGLLSPEAIMKTDEDTLAEAIRPSGYFN 87
Query: 202 TKAKHIKMASDILKKNYN 219
K + +K + L YN
Sbjct: 88 VKTRKLKALAAWLVAGYN 105
Score = 67 (28.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/104 (23%), Positives = 48/104 (46%)
Query: 257 DESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRK 316
D RQ +L ++ I + C K P +D + RI RLG + + ++
Sbjct: 117 DALRQELLGVWGIGEETADSILLYACGK--PVFVIDAYTRRIFSRLGLAERDAGYDRLQR 174
Query: 317 ELESWLPE--SLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ L ++++E + L+V ++ C+ +P C+ C+ K +C
Sbjct: 175 LFTANLAADAAVFNEYHALVVRHAKEHCRV-KPVCQGCVLKTIC 217
>TIGR_CMR|DET_1612 [details] [associations]
symbol:DET_1612 "DNA repair protein, HhH-GPD family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003674
"molecular_function" evidence=ND] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR003265 InterPro:IPR003583
InterPro:IPR005759 InterPro:IPR011257 Pfam:PF00730
PIRSF:PIRSF001435 SMART:SM00278 SMART:SM00478 GO:GO:0003824
GO:GO:0006284 Gene3D:1.10.340.30 SUPFAM:SSF48150
Gene3D:1.10.1670.10 InterPro:IPR023170 GO:GO:0003677 EMBL:CP000027
GenomeReviews:CP000027_GR RefSeq:YP_182307.1
ProteinModelPortal:Q3Z642 STRING:Q3Z642 GeneID:3229065
KEGG:det:DET1612 PATRIC:21610236 eggNOG:COG2231
HOGENOM:HOG000252207 KO:K07457 OMA:YNEYHAL ProtClustDB:CLSK836787
BioCyc:DETH243164:GJNF-1613-MONOMER Uniprot:Q3Z642
Length = 220
Score = 89 (36.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGL-TIENICNTSEDVLGKLIIPVGFWK 201
P R+ ++ +L+ A+ RLKE GL + E I T ED L + I P G++
Sbjct: 28 PAESRFEMMTGAVLTQSAAWTNVEKAIARLKEAGLLSPEAIMKTDEDTLAEAIRPSGYFN 87
Query: 202 TKAKHIKMASDILKKNYN 219
K + +K + L YN
Sbjct: 88 VKTRKLKALAAWLVAGYN 105
Score = 67 (28.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/104 (23%), Positives = 48/104 (46%)
Query: 257 DESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRK 316
D RQ +L ++ I + C K P +D + RI RLG + + ++
Sbjct: 117 DALRQELLGVWGIGEETADSILLYACGK--PVFVIDAYTRRIFSRLGLAERDAGYDRLQR 174
Query: 317 ELESWLPE--SLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLC 358
+ L ++++E + L+V ++ C+ +P C+ C+ K +C
Sbjct: 175 LFTANLAADAAVFNEYHALVVRHAKEHCRV-KPVCQGCVLKTIC 217
>TIGR_CMR|CJE_1792 [details] [associations]
symbol:CJE_1792 "A/G-specific adenine glycosylase"
species:195099 "Campylobacter jejuni RM1221" [GO:0004844 "uracil
DNA N-glycosylase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000445
InterPro:IPR003265 InterPro:IPR003583 InterPro:IPR003651
InterPro:IPR004036 InterPro:IPR005760 InterPro:IPR011257
Pfam:PF00633 Pfam:PF00730 PROSITE:PS01155 SMART:SM00278
SMART:SM00478 SMART:SM00525 GO:GO:0006284 Gene3D:1.10.340.30
SUPFAM:SSF48150 Gene3D:1.10.1670.10 InterPro:IPR023170
GO:GO:0003677 GO:GO:0051539 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004519 GO:GO:0019104 KO:K03575
eggNOG:COG1194 HOGENOM:HOG000028743 TIGRFAMs:TIGR01084
RefSeq:YP_179763.1 ProteinModelPortal:Q5HSH2 STRING:Q5HSH2
GeneID:3232419 KEGG:cjr:CJE1792 PATRIC:20045396 OMA:WQGAGYY
ProtClustDB:CLSK879335 BioCyc:CJEJ195099:GJC0-1822-MONOMER
Uniprot:Q5HSH2
Length = 339
Score = 88 (36.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 29/93 (31%), Positives = 50/93 (53%)
Query: 146 RRYHVLIS-LMLS-SQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTK 203
R Y V IS +ML +Q K + L++ T+E++ N +ED L K +G++ T+
Sbjct: 44 RAYGVYISEIMLQQTQVKSVLERFYFPFLQKFP-TLESLANANEDELLKAWQGLGYY-TR 101
Query: 204 AKHIKMASDILKKNYNNDIPNTIELLCKLPGVG 236
A+++K A+ + +P +E L KL G+G
Sbjct: 102 ARNLKKAALECVDKFEAKLPKEVEDLKKLSGIG 134
Score = 74 (31.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 30/89 (33%), Positives = 38/89 (42%)
Query: 291 VDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHL------LVGFGQQICKS 344
VD ++ R+ RL F + KELE E L +NH L+ G +C S
Sbjct: 153 VDGNIRRVLSRL-----FALENPSMKELEKRAKELL--NLNHAFDHNQALLDIGALVCVS 205
Query: 345 QRPSCETCLNKDLCPQGK--KELAERVKK 371
+ C C D C QGK EL R KK
Sbjct: 206 KNAKCGICPLYDFC-QGKFHTELYPRAKK 233
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 378 378 0.00089 117 3 11 22 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 620 (66 KB)
Total size of DFA: 283 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:03
No. of threads or processors used: 24
Search cpu time: 39.24u 0.09s 39.33t Elapsed: 00:00:25
Total cpu time: 39.25u 0.09s 39.34t Elapsed: 00:00:28
Start: Thu Aug 15 13:31:15 2013 End: Thu Aug 15 13:31:43 2013