RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4002
(378 letters)
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 214
Score = 92.3 bits (228), Expect = 2e-22
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 36/218 (16%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS+Q D + + RL E T + + L + I +G ++ KA++I
Sbjct: 31 FELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 90
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
+ +L YN ++P + L KLPGVG K A++ ++ A+
Sbjct: 91 QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAF------------------- 131
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
+P + VD HV R+S RLG+ + + + K L +P+ W
Sbjct: 132 -----------------GVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEW 174
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKEL 365
S +H ++ FG+ CK+Q P C +C LC +GKK +
Sbjct: 175 SITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRM 212
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
{Helicobacter pylori [TaxId: 210]}
Length = 217
Score = 91.0 bits (225), Expect = 5e-22
Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 65/230 (28%)
Query: 143 PEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHG-------LTIENICNTSEDVLGKLII 195
P ++ L+ +L+ TK E ++ LK + ++ I L + +
Sbjct: 25 PNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVR 84
Query: 196 PVGFWKTKAKHIKMASDILKKNYN----NDIPNTIELLCKLPGVGPKMAHLCMNHAWGIV 251
P GF+ KAK + S + K++ T E L G+G + A + +A
Sbjct: 85 PSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKE 144
Query: 252 TGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTP 311
+ VD + + +LG +
Sbjct: 145 VMV------------------------------------VDKYSYLFLKKLGIEI--EDY 166
Query: 312 EDTRKELESWLPES----------------LWSEVNHLLVGFGQQICKSQ 345
++ + E + E+ L++ + +V F +Q + +
Sbjct: 167 DELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELK 216
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 211
Score = 76.5 bits (187), Expect = 7e-17
Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 37/216 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+++LS+Q D + A +L T + + + I +G + +KA++I
Sbjct: 30 FELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENI 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
IL + +N ++P L LPGVG K A++ +N A+
Sbjct: 90 IKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAF------------------- 130
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
P + VD H+ R+ +R + ++L +P
Sbjct: 131 -----------------GWPTIAVDTHIFRVCNRTQFAPGKNVE-QVEEKLLKVVPAEFK 172
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKK 363
+ +H L+ G+ C +++P C +C+ +DLC +K
Sbjct: 173 VDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEK 208
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon
Methanobacterium thermoformicicum [TaxId: 145262]}
Length = 217
Score = 75.8 bits (185), Expect = 1e-16
Identities = 41/219 (18%), Positives = 73/219 (33%), Gaps = 39/219 (17%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y +LI+ +L +T + E+I T + + K I +G +A+ +
Sbjct: 34 YVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQL 93
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
K + ++ +Y +P + + LPGVG M A+G
Sbjct: 94 KELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGK----------------- 136
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKE---LESWLPE 324
VD + R+ +R + + E+ +P
Sbjct: 137 -------------------KAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPG 177
Query: 325 SLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKK 363
+ N L+ F IC ++P CE C LC +K
Sbjct: 178 GKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEK 216
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 71.6 bits (174), Expect = 5e-15
Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 43/230 (18%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ R T+ ++ N D + L +G++ +A+++
Sbjct: 31 YKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNL 89
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
A+ + + P T E + LPGVG A ++ + G I
Sbjct: 90 HKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI------------- 136
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWL----P 323
+D +V R+ R + ++ +L S P
Sbjct: 137 -----------------------LDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTP 173
Query: 324 ESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAER--VKK 371
N ++ G IC +P C C ++ C KK
Sbjct: 174 AVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKK 223
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 221
Score = 70.0 bits (170), Expect = 1e-14
Identities = 41/225 (18%), Positives = 80/225 (35%), Gaps = 41/225 (18%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
Y V +S ++ QT+ E + + T+E + + ED + K +G++ +++
Sbjct: 29 YKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRV-RNL 87
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
A +K Y +P+ + +L GVGP ++ A+
Sbjct: 88 HAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAY------------------- 128
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRL----GWTKVFKTPEDTRKELESWLP 323
+P+ V+ +V R+ RL T + + + +
Sbjct: 129 -----------------GVPEPAVNGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMA 171
Query: 324 ESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAER 368
N L+ G +C +RPSC C + C + +AE
Sbjct: 172 YENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEE 216
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 66.4 bits (161), Expect = 2e-13
Identities = 24/219 (10%), Positives = 55/219 (25%), Gaps = 64/219 (29%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHG---------------LTIENICNTSEDVLGK 192
L S + SS + RL + +++ + +
Sbjct: 3 IECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEA--- 59
Query: 193 LIIPVGFWKTKAKHIKMASDI----------LKKNYNNDIPNTIELLCKLPGVGPKMAHL 242
+ +A+++ ++ L++ + + LC LPGVG ++A
Sbjct: 60 -HLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADC 118
Query: 243 CMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRL 302
A + VDVH+ I+ R
Sbjct: 119 ICLMALDKPQAV-----------------------------------PVDVHMWHIAQRD 143
Query: 303 GWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQI 341
+ + + + + G+ +
Sbjct: 144 YSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAAAV 182
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain
of the methyl-GpG binding protein mbd4 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 144
Score = 50.1 bits (119), Expect = 3e-08
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
+ +LI+ + ++T ++ + E + E + +L+ P+G + +AK I
Sbjct: 21 WKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTI 80
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMA 240
SD +L G+G
Sbjct: 81 IKFSDEYLTKQWRY-------PIELHGIGKYGN 106
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
radiodurans [TaxId: 1299]}
Length = 199
Score = 33.7 bits (77), Expect = 0.020
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 217 NYNNDIPNTIELLCKLPGVGPKMA-----HLCMNHAWGIVTGIGKDE--SRQPILSPSSR 269
Y + + I L +LPG+GPK A HL I R + P
Sbjct: 2 KYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICF 61
Query: 270 QISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKT 310
I+ +E V + + V L + ++
Sbjct: 62 NITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRG 102
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 30.1 bits (68), Expect = 0.086
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 203 KAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMA 240
K + A+ ++ K Y + I + KLPGVG K+A
Sbjct: 26 KYNAYRKAASVIAK-YPHKI-KSGAEAKKLPGVGTKIA 61
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 27.0 bits (60), Expect = 0.60
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 227 ELLCKLPGVGPKMAHLCMNH 246
+ L K+PGV K M+H
Sbjct: 3 DFLLKMPGVNAKNCRSLMHH 22
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 27.0 bits (60), Expect = 0.61
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 229 LCKLPGVGPKMAHLCMNHAWGIVTGI 254
L LPGVGP A + + I
Sbjct: 1 LTDLPGVGPSTAEKLVEAGYIDFMKI 26
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 27.0 bits (60), Expect = 0.65
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 225 TIELLCKLPGVGPKMAHLCMNH 246
++E L LPG+GP +A +
Sbjct: 15 SLEELMALPGIGPVLARRIVEG 36
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle
domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 27.1 bits (60), Expect = 0.93
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 224 NTIELLCKLPGVGPKMA 240
+ L KLPG+G K A
Sbjct: 41 EEVGALVKLPGIGKKTA 57
Score = 24.4 bits (53), Expect = 7.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 227 ELLCKLPGVGPKMAHLCMNH 246
+ L K GVGPK+A ++
Sbjct: 9 KELIKTNGVGPKLALAILSG 28
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 26.6 bits (59), Expect = 0.99
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 224 NTIELLCKLPGVGPKMAH 241
+ + L ++PG+G + A
Sbjct: 41 SDVASLTRVPGIGRRGAE 58
Score = 26.6 bits (59), Expect = 1.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 227 ELLCKLPGVGPKMAHLCMNH 246
L + GVGP++A +
Sbjct: 9 LALLSVSGVGPRLAMATLAV 28
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 26.5 bits (59), Expect = 1.0
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 221 DIPNTIELLCKLPGVGPKMA 240
D ++I L ++ G+GP A
Sbjct: 1 DTSSSINFLTRVSGIGPSAA 20
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone
decarboxylase, CMD {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 119
Score = 27.5 bits (61), Expect = 1.1
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 16/95 (16%)
Query: 212 DILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQI 271
+IL + + +L V P +A A+G V + +L +R++
Sbjct: 9 EILNRMNRKSYTAIRD---ELEDVAPDLARFVAEFAYGDV-------YSRGVLDLKTREL 58
Query: 272 SRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTK 306
+ V + + + HV R + G +K
Sbjct: 59 LTLAALTVLRADD-----QLKSHV-RGALNAGCSK 87
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 73
Score = 26.2 bits (58), Expect = 1.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 227 ELLCKLPGVGPKMAHLCMNH 246
ELL + GVGPK+A ++
Sbjct: 10 ELLLSVSGVGPKVALALLSA 29
Score = 26.2 bits (58), Expect = 1.8
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 224 NTIELLCKLPGVGPKMAH 241
LL GVG ++A
Sbjct: 42 GDARLLTSASGVGRRLAE 59
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,
IlvH {Thermotoga maritima [TaxId: 2336]}
Length = 78
Score = 26.5 bits (59), Expect = 1.7
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 15 VDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNI 48
V ++ R+ ++VK D+ +Q Q K +
Sbjct: 36 VGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLV 69
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 25.5 bits (56), Expect = 3.0
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 203 KAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMA 240
+A A + LK ++ + + + C +PG+G +MA
Sbjct: 24 RALGYAKAINALKS-FHKPV-TSYQEACSIPGIGKRMA 59
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 333
Score = 27.1 bits (59), Expect = 3.4
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 208 KMASDILKKNY-------NNDIPNTIELLC--KLPGVGPKMAHLCMNHAWGIVT 252
K+ SD K N + + I+ L K+ G+G + A GI+T
Sbjct: 247 KVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKML--KALGIIT 298
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 90
Score = 25.4 bits (56), Expect = 3.7
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 225 TIELLCKLPGVGPKMA 240
+ LL ++ G+ +A
Sbjct: 33 SAALLARISGLNSTLA 48
>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia
coli [TaxId: 562]}
Length = 564
Score = 27.3 bits (59), Expect = 4.2
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 295 VHRISHRLGWTKVFKTPEDTRKELESWLPE 324
+ I+ R+G+ + ++ EL P+
Sbjct: 482 ISEIATRMGYPMHYNNTQEIWDELRHLCPD 511
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 25.2 bits (55), Expect = 4.3
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 226 IELLCKLPGVGPKMAHLCMNH 246
+ +L PG+G + A +
Sbjct: 12 LYILQSFPGIGRRTAERILER 32
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 164
Score = 26.2 bits (58), Expect = 4.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 153 SLMLSSQTKDEVNHAAMGRLKEHGLTIENI 182
S +S + + A L+E G+T+E I
Sbjct: 1 SNAMSEFIMNNLEQTARRWLEERGVTVEKI 30
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 622
Score = 27.0 bits (58), Expect = 5.3
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 53 PLDDKEHNDNKTQNKKNTLYKSEKLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKE 112
P D ++ +++Y ++ + + ++ K D + + W E
Sbjct: 28 PWDKDPAPSHQLPGVLDSIYSPTRI--KYPMVRREFLEKGVNADRSTRGNGDFVRVTWDE 85
Query: 113 VLNNI 117
L+ +
Sbjct: 86 ALDLV 90
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
{Plasmodium vivax [TaxId: 5855]}
Length = 373
Score = 26.5 bits (57), Expect = 5.8
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 197 VGFWKTKAKHIKMASDILKKNYNNDIPNTIELL 229
+ F K + + K+ I KKN N I T
Sbjct: 4 LAF-KIERPYDKVLKTISKKNLKNYIKETFNFF 35
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
IlvH {Nitrosomonas europaea [TaxId: 915]}
Length = 77
Score = 24.6 bits (54), Expect = 5.9
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 3 RRSMKNKTLTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNI 48
R ++L+V T++ RM +V + +Q QL K I
Sbjct: 25 ARGYNIESLSV--APTEDPTLSRMTLVTNGPDEIVEQITKQLNKLI 68
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 143
Score = 25.8 bits (56), Expect = 6.7
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 172 LKEHGLTIENICNTSEDVLGK 192
K+ G+T+E + T ++ +
Sbjct: 109 YKKFGITVEEVVRTGRELAKR 129
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 24.8 bits (54), Expect = 6.8
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 225 TIELLCKLPGVGPKMA 240
+ L L +GPK A
Sbjct: 31 SARDLRSLQRIGPKKA 46
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 23.9 bits (52), Expect = 7.9
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 224 NTIELLCKLPGVGPKMA 240
+ +L + GVG K A
Sbjct: 5 KSFKLFTSVFGVGLKTA 21
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,
IlvH {Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.2 bits (53), Expect = 9.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 3 RRSMKNKTLTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNI 48
+R ++LTV T + RM + DE +Q QL K +
Sbjct: 24 QRGYNIESLTV--APTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLV 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.400
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,419,174
Number of extensions: 67226
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 45
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)