Query psy4003
Match_columns 535
No_of_seqs 259 out of 2101
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:55:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 1.4E-79 3.1E-84 618.7 40.9 393 2-534 236-631 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 1.9E-63 4E-68 558.3 47.9 396 2-535 205-603 (653)
3 KOG0101|consensus 100.0 2.6E-64 5.7E-69 543.2 35.9 396 2-535 208-603 (620)
4 PRK13411 molecular chaperone D 100.0 2.1E-62 4.5E-67 549.6 48.0 390 2-535 197-590 (653)
5 PTZ00186 heat shock 70 kDa pre 100.0 1.5E-61 3.4E-66 540.3 47.9 387 2-534 223-613 (657)
6 PRK13410 molecular chaperone D 100.0 1.1E-61 2.5E-66 543.2 46.5 389 2-534 198-595 (668)
7 PLN03184 chloroplast Hsp70; Pr 100.0 8.6E-61 1.9E-65 537.3 47.8 374 2-519 235-612 (673)
8 PTZ00400 DnaK-type molecular c 100.0 6.6E-61 1.4E-65 537.9 46.7 386 2-534 237-626 (663)
9 PRK00290 dnaK molecular chaper 100.0 2.2E-60 4.7E-65 532.4 49.1 386 2-534 196-585 (627)
10 TIGR02350 prok_dnaK chaperone 100.0 2.9E-60 6.3E-65 528.9 48.2 386 2-534 194-583 (595)
11 CHL00094 dnaK heat shock prote 100.0 5.3E-60 1.1E-64 528.3 47.9 386 2-534 198-587 (621)
12 TIGR01991 HscA Fe-S protein as 100.0 2.6E-58 5.6E-63 512.2 49.0 382 2-534 192-573 (599)
13 PRK05183 hscA chaperone protei 100.0 1.2E-57 2.6E-62 508.0 47.3 378 2-534 212-589 (616)
14 KOG0102|consensus 100.0 1.2E-57 2.7E-62 474.7 28.9 388 2-533 223-614 (640)
15 PRK01433 hscA chaperone protei 100.0 8.2E-55 1.8E-59 482.2 46.8 363 2-533 204-566 (595)
16 PF00012 HSP70: Hsp70 protein; 100.0 1.9E-54 4E-59 482.5 45.1 389 2-535 199-591 (602)
17 COG0443 DnaK Molecular chapero 100.0 1.6E-53 3.4E-58 469.9 38.5 385 1-534 182-566 (579)
18 KOG0103|consensus 100.0 6.5E-51 1.4E-55 435.5 37.3 389 2-535 207-637 (727)
19 KOG0104|consensus 100.0 1E-41 2.2E-46 365.7 29.2 374 15-535 248-726 (902)
20 PRK11678 putative chaperone; P 99.9 1.3E-22 2.8E-27 218.6 20.0 170 2-245 220-447 (450)
21 PRK13928 rod shape-determining 99.7 4.2E-17 9.2E-22 170.1 17.4 160 2-246 158-324 (336)
22 PRK13927 rod shape-determining 99.7 1.6E-15 3.5E-20 157.9 17.2 159 2-245 159-324 (334)
23 PRK13929 rod-share determining 99.6 1.4E-14 3E-19 151.2 16.8 157 2-243 161-324 (335)
24 TIGR00904 mreB cell shape dete 99.6 1.8E-14 3.8E-19 150.2 17.0 158 2-245 161-327 (333)
25 PRK13930 rod shape-determining 99.6 3.2E-14 7E-19 148.0 16.6 159 2-245 163-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 99.3 3.6E-12 7.8E-17 131.9 10.8 158 2-243 156-319 (326)
27 TIGR02529 EutJ ethanolamine ut 99.3 1.5E-11 3.2E-16 122.6 10.3 120 2-241 119-238 (239)
28 PRK15080 ethanolamine utilizat 99.3 2.5E-11 5.4E-16 122.9 12.1 122 2-243 146-267 (267)
29 TIGR01174 ftsA cell division p 99.2 8.8E-11 1.9E-15 124.3 11.1 145 2-242 207-371 (371)
30 PRK09472 ftsA cell division pr 99.0 6.4E-09 1.4E-13 112.0 13.7 155 2-244 215-387 (420)
31 COG1077 MreB Actin-like ATPase 98.9 1.2E-08 2.6E-13 103.4 12.2 161 2-247 164-333 (342)
32 COG0849 ftsA Cell division ATP 97.9 9.1E-05 2E-09 79.3 11.9 151 5-245 205-380 (418)
33 PRK13917 plasmid segregation p 97.4 0.0015 3.4E-08 68.7 12.4 49 196-248 291-339 (344)
34 PF11104 PilM_2: Type IV pilus 96.7 0.013 2.9E-07 61.4 11.6 46 196-242 274-338 (340)
35 TIGR00241 CoA_E_activ CoA-subs 96.6 0.013 2.7E-07 58.8 9.8 44 197-241 203-247 (248)
36 cd00012 ACTIN Actin; An ubiqui 96.5 0.0065 1.4E-07 64.3 7.5 50 196-245 289-347 (371)
37 KOG0100|consensus 96.4 0.0031 6.8E-08 66.0 3.9 74 96-196 337-415 (663)
38 PF02782 FGGY_C: FGGY family o 96.2 0.014 3.1E-07 55.7 7.4 48 196-245 149-196 (198)
39 TIGR03192 benz_CoA_bzdQ benzoy 96.1 0.021 4.6E-07 58.5 8.5 47 198-245 241-288 (293)
40 smart00268 ACTIN Actin. ACTIN 95.8 0.0096 2.1E-07 63.0 4.5 48 197-244 292-346 (373)
41 TIGR02261 benz_CoA_red_D benzo 95.7 0.036 7.8E-07 56.0 8.0 45 199-243 214-262 (262)
42 PRK15027 xylulokinase; Provisi 95.6 0.043 9.2E-07 60.4 8.6 52 196-248 386-437 (484)
43 TIGR01175 pilM type IV pilus a 95.5 0.12 2.6E-06 54.0 11.6 26 196-221 282-307 (348)
44 TIGR02259 benz_CoA_red_A benzo 95.1 0.062 1.3E-06 57.1 7.6 46 198-243 383-432 (432)
45 TIGR03286 methan_mark_15 putat 95.1 0.051 1.1E-06 58.0 7.0 46 198-244 357-402 (404)
46 COG0443 DnaK Molecular chapero 95.0 0.015 3.3E-07 65.4 3.0 100 95-221 283-392 (579)
47 TIGR03739 PRTRC_D PRTRC system 94.9 0.34 7.5E-06 50.4 12.4 46 196-243 273-318 (320)
48 PLN02669 xylulokinase 94.8 0.077 1.7E-06 59.5 7.8 71 168-245 422-492 (556)
49 TIGR01315 5C_CHO_kinase FGGY-f 94.7 0.088 1.9E-06 58.8 7.9 51 196-248 443-493 (541)
50 PF00022 Actin: Actin; InterP 94.2 0.16 3.4E-06 54.1 8.3 48 197-244 311-366 (393)
51 TIGR02628 fuculo_kin_coli L-fu 94.2 0.18 4E-06 55.1 9.0 51 196-248 393-443 (465)
52 TIGR01312 XylB D-xylulose kina 94.2 0.2 4.3E-06 54.8 9.3 51 196-248 390-440 (481)
53 TIGR01234 L-ribulokinase L-rib 94.1 0.17 3.7E-06 56.5 8.6 59 185-248 427-486 (536)
54 PTZ00280 Actin-related protein 94.1 0.21 4.5E-06 53.9 8.9 25 197-221 313-337 (414)
55 PRK00047 glpK glycerol kinase; 94.0 0.15 3.2E-06 56.4 7.9 51 196-248 403-453 (498)
56 PRK04123 ribulokinase; Provisi 94.0 0.17 3.6E-06 56.7 8.3 59 185-248 430-489 (548)
57 COG1924 Activator of 2-hydroxy 94.0 0.19 4E-06 52.9 7.9 44 200-244 346-389 (396)
58 TIGR01311 glycerol_kin glycero 93.9 0.18 3.9E-06 55.6 8.2 51 196-248 399-449 (493)
59 PTZ00294 glycerol kinase-like 93.9 0.17 3.7E-06 56.0 8.1 51 196-248 406-456 (504)
60 PTZ00186 heat shock 70 kDa pre 93.5 0.031 6.7E-07 63.8 1.3 47 95-150 327-374 (657)
61 TIGR01314 gntK_FGGY gluconate 93.5 0.22 4.7E-06 55.1 7.9 51 196-248 401-451 (505)
62 PRK10331 L-fuculokinase; Provi 93.4 0.27 5.9E-06 53.9 8.5 51 196-248 389-439 (470)
63 PLN02295 glycerol kinase 93.3 0.24 5.3E-06 54.9 8.0 51 196-248 412-462 (512)
64 PRK13317 pantothenate kinase; 93.1 0.28 6E-06 50.2 7.4 49 196-244 222-273 (277)
65 TIGR02627 rhamnulo_kin rhamnul 92.9 0.37 8E-06 52.6 8.6 50 196-248 387-436 (454)
66 PRK10640 rhaB rhamnulokinase; 92.6 0.43 9.4E-06 52.4 8.7 50 196-248 375-424 (471)
67 KOG2531|consensus 92.5 0.38 8.3E-06 51.6 7.6 60 184-245 430-489 (545)
68 PRK10939 autoinducer-2 (AI-2) 92.2 0.41 8.9E-06 53.2 7.9 51 196-248 409-459 (520)
69 PRK13410 molecular chaperone D 92.1 0.06 1.3E-06 61.7 1.1 19 132-150 331-349 (668)
70 KOG0102|consensus 92.0 0.035 7.5E-07 60.5 -0.8 54 132-204 356-413 (640)
71 KOG2517|consensus 91.8 0.52 1.1E-05 51.9 7.9 74 170-248 391-464 (516)
72 KOG0101|consensus 91.6 0.11 2.5E-06 58.0 2.6 19 132-150 337-355 (620)
73 PLN03184 chloroplast Hsp70; Pr 91.1 0.1 2.2E-06 59.9 1.7 46 471-516 590-635 (673)
74 CHL00094 dnaK heat shock prote 90.7 0.11 2.4E-06 59.0 1.5 19 132-150 331-349 (621)
75 TIGR02350 prok_dnaK chaperone 90.7 0.12 2.6E-06 58.4 1.8 19 132-150 327-345 (595)
76 COG1070 XylB Sugar (pentulose 90.6 1.2 2.7E-05 49.3 9.5 51 196-248 401-451 (502)
77 PRK01433 hscA chaperone protei 90.5 0.25 5.5E-06 55.9 4.1 19 132-150 311-329 (595)
78 KOG0681|consensus 90.5 0.35 7.5E-06 52.9 4.8 136 99-245 461-614 (645)
79 PTZ00281 actin; Provisional 90.2 0.75 1.6E-05 49.0 7.2 48 197-244 295-349 (376)
80 PRK00290 dnaK molecular chaper 90.2 0.13 2.8E-06 58.5 1.5 19 132-150 329-347 (627)
81 PTZ00466 actin-like protein; P 89.6 1.8 3.8E-05 46.3 9.5 48 197-244 299-353 (380)
82 PTZ00004 actin-2; Provisional 88.8 1.2 2.5E-05 47.5 7.3 48 197-244 297-351 (378)
83 COG1069 AraB Ribulose kinase [ 88.2 4.1 8.8E-05 45.0 11.0 51 196-248 431-481 (544)
84 PTZ00452 actin; Provisional 87.7 2.7 5.9E-05 44.8 9.3 48 197-244 294-348 (375)
85 PRK05183 hscA chaperone protei 86.5 0.3 6.5E-06 55.5 1.2 19 132-150 331-349 (616)
86 KOG0104|consensus 85.7 0.66 1.4E-05 52.6 3.3 45 156-203 324-368 (902)
87 PF07520 SrfB: Virulence facto 83.5 5.8 0.00013 47.0 9.8 52 196-247 766-836 (1002)
88 PLN02377 3-ketoacyl-CoA syntha 82.9 5.6 0.00012 44.1 9.0 106 92-221 110-219 (502)
89 PRK11678 putative chaperone; P 82.6 0.6 1.3E-05 51.0 1.4 19 132-150 402-420 (450)
90 PLN03173 chalcone synthase; Pr 81.6 13 0.00029 39.9 11.1 109 94-221 29-149 (391)
91 COG5277 Actin and related prot 81.3 5.3 0.00012 43.6 8.1 49 196-244 362-417 (444)
92 PF06406 StbA: StbA protein; 79.6 5.6 0.00012 41.3 7.4 63 172-240 252-316 (318)
93 PF01869 BcrAD_BadFG: BadF/Bad 79.5 6.6 0.00014 39.5 7.6 44 200-243 224-271 (271)
94 PLN03168 chalcone synthase; Pr 79.4 14 0.00031 39.6 10.5 109 94-221 28-148 (389)
95 PLN03172 chalcone synthase fam 78.5 18 0.00039 38.9 11.0 109 94-221 29-149 (393)
96 PLN03170 chalcone synthase; Pr 78.4 16 0.00036 39.3 10.6 112 94-221 33-153 (401)
97 PRK13928 rod shape-determining 78.3 2.5 5.5E-05 44.1 4.3 50 99-150 246-296 (336)
98 PF08392 FAE1_CUT1_RppA: FAE1/ 77.0 12 0.00026 38.5 8.5 106 92-221 21-130 (290)
99 PLN02192 3-ketoacyl-CoA syntha 76.0 11 0.00023 42.0 8.4 105 92-221 114-223 (511)
100 PLN02854 3-ketoacyl-CoA syntha 75.9 11 0.00023 42.1 8.5 106 92-221 126-235 (521)
101 PTZ00009 heat shock 70 kDa pro 72.7 2.8 6.2E-05 48.0 3.1 34 158-191 294-327 (653)
102 COG0533 QRI7 Metal-dependent p 72.0 1.1E+02 0.0023 32.4 14.1 39 177-220 247-285 (342)
103 PTZ00400 DnaK-type molecular c 71.4 3.2 6.8E-05 47.8 3.1 34 158-191 329-362 (663)
104 PRK13927 rod shape-determining 71.1 5 0.00011 41.7 4.3 19 132-150 279-297 (334)
105 PRK09472 ftsA cell division pr 71.1 4.3 9.4E-05 43.9 3.9 64 95-159 295-362 (420)
106 PF06406 StbA: StbA protein; 71.0 7.5 0.00016 40.4 5.6 47 100-150 247-295 (318)
107 KOG0103|consensus 71.0 3.8 8.2E-05 46.4 3.4 44 157-203 294-337 (727)
108 PRK13411 molecular chaperone D 70.4 3.4 7.5E-05 47.4 3.1 34 158-191 289-322 (653)
109 COG0554 GlpK Glycerol kinase [ 70.3 16 0.00036 39.9 7.9 68 176-248 385-452 (499)
110 PRK00976 hypothetical protein; 70.2 22 0.00047 37.3 8.6 50 196-248 263-314 (326)
111 PF08841 DDR: Diol dehydratase 68.2 9.6 0.00021 39.0 5.3 61 183-243 260-329 (332)
112 KOG2708|consensus 66.8 59 0.0013 32.5 10.2 68 173-245 236-304 (336)
113 TIGR01991 HscA Fe-S protein as 64.4 5.3 0.00011 45.4 3.1 34 158-191 274-307 (599)
114 PRK13929 rod-share determining 62.9 7.8 0.00017 40.5 3.8 19 132-150 281-299 (335)
115 PRK13930 rod shape-determining 62.9 3.5 7.6E-05 42.8 1.2 19 132-150 283-301 (335)
116 TIGR00904 mreB cell shape dete 62.7 3.7 8E-05 42.8 1.3 19 132-150 282-300 (333)
117 COG4820 EutJ Ethanolamine util 62.2 15 0.00033 35.8 5.2 45 196-241 226-270 (277)
118 TIGR00555 panK_eukar pantothen 61.1 20 0.00043 36.8 6.2 71 169-241 204-278 (279)
119 PF03702 UPF0075: Uncharacteri 59.3 26 0.00057 37.3 7.0 47 196-244 284-336 (364)
120 PLN00415 3-ketoacyl-CoA syntha 58.2 81 0.0018 34.8 10.6 105 92-221 72-181 (466)
121 PLN02932 3-ketoacyl-CoA syntha 58.1 68 0.0015 35.5 10.1 106 92-221 80-195 (478)
122 TIGR02529 EutJ ethanolamine ut 57.8 5 0.00011 40.0 1.2 19 132-150 197-215 (239)
123 PF07318 DUF1464: Protein of u 56.7 32 0.0007 36.2 6.9 54 195-248 259-318 (343)
124 PRK15080 ethanolamine utilizat 56.5 5.6 0.00012 40.3 1.3 19 132-150 224-242 (267)
125 COG4457 SrfB Uncharacterized p 53.1 54 0.0012 37.4 8.2 53 196-248 778-849 (1014)
126 PF00012 HSP70: Hsp70 protein; 52.6 9.9 0.00021 42.7 2.7 34 158-191 290-323 (602)
127 TIGR03281 methan_mark_12 putat 52.5 80 0.0017 32.9 8.8 50 196-248 262-314 (326)
128 TIGR01174 ftsA cell division p 52.0 12 0.00026 39.5 3.1 26 132-157 317-346 (371)
129 TIGR00143 hypF [NiFe] hydrogen 50.6 35 0.00075 39.7 6.6 49 196-244 658-711 (711)
130 COG4972 PilM Tfp pilus assembl 50.6 97 0.0021 32.6 9.1 50 186-239 279-328 (354)
131 COG3426 Butyrate kinase [Energ 45.2 53 0.0012 33.8 6.1 65 177-241 277-344 (358)
132 PF02543 CmcH_NodU: Carbamoylt 44.6 1.4E+02 0.0031 31.6 9.7 52 197-248 163-216 (360)
133 COG4296 Uncharacterized protei 43.6 47 0.001 30.2 4.9 22 510-531 90-112 (156)
134 PRK03011 butyrate kinase; Prov 43.2 29 0.00064 36.8 4.3 49 194-242 293-344 (358)
135 KOG0797|consensus 41.7 11 0.00024 41.4 0.8 74 174-248 505-592 (618)
136 PF02782 FGGY_C: FGGY family o 39.4 49 0.0011 31.1 4.9 45 103-150 122-170 (198)
137 PRK09557 fructokinase; Reviewe 38.6 85 0.0018 31.9 6.8 48 196-243 244-299 (301)
138 PRK13310 N-acetyl-D-glucosamin 37.9 95 0.0021 31.6 7.0 48 196-243 245-300 (303)
139 PF02801 Ketoacyl-synt_C: Beta 37.3 25 0.00055 30.7 2.3 43 181-223 29-73 (119)
140 PRK05082 N-acetylmannosamine k 36.7 1E+02 0.0022 31.2 7.0 49 196-244 233-287 (291)
141 PRK09585 anmK anhydro-N-acetyl 35.6 1.6E+02 0.0034 31.5 8.2 48 196-244 286-337 (365)
142 PTZ00340 O-sialoglycoprotein e 33.8 1.1E+02 0.0023 32.5 6.6 47 170-221 238-288 (345)
143 KOG0680|consensus 31.5 22 0.00048 37.1 1.0 25 196-220 317-341 (400)
144 PRK09604 UGMP family protein; 31.2 1.9E+02 0.0041 30.3 8.0 53 196-248 254-311 (332)
145 TIGR03723 bact_gcp putative gl 29.4 1.6E+02 0.0035 30.6 7.0 47 196-242 259-310 (314)
146 cd00327 cond_enzymes Condensin 29.0 1.5E+02 0.0032 28.9 6.5 43 180-222 12-56 (254)
147 PF15290 Syntaphilin: Golgi-lo 28.5 59 0.0013 33.2 3.4 41 444-487 61-103 (305)
148 PF00195 Chal_sti_synt_N: Chal 28.5 1.2E+02 0.0027 30.1 5.7 128 95-242 28-170 (226)
149 TIGR00744 ROK_glcA_fam ROK fam 28.2 1.6E+02 0.0035 30.0 6.9 49 196-244 251-309 (318)
150 PLN03171 chalcone synthase-lik 28.1 1.3E+02 0.0028 32.4 6.3 109 94-221 35-155 (399)
151 PLN03169 chalcone synthase fam 27.9 1.4E+02 0.003 32.0 6.5 56 166-221 97-153 (391)
152 PRK09605 bifunctional UGMP fam 27.5 1.6E+02 0.0036 32.7 7.2 53 196-248 245-302 (535)
153 PF05957 DUF883: Bacterial pro 27.2 3.7E+02 0.008 22.4 8.7 67 449-519 5-73 (94)
154 PF06723 MreB_Mbl: MreB/Mbl pr 26.0 90 0.002 32.7 4.5 19 132-150 276-294 (326)
155 KOG2707|consensus 26.0 6.7E+02 0.015 26.8 10.6 59 182-240 291-350 (405)
156 PF11104 PilM_2: Type IV pilus 25.6 1.1E+02 0.0025 31.8 5.2 114 5-159 182-308 (340)
157 KOG1794|consensus 24.4 2.3E+02 0.005 29.4 6.8 48 197-248 264-319 (336)
158 PF14574 DUF4445: Domain of un 23.6 1.3E+02 0.0028 32.7 5.2 57 187-243 318-375 (412)
159 PRK09698 D-allose kinase; Prov 22.8 2.2E+02 0.0047 28.9 6.6 49 196-244 236-295 (302)
160 cd00825 decarbox_cond_enzymes 21.7 2.9E+02 0.0062 28.1 7.3 25 178-202 14-42 (332)
161 PRK06840 hypothetical protein; 21.2 1.4E+02 0.0031 30.8 4.9 45 177-221 55-102 (339)
162 TIGR03150 fabF beta-ketoacyl-a 20.9 1.4E+02 0.0031 31.6 4.9 44 179-222 277-322 (407)
163 PLN00078 photosystem I reactio 20.5 3.3E+02 0.0072 23.7 5.9 11 508-518 111-121 (122)
164 COG0796 MurI Glutamate racemas 20.5 3.4E+02 0.0074 27.8 7.2 108 127-241 109-218 (269)
165 PRK07515 3-oxoacyl-(acyl carri 20.4 79 0.0017 33.4 2.8 44 175-220 269-312 (372)
166 COG0332 FabH 3-oxoacyl-[acyl-c 20.0 1.6E+02 0.0034 31.0 4.8 66 177-245 54-121 (323)
No 1
>KOG0100|consensus
Probab=100.00 E-value=1.4e-79 Score=618.70 Aligned_cols=393 Identities=57% Similarity=0.933 Sum_probs=380.3
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||||++.++.| .|+|++++||++|||+|||.++++||++-|+++++.++..+.+++++|+++||+||++||....+.+
T Consensus 236 TFDVSlLtIdnG-VFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~ri 314 (663)
T KOG0100|consen 236 TFDVSLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRI 314 (663)
T ss_pred eEEEEEEEEcCc-eEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEE
Confidence 899999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.|+++++|.|++-++||..||++..++|+++..+++.+|+++++..+
T Consensus 315 EIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKs--------------------------------- 361 (663)
T KOG0100|consen 315 EIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKS--------------------------------- 361 (663)
T ss_pred eeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccc---------------------------------
Confidence 99999999999999999988888888888888888888777777666
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
|||.++|||||+|||.||++|+++|+|+++.+.+|||||||+|||.
T Consensus 362 ----------------------------------dideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAV 407 (663)
T KOG0100|consen 362 ----------------------------------DIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAV 407 (663)
T ss_pred ----------------------------------cCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCcc
Q psy4003 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAI 321 (535)
Q Consensus 242 ~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
+|..++| .+...++++.|++|.++||++.+|+|++||++|+.+|.++++.|++.
T Consensus 408 QaGvlsG--ee~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa------------------------ 461 (663)
T KOG0100|consen 408 QAGVLSG--EEDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTA------------------------ 461 (663)
T ss_pred hhccccc--ccCcCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeec------------------------
Confidence 9999999 67778999999999999999999999999999999999999999998
Q ss_pred CCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCC
Q psy4003 322 GGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 401 (535)
Q Consensus 322 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~ 401 (535)
.|+|+.++|+||+|++.++.+|+++|+|.++|+|
T Consensus 462 ----------------------------------------------~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGip 495 (663)
T KOG0100|consen 462 ----------------------------------------------QDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIP 495 (663)
T ss_pred ----------------------------------------------ccCCceEEEEEeeccccccccccccccccccCCC
Confidence 8999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHH
Q psy4003 402 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 481 (535)
Q Consensus 402 ~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~ 481 (535)
|+|+|.|+|+|+|.+|.||+|+|++.+..+|+..+++|+|+..+||.|+|++|.+.+++|..+|+..+++.++||+||+|
T Consensus 496 PAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~Y 575 (663)
T KOG0100|consen 496 PAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESY 575 (663)
T ss_pred CCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 482 AFAVKQAAEDSG---SKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 482 Iy~~r~~Le~~~---~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
.|.+++.+.+.+ ..+++++++.+..++++..+||++|.+|++++|.++.++|+
T Consensus 576 ayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele 631 (663)
T KOG0100|consen 576 AYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELE 631 (663)
T ss_pred HHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 999999998775 88999999999999999999999999999999999999986
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.9e-63 Score=558.34 Aligned_cols=396 Identities=67% Similarity=1.026 Sum_probs=371.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcc-cchhhhHHHHHHHHHHHHHHHHHhccCCcee
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK-KDILANTRAVRRLRTACERAKRTLSSSTEAS 80 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~ 80 (535)
||||||+++.++ .++|+++.|+.+|||+|||.+|++|+.++|..+++ .++..+++++.+|+.+||+||+.||.+.++.
T Consensus 205 T~dvsv~~~~~~-~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~ 283 (653)
T PTZ00009 205 TFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQAT 283 (653)
T ss_pred eEEEEEEEEeCC-eEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 899999999999 99999999999999999999999999999987763 5666788999999999999999999999999
Q ss_pred EEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccch
Q psy4003 81 LEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFY 160 (535)
Q Consensus 81 i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~ 160 (535)
+.++.++++.++.++|||++|+++|.++++++..+++++|+++++.+.
T Consensus 284 i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~-------------------------------- 331 (653)
T PTZ00009 284 IEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKR-------------------------------- 331 (653)
T ss_pred EEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--------------------------------
Confidence 999988889999999999999999999999999999999998887766
Q ss_pred hhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHH
Q psy4003 161 SKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAA 240 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa 240 (535)
+|+.|+|||||||||+||++|+++|++.++..++|||+|||+|||
T Consensus 332 -----------------------------------~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa 376 (653)
T PTZ00009 332 -----------------------------------SVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAA 376 (653)
T ss_pred -----------------------------------HCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhh
Confidence 999999999999999999999999977788899999999999999
Q ss_pred HHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCc
Q psy4003 241 VQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDA 320 (535)
Q Consensus 241 ~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (535)
++|+.+++...++++++.++|++|++||++..++.+.+||++|+++|+++++.|++.
T Consensus 377 ~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~----------------------- 433 (653)
T PTZ00009 377 VQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTY----------------------- 433 (653)
T ss_pred hhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEee-----------------------
Confidence 999999985557788999999999999999999999999999999999999999877
Q ss_pred cCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCC
Q psy4003 321 IGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGI 400 (535)
Q Consensus 321 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~ 400 (535)
.++|+.+.|.||||++..+.+|..||++.+.++
T Consensus 434 -----------------------------------------------~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i 466 (653)
T PTZ00009 434 -----------------------------------------------ADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGI 466 (653)
T ss_pred -----------------------------------------------cCCCceEEEEEEecccccCCCCceEEEEEEcCC
Confidence 788999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHH
Q psy4003 401 PPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLES 480 (535)
Q Consensus 401 ~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs 480 (535)
|+.|+|.++|+|+|++|.||+|+|++.+..+++...+.+.+...+||.++++++++.+.++..+|+..+++.++||+||+
T Consensus 467 ~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs 546 (653)
T PTZ00009 467 PPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLEN 546 (653)
T ss_pred CCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 99999998999999999999999999999999988888876667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 481 YAFAVKQAAEDS-G-SKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 481 ~Iy~~r~~Le~~-~-~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
|+|.+|+.|+++ . .++++++++++.+.+++.++|||++++++.++|++|+++|++
T Consensus 547 ~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~ 603 (653)
T PTZ00009 547 YCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVES 603 (653)
T ss_pred HHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 999999999754 3 789999999999999999999998888999999999999973
No 3
>KOG0101|consensus
Probab=100.00 E-value=2.6e-64 Score=543.24 Aligned_cols=396 Identities=70% Similarity=1.043 Sum_probs=382.2
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||||++.+.+| .+.|+++.||++|||.|||+.|++|+..+|+.+++.++..+++++.||+.+||.+|+.||....+++
T Consensus 208 tfdvs~l~i~gG-~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i 286 (620)
T KOG0101|consen 208 TFDVSVLSLEGG-IFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASI 286 (620)
T ss_pred ceeeeeEEeccc-hhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccccccee
Confidence 899999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.+.+|++|.++..+++|.+|+.++.+++.++..+++.+|+++.+++.
T Consensus 287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~--------------------------------- 333 (620)
T KOG0101|consen 287 EIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKS--------------------------------- 333 (620)
T ss_pred ccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCcc---------------------------------
Confidence 99999999999999999999999999999998888888888777666
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+|+.|+|||||||||.+|..++++|+++.+..++||||+||+|||+
T Consensus 334 ----------------------------------~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAav 379 (620)
T KOG0101|consen 334 ----------------------------------DIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAV 379 (620)
T ss_pred ----------------------------------CCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCcc
Q psy4003 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAI 321 (535)
Q Consensus 242 ~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
+||.++|.....+.++.+.|+.|.++||++.++.|.++|++|+.+|+.+.++|++.
T Consensus 380 qaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~------------------------ 435 (620)
T KOG0101|consen 380 QAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTY------------------------ 435 (620)
T ss_pred HhhhccCCccccccceeeeecccccccccccCCcceeeeecccccceeeeeeeeee------------------------
Confidence 99999998777778999999999999999999999999999999999999999998
Q ss_pred CCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCC
Q psy4003 322 GGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 401 (535)
Q Consensus 322 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~ 401 (535)
.|+|+.+.|+||+|++.++.+|+++|.|.+.|+|
T Consensus 436 ----------------------------------------------~dnQp~V~I~VyEger~~~kdn~~lg~feL~gip 469 (620)
T KOG0101|consen 436 ----------------------------------------------SDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIP 469 (620)
T ss_pred ----------------------------------------------cCCCCceeEEEEeccccccccccccceeeecCCC
Confidence 8999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHH
Q psy4003 402 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 481 (535)
Q Consensus 402 ~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~ 481 (535)
|+|+|++.|+++|.+|.||+|+|++.+.++||..++.|++....||.+++++|....+.+..+|...+++.+++|.||+|
T Consensus 470 paprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~ 549 (620)
T KOG0101|consen 470 PAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESY 549 (620)
T ss_pred ccccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 482 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 482 Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
+|.++..+++..+.++++++.++.+.|+++..||+.+..+.+++|++|.++|+.
T Consensus 550 ~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~ 603 (620)
T KOG0101|consen 550 AFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELEL 603 (620)
T ss_pred HHhhhhhhhhhccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHh
Confidence 999999998876799999999999999999999999998889999999999974
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.1e-62 Score=549.56 Aligned_cols=390 Identities=45% Similarity=0.728 Sum_probs=364.5
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.++ .++|++++|+++|||+|||.+|++|+.++|..+++.++..+++++.+|+.+||+||+.||.+..+.+
T Consensus 197 T~dvsi~~~~~~-~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i 275 (653)
T PRK13411 197 TFDVSILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSI 275 (653)
T ss_pred eEEEEEEEEeCC-EEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 899999999999 9999999999999999999999999999999888888878889999999999999999999999999
Q ss_pred EEecccC----CeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~----~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+.. +.++.+.|||++|++++.++++++..+++++|+++++.++
T Consensus 276 ~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~----------------------------- 326 (653)
T PRK13411 276 NLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPE----------------------------- 326 (653)
T ss_pred EEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-----------------------------
Confidence 8876543 3578999999999999999999999999999998888766
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+|||||||||+||++|+++|++..+..++|||+|||+
T Consensus 327 --------------------------------------~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~ 368 (653)
T PRK13411 327 --------------------------------------DIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVAL 368 (653)
T ss_pred --------------------------------------HCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHH
Confidence 999999999999999999999999977788899999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+.+++ .++++.+.|++|+++|+++.++.+.+||++|+++|+++++.|++.
T Consensus 369 GAAi~aa~l~~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~-------------------- 424 (653)
T PRK13411 369 GAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTA-------------------- 424 (653)
T ss_pred HHHHHHHhhcC----CccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEec--------------------
Confidence 99999999987 367899999999999999999999999999999999999999887
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.++|+.+.|.||||++..+.+|..||++.+
T Consensus 425 --------------------------------------------------~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l 454 (653)
T PRK13411 425 --------------------------------------------------TDGQTSVEIHVLQGERAMAKDNKSLGKFLL 454 (653)
T ss_pred --------------------------------------------------cCCCeEEEEEEEEecCcccccCceeeEEEE
Confidence 788999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
.|+|++|.|.++|+|+|++|.||+|+|++.+..+++...+.+.+. .+||++++++++++++++..+|+..+++.++||+
T Consensus 455 ~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~ 533 (653)
T PRK13411 455 TGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQ 533 (653)
T ss_pred cCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888888764 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 478 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
||+|+|.+|+.|++...++++++++++.+.|++.++||+++ +++.++|++++++|++
T Consensus 534 lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~ 590 (653)
T PRK13411 534 ADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQ 590 (653)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 99999999999986447899999999999999999999984 4688999999999874
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.5e-61 Score=540.26 Aligned_cols=387 Identities=41% Similarity=0.676 Sum_probs=358.6
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.+| .++|++++|+++|||+|||.+|++|+.++|..+++.++..+++.+.+|+.+||+||+.||....+.+
T Consensus 223 T~DvSil~~~~g-~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i 301 (657)
T PTZ00186 223 TFDISVLEIAGG-VFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEV 301 (657)
T ss_pred eEEEEEEEEeCC-EEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 899999999999 9999999999999999999999999999999999888877889999999999999999999999999
Q ss_pred EEecccCC----eeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~~----~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+..+ .++.++|||++|+++++++++++..+++++|+++++++.
T Consensus 302 ~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~----------------------------- 352 (657)
T PTZ00186 302 NLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELK----------------------------- 352 (657)
T ss_pred EEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh-----------------------------
Confidence 88765432 468899999999999999999999999998888888766
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+|||||||||.||++|+++| +..+..++|||+|||+
T Consensus 353 --------------------------------------dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~ 393 (657)
T PTZ00186 353 --------------------------------------EINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVAL 393 (657)
T ss_pred --------------------------------------hCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHH
Confidence 9999999999999999999999999 5667789999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+.+++ .++++.+.|++|+++|+++.+|.+.+||++|++||++++..|++.
T Consensus 394 GAAi~a~~l~~----~~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~-------------------- 449 (657)
T PTZ00186 394 GAATLGGVLRG----DVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTA-------------------- 449 (657)
T ss_pred hHHHHHHHhcc----ccCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccc--------------------
Confidence 99999999997 357889999999999999999999999999999999999999988
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.+||+.+.|.||||++..+.+|..||+|.+
T Consensus 450 --------------------------------------------------~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l 479 (657)
T PTZ00186 450 --------------------------------------------------ADNQTQVGIKVFQGEREMAADNQMMGQFDL 479 (657)
T ss_pred --------------------------------------------------cCCCceEEEEEEEecccccccccccceEEE
Confidence 789999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
.|+|+.|+|.++|+|+|++|.||+|+|++.+..+|++..++|.+. ..||+++++++.+.++++..+|...++..+++|+
T Consensus 480 ~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~ 558 (657)
T PTZ00186 480 VGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNN 558 (657)
T ss_pred cCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999865 5699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 478 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
++++++.++..+.+. ..+++++++.+.+.++..++||+.+ +.+.+++++++++|+
T Consensus 559 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~ 613 (657)
T PTZ00186 559 AETQLTTAERQLGEW-KYVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQ 613 (657)
T ss_pred HHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHH
Confidence 999999999999754 3579999999999999999999853 345678888887775
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.1e-61 Score=543.18 Aligned_cols=389 Identities=40% Similarity=0.688 Sum_probs=359.0
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.++ .++|++++|+.+|||.|||.+|++|+.++|..+++.++..+++++.+|+.+||+||+.||.+..+.+
T Consensus 198 T~Dvsv~~~~~g-~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i 276 (668)
T PRK13410 198 TFDVSLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDI 276 (668)
T ss_pred eEEEEEEEEcCC-eEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 899999999999 9999999999999999999999999999999888888878889999999999999999999999999
Q ss_pred EEecccCC----eeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~~----~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+..+ .++...|||++|+++|.++++++..+++++|+++++.++
T Consensus 277 ~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~----------------------------- 327 (668)
T PRK13410 277 SLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPE----------------------------- 327 (668)
T ss_pred EEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh-----------------------------
Confidence 88876532 478899999999999999999999999999998888776
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+|||||||||+|+++|+++| +.++..++|||+|||+
T Consensus 328 --------------------------------------dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~ 368 (668)
T PRK13410 328 --------------------------------------DIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAV 368 (668)
T ss_pred --------------------------------------hCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHH
Confidence 9999999999999999999999999 5778899999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+++++ .++++.+.|++|+++|+++.+|.+.+|||+|+++|++++..|++.
T Consensus 369 GAAi~aa~ls~----~~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~-------------------- 424 (668)
T PRK13410 369 GAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTS-------------------- 424 (668)
T ss_pred hHHHHHHhhcc----cccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceec--------------------
Confidence 99999999987 467899999999999999999999999999999999999999887
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.+||+.+.|.||||++..+.+|..||+|.|
T Consensus 425 --------------------------------------------------~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l 454 (668)
T PRK13410 425 --------------------------------------------------ENNQSSVEIHVWQGEREMASDNKSLGRFKL 454 (668)
T ss_pred --------------------------------------------------cCCCcEEEEEEEeeccccccCCceEEEEEE
Confidence 789999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
+|+|++|+|.++|+|+|++|.||+|+|++.+..+|++..+.|... .+||+++++++.+++.++..+|+..+++.++||+
T Consensus 455 ~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~ 533 (668)
T PRK13410 455 SGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNR 533 (668)
T ss_pred eCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888764 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc---C-CCCCHHHHHHHHHHHHHHHHHHccCC-ccCHHHHHHHHHHhh
Q psy4003 478 LESYAFAVKQAAEDS---G-SKLSDADKTSVSQACSATLTWLEGNS-LAEKEEFEDRLKTLQ 534 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~---~-~~~t~~ek~~i~~~l~e~~~WL~~~~-~~~~~~~~~~l~~L~ 534 (535)
+|+|+|.+++.|.+. . .++++++++++...|++.++||+++. ...++.|.++++.|+
T Consensus 534 ~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~ 595 (668)
T PRK13410 534 ALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALY 595 (668)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999762 2 78999999999999999999999873 455555666655553
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=8.6e-61 Score=537.34 Aligned_cols=374 Identities=46% Similarity=0.759 Sum_probs=350.0
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.++ .++|++++|+.+|||+|||.+|++|+.++|..+++.++..+++.+.+|+.+||+||+.||.+..+.+
T Consensus 235 T~DvSi~~~~~~-~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i 313 (673)
T PLN03184 235 TFDVSVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSI 313 (673)
T ss_pred eEEEEEEEecCC-EEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceE
Confidence 899999999999 9999999999999999999999999999999888888888899999999999999999999999999
Q ss_pred EEecccC----CeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~----~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+.. +.++.++|||++|+++|.++++++..+++++|+++++.++
T Consensus 314 ~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~----------------------------- 364 (673)
T PLN03184 314 SLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFK----------------------------- 364 (673)
T ss_pred EEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh-----------------------------
Confidence 8876542 3578899999999999999999999999999998887766
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+|||||||||+||++|+++| +..+..++|||+|||+
T Consensus 365 --------------------------------------dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~ 405 (673)
T PLN03184 365 --------------------------------------DIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVAL 405 (673)
T ss_pred --------------------------------------HccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHH
Confidence 9999999999999999999999999 5778889999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+.+++ +++++.+.|++|++||+++.++.+.+|||+|+++|++++..|++.
T Consensus 406 GAAi~aa~ls~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~-------------------- 461 (673)
T PLN03184 406 GAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTA-------------------- 461 (673)
T ss_pred HHHHHHHHhcc----CccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeee--------------------
Confidence 99999999987 467889999999999999999999999999999999999999887
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.++|..+.|.||||++....+|..||+|.|
T Consensus 462 --------------------------------------------------~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i 491 (673)
T PLN03184 462 --------------------------------------------------ADGQTSVEINVLQGEREFVRDNKSLGSFRL 491 (673)
T ss_pred --------------------------------------------------cCCCcEEEEEEEeecccccccCceEEEEEE
Confidence 789999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
.++|+.|+|.++|+|+|.+|.||+|+|++.+..+++...+.+... .+||++++++++++++++..+|+..+++.++||+
T Consensus 492 ~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~ 570 (673)
T PLN03184 492 DGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQ 570 (673)
T ss_pred eCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888888754 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCC
Q psy4003 478 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNS 519 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~ 519 (535)
||+|+|.+|+.|.+..+++++++++++.+.|++.++||+++.
T Consensus 571 lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~d 612 (673)
T PLN03184 571 ADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGS 612 (673)
T ss_pred HHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999753378999999999999999999999873
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=6.6e-61 Score=537.88 Aligned_cols=386 Identities=47% Similarity=0.775 Sum_probs=359.3
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.+| .++|++++|+.+|||+|||.+|++|+.++|+.+++.++..+++++.+|+.+||+||+.||.+..+.+
T Consensus 237 T~DvSv~~~~~g-~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i 315 (663)
T PTZ00400 237 TFDISILEILGG-VFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEI 315 (663)
T ss_pred eEEEEEEEecCC-eeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEE
Confidence 899999999999 9999999999999999999999999999999888888878889999999999999999999998888
Q ss_pred EEecccCC----eeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~~----~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+..+ .++.++|||++|+++++++++++..+++++|+++++.++
T Consensus 316 ~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~----------------------------- 366 (663)
T PTZ00400 316 NLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKD----------------------------- 366 (663)
T ss_pred EEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-----------------------------
Confidence 88765432 578999999999999999999999999999998888776
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+|||||||||+||++|+++| +.++..++|||+|||+
T Consensus 367 --------------------------------------~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~ 407 (663)
T PTZ00400 367 --------------------------------------ELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAM 407 (663)
T ss_pred --------------------------------------HCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceee
Confidence 9999999999999999999999999 5678889999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+.+++ .++++.+.|++|+++|+++.+|.+.+||++|+++|++++..|++.
T Consensus 408 GAAi~aa~l~~----~~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~-------------------- 463 (663)
T PTZ00400 408 GAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTA-------------------- 463 (663)
T ss_pred ccHHHHHhhcC----CccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeec--------------------
Confidence 99999999987 357889999999999999999999999999999999999999887
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.++|+.+.|.||+|++..+.+|..||++.+
T Consensus 464 --------------------------------------------------~d~q~~~~i~i~ege~~~~~~n~~lg~~~i 493 (663)
T PTZ00400 464 --------------------------------------------------ADNQTQVGIKVFQGEREMAADNKLLGQFDL 493 (663)
T ss_pred --------------------------------------------------cCCCceEEEEEEEecCccCCcCceeEEEEE
Confidence 789999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
.|+|+.|.|.++|+|+|.+|.||+|+|++.+..+++...++++.. .+||.+++++++++++++..+|+..+++.++||+
T Consensus 494 ~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~ 572 (663)
T PTZ00400 494 VGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNE 572 (663)
T ss_pred cCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888765 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 478 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
||+|+|.+|+.|.+....+++++++++.+.+++.++||+++ +.++|++++++|+
T Consensus 573 lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~ 626 (663)
T PTZ00400 573 AETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQ 626 (663)
T ss_pred HHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 99999999999976337899999999999999999999987 4678888888876
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.2e-60 Score=532.40 Aligned_cols=386 Identities=47% Similarity=0.775 Sum_probs=361.1
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||+||+++.++ .++|++++|+.+|||.|||.+|++|+.++|+.+++.++..+++.+.+|+.+||+||+.||.+..+.+
T Consensus 196 T~dvsv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i 274 (627)
T PRK00290 196 TFDVSILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEI 274 (627)
T ss_pred eEEEEEEEEeCC-eEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 899999999999 9999999999999999999999999999999888888878899999999999999999999999999
Q ss_pred EEecccC----CeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~----~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+.. +.++.++|||++|++++.++++++..+++++|+++++.+.
T Consensus 275 ~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~----------------------------- 325 (627)
T PRK00290 275 NLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVS----------------------------- 325 (627)
T ss_pred EEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh-----------------------------
Confidence 8876653 3678999999999999999999999999999998888766
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+||||+||||+|++.|+++| +..+..++|||+|||+
T Consensus 326 --------------------------------------~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~ 366 (627)
T PRK00290 326 --------------------------------------DIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAI 366 (627)
T ss_pred --------------------------------------hCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHH
Confidence 9999999999999999999999999 6778899999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+.+++ +++++.+.|++|+++|+++.++.+.+||++|+++|+++++.|++.
T Consensus 367 GAa~~aa~l~~----~~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~-------------------- 422 (627)
T PRK00290 367 GAAIQGGVLAG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTA-------------------- 422 (627)
T ss_pred hHHHHHHHhcC----CccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEec--------------------
Confidence 99999999987 567899999999999999999999999999999999999999887
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.++|+.+.|.||+|++..+.+|..||++.+
T Consensus 423 --------------------------------------------------~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i 452 (627)
T PRK00290 423 --------------------------------------------------ADNQPAVTIHVLQGEREMAADNKSLGRFNL 452 (627)
T ss_pred --------------------------------------------------CCCcceEEEEEEEecccccCcCceEEEEEE
Confidence 789999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
.++|+.|+|.++|+++|++|.||+|+|++.+..+++...+.+.+. .+||+++++++++.+.++...|+..+++.++||+
T Consensus 453 ~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~ 531 (627)
T PRK00290 453 TGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQ 531 (627)
T ss_pred CCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 999999999989999999999999999999999999988888765 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 478 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
||+|+|.+|+.|++...++++++++++.+.|++.++||+++ +.++|++++++|+
T Consensus 532 le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~ 585 (627)
T PRK00290 532 ADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELT 585 (627)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 99999999999974337899999999999999999999977 5678999988886
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=2.9e-60 Score=528.90 Aligned_cols=386 Identities=48% Similarity=0.780 Sum_probs=358.6
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||+||+++.++ .++|+++.|+.+|||.|||..|++|+.++|..+++.++..+++.+.+|+.+||+||+.||.+..+.+
T Consensus 194 t~dvsv~~~~~~-~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i 272 (595)
T TIGR02350 194 TFDVSILEIGDG-VFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEI 272 (595)
T ss_pred eEEEEEEEecCC-eEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEE
Confidence 899999999999 9999999999999999999999999999999888888878889999999999999999999999999
Q ss_pred EEecccC----CeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~----~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+.. +.++.++|||++|++++.++++++..+++++|+++++.+.
T Consensus 273 ~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~----------------------------- 323 (595)
T TIGR02350 273 NLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSAS----------------------------- 323 (595)
T ss_pred EeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh-----------------------------
Confidence 8876543 3578999999999999999999999999999999888766
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+||||+||||+|++.|+++|| .++..++|||+|||+
T Consensus 324 --------------------------------------~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~ 364 (595)
T TIGR02350 324 --------------------------------------DIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAI 364 (595)
T ss_pred --------------------------------------HCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHH
Confidence 99999999999999999999999994 778899999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+.+++ .++++.+.|++|+++|+++.++.+.+||++|+++|+++++.|++.
T Consensus 365 GAa~~aa~l~~----~~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~-------------------- 420 (595)
T TIGR02350 365 GAAIQGGVLKG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTA-------------------- 420 (595)
T ss_pred HHHHHHHHhcC----CcccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeecc--------------------
Confidence 99999999987 367899999999999999999999999999999999999999887
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.++|..+.|.||+|++..+.+|..||++.+
T Consensus 421 --------------------------------------------------~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i 450 (595)
T TIGR02350 421 --------------------------------------------------ADNQPAVDIHVLQGERPMAADNKSLGRFEL 450 (595)
T ss_pred --------------------------------------------------CCCCcEEEEEEEeecccccccCcEeEEEEE
Confidence 789999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
+|+|+.|.|.++|+++|++|.||+|+|++.+..+++...+.+... .+||+++++++++++.++...|+..+++.++||+
T Consensus 451 ~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~ 529 (595)
T TIGR02350 451 TGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNN 529 (595)
T ss_pred CCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888765 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 478 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
||+|+|.+|+.|++...++++++++++.+.+++.++||+++ +.+++++++++|+
T Consensus 530 lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~ 583 (595)
T TIGR02350 530 ADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQ 583 (595)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 99999999999975447899999999999999999999987 4456777777665
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=5.3e-60 Score=528.27 Aligned_cols=386 Identities=48% Similarity=0.771 Sum_probs=357.5
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.++ .++|++++|+.+|||+|||..|++|+.++|+.+++.++..+++.+.+|+.+||+||+.||.+..+.+
T Consensus 198 T~DvSv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i 276 (621)
T CHL00094 198 TFDVSILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEI 276 (621)
T ss_pred eEEEEEEEEcCC-EEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 899999999999 9999999999999999999999999999999998888878889999999999999999999988888
Q ss_pred EEecccC----CeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~----~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+.. +.++...|+|++||+++.++++++..+++++|+++++.+.
T Consensus 277 ~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~----------------------------- 327 (621)
T CHL00094 277 NLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKS----------------------------- 327 (621)
T ss_pred EEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh-----------------------------
Confidence 8876543 3578889999999999999999999999999998888766
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+||||+||||.|+++|+++| +.++..++|||+|||+
T Consensus 328 --------------------------------------~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~ 368 (621)
T CHL00094 328 --------------------------------------DIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAI 368 (621)
T ss_pred --------------------------------------hCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHh
Confidence 9999999999999999999999999 5778889999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+.+++ ..+++.+.|++|+++|+++.++.+.+|||+|+++|++++..|++.
T Consensus 369 GAA~~aa~ls~----~~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~-------------------- 424 (621)
T CHL00094 369 GAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTA-------------------- 424 (621)
T ss_pred hhHHHHHHhcC----CccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEec--------------------
Confidence 99999999987 457889999999999999999999999999999999999999887
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.++|..+.|.||||++..+.+|..||+|.|
T Consensus 425 --------------------------------------------------~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i 454 (621)
T CHL00094 425 --------------------------------------------------VDNQTNVEIHVLQGERELAKDNKSLGTFRL 454 (621)
T ss_pred --------------------------------------------------cCCCcEEEEEEEeeccccCCCCCEEEEEEE
Confidence 788999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
.|+|+.|.|.++|+|+|++|.||+|+|++.+..+++...+.+.+. .+||.++++++++++.++..+|+..+++.++||+
T Consensus 455 ~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~ 533 (621)
T CHL00094 455 DGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQ 533 (621)
T ss_pred eCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 999999999989999999999999999999999998888888754 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 478 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
||+|+|.+|+.|++...++++++++++.+.+++.++||+++. .+++++++++|+
T Consensus 534 le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~---~~~~~~~~~~l~ 587 (621)
T CHL00094 534 AESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDN---YESIKSLLEELQ 587 (621)
T ss_pred hHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 999999999999753378899999999999999999999873 367777777775
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.6e-58 Score=512.18 Aligned_cols=382 Identities=37% Similarity=0.588 Sum_probs=349.7
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.++ .++|++++|+.+|||+|||.+|++|+.+++. .+...+++.+.+|+.+||++|+.||.+..+.+
T Consensus 192 T~DvSi~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i 266 (599)
T TIGR01991 192 TFDVSILKLTKG-VFEVLATGGDSALGGDDFDHALAKWILKQLG----ISADLNPEDQRLLLQAARAAKEALTDAESVEV 266 (599)
T ss_pred eEEEEEEEEcCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC----CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 899999999999 9999999999999999999999999997753 33345678889999999999999999988888
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.++. +|.++.++|||++|+++++++++++..+++++|+++++.+.
T Consensus 267 ~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~--------------------------------- 311 (599)
T TIGR01991 267 DFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVE--------------------------------- 311 (599)
T ss_pred EEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh---------------------------------
Confidence 8864 68899999999999999999999999999999998888766
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+|+.|+||||+||||+|+++|+++| +..+..++|||+|||.|||+
T Consensus 312 ----------------------------------~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai 356 (599)
T TIGR01991 312 ----------------------------------EIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAI 356 (599)
T ss_pred ----------------------------------hCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999 56677889999999999999
Q ss_pred HHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCcc
Q psy4003 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAI 321 (535)
Q Consensus 242 ~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
+|+.+++ .++.+++.+.|++|+++|+++.+|.+.+|||+|+++|++++..|++.
T Consensus 357 ~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~------------------------ 410 (599)
T TIGR01991 357 QADLLAG--NRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTY------------------------ 410 (599)
T ss_pred HHHHhcc--ccccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEc------------------------
Confidence 9999998 56667899999999999999999999999999999999999999988
Q ss_pred CCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCC
Q psy4003 322 GGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 401 (535)
Q Consensus 322 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~ 401 (535)
.++|..+.|.||||++..+.+|..||+|.|.|+|
T Consensus 411 ----------------------------------------------~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~ 444 (599)
T TIGR01991 411 ----------------------------------------------KDGQTAMVIHVVQGERELVEDCRSLARFELRGIP 444 (599)
T ss_pred ----------------------------------------------cCCCeEEEEEEEeecccccccCceEEEEEEcCCC
Confidence 7899999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHH
Q psy4003 402 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 481 (535)
Q Consensus 402 ~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~ 481 (535)
+.|.|.++|+|+|++|.||+|+|++.+..+|++..+.+.+. ..||+++++++.+.+.++..+|...++..+++|++|++
T Consensus 445 ~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 523 (599)
T TIGR01991 445 PMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERI 523 (599)
T ss_pred CCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888765 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 482 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 482 Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
+|.++..+.+....+++++|+++...+++.++||+++. .++++++.++|+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~l~ 573 (599)
T TIGR01991 524 LEALQAALAADGDLLSEDERAAIDAAMEALQKALQGDD---ADAIKAAIEALE 573 (599)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 99999999764467899999999999999999999763 345555555543
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.2e-57 Score=508.04 Aligned_cols=378 Identities=36% Similarity=0.581 Sum_probs=343.8
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.++ .++|++++|+.+|||+|||.+|++|+.++++... ..+++.+.+|+.+||+||+.||.+..+.+
T Consensus 212 T~DvSv~~~~~~-~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~~~----~~~~~~~~~L~~~ae~aK~~LS~~~~~~i 286 (616)
T PRK05183 212 TFDISILRLSKG-VFEVLATGGDSALGGDDFDHLLADWILEQAGLSP----RLDPEDQRLLLDAARAAKEALSDADSVEV 286 (616)
T ss_pred eEEEEEEEeeCC-EEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCc----CCCHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 899999999999 9999999999999999999999999998875433 25678889999999999999999988888
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.+..+ . ..|||++|++++.++++++..+++++|+++++.+.
T Consensus 287 ~i~~~-~-----~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~--------------------------------- 327 (616)
T PRK05183 287 SVALW-Q-----GEITREQFNALIAPLVKRTLLACRRALRDAGVEAD--------------------------------- 327 (616)
T ss_pred EEecC-C-----CeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---------------------------------
Confidence 87532 2 24999999999999999999999998888887766
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+|+.|+|||||||||+|++.|+++| +..+..++|||+|||+|||+
T Consensus 328 ----------------------------------~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi 372 (616)
T PRK05183 328 ----------------------------------EVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAI 372 (616)
T ss_pred ----------------------------------cCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHH
Confidence 9999999999999999999999999 45667789999999999999
Q ss_pred HHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCcc
Q psy4003 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAI 321 (535)
Q Consensus 242 ~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
+|+.+++ .+..+++.+.|++|+++|+++.+|.+.+|||+|+++|++++..|++.
T Consensus 373 ~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~------------------------ 426 (616)
T PRK05183 373 QADILAG--NKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTF------------------------ 426 (616)
T ss_pred HHHHhcc--ccccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEec------------------------
Confidence 9999998 45567899999999999999999999999999999999999999987
Q ss_pred CCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCC
Q psy4003 322 GGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 401 (535)
Q Consensus 322 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~ 401 (535)
.++|+.+.|.||||++..+.+|..||++.|.|+|
T Consensus 427 ----------------------------------------------~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~ 460 (616)
T PRK05183 427 ----------------------------------------------KDGQTAMAIHVVQGERELVADCRSLARFELRGIP 460 (616)
T ss_pred ----------------------------------------------cCCCeEEEEEEecccccccccccEEEEEEeCCCC
Confidence 7899999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHH
Q psy4003 402 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 481 (535)
Q Consensus 402 ~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~ 481 (535)
+.|+|.++|+|+|++|.||+|+|++.+..+|+...+.+.+. ..||+++++++.+.+.++..+|...++..+++|++|++
T Consensus 461 ~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 539 (616)
T PRK05183 461 PMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERV 539 (616)
T ss_pred CCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888765 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 482 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 482 Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
++.+++.+.+....+++++++++.+.+++.++||+.+ +.+++++++++|+
T Consensus 540 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~ 589 (616)
T PRK05183 540 LEALQAALAADGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALD 589 (616)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 9999999976446789999999999999999999876 4456666666664
No 14
>KOG0102|consensus
Probab=100.00 E-value=1.2e-57 Score=474.71 Aligned_cols=388 Identities=45% Similarity=0.738 Sum_probs=356.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||+||+++.+| .|+|.++.||.+|||+|||..+++|+...|....++++..+.++++||+.++|+||++||....+.+
T Consensus 223 tfdisilei~~g-vfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei 301 (640)
T KOG0102|consen 223 TFDISILEIEDG-VFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEI 301 (640)
T ss_pred eeeeeeehhccc-eeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhccccee
Confidence 899999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCC----eeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHEG----IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~~----~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
+++.++.+ .++++++||.+||+++.++++|++.++.++|++|++..+
T Consensus 302 ~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~----------------------------- 352 (640)
T KOG0102|consen 302 NLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSS----------------------------- 352 (640)
T ss_pred ccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChh-----------------------------
Confidence 99887755 689999999999999988888888877777777766655
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
||+.|+||||.+|||+|++.+.++| |..+....||||+||.
T Consensus 353 --------------------------------------di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~ 393 (640)
T KOG0102|consen 353 --------------------------------------DINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAG 393 (640)
T ss_pred --------------------------------------hhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhcc
Confidence 9999999999999999999999999 7889999999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++++.++| .++++.+.|+.|.++||++.+|.++.|+++|+.||.++++.|.+.
T Consensus 394 GAaiqggvl~g----eVkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqvfsta-------------------- 449 (640)
T KOG0102|consen 394 GAAIQGGVLSG----EVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTA-------------------- 449 (640)
T ss_pred chhhccchhhc----cccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhheeec--------------------
Confidence 99999999998 789999999999999999999999999999999999999999998
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.|+|+.+.|.|+||++++..+|.++|+|.+
T Consensus 450 --------------------------------------------------adgqt~V~ikv~qgere~~~dnk~lG~f~l 479 (640)
T KOG0102|consen 450 --------------------------------------------------ADGQTQVEIKVFQGEREMVNDNKLLGSFIL 479 (640)
T ss_pred --------------------------------------------------ccCCceEEEEeeechhhhhccCcccceeee
Confidence 889999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
.|+||.|+|.|.|+|+|.+|.||+++|++.+..++|...+++... ..||+++++.+....+++...|...+++.+.+|.
T Consensus 480 ~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nk 558 (640)
T KOG0102|consen 480 QGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEAERLASTDKEKREAIETKNK 558 (640)
T ss_pred cccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999886 5699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHh
Q psy4003 478 LESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTL 533 (535)
Q Consensus 478 LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L 533 (535)
.+++++.....+....+..+.++..+|+..+....+.+-.-...+.++...+...|
T Consensus 559 a~s~~~~te~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l 614 (640)
T KOG0102|consen 559 ADSIIYDTEKSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSAL 614 (640)
T ss_pred hhheecCchhhhhhhhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHH
Confidence 99999999999988777788888889999998888877631111224444444444
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=8.2e-55 Score=482.22 Aligned_cols=363 Identities=31% Similarity=0.480 Sum_probs=323.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.++ .++|++++|+++|||+|||.+|++|+.++|....+ . +.++.||+||+.||.+.....
T Consensus 204 T~DvSi~~~~~~-~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~------~----~~~~~~ekaK~~LS~~~~~~~ 272 (595)
T PRK01433 204 TFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNS------I----DTLQLAKKAKETLTYKDSFNN 272 (595)
T ss_pred cEEEEEEEEeCC-eEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCC------H----HHHHHHHHHHHhcCCCccccc
Confidence 899999999999 99999999999999999999999999988743221 1 123459999999998764221
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
..++|||++|+++++++++++..+++++|++++ +.
T Consensus 273 ----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~--------------------------------- 307 (595)
T PRK01433 273 ----------DNISINKQTLEQLILPLVERTINIAQECLEQAG--NP--------------------------------- 307 (595)
T ss_pred ----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cc---------------------------------
Confidence 168899999999999999999999999998887 34
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+|+.|+|||||||||+|+++|+++| +.++..++|||+|||+|||+
T Consensus 308 ----------------------------------~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi 352 (595)
T PRK01433 308 ----------------------------------NIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAAL 352 (595)
T ss_pred ----------------------------------cCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHH
Confidence 8999999999999999999999999 56778899999999999999
Q ss_pred HHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCcc
Q psy4003 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAI 321 (535)
Q Consensus 242 ~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
+|+.+++ ...++.+.|++|+++|+++.+|.+.+||++|+++|++++..|++.
T Consensus 353 ~a~~l~~----~~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~------------------------ 404 (595)
T PRK01433 353 QAENLIA----PHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTY------------------------ 404 (595)
T ss_pred HHHHhhC----CccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEee------------------------
Confidence 9999986 235788999999999999999999999999999999999999988
Q ss_pred CCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCC
Q psy4003 322 GGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 401 (535)
Q Consensus 322 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~ 401 (535)
.++|+.+.|.||||++..+.+|..||+|.+.|+|
T Consensus 405 ----------------------------------------------~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~ 438 (595)
T PRK01433 405 ----------------------------------------------ADNQTGIQFHILQGEREMAADCRSLARFELKGLP 438 (595)
T ss_pred ----------------------------------------------cCCCeEEEEEEEeccccccCCCcEEEEEEEcCCC
Confidence 7899999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHH
Q psy4003 402 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 481 (535)
Q Consensus 402 ~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~ 481 (535)
+.|+|.++|+|+|++|.||+|+|++.+..+|+...+.|.+. ..||+++++++.+.++++..+|...++..+++|+++++
T Consensus 439 ~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 517 (595)
T PRK01433 439 PMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517 (595)
T ss_pred CCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865 45999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHh
Q psy4003 482 AFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTL 533 (535)
Q Consensus 482 Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L 533 (535)
++.+++.+++....+++++++.+.+.+++.++||+.+ +...+++.+++|
T Consensus 518 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~ 566 (595)
T PRK01433 518 IFNIERAIAELTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEF 566 (595)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 9999999976445689999999999999999999865 333444444443
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.9e-54 Score=482.54 Aligned_cols=389 Identities=44% Similarity=0.756 Sum_probs=355.7
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhcc--CCce
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS--STEA 79 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~--~~~~ 79 (535)
|||+|++++.++ .++|+++.|+..+||.+||.+|++|+.++|+..++.++..+++.+.+|+.+||++|+.||. +...
T Consensus 199 t~dvs~~~~~~~-~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~ 277 (602)
T PF00012_consen 199 TFDVSVVEFSNG-QFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEI 277 (602)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEE
T ss_pred eEeeeehhcccc-cccccccccccccccceecceeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999 9999999999999999999999999999999988888888899999999999999999999 5666
Q ss_pred eEEEecccC-CeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCccccc
Q psy4003 80 SLEIDALHE-GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRD 158 (535)
Q Consensus 80 ~i~i~~~~~-~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~ 158 (535)
.+.+..+.+ |.++.+.|||++|++++.++++++..+++++++++++.++
T Consensus 278 ~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~------------------------------ 327 (602)
T PF00012_consen 278 TISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKE------------------------------ 327 (602)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GG------------------------------
T ss_pred ccccccccccccccccccccceeccccccccccccccccccccccccccc------------------------------
Confidence 677776676 8899999999999999999999999999999999887766
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhh
Q psy4003 159 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYG 238 (535)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~G 238 (535)
+|+.|+||||+||+|+|+++|++.|+ ..+..++||++|||+|
T Consensus 328 -------------------------------------~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~G 369 (602)
T PF00012_consen 328 -------------------------------------DIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARG 369 (602)
T ss_dssp -------------------------------------GESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHH
T ss_pred -------------------------------------ccceeEEecCcccchhhhhhhhhccc-cccccccccccccccc
Confidence 99999999999999999999999995 7888999999999999
Q ss_pred HHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCC
Q psy4003 239 AAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWP 318 (535)
Q Consensus 239 Aa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (535)
||++|+.+++ .++++++.+.|++|+++|++..++.+.+++++|+++|+.....|.+.
T Consensus 370 Aa~~a~~~~~--~~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~--------------------- 426 (602)
T PF00012_consen 370 AALYAAILSG--SFRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTV--------------------- 426 (602)
T ss_dssp HHHHHHHHHT--SCSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEES---------------------
T ss_pred cccchhhhcc--ccccccccccccccccccccccccccccccccccccccccccccchh---------------------
Confidence 9999999998 68889999999999999999999999999999999999999888877
Q ss_pred CccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEc
Q psy4003 319 DAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLT 398 (535)
Q Consensus 319 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~ 398 (535)
.++|..+.|.||+|+.....+|..||++.+.
T Consensus 427 -------------------------------------------------~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~ 457 (602)
T PF00012_consen 427 -------------------------------------------------TDNQTSISIDIYEGESSSFEDNKKIGSYTIS 457 (602)
T ss_dssp -------------------------------------------------STTCSEEEEEEEESSSSBGGGSEEEEEEEEE
T ss_pred -------------------------------------------------ccccccccceeeecccccccccccccccccc
Confidence 6778899999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhH
Q psy4003 399 GIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKL 478 (535)
Q Consensus 399 ~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~L 478 (535)
++++.+.|.++|+++|++|.+|+|+|++.+..++....+.+..... ++++++++++++++++...|...++..+++|+|
T Consensus 458 ~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~l 536 (602)
T PF00012_consen 458 GIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNEL 536 (602)
T ss_dssp S-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccceeeEEeeeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHH
Confidence 9999999999999999999999999999999888888888877644 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccC-CccCHHHHHHHHHHhhC
Q psy4003 479 ESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGN-SLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 479 Es~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~-~~~~~~~~~~~l~~L~~ 535 (535)
|+++|.+|+.+++....++++++ .+.+++..+||+++ ..++.++|++|+++|++
T Consensus 537 E~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~ 591 (602)
T PF00012_consen 537 ESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKK 591 (602)
T ss_dssp HHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 99999999999887667777776 88899999999987 56889999999999973
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-53 Score=469.92 Aligned_cols=385 Identities=51% Similarity=0.801 Sum_probs=363.7
Q ss_pred CceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCcee
Q psy4003 1 MRTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEAS 80 (535)
Q Consensus 1 ~T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~ 80 (535)
.||||||+++.+| .++|++++|+++|||+|||.+|+.|+..+|..+++.++..+++.++||+.+||++|+.||....+.
T Consensus 182 GTfDvSll~~~~g-~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~ 260 (579)
T COG0443 182 GTFDVSLLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTS 260 (579)
T ss_pred CCEEEEEEEEcCC-EEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccc
Confidence 4999999999999 999999999999999999999999999999999998998899999999999999999999999999
Q ss_pred EEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccch
Q psy4003 81 LEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFY 160 (535)
Q Consensus 81 i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~ 160 (535)
+.++.+..+.++..+|+|++||+++.+++.++..++++++.++++++.
T Consensus 261 i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~-------------------------------- 308 (579)
T COG0443 261 INLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKS-------------------------------- 308 (579)
T ss_pred cchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--------------------------------
Confidence 999887777788999999999999999999999998888888888766
Q ss_pred hhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHH
Q psy4003 161 SKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAA 240 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa 240 (535)
+|+.|+||||+||||+|++.+.++| ++++..++|||++||.|||
T Consensus 309 -----------------------------------~I~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa 352 (579)
T COG0443 309 -----------------------------------DIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAA 352 (579)
T ss_pred -----------------------------------hCceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHH
Confidence 9999999999999999999999999 4889999999999999999
Q ss_pred HHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCc
Q psy4003 241 VQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDA 320 (535)
Q Consensus 241 ~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (535)
++|+.+++ ..+++.+.|++|.++|+++.++.+.+++++|+.+|.++...|++.
T Consensus 353 ~qa~~l~~----~~~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~----------------------- 405 (579)
T COG0443 353 IQAAVLSG----EVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTA----------------------- 405 (579)
T ss_pred HHHHhhcC----cccCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEee-----------------------
Confidence 99999998 233889999999999999999999999999999999999999988
Q ss_pred cCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCC
Q psy4003 321 IGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGI 400 (535)
Q Consensus 321 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~ 400 (535)
.|+|..+.+.+++|++....+|..+|.|.+.++
T Consensus 406 -----------------------------------------------~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i 438 (579)
T COG0443 406 -----------------------------------------------ADGQTAVAIHVFQGEREMAADNKSLGRFELDGI 438 (579)
T ss_pred -----------------------------------------------cCCCceeEEEEEecchhhcccCceeEEEECCCC
Confidence 789999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHH
Q psy4003 401 PPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLES 480 (535)
Q Consensus 401 ~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs 480 (535)
||+|+|.+.|+++|.+|.||+++|++.+..++++..+.|..... |++++++.+.+....+...|...++..+.+|..++
T Consensus 439 ~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~ 517 (579)
T COG0443 439 PPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAES 517 (579)
T ss_pred CCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999867 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhh
Q psy4003 481 YAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQ 534 (535)
Q Consensus 481 ~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~ 534 (535)
+++.++..|.+.. .+++++++++...+.+.++||+.+ .++++.+.++|+
T Consensus 518 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~l~ 566 (579)
T COG0443 518 LIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEGE----KEEIKAKIEELQ 566 (579)
T ss_pred HHHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHH
Confidence 9999999998877 899999999999999999999982 778888777765
No 18
>KOG0103|consensus
Probab=100.00 E-value=6.5e-51 Score=435.53 Aligned_cols=389 Identities=32% Similarity=0.510 Sum_probs=341.6
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
.+-+|++.+..| .+.++++.+|.++||+|||..|.+||..+|+.+++++...++++..||+..||+.|+.||+++...+
T Consensus 207 ~~q~si~aF~kG-~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~pl 285 (727)
T KOG0103|consen 207 SYQVSIAAFTKG-KLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPL 285 (727)
T ss_pred cceeeeeeeccC-cceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCc
Confidence 356899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
+|+++.++.|.+..|+|++||++|.++++|+..++..+|.++++..+
T Consensus 286 NIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~e--------------------------------- 332 (727)
T KOG0103|consen 286 NIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVE--------------------------------- 332 (727)
T ss_pred chhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccc---------------------------------
Confidence 99999999999999999999999999999999988888888887777
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
||+.|.+|||+||||.|+++|.++| |+.+.+++|.|||||+|||+
T Consensus 333 ----------------------------------di~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~AL 377 (727)
T KOG0103|consen 333 ----------------------------------DIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAAL 377 (727)
T ss_pred ----------------------------------cceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHH
Confidence 9999999999999999999999999 79999999999999999999
Q ss_pred HHHHHhCCCcccccceeeeecccCcceeEeeC-----CEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCC
Q psy4003 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAG-----GVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSC 316 (535)
Q Consensus 242 ~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~-----~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (535)
++|++++ .++++++.++|+.|+++.+.|.. +....+|++|.++|.++..+|.+.
T Consensus 378 qcAIlSP--~frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk------------------- 436 (727)
T KOG0103|consen 378 QCAILSP--TFRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRK------------------- 436 (727)
T ss_pred HHHhcCc--cccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEec-------------------
Confidence 9999999 99999999999999999998753 344789999999999999999877
Q ss_pred CCCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCc-ccccCCCceeeE
Q psy4003 317 WPDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGER-AMTKDNNLLGTF 395 (535)
Q Consensus 317 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~-~~~~~~~~ig~~ 395 (535)
..+++.+++... .++.-...|++|
T Consensus 437 -------------------------------------------------------~~F~lea~yt~~~~lp~~~~kI~~~ 461 (727)
T KOG0103|consen 437 -------------------------------------------------------GPFTLEAKYTKVNKLPYPKPKIEKW 461 (727)
T ss_pred -------------------------------------------------------CceEEEEEeccccccCCCCCceeeE
Confidence 123344444442 233234578999
Q ss_pred EEcCCCCCCC-CCCeEEEEEEeCCCceEEEEEeecC----------------------------CCc----ceeEEEecC
Q psy4003 396 NLTGIPPAPR-GVPKIEVTFDLDANGILNVSAKDSS----------------------------TGK----AERITIQND 442 (535)
Q Consensus 396 ~i~~~~~~~~-g~~~I~v~f~id~nGil~v~~~~~~----------------------------t~k----~~~i~i~~~ 442 (535)
.+.++.+... +..+++|+..++.+|++.+..+..- .++ ...+.+...
T Consensus 462 ~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~ 541 (727)
T KOG0103|consen 462 TITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAY 541 (727)
T ss_pred EecccccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceee
Confidence 9999877666 4468999999999999999755310 000 011222222
Q ss_pred -CCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHccC-C
Q psy4003 443 -KGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG-SKLSDADKTSVSQACSATLTWLEGN-S 519 (535)
Q Consensus 443 -~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~Iy~~r~~Le~~~-~~~t~~ek~~i~~~l~e~~~WL~~~-~ 519 (535)
.+.|+..+++....+..+|..+|+...++..+||.||+|+|.+|++|.+.+ .++++++++++...|+++++|||++ +
T Consensus 542 ~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGe 621 (727)
T KOG0103|consen 542 TKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGE 621 (727)
T ss_pred eccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 357999999999999999999999999999999999999999999999987 8899999999999999999999985 7
Q ss_pred ccCHHHHHHHHHHhhC
Q psy4003 520 LAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 520 ~~~~~~~~~~l~~L~~ 535 (535)
+.++..|..|+.+|++
T Consensus 622 d~~k~~Y~~kl~elk~ 637 (727)
T KOG0103|consen 622 DQTKAVYVAKLEELKK 637 (727)
T ss_pred ccchHHHHHHHHHHHh
Confidence 8999999999999974
No 19
>KOG0104|consensus
Probab=100.00 E-value=1e-41 Score=365.71 Aligned_cols=374 Identities=32% Similarity=0.486 Sum_probs=313.0
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhccc--chhhhHHHHHHHHHHHHHHHHHhccCCceeEEEecccCCeee
Q psy4003 15 LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKK--DILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDF 92 (535)
Q Consensus 15 ~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~ 92 (535)
.+++++++.|..|||..|.++|.+|+.+.|.+.++. ++..++|++.+|.++|+++|..||++..+.++|+.+.+++|+
T Consensus 248 ~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDF 327 (902)
T KOG0104|consen 248 QIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDF 327 (902)
T ss_pred eEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhcccc
Confidence 789999999999999999999999999999988874 577889999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHHHHHH
Q psy4003 93 YSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELC 172 (535)
Q Consensus 93 ~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (535)
..++||++||++|+|+..|+..+|+++|..++++.+
T Consensus 328 r~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ld-------------------------------------------- 363 (902)
T KOG0104|consen 328 RLKVTREEFEELCADLEERIVEPINDALKKAQLSLD-------------------------------------------- 363 (902)
T ss_pred ccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChh--------------------------------------------
Confidence 999999999999999999999999999999988877
Q ss_pred HHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhCCCcc
Q psy4003 173 MDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSS 252 (535)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~~~~~ 252 (535)
+|+.|+|+||+||+|.||+.|.++.+..++..++|+|||++.||+++||.|+. +|
T Consensus 364 -----------------------eIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk--sF 418 (902)
T KOG0104|consen 364 -----------------------EINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK--SF 418 (902)
T ss_pred -----------------------hhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc--cc
Confidence 99999999999999999999999998899999999999999999999999999 99
Q ss_pred cccceeeeecccCcceeEeeCC--------EEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCc
Q psy4003 253 AIQDVLLVDVAPLSLGIETAGG--------VMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQ 324 (535)
Q Consensus 253 ~~~~~~~~d~~~~~~gi~~~~~--------~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
+++++.+.|.++|++-++.... ....+|.+|.++|.....+|+...+++|..+..
T Consensus 419 KvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~----------------- 481 (902)
T KOG0104|consen 419 KVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINY----------------- 481 (902)
T ss_pred cccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccch-----------------
Confidence 9999999999999987765432 223489999999999888887764443321110
Q ss_pred cccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCC-
Q psy4003 325 LRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPA- 403 (535)
Q Consensus 325 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~- 403 (535)
.+- + ..+-++.+.|+..+
T Consensus 482 -------------------------------------------~~~---------~---------~nl~~velsgV~d~~ 500 (902)
T KOG0104|consen 482 -------------------------------------------GDL---------G---------QNLTTVELSGVKDAL 500 (902)
T ss_pred -------------------------------------------hhh---------c---------cCccEEEEecchHHH
Confidence 000 0 01113344443321
Q ss_pred ---CC---CCCeEEEEEEeCCCceEEEEEeec---------------------CC-----------------------Cc
Q psy4003 404 ---PR---GVPKIEVTFDLDANGILNVSAKDS---------------------ST-----------------------GK 433 (535)
Q Consensus 404 ---~~---g~~~I~v~f~id~nGil~v~~~~~---------------------~t-----------------------~k 433 (535)
+. ....|.++|.+|..|++.|+..+. ++ ++
T Consensus 501 kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e 580 (902)
T KOG0104|consen 501 KKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSE 580 (902)
T ss_pred HhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccCccc
Confidence 11 123588999999999999865420 00 00
Q ss_pred --c------------------------------------eeEEEecC---CCCCCHHHHHHHHHHHHHHHhhchHHHHHH
Q psy4003 434 --A------------------------------------ERITIQND---KGRLSKDDIDRMLAEAEKYKAEDDKQRERV 472 (535)
Q Consensus 434 --~------------------------------------~~i~i~~~---~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~ 472 (535)
+ ..+.|... ...|++..+....++++.+..+|+...+++
T Consensus 581 ~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re 660 (902)
T KOG0104|consen 581 RSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSERE 660 (902)
T ss_pred cccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHH
Confidence 0 01333332 236899999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHccC-CccCHHHHHHHHHHhhC
Q psy4003 473 AAKNKLESYAFAVKQAAEDSG--SKLSDADKTSVSQACSATLTWLEGN-SLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 473 ~akN~LEs~Iy~~r~~Le~~~--~~~t~~ek~~i~~~l~e~~~WL~~~-~~~~~~~~~~~l~~L~~ 535 (535)
+|-|+||.++|++...+++++ ++.+++|+..|...+....+||+++ ....+++|++++++|++
T Consensus 661 ~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~ 726 (902)
T KOG0104|consen 661 EASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKK 726 (902)
T ss_pred HHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 999999999999999999876 8999999999999999999999987 67899999999999974
No 20
>PRK11678 putative chaperone; Provisional
Probab=99.90 E-value=1.3e-22 Score=218.59 Aligned_cols=170 Identities=24% Similarity=0.287 Sum_probs=137.5
Q ss_pred ceEEEEEEEeCC------CeEEEEEeCCCCCCchHHHHHHHH-HHHHHHHhh----hcccc-------------------
Q psy4003 2 RTNGSVLAIDEG------SLFQVKSTAGDTHLGGEDFDNRLV-TFFADEFKR----KHKKD------------------- 51 (535)
Q Consensus 2 T~DvSvv~~~~~------~~~~vl~~~g~~~lGG~dfD~~l~-~~~~~~~~~----~~~~~------------------- 51 (535)
|||+||+++.++ ...+|++++|. +|||+|||.+|+ +++...|+. +.+.+
T Consensus 220 T~D~Svv~~~~~~~~~~~r~~~vla~~G~-~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~ 298 (450)
T PRK11678 220 TTDCSMLLMGPSWRGRADRSASLLGHSGQ-RIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQS 298 (450)
T ss_pred eEEEEEEEecCcccccCCcceeEEecCCC-CCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccchhh
Confidence 899999999744 14799999995 899999999998 677776641 11110
Q ss_pred -------------h---hhhHHHH------------HHHHHHHHHHHHHhccCCceeEEEecccCCeeeEEEeCHHHHHH
Q psy4003 52 -------------I---LANTRAV------------RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEE 103 (535)
Q Consensus 52 -------------~---~~~~~~~------------~~L~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~~~~ltr~~fe~ 103 (535)
+ ..+++.+ .+|+.+||++|+.||.+.++++.++.+. .++..+|||++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~ItR~efe~ 376 (450)
T PRK11678 299 DFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLATEISQQGLEE 376 (450)
T ss_pred hhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcceeeCHHHHHH
Confidence 0 0122222 3688999999999999999999887654 34789999999999
Q ss_pred HhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHHHHHHHHHHHhhhhHH
Q psy4003 104 LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELCMDLFRQTLAPV 183 (535)
Q Consensus 104 l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (535)
+++++++++..+++++|+++++
T Consensus 377 ii~~~l~ri~~~i~~~L~~a~~---------------------------------------------------------- 398 (450)
T PRK11678 377 AISQPLARILELVQLALDQAQV---------------------------------------------------------- 398 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC----------------------------------------------------------
Confidence 9999999999999999998876
Q ss_pred HHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 184 ERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 184 ~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
.++.|+||||+|+||.|++.|++.||+.+ ....+|.++||.|+|++|..
T Consensus 399 ------------~~d~VvLvGGsSriP~V~~~l~~~fg~~~-v~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 399 ------------KPDVIYLTGGSARSPLIRAALAQQLPGIP-IVGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred ------------CCCEEEEcCcccchHHHHHHHHHHCCCCc-EEeCCCcchHHHHHHHHHHh
Confidence 34589999999999999999999996544 45679999999999999864
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.74 E-value=4.2e-17 Score=170.09 Aligned_cols=160 Identities=18% Similarity=0.291 Sum_probs=124.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCC----
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST---- 77 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~---- 77 (535)
|||+|++..+.- .+.++..+||+|||..|++++.++|....+ ...||++|+.++...
T Consensus 158 ttdvsvv~~g~~------~~~~~~~lGG~did~~i~~~l~~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~ 218 (336)
T PRK13928 158 TTDIAVLSLGGI------VTSSSIKVAGDKFDEAIIRYIRKKYKLLIG-------------ERTAEEIKIKIGTAFPGAR 218 (336)
T ss_pred eEEEEEEEeCCE------EEeCCcCCHHHHHHHHHHHHHHHHhchhcC-------------HHHHHHHHHHhcccccccC
Confidence 789999887532 244678999999999999999977643221 257899999987542
Q ss_pred ceeEEEe--cccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcc
Q psy4003 78 EASLEID--ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLI 155 (535)
Q Consensus 78 ~~~i~i~--~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~ 155 (535)
...+.+. .+..+.+..++++|++|++++.+.++++...++++++.++....
T Consensus 219 ~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~--------------------------- 271 (336)
T PRK13928 219 EEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELS--------------------------- 271 (336)
T ss_pred CcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc---------------------------
Confidence 1233332 22345667899999999999999999999999999998753211
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcc-eEEEecCccccHHHHHHHHHhhCCCccCCCCCchhh
Q psy4003 156 FRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEA 234 (535)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~dea 234 (535)
...++ .|+|+||+|+||.|++.|++.| +.++....||++|
T Consensus 272 --------------------------------------~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~a 312 (336)
T PRK13928 272 --------------------------------------ADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISC 312 (336)
T ss_pred --------------------------------------HhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHH
Confidence 11677 7999999999999999999999 6777888899999
Q ss_pred HHhhHHHHHHHH
Q psy4003 235 VAYGAAVQAAIL 246 (535)
Q Consensus 235 Va~GAa~~a~~l 246 (535)
||+|||+++..+
T Consensus 313 va~Gaa~~~~~~ 324 (336)
T PRK13928 313 VALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHhch
Confidence 999999998764
No 22
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.66 E-value=1.6e-15 Score=157.88 Aligned_cols=159 Identities=18% Similarity=0.302 Sum_probs=120.8
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCc---
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE--- 78 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~--- 78 (535)
|||+++++.++. ...+..++||++||..|++++.+++..... ...||++|+.++....
T Consensus 159 ttdvs~v~~~~~------~~~~~~~lGG~~id~~l~~~l~~~~~~~~~-------------~~~ae~iK~~~~~~~~~~~ 219 (334)
T PRK13927 159 TTEVAVISLGGI------VYSKSVRVGGDKFDEAIINYVRRNYNLLIG-------------ERTAERIKIEIGSAYPGDE 219 (334)
T ss_pred eEEEEEEecCCe------EeeCCcCChHHHHHHHHHHHHHHHhCcCcC-------------HHHHHHHHHHhhccCCCCC
Confidence 677777766533 234567899999999999999876632211 2468999999985432
Q ss_pred -eeEEEe--cccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcc
Q psy4003 79 -ASLEID--ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLI 155 (535)
Q Consensus 79 -~~i~i~--~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~ 155 (535)
..+.+. .+..+.+..++++|++|++++.+.+.++...+.+++++++....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~--------------------------- 272 (334)
T PRK13927 220 VLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELA--------------------------- 272 (334)
T ss_pred CceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhh---------------------------
Confidence 223332 23345667889999999999999999999999999988753211
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcc-eEEEecCccccHHHHHHHHHhhCCCccCCCCCchhh
Q psy4003 156 FRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEA 234 (535)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~dea 234 (535)
...++ .|+|+||+|++|.++++|++.| +.++....||+++
T Consensus 273 --------------------------------------~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~a 313 (334)
T PRK13927 273 --------------------------------------ADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTC 313 (334)
T ss_pred --------------------------------------hhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHH
Confidence 00234 5999999999999999999999 5778888899999
Q ss_pred HHhhHHHHHHH
Q psy4003 235 VAYGAAVQAAI 245 (535)
Q Consensus 235 Va~GAa~~a~~ 245 (535)
||.|||+++..
T Consensus 314 va~Ga~~~~~~ 324 (334)
T PRK13927 314 VARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
No 23
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.61 E-value=1.4e-14 Score=151.23 Aligned_cols=157 Identities=17% Similarity=0.301 Sum_probs=120.5
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCC----
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST---- 77 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~---- 77 (535)
|+|++++..++- ...++..+||++||..|++++.+++....+ ...||++|+.|+...
T Consensus 161 tt~v~vi~~~~~------~~~~~~~~GG~~id~~l~~~l~~~~~~~~~-------------~~~AE~iK~~l~~~~~~~~ 221 (335)
T PRK13929 161 TTEVAIISFGGV------VSCHSIRIGGDQLDEDIVSFVRKKYNLLIG-------------ERTAEQVKMEIGYALIEHE 221 (335)
T ss_pred eEEEEEEEeCCE------EEecCcCCHHHHHHHHHHHHHHHHhCcCcC-------------HHHHHHHHHHHcCCCCCCC
Confidence 788888875432 234567899999999999999876532211 257999999998632
Q ss_pred ceeEEEe--cccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcc
Q psy4003 78 EASLEID--ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLI 155 (535)
Q Consensus 78 ~~~i~i~--~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~ 155 (535)
...+.+. .+..+.+..+++++++|++++.+.+.++...+++.|++++....
T Consensus 222 ~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~--------------------------- 274 (335)
T PRK13929 222 PETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELS--------------------------- 274 (335)
T ss_pred CceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc---------------------------
Confidence 2223332 12345567899999999999999999999999999988754321
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcc-eEEEecCccccHHHHHHHHHhhCCCccCCCCCchhh
Q psy4003 156 FRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEA 234 (535)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~dea 234 (535)
...++ .|+|+||+|++|.+++++++.| +.++....||+++
T Consensus 275 --------------------------------------~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~ 315 (335)
T PRK13929 275 --------------------------------------GDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLES 315 (335)
T ss_pred --------------------------------------hhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHH
Confidence 01566 6999999999999999999999 6777888899999
Q ss_pred HHhhHHHHH
Q psy4003 235 VAYGAAVQA 243 (535)
Q Consensus 235 Va~GAa~~a 243 (535)
||+||+..-
T Consensus 316 Va~Ga~~~~ 324 (335)
T PRK13929 316 VAIGTGRSL 324 (335)
T ss_pred HHHHHHHHH
Confidence 999999763
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.60 E-value=1.8e-14 Score=150.21 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=118.5
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCc---
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE--- 78 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~--- 78 (535)
|||+|+++.++- ...++..+||+|||+.|++++.+++..... +..||++|+.|+....
T Consensus 161 ttdvs~v~~~~~------~~~~~~~lGG~did~~l~~~l~~~~~~~~~-------------~~~ae~lK~~l~~~~~~~~ 221 (333)
T TIGR00904 161 TTEVAVISLGGI------VVSRSIRVGGDEFDEAIINYIRRTYNLLIG-------------EQTAERIKIEIGSAYPLND 221 (333)
T ss_pred eEEEEEEEeCCE------EecCCccchHHHHHHHHHHHHHHHhcccCC-------------HHHHHHHHHHHhccccccc
Confidence 678888876533 234567899999999999999876532111 3578999999976422
Q ss_pred --eeEEEec--ccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCc
Q psy4003 79 --ASLEIDA--LHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPL 154 (535)
Q Consensus 79 --~~i~i~~--~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~ 154 (535)
..+.+.. ...+.+..+.+++++|.+++.+.+.++...+.+.++.++....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~-------------------------- 275 (333)
T TIGR00904 222 EPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELA-------------------------- 275 (333)
T ss_pred cccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh--------------------------
Confidence 1222211 1123345678999999999999999999999999888653211
Q ss_pred ccccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCc-c-eEEEecCccccHHHHHHHHHhhCCCccCCCCCch
Q psy4003 155 IFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSI-H-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 232 (535)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i-~-~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~d 232 (535)
.++ + .|+|+||+|+||.++++|++.| +.++....||+
T Consensus 276 ----------------------------------------~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~ 314 (333)
T TIGR00904 276 ----------------------------------------ADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPL 314 (333)
T ss_pred ----------------------------------------hhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChH
Confidence 033 3 6999999999999999999999 67888889999
Q ss_pred hhHHhhHHHHHHH
Q psy4003 233 EAVAYGAAVQAAI 245 (535)
Q Consensus 233 eaVa~GAa~~a~~ 245 (535)
++||.||++++..
T Consensus 315 ~~va~Ga~~~~~~ 327 (333)
T TIGR00904 315 LCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998643
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.58 E-value=3.2e-14 Score=148.03 Aligned_cols=159 Identities=19% Similarity=0.294 Sum_probs=118.2
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCc---
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE--- 78 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~--- 78 (535)
|||++++..+.- ...+...+||.+||+.|++++.+++.. ... ...||++|+.|+....
T Consensus 163 ttdvs~v~~g~~------~~~~~~~lGG~~id~~l~~~l~~~~~~----~~~---------~~~ae~~K~~~~~~~~~~~ 223 (335)
T PRK13930 163 TTEVAVISLGGI------VYSESIRVAGDEMDEAIVQYVRRKYNL----LIG---------ERTAEEIKIEIGSAYPLDE 223 (335)
T ss_pred eEEEEEEEeCCE------EeecCcCchhHHHHHHHHHHHHHHhCC----CCC---------HHHHHHHHHHhhcCcCCCC
Confidence 567777655422 234567999999999999999876532 111 2478999999986432
Q ss_pred -eeEEEe--cccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcc
Q psy4003 79 -ASLEID--ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLI 155 (535)
Q Consensus 79 -~~i~i~--~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~ 155 (535)
..+.+. ....+.+..+.+++++|++++.+.++++...+.++++.+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~--------------------------- 276 (335)
T PRK13930 224 EESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELA--------------------------- 276 (335)
T ss_pred CceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHh---------------------------
Confidence 123332 22234556889999999999999999999999999887642210
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcce-EEEecCccccHHHHHHHHHhhCCCccCCCCCchhh
Q psy4003 156 FRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHD-VVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEA 234 (535)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~dea 234 (535)
...++. |+|+||+|++|.++++|++.| +.++....||+++
T Consensus 277 --------------------------------------~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~a 317 (335)
T PRK13930 277 --------------------------------------ADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTC 317 (335)
T ss_pred --------------------------------------hHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHH
Confidence 003454 999999999999999999999 5777778899999
Q ss_pred HHhhHHHHHHH
Q psy4003 235 VAYGAAVQAAI 245 (535)
Q Consensus 235 Va~GAa~~a~~ 245 (535)
||.|||+.+..
T Consensus 318 va~Ga~~~~~~ 328 (335)
T PRK13930 318 VARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHhC
Confidence 99999999754
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.35 E-value=3.6e-12 Score=131.93 Aligned_cols=158 Identities=20% Similarity=0.363 Sum_probs=118.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCc---
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE--- 78 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~--- 78 (535)
|+|++|+.+++ ++.+. ....||++||++|.+|+.++|.-..+ ...||++|+.++....
T Consensus 156 tTdiavislgg-----iv~s~-si~~gG~~~DeaI~~~ir~~y~l~Ig-------------~~tAE~iK~~~g~~~~~~~ 216 (326)
T PF06723_consen 156 TTDIAVISLGG-----IVASR-SIRIGGDDIDEAIIRYIREKYNLLIG-------------ERTAEKIKIEIGSASPPEE 216 (326)
T ss_dssp -EEEEEEETTE-----EEEEE-EES-SHHHHHHHHHHHHHHHHSEE---------------HHHHHHHHHHH-BSS--HH
T ss_pred eEEEEEEECCC-----EEEEE-EEEecCcchhHHHHHHHHHhhCcccC-------------HHHHHHHHHhcceeeccCC
Confidence 78888885432 12222 24789999999999999998853332 3468999999875432
Q ss_pred -eeEEE--ecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcc
Q psy4003 79 -ASLEI--DALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLI 155 (535)
Q Consensus 79 -~~i~i--~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~ 155 (535)
..+.+ ..+..|.+..+.++.+++.+++.+.+.++...++++|++. ||++
T Consensus 217 ~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~----------------------------pPel 268 (326)
T PF06723_consen 217 EESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKT----------------------------PPEL 268 (326)
T ss_dssp HHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-----------------------------HHH
T ss_pred CceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------------CHHH
Confidence 23333 3456788899999999999999999999999999999875 6666
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhH
Q psy4003 156 FRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAV 235 (535)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaV 235 (535)
..|+ --++|+|+||+++++-+.+.|++.+ +-++...-||..||
T Consensus 269 ~~DI------------------------------------~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~v 311 (326)
T PF06723_consen 269 AADI------------------------------------LENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAV 311 (326)
T ss_dssp HHHH------------------------------------HHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHH
T ss_pred HHHH------------------------------------HHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHH
Confidence 5554 2247999999999999999999999 78999999999999
Q ss_pred HhhHHHHH
Q psy4003 236 AYGAAVQA 243 (535)
Q Consensus 236 a~GAa~~a 243 (535)
|.||....
T Consensus 312 a~G~~~~l 319 (326)
T PF06723_consen 312 ARGAGKLL 319 (326)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99999764
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.28 E-value=1.5e-11 Score=122.63 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=92.8
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|+|++|++ .| . ++. .++..+||++||+.|++++. .+ ..+||++|+.++.
T Consensus 119 tt~i~i~~--~G-~--i~~-~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~~~------ 167 (239)
T TIGR02529 119 TTGISILK--KG-K--VIY-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGHKD------ 167 (239)
T ss_pred cEEEEEEE--CC-e--EEE-EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcCC------
Confidence 67888864 34 2 223 34668999999998875542 21 2578899987541
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.+++.+++.+.++++...+++.+++.
T Consensus 168 ----------------~~~~~~~i~~~~~~i~~~i~~~l~~~-------------------------------------- 193 (239)
T TIGR02529 168 ----------------EEEIFPVVKPVYQKMASIVKRHIEGQ-------------------------------------- 193 (239)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------------------
Confidence 34566788888888888888877643
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
.++.|+|+||+|+||.+++.+++.| +.++..+.||++++|.|||+
T Consensus 194 ----------------------------------~~~~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 194 ----------------------------------GVKDLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred ----------------------------------CCCEEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeehhheeec
Confidence 5668999999999999999999999 67888899999999999986
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.28 E-value=2.5e-11 Score=122.92 Aligned_cols=122 Identities=20% Similarity=0.295 Sum_probs=95.0
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|+|++++. +| . ++.+ ++..+||++||+.|++++. .+ ..+||++|+.++
T Consensus 146 tt~i~v~~--~g-~--~~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~~~------- 193 (267)
T PRK15080 146 TTGISILK--DG-K--VVYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRDPK------- 193 (267)
T ss_pred cEEEEEEE--CC-e--EEEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhccC-------
Confidence 56666643 33 2 2223 4679999999999997752 11 356788888753
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
+++++.+++.+.++++...+++.++..
T Consensus 194 ---------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-------------------------------------- 220 (267)
T PRK15080 194 ---------------HHKEIFPVVKPVVEKMASIVARHIEGQ-------------------------------------- 220 (267)
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------------------
Confidence 246788888888888888888877643
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+++.|+|+||+|++|.+++.+++.| +.++....||+.++|+|||+
T Consensus 221 ----------------------------------~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~ 265 (267)
T PRK15080 221 ----------------------------------DVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIAL 265 (267)
T ss_pred ----------------------------------CCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHh
Confidence 6779999999999999999999999 67888889999999999998
Q ss_pred HH
Q psy4003 242 QA 243 (535)
Q Consensus 242 ~a 243 (535)
++
T Consensus 266 ~~ 267 (267)
T PRK15080 266 SC 267 (267)
T ss_pred hC
Confidence 74
No 29
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.19 E-value=8.8e-11 Score=124.28 Aligned_cols=145 Identities=17% Similarity=0.295 Sum_probs=105.0
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccC-----
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----- 76 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~----- 76 (535)
|+|++++. +| .. .......+||++||..|+..+. ....+||++|+.++..
T Consensus 207 tt~i~i~~--~g-~~---~~~~~i~~GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~ 261 (371)
T TIGR01174 207 TTDIAVYT--GG-SI---RYTKVIPIGGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLE 261 (371)
T ss_pred cEEEEEEE--CC-EE---EEEeeecchHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCC
Confidence 67777764 33 21 1223457999999998876431 1246799999999863
Q ss_pred -CceeEEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHH-HHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCc
Q psy4003 77 -TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVE-RALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPL 154 (535)
Q Consensus 77 -~~~~i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~-~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~ 154 (535)
....+.+.... .+....++|++|++++.+.++++...++ +.+++++.. +
T Consensus 262 ~~~~~i~~~~~~--~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~-------------------------- 312 (371)
T TIGR01174 262 GPDENIEIPSVG--ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-E-------------------------- 312 (371)
T ss_pred CCCCEEEeccCC--CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--------------------------
Confidence 23455665432 3567899999999999999999999997 999887664 3
Q ss_pred ccccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcce-EEEecCccccHHHHHHHHHhhCCCccCCC-----
Q psy4003 155 IFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHD-VVLVGGSIRIPKIQKMLQDFFNGKSLNLS----- 228 (535)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-V~LvGGssriP~v~~~l~~~f~~~~~~~~----- 228 (535)
+++. |+|+||+|+||.+++.+++.|+ .++...
T Consensus 313 -----------------------------------------~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~ 350 (371)
T TIGR01174 313 -----------------------------------------ELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNI 350 (371)
T ss_pred -----------------------------------------cCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCcc
Confidence 6666 9999999999999999999994 333221
Q ss_pred -------CCchhhHHhhHHHH
Q psy4003 229 -------INPDEAVAYGAAVQ 242 (535)
Q Consensus 229 -------~~~deaVa~GAa~~ 242 (535)
-+|..++|.|.++|
T Consensus 351 ~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 351 GGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred CCchhhcCCcHHHHHHHHHhC
Confidence 15777888887753
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.96 E-value=6.4e-09 Score=112.01 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=105.1
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccC-----
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----- 76 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~----- 76 (535)
|||+||+. +| .+ .....-.+||++|++.|+..+. . -...||++|+.....
T Consensus 215 tTdisv~~--~G-~l---~~~~~i~~GG~~it~dIa~~l~--------i-----------~~~~AE~lK~~~g~~~~~~~ 269 (420)
T PRK09472 215 TMDIAVYT--GG-AL---RHTKVIPYAGNVVTSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIV 269 (420)
T ss_pred ceEEEEEE--CC-EE---EEEeeeechHHHHHHHHHHHhC--------c-----------CHHHHHHHHHhcceeccccC
Confidence 56666664 33 11 2233457899999988875541 1 135789999764321
Q ss_pred -CceeEEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcc
Q psy4003 77 -TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLI 155 (535)
Q Consensus 77 -~~~~i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~ 155 (535)
.+..+.+....++ ....++|.+|.+++.+-++.+...+++.
T Consensus 270 ~~~~~i~v~~~~~~--~~~~i~~~~l~~ii~~r~~ei~~~i~~~------------------------------------ 311 (420)
T PRK09472 270 GKDESVEVPSVGGR--PPRSLQRQTLAEVIEPRYTELLNLVNEE------------------------------------ 311 (420)
T ss_pred CCCceeEecCCCCC--CCeEEcHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 2345666543322 2358899999999988666666555443
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCC--------
Q psy4003 156 FRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL-------- 227 (535)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~-------- 227 (535)
+.++...+.++++....++.|+|+||+++||.+++.+++.|+ .++..
T Consensus 312 ------------------------l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g 366 (420)
T PRK09472 312 ------------------------ILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITG 366 (420)
T ss_pred ------------------------HHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCC
Confidence 334455566666666689999999999999999999999994 33332
Q ss_pred ----CCCchhhHHhhHHHHHH
Q psy4003 228 ----SINPDEAVAYGAAVQAA 244 (535)
Q Consensus 228 ----~~~~deaVa~GAa~~a~ 244 (535)
..+|..|+|.|.++++.
T Consensus 367 ~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 367 LTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred ChhhcCCcHHHHHHHHHHHhh
Confidence 24799999999999975
No 31
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.90 E-value=1.2e-08 Score=103.36 Aligned_cols=161 Identities=17% Similarity=0.318 Sum_probs=126.7
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccC-----
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----- 76 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~----- 76 (535)
|+|++|+.+.+= -++....+||+.||.+|..|+.++|+-..+. +.||++|+.....
T Consensus 164 TTevaVISlggi------v~~~Sirv~GD~~De~Ii~yvr~~~nl~IGe-------------~taE~iK~eiG~a~~~~~ 224 (342)
T COG1077 164 TTEVAVISLGGI------VSSSSVRVGGDKMDEAIIVYVRKKYNLLIGE-------------RTAEKIKIEIGSAYPEEE 224 (342)
T ss_pred ceeEEEEEecCE------EEEeeEEEecchhhHHHHHHHHHHhCeeecH-------------HHHHHHHHHhcccccccC
Confidence 678888777644 2333458999999999999999988654441 2377788876432
Q ss_pred ---CceeEEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCC
Q psy4003 77 ---TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPP 153 (535)
Q Consensus 77 ---~~~~i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~ 153 (535)
.+..+.-.++..|.+..++++..++.+..++.+++++..++.+|+.. ||
T Consensus 225 ~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~t----------------------------pP 276 (342)
T COG1077 225 DEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKT----------------------------PP 276 (342)
T ss_pred CccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhC----------------------------Cc
Confidence 22445555666788889999999999999999999999999999875 66
Q ss_pred cccccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcc-eEEEecCccccHHHHHHHHHhhCCCccCCCCCch
Q psy4003 154 LIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 232 (535)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~d 232 (535)
+++.|+ ++ .++|+||++.+--+.+.|.+.- +-.+....+|-
T Consensus 277 eL~~DI-------------------------------------~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL 318 (342)
T COG1077 277 ELAADI-------------------------------------VERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPL 318 (342)
T ss_pred hhcccH-------------------------------------hhCceEEecchHHhcCchHhHHhcc-CCeEEECCChH
Confidence 666654 33 4999999999999999999998 67888889999
Q ss_pred hhHHhhHHHHHHHHh
Q psy4003 233 EAVAYGAAVQAAILS 247 (535)
Q Consensus 233 eaVa~GAa~~a~~l~ 247 (535)
+|||+|+......+.
T Consensus 319 ~~Va~G~G~~le~~~ 333 (342)
T COG1077 319 TCVAKGTGKALEALD 333 (342)
T ss_pred HHHHhccchhhhhhH
Confidence 999999998876554
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.90 E-value=9.1e-05 Score=79.30 Aligned_cols=151 Identities=23% Similarity=0.367 Sum_probs=109.4
Q ss_pred EEEEEEeCCCeEEEE-------EeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccC-
Q psy4003 5 GSVLAIDEGSLFQVK-------STAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS- 76 (535)
Q Consensus 5 vSvv~~~~~~~~~vl-------~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~- 76 (535)
|+++.+++| .-++- .+.+.-.+||+.+...|+..|.-- ...||+.|+.....
T Consensus 205 v~lIDiG~G-TTdIai~~~G~l~~~~~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~ 264 (418)
T COG0849 205 VALIDIGGG-TTDIAIYKNGALRYTGVIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSAL 264 (418)
T ss_pred eEEEEeCCC-cEEEEEEECCEEEEEeeEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccc
Confidence 566666666 44432 333456899999999998765422 24677777776432
Q ss_pred -----CceeEEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcC
Q psy4003 77 -----TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQI 151 (535)
Q Consensus 77 -----~~~~i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~ 151 (535)
....+.++.. |.+....++|.++.+++++-+..+..+++..|++++.+..
T Consensus 265 ~~~~~~~~~i~v~~v--g~~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~----------------------- 319 (418)
T COG0849 265 ISLADDEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNH----------------------- 319 (418)
T ss_pred cCcCCCcceEecccC--CCcccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCcccc-----------------------
Confidence 2344666544 3334788999999999999999999999999999887533
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCC----
Q psy4003 152 PPLIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL---- 227 (535)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~---- 227 (535)
-...|+|+||++.||-+.+..++.|+ ..++.
T Consensus 320 --------------------------------------------~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~ 354 (418)
T COG0849 320 --------------------------------------------LPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPL 354 (418)
T ss_pred --------------------------------------------CCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCc
Confidence 46689999999999999999999994 43332
Q ss_pred --------CCCchhhHHhhHHHHHHH
Q psy4003 228 --------SINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 228 --------~~~~deaVa~GAa~~a~~ 245 (535)
..+|.-+.|.|..+++..
T Consensus 355 ~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 355 NIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred cccCchhhccCchhhhhHHHHHHHhh
Confidence 234778888898888764
No 33
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.41 E-value=0.0015 Score=68.65 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=42.2
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
+++.|+|+||++++ +++.|++.|+. +...-||..|-|+|...+|..+.+
T Consensus 291 ~~d~IiL~GGGA~l--l~~~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 291 SFDRVIVTGGGANI--FFDSLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CCCEEEEECCcHHH--HHHHHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 78899999999987 78999999963 356679999999999999876654
No 34
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=96.72 E-value=0.013 Score=61.38 Aligned_cols=46 Identities=33% Similarity=0.534 Sum_probs=32.4
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccC---------CCC----------CchhhHHhhHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN---------LSI----------NPDEAVAYGAAVQ 242 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~---------~~~----------~~deaVa~GAa~~ 242 (535)
.|+.|+|+||++++|-+.+.|.+.|+ .++. ... .|..++|.|.|+.
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l~-~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR 338 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEELG-IPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALR 338 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHHT-SEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCccchhhHHHHHHHHHC-CceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhc
Confidence 68899999999999999999999884 3221 111 2567888888875
No 35
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.58 E-value=0.013 Score=58.80 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=40.3
Q ss_pred cc-eEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 197 IH-DVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 197 i~-~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
++ .|+|.||.++.|.+.+.+.+.+ +.++..+.+|..+.|+|||+
T Consensus 203 ~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 203 IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 44 7999999999999999999999 68888888999999999997
No 36
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=96.49 E-value=0.0065 Score=64.28 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=39.5
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCC---------ccCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGK---------SLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~---------~~~~~~~~deaVa~GAa~~a~~ 245 (535)
-++.|+|+||+|++|-+.++|++.+... .+....+|..++-+||+++|..
T Consensus 289 l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 289 LYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 3668999999999999999998887421 2234567889999999999843
No 37
>KOG0100|consensus
Probab=96.36 E-value=0.0031 Score=66.01 Aligned_cols=74 Identities=32% Similarity=0.565 Sum_probs=47.8
Q ss_pred eCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh-hhhHHHHHHHHHH
Q psy4003 96 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS-KITRARFEELCMD 174 (535)
Q Consensus 96 ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (535)
+.-+-|..-..|.- ++.. ..-|++..++ .|+|||||||||.|||++. +||. +.+
T Consensus 337 lNmDLFr~TlkPv~-kvl~--Ds~lkKsdid-----eiVLVGGsTrIPKvQqllk-------~fF~GKep---------- 391 (663)
T KOG0100|consen 337 LNMDLFRKTLKPVQ-KVLE--DSDLKKSDID-----EIVLVGGSTRIPKVQQLLK-------DFFNGKEP---------- 391 (663)
T ss_pred hhhHHHHHhhHHHH-HHHh--hcCcccccCc-----eEEEecCcccChhHHHHHH-------HHhCCCCc----------
Confidence 33444554444433 3222 2456677666 7999999999999999994 4442 221
Q ss_pred HHHhhhhHHHH----HhhhcccCCCC
Q psy4003 175 LFRQTLAPVER----ALNDAKLDKGS 196 (535)
Q Consensus 175 ~~~~~~~~~~~----~l~~~~~~~~~ 196 (535)
.+.++|.+. |+-++|+..++
T Consensus 392 --skGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 392 --SKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred --cCCCChHHHHHhhhhhhhcccccc
Confidence 457788877 77788877764
No 38
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.21 E-value=0.014 Score=55.74 Aligned_cols=48 Identities=31% Similarity=0.506 Sum_probs=42.2
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
.++.|.++||.++.|.+.+++.+.| +.++... +..++.|.|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVL-GRPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHH-TSEEEEE-SSSTHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHh-CCceEeC-CCCchHHHHHHHHHHh
Confidence 4899999999999999999999999 6776655 4499999999999874
No 39
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.13 E-value=0.021 Score=58.51 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=40.9
Q ss_pred ceEEEecCccccHHHHHHHHHhhCCCccC-CCCCchhhHHhhHHHHHHH
Q psy4003 198 HDVVLVGGSIRIPKIQKMLQDFFNGKSLN-LSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 198 ~~V~LvGGssriP~v~~~l~~~f~~~~~~-~~~~~deaVa~GAa~~a~~ 245 (535)
+.|+|.||.++.|.+++.+++.+ +.++. .+.+|..+-|+|||++|.-
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999999 56665 5678999999999999853
No 40
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=95.80 E-value=0.0096 Score=62.99 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=34.0
Q ss_pred cceEEEecCccccHHHHHHHHHhhCCC-------ccCCCCCchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNGK-------SLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~~-------~~~~~~~~deaVa~GAa~~a~ 244 (535)
.+.|+|+||+|++|-+.++|.+.+... .+....++..++=.||+++|.
T Consensus 292 ~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 292 YENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred HhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 356999999999999999998776211 222334556777778887764
No 41
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.72 E-value=0.036 Score=56.03 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=38.0
Q ss_pred eEEEecCccccHHHHHHHHHhhCCCc----cCCCCCchhhHHhhHHHHH
Q psy4003 199 DVVLVGGSIRIPKIQKMLQDFFNGKS----LNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 199 ~V~LvGGssriP~v~~~l~~~f~~~~----~~~~~~~deaVa~GAa~~a 243 (535)
.|+|.||.++.+.+.+.|++.+++.+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999995443 4445678899999999864
No 42
>PRK15027 xylulokinase; Provisional
Probab=95.56 E-value=0.043 Score=60.39 Aligned_cols=52 Identities=33% Similarity=0.422 Sum_probs=45.4
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||+++.+...+++.+.| +.++....+.+++.++|||+.|+.-.|
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 4678999999999999999999999 677866667777899999999987666
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.53 E-value=0.12 Score=54.04 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=21.9
Q ss_pred CcceEEEecCccccHHHHHHHHHhhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
.++.|+|+||++++|-+.+.+++.|+
T Consensus 282 ~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 282 SLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred ccceEEEECccccchhHHHHHHHHHC
Confidence 57788888888888888888888884
No 44
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.12 E-value=0.062 Score=57.07 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=40.7
Q ss_pred ceEEEecCccccHHHHHHHHHhhC----CCccCCCCCchhhHHhhHHHHH
Q psy4003 198 HDVVLVGGSIRIPKIQKMLQDFFN----GKSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 198 ~~V~LvGGssriP~v~~~l~~~f~----~~~~~~~~~~deaVa~GAa~~a 243 (535)
+.|+|+||.++.+.+.+.|++.++ +.++..+.+|..+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 479999999999999999999994 4567778899999999999875
No 45
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=95.11 E-value=0.051 Score=58.00 Aligned_cols=46 Identities=33% Similarity=0.403 Sum_probs=42.4
Q ss_pred ceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHH
Q psy4003 198 HDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 198 ~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.|+|+||.++.+.+.+.+++.+ +.++..+.+|..+.|.|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 34999999999999999999999 67888899999999999999984
No 46
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.015 Score=65.39 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=65.9
Q ss_pred EeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHHHHHHHH
Q psy4003 95 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELCMD 174 (535)
Q Consensus 95 ~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (535)
.+..+.|.++..+.-. .+.+..++.+.++ .|+||||++|||+||+.++ +++..
T Consensus 283 ~l~~dll~r~~~~~~~---al~~a~l~~~~I~-----~VilvGGstriP~V~~~v~-------------------~~f~~ 335 (579)
T COG0443 283 ELILDLLERTIEPVEQ---ALKDAGLEKSDID-----LVILVGGSTRIPAVQELVK-------------------EFFGK 335 (579)
T ss_pred HHHHHHHHHHHHHHHH---HHHHcCCChhhCc-----eEEEccceeccHHHHHHHH-------------------HHhCc
Confidence 3455556666555442 2223445555555 7899999999999999885 11113
Q ss_pred HHHhhhhHHHH----HhhhcccCCCC------cceEEEecCccccHHHHHHHHHhhC
Q psy4003 175 LFRQTLAPVER----ALNDAKLDKGS------IHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 175 ~~~~~~~~~~~----~l~~~~~~~~~------i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
-+.+.++|.+. |+.++++..+. +|.+-+.+|...+|.+...+.....
T Consensus 336 ~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~~~~~~~~ii~rn~ 392 (579)
T COG0443 336 EPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNT 392 (579)
T ss_pred cccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeeccccccCcchhhhHHhcCC
Confidence 33445555554 66777765554 4788899999999988777776663
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=94.86 E-value=0.34 Score=50.36 Aligned_cols=46 Identities=26% Similarity=0.311 Sum_probs=37.6
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a 243 (535)
+++.|+|+||++. ++++.|++.|+...+....||..|-|+|-..++
T Consensus 273 ~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 273 SIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred cccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 6889999999887 568999999976555556789999999987664
No 48
>PLN02669 xylulokinase
Probab=94.78 E-value=0.077 Score=59.51 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 168 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
++.+.+.+.-..+..++... . ...++.|+++||.|+.|.+.+++.+.| +.++... +..++.|+|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~----~-~~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~-~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFG----M-PVPPKRIIATGGASANQSILKLIASIF-GCDVYTV-QRPDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHh----C-CCCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEec-CCCCchHHHHHHHHHH
Confidence 34444444444444444442 1 236889999999999999999999999 5666544 4557899999999975
No 49
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=94.67 E-value=0.088 Score=58.82 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=43.5
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|...+++.+.| +.++.+. +..|+.++|||+.|+.-.|
T Consensus 443 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~alGaA~lA~~~~G 493 (541)
T TIGR01315 443 TIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIP-YVNEAVLHGAAMLGAKAAG 493 (541)
T ss_pred CccEEEEecCcccCHHHHHHHHHHH-CCeeEec-ChhHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999 6777665 4456889999999987665
No 50
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=94.25 E-value=0.16 Score=54.06 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=36.6
Q ss_pred cceEEEecCccccHHHHHHHHHhhCC-------CccCCCC-CchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNG-------KSLNLSI-NPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~-------~~~~~~~-~~deaVa~GAa~~a~ 244 (535)
...|+|+||+|++|-+.++|.+.+.. .++.... ++..++=.||+++|.
T Consensus 311 ~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilas 366 (393)
T PF00022_consen 311 LSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILAS 366 (393)
T ss_dssp HTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHT
T ss_pred ccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeec
Confidence 46899999999999999999877632 1223334 788999999999984
No 51
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=94.22 E-value=0.18 Score=55.13 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=43.1
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|...+++.+.| +.++...- ..++.++|||+.|+.-.|
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~-~~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANML-DIPVKVVD-DAETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhc-CCeeEecc-CCcchHHHHHHHHHHhcC
Confidence 4678999999999999999999999 67775554 457889999999987665
No 52
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=94.20 E-value=0.2 Score=54.81 Aligned_cols=51 Identities=35% Similarity=0.631 Sum_probs=44.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.+.+.+++.+.| +.++... ...++.+.|||+.|+.-.|
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcC
Confidence 5789999999999999999999999 6777554 5677999999999987665
No 53
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=94.10 E-value=0.17 Score=56.45 Aligned_cols=59 Identities=27% Similarity=0.503 Sum_probs=47.3
Q ss_pred HHhhhcccCCCCcceEEEecCc-cccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 185 RALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 185 ~~l~~~~~~~~~i~~V~LvGGs-sriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
+++.+.|. .++.|.++||. ++.+...+++.+.| +.++....+ .|+.|.|||+.|+.-.|
T Consensus 427 ~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 427 ETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 33344443 57899999999 99999999999999 677766554 46889999999987766
No 54
>PTZ00280 Actin-related protein 3; Provisional
Probab=94.08 E-value=0.21 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.8
Q ss_pred cceEEEecCccccHHHHHHHHHhhC
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
.+.|+|+||+|.+|-+.++|++.+.
T Consensus 313 ~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 313 YKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred hhcEEEeCCcccCcCHHHHHHHHHH
Confidence 4579999999999999999988873
No 55
>PRK00047 glpK glycerol kinase; Provisional
Probab=94.04 E-value=0.15 Score=56.39 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=43.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|...+++.+.| +.++... ...|+.|+|||+.|+.-.|
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAVG 453 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhcC
Confidence 4788999999999999999999999 6777544 4567899999999987665
No 56
>PRK04123 ribulokinase; Provisional
Probab=94.01 E-value=0.17 Score=56.66 Aligned_cols=59 Identities=24% Similarity=0.509 Sum_probs=46.9
Q ss_pred HHhhhcccCCCCcceEEEecCc-cccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 185 RALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 185 ~~l~~~~~~~~~i~~V~LvGGs-sriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
+++.+.+. .++.|.++||. ++.++..+++.+.| +.++.+. ...|+.|+|||+.|+.-.|
T Consensus 430 e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 430 ECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 34444443 47889999999 99999999999999 6777544 4567899999999987665
No 57
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=93.98 E-value=0.19 Score=52.93 Aligned_cols=44 Identities=27% Similarity=0.368 Sum_probs=42.3
Q ss_pred EEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHH
Q psy4003 200 VVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 200 V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~ 244 (535)
|+|+||.+..-.|.+++.+.+ +.++.++.+|.-.-|.|||++|.
T Consensus 346 iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHh
Confidence 999999999999999999999 79999999999999999999984
No 58
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=93.91 E-value=0.18 Score=55.60 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=43.9
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.+...+++.+.| +.++.. .+..|+.|+|||+.|+.-.|
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~-~~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVR-PKVTETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEe-cCCCcchHHHHHHHHHhhcC
Confidence 4789999999999999999999999 677765 45568889999999987665
No 59
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=93.89 E-value=0.17 Score=55.97 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=43.6
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.+...+++.+.| +.++... ...|+.|+|||+.|+.-.|
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~-~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVP-EMAETTALGAALLAGLAVG 456 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHh-CCceEec-CcccchHHHHHHHHHhhcC
Confidence 3789999999999999999999999 6777555 4666899999999987665
No 60
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=93.49 E-value=0.031 Score=63.85 Aligned_cols=47 Identities=30% Similarity=0.455 Sum_probs=29.9
Q ss_pred EeCHHHHHHHhhHHHHHhHHHHHHH-HHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 95 KITRARFEELCMDLFRQTLAPVERA-LNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 95 ~ltr~~fe~l~~~~~~~~~~~i~~~-l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
.+.+.-++++..++ . ..++++ +....++ .|+|||||||||.||++++
T Consensus 327 ~l~~~l~~r~~~~v-~---~~L~~a~~~~~dId-----~VvLVGGssriP~V~~~l~ 374 (657)
T PTZ00186 327 GITQRLIERSIAPC-K---QCMKDAGVELKEIN-----DVVLVGGMTRMPKVVEEVK 374 (657)
T ss_pred HHHHHHHHHHHHHH-H---HHHHHcCCChhhCC-----EEEEECCcccChHHHHHHH
Confidence 45555566555433 2 233322 3333343 6999999999999999995
No 61
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=93.47 E-value=0.22 Score=55.14 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=43.8
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.+...+++.+.| +.++...- ..|+.+.|||+.|+.-.|
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~-~~e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPE-SYESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecC-CCCcchHHHHHHHHHhcC
Confidence 5889999999999999999999999 67776554 446889999999987665
No 62
>PRK10331 L-fuculokinase; Provisional
Probab=93.42 E-value=0.27 Score=53.87 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=43.4
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|...+++.+.| +.++... ...|++++|||+.|+.-.|
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~-~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIKVL-DDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeEec-CcccchHHHHHHHHHHhcC
Confidence 4778999999999999999999999 6777555 4557889999999987665
No 63
>PLN02295 glycerol kinase
Probab=93.30 E-value=0.24 Score=54.88 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=43.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|...+++.+.| +.++... +..|+.|+|||+.|+.-.|
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHHHHhhcC
Confidence 4788999999999999999999999 6777544 5568899999999987665
No 64
>PRK13317 pantothenate kinase; Provisional
Probab=93.08 E-value=0.28 Score=50.19 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=42.2
Q ss_pred CcceEEEec-CccccHHHHHHHHHhhC--CCccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVG-GSIRIPKIQKMLQDFFN--GKSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvG-GssriP~v~~~l~~~f~--~~~~~~~~~~deaVa~GAa~~a~ 244 (535)
.++.|+++| |-++.|.+++.+.+... +.++..+.||..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 557899999 79999999999998873 46677788999999999999874
No 65
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=92.93 E-value=0.37 Score=52.56 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=43.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||+++.++..+++.+.+ +.++... +.|+.|.|||+.|+.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999 6777533 367999999999987666
No 66
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=92.62 E-value=0.43 Score=52.39 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=42.8
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.++..+++.+.+ +.++... . .++.++|||+.|+.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC-C-hhHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999 6777543 3 47999999999987766
No 67
>KOG2531|consensus
Probab=92.53 E-value=0.38 Score=51.64 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=49.0
Q ss_pred HHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 184 ERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 184 ~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.....-|.....-..|++|||.||-..|-+.|.+.| +..+. .++..+++|.|+|+.|+.
T Consensus 430 r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy-~~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 430 RARAEPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVY-TIEGPNSAALGGAYRAAY 489 (545)
T ss_pred hhhhccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeE-eecCCchhhHHHHHHHHH
Confidence 3344455667778999999999999999999999999 56554 448899999999999764
No 68
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=92.18 E-value=0.41 Score=53.19 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=43.6
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.+...+++.+.| +.++.+.. ..++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPV-VKEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEec-ccCchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 67776554 446889999999987665
No 69
>PRK13410 molecular chaperone DnaK; Provisional
Probab=92.08 E-value=0.06 Score=61.67 Aligned_cols=19 Identities=53% Similarity=1.025 Sum_probs=17.8
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||+||||+|+++++
T Consensus 331 ~VvLVGGssRiP~V~~~l~ 349 (668)
T PRK13410 331 EVVLVGGSTRMPMVQQLVR 349 (668)
T ss_pred EEEEECCccccHHHHHHHH
Confidence 7999999999999999884
No 70
>KOG0102|consensus
Probab=92.04 E-value=0.035 Score=60.46 Aligned_cols=54 Identities=31% Similarity=0.591 Sum_probs=40.0
Q ss_pred ceeeeccccchhhhhhhhcCCCcccccchhhhhHHHHHHHHHHHHHhhhhHHHH----HhhhcccCCCCcceEEEec
Q psy4003 132 DVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELCMDLFRQTLAPVER----ALNDAKLDKGSIHDVVLVG 204 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~i~~V~LvG 204 (535)
+|.||||++|||.||..++ +.|.+-+ ....+|.+. |..+.|+..++|..|+|.-
T Consensus 356 EV~lvggmtrmpkv~s~V~-------e~fgk~p------------~~~vnPdeava~GAaiqggvl~geVkdvlLLd 413 (640)
T KOG0102|consen 356 EVILVGGMTRMPKVQSTVK-------ELFGKGP------------SKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLD 413 (640)
T ss_pred hhhhhcchhhcHHHHHHHH-------HHhCCCC------------CCCcCCcchhccchhhccchhhccccceeeee
Confidence 6899999999999999885 2332222 455677766 6667788888998888863
No 71
>KOG2517|consensus
Probab=91.83 E-value=0.52 Score=51.90 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 170 ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
..++.+--+++..++..-.+.+ ..|..+.+-||.|+-|++-+.+.+++ |.++.++.++|. |+.|||+.|+..++
T Consensus 391 A~leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 391 AALEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcC
Confidence 3445555566777777766665 46777999999999999999999999 688888888877 99999999998887
No 72
>KOG0101|consensus
Probab=91.63 E-value=0.11 Score=58.03 Aligned_cols=19 Identities=74% Similarity=1.204 Sum_probs=18.0
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+|||||+|||.+|++++
T Consensus 337 ~vvlVGGstriPk~~~ll~ 355 (620)
T KOG0101|consen 337 EVVLVGGSTRIPKVQKLLE 355 (620)
T ss_pred eeEEecCcccchHHHHHHH
Confidence 6999999999999999995
No 73
>PLN03184 chloroplast Hsp70; Provisional
Probab=91.14 E-value=0.1 Score=59.91 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHc
Q psy4003 471 RVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLE 516 (535)
Q Consensus 471 ~~~akN~LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~ 516 (535)
..+-+++|+..+..++.+|+++......+..+.+.+.|....+=+|
T Consensus 590 ~~eer~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 590 PADVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLY 635 (673)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555788888999999999765422233344455555555554444
No 74
>CHL00094 dnaK heat shock protein 70
Probab=90.75 E-value=0.11 Score=59.03 Aligned_cols=19 Identities=63% Similarity=1.080 Sum_probs=17.9
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++|||.|+++++
T Consensus 331 ~ViLvGGssriP~v~~~l~ 349 (621)
T CHL00094 331 EVVLVGGSTRIPAIQELVK 349 (621)
T ss_pred EEEEECCccCChHHHHHHH
Confidence 7999999999999999885
No 75
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=90.71 E-value=0.12 Score=58.39 Aligned_cols=19 Identities=53% Similarity=1.059 Sum_probs=17.9
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++|||.|+++++
T Consensus 327 ~V~LvGGssriP~v~~~i~ 345 (595)
T TIGR02350 327 EVILVGGSTRIPAVQELVK 345 (595)
T ss_pred EEEEECCcccChHHHHHHH
Confidence 7999999999999999885
No 76
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=90.57 E-value=1.2 Score=49.28 Aligned_cols=51 Identities=33% Similarity=0.412 Sum_probs=38.6
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||++|.++..+++.+.| +.++... ...|+.+.|+|+.++.-.+
T Consensus 401 ~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~-~~~e~~a~g~A~~~~~~~~ 451 (502)
T COG1070 401 PPSRVRVVGGGARSPLWLQILADAL-GLPVVVP-EVEEAGALGGAALAAAALG 451 (502)
T ss_pred CccEEEEECCcccCHHHHHHHHHHc-CCeeEec-CcccchHHHHHHHHHHHhC
Confidence 5668999999999999999999999 6777644 4456666666666555443
No 77
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=90.53 E-value=0.25 Score=55.87 Aligned_cols=19 Identities=53% Similarity=0.845 Sum_probs=17.9
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||+||||+||++++
T Consensus 311 ~ViLvGGssriP~v~~~l~ 329 (595)
T PRK01433 311 GVILVGGATRIPLIKDELY 329 (595)
T ss_pred EEEEECCcccChhHHHHHH
Confidence 7999999999999999985
No 78
>KOG0681|consensus
Probab=90.52 E-value=0.35 Score=52.90 Aligned_cols=136 Identities=16% Similarity=0.214 Sum_probs=90.4
Q ss_pred HHHHHHhhHHHHHhHHHHHHHHHHCC-CCCCCccceeeeccccchhhh-hh---------hhcCCCcccccchhhhhHHH
Q psy4003 99 ARFEELCMDLFRQTLAPVERALNDAK-LDKGSIHDVVLVGGSIRIPKI-QK---------MLQIPPLIFRDFYSKITRAR 167 (535)
Q Consensus 99 ~~fe~l~~~~~~~~~~~i~~~l~~a~-~~~~~~~~i~lvGGs~riP~v-q~---------~~~~~~~~~~~~~~~~~~~~ 167 (535)
+++++.....+..+..+-..+++-.. .... +.-..-+-++-.|.+ .. .|-+|+-++.+-+..+.+..
T Consensus 461 e~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~--~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaG 538 (645)
T KOG0681|consen 461 EDLEEENKSILEDLKSLNHELLEFDPHFTQY--VEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAG 538 (645)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHhhCcccccc--cccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhh
Confidence 55666566566666666555554211 1111 011122334445555 22 34467777888888888888
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCC-------CccCCCCCchhhHHhhHH
Q psy4003 168 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAA 240 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~-------~~~~~~~~~deaVa~GAa 240 (535)
+-++..-++.+...-....| +..|+|+||.|.+|-+.+.|...|-. ..+.++.||-..+=+||+
T Consensus 539 l~Ei~~~il~r~p~~eq~~l---------V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~ 609 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKL---------VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGAS 609 (645)
T ss_pred HHHHHHHHHHhCchhhhHhh---------hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhH
Confidence 88888888877755444442 78999999999999999999876532 244567899999999999
Q ss_pred HHHHH
Q psy4003 241 VQAAI 245 (535)
Q Consensus 241 ~~a~~ 245 (535)
.+|+.
T Consensus 610 ~~a~n 614 (645)
T KOG0681|consen 610 AWAAN 614 (645)
T ss_pred HhhcC
Confidence 99874
No 79
>PTZ00281 actin; Provisional
Probab=90.21 E-value=0.75 Score=48.97 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=34.7
Q ss_pred cceEEEecCccccHHHHHHHHHhhCCC-------ccCCCCCchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNGK-------SLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~~-------~~~~~~~~deaVa~GAa~~a~ 244 (535)
.+.|+|+||+|.+|-+.++|+..+... ++..+.++..++=+||+++|.
T Consensus 295 ~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 295 YGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 457999999999999999887666311 223334556788888888874
No 80
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=90.17 E-value=0.13 Score=58.51 Aligned_cols=19 Identities=47% Similarity=1.032 Sum_probs=17.9
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++|||+|+++++
T Consensus 329 ~ViLvGGssriP~v~~~l~ 347 (627)
T PRK00290 329 EVILVGGSTRMPAVQELVK 347 (627)
T ss_pred EEEEECCcCCChHHHHHHH
Confidence 7999999999999999884
No 81
>PTZ00466 actin-like protein; Provisional
Probab=89.64 E-value=1.8 Score=46.29 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=34.4
Q ss_pred cceEEEecCccccHHHHHHHHHhhCCC-------ccCCCCCchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNGK-------SLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~~-------~~~~~~~~deaVa~GAa~~a~ 244 (535)
...|+|+||+|.+|-+.++|+..+... ++....++..++=+||+++|.
T Consensus 299 ~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 299 YSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred hhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 568999999999999999998776321 122233555677778888774
No 82
>PTZ00004 actin-2; Provisional
Probab=88.76 E-value=1.2 Score=47.54 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=33.9
Q ss_pred cceEEEecCccccHHHHHHHHHhhCC-------CccCCCCCchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~-------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
...|+|+||+|.+|-+.++|+..+.. .++....++..++=+||++.|.
T Consensus 297 ~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 297 YGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 45799999999999999998876621 1222334566777778887763
No 83
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=88.24 E-value=4.1 Score=45.02 Aligned_cols=51 Identities=29% Similarity=0.501 Sum_probs=44.3
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.|+.+++.||-.+-|++.+.+.+.- +..+... ..+++++.|+|+.|+.-.|
T Consensus 431 ~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 431 AIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred eeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 6889999999999999999999999 5555544 7889999999999987665
No 84
>PTZ00452 actin; Provisional
Probab=87.71 E-value=2.7 Score=44.78 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=33.8
Q ss_pred cceEEEecCccccHHHHHHHHHhhCCC-------ccCCCCCchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNGK-------SLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~~-------~~~~~~~~deaVa~GAa~~a~ 244 (535)
...|+|+||+|.+|-+.++|+..+... ++..+.++..++=+|++++|.
T Consensus 294 ~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 294 CRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred hccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 568999999999999999988766211 122233445677778888774
No 85
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=86.47 E-value=0.3 Score=55.55 Aligned_cols=19 Identities=42% Similarity=0.872 Sum_probs=17.8
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++|||+|+++++
T Consensus 331 ~ViLvGGssriP~v~~~l~ 349 (616)
T PRK05183 331 EVVMVGGSTRVPLVREAVG 349 (616)
T ss_pred EEEEECCcccChHHHHHHH
Confidence 7999999999999999884
No 86
>KOG0104|consensus
Probab=85.72 E-value=0.66 Score=52.63 Aligned_cols=45 Identities=42% Similarity=0.662 Sum_probs=37.2
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEe
Q psy4003 156 FRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV 203 (535)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~Lv 203 (535)
..||-.++||+.||++|+++..+...|+++||..|++ .++.|-.|
T Consensus 324 diDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l---~ldeIn~V 368 (902)
T KOG0104|consen 324 DIDFRLKVTREEFEELCADLEERIVEPINDALKKAQL---SLDEINQV 368 (902)
T ss_pred ccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCC---Chhhhhee
Confidence 3466789999999999999999999999999999882 55554433
No 87
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=83.51 E-value=5.8 Score=46.97 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=35.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC-------------------CccCCCCCchhhHHhhHHHHHHHHh
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG-------------------KSLNLSINPDEAVAYGAAVQAAILS 247 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~-------------------~~~~~~~~~deaVa~GAa~~a~~l~ 247 (535)
+.|.++|+|-.||+|-||..+++..+- .+..+--||-..||.||.+++....
T Consensus 766 ~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 766 DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 455667777777777777777666531 2223556899999999999976554
No 88
>PLN02377 3-ketoacyl-CoA synthase
Probab=82.94 E-value=5.6 Score=44.14 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=74.2
Q ss_pred eEEEeCHHHHHHHhh---HHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHH
Q psy4003 92 FYSKITRARFEELCM---DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARF 168 (535)
Q Consensus 92 ~~~~ltr~~fe~l~~---~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~ 168 (535)
-+.+++++.|-+... .+-++..+..++.++++|+..+ |-+| |-++. .++...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ri~~~sgig~~-----------t~~p---------~~~~~----~~~~~~~ 165 (502)
T PLN02377 110 DHLKAPFARFMEHSRLTGDFDDSSLEFQRKILERSGLGED-----------TYVP---------EAMHY----IPPRPSM 165 (502)
T ss_pred ccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCCc-----------cccC---------chhcc----CCccchH
Confidence 457889998887766 3446778889999999998533 3333 32221 1222345
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEe-cCccccHHHHHHHHHhhC
Q psy4003 169 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV-GGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~Lv-GGssriP~v~~~l~~~f~ 221 (535)
+...++-..-....+++||+++|+++.|||.++.. .|....|-.-.+|.+.+|
T Consensus 166 ~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 166 AAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 55555555556677889999999999999998762 333357999999999995
No 89
>PRK11678 putative chaperone; Provisional
Probab=82.63 E-value=0.6 Score=51.04 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=17.6
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++|||.|+++++
T Consensus 402 ~VvLvGGsSriP~V~~~l~ 420 (450)
T PRK11678 402 VIYLTGGSARSPLIRAALA 420 (450)
T ss_pred EEEEcCcccchHHHHHHHH
Confidence 4899999999999999886
No 90
>PLN03173 chalcone synthase; Provisional
Probab=81.56 E-value=13 Score=39.90 Aligned_cols=109 Identities=10% Similarity=0.164 Sum_probs=72.8
Q ss_pred EEeCHHHHHHHhhHHHH-----HhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCc---ccccchh--hh
Q psy4003 94 SKITRARFEELCMDLFR-----QTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPL---IFRDFYS--KI 163 (535)
Q Consensus 94 ~~ltr~~fe~l~~~~~~-----~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~---~~~~~~~--~~ 163 (535)
..++++++.+.....+. .....+.+..+.++++.. ++-+|++ ++..+.. .+
T Consensus 29 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R-------------------~~~~~~~~~~~~~~~~~~~~p 89 (391)
T PLN03173 29 NCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKR-------------------YMHLTEEILKENPSVCEYMAP 89 (391)
T ss_pred cccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCee-------------------eEeccchhhhhCcccccccCC
Confidence 56788889888877662 233346677778888654 2223322 1211221 11
Q ss_pred h-HHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCcc-ccHHHHHHHHHhhC
Q psy4003 164 T-RARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 221 (535)
Q Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGss-riP~v~~~l~~~f~ 221 (535)
+ .++.+-+.+.-..-...-+++||.++|+.+.|||.|+.+..+. ..|-+--.|.+.+|
T Consensus 90 ~~~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 90 SLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 2 4455555555566677788999999999999999998887544 58999999999984
No 91
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=81.34 E-value=5.3 Score=43.64 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=39.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC-------CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~-------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
-+..|+|+||+|.+|-+-.+|.+.+.. ..+..+.+|..++=+||+++|.
T Consensus 362 l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 362 LYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred HhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 577899999999999999998877632 2334456788999999999885
No 92
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=79.64 E-value=5.6 Score=41.34 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=40.1
Q ss_pred HHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC--CCccCCCCCchhhHHhhHH
Q psy4003 172 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSINPDEAVAYGAA 240 (535)
Q Consensus 172 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~--~~~~~~~~~~deaVa~GAa 240 (535)
++....+..+-+.+.+.+ ..+++.|+||||++ .++.+.|++.|+ ...+...-||..|-|+|-+
T Consensus 252 i~~~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 252 IEEAVEELINRILRELGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHHHHHTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 333333444444444432 34789999999976 567899999985 2456677799999999854
No 93
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=79.46 E-value=6.6 Score=39.54 Aligned_cols=44 Identities=34% Similarity=0.517 Sum_probs=33.5
Q ss_pred EEEecCccccHHHHHHHHHhh----CCCccCCCCCchhhHHhhHHHHH
Q psy4003 200 VVLVGGSIRIPKIQKMLQDFF----NGKSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 200 V~LvGGssriP~v~~~l~~~f----~~~~~~~~~~~deaVa~GAa~~a 243 (535)
|+|.||..+.+.+++.+++.+ ...++....+|....|.|||++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 999999999977776664443 23334456789999999999986
No 94
>PLN03168 chalcone synthase; Provisional
Probab=79.39 E-value=14 Score=39.56 Aligned_cols=109 Identities=10% Similarity=0.199 Sum_probs=75.0
Q ss_pred EEeCHHHHHHHhhHHHH-----HhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcC---CCcccccch--hhh
Q psy4003 94 SKITRARFEELCMDLFR-----QTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQI---PPLIFRDFY--SKI 163 (535)
Q Consensus 94 ~~ltr~~fe~l~~~~~~-----~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~---~~~~~~~~~--~~~ 163 (535)
..++++++.+....+++ .....+.++.+.++++.. ++-+ |+.++.++. ..+
T Consensus 28 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R-------------------~~~~~~~~~~~~~~~~~~~~p 88 (389)
T PLN03168 28 AEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKR-------------------HMFLTEEVLKANPGICTYMEP 88 (389)
T ss_pred cccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCee-------------------eeeccccchhhCcccccccCC
Confidence 46788888888776652 233446677788888654 2222 223333322 112
Q ss_pred -hHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCc-cccHHHHHHHHHhhC
Q psy4003 164 -TRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFN 221 (535)
Q Consensus 164 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGs-sriP~v~~~l~~~f~ 221 (535)
..++.+-+.+.-......-+++||.++|+.+.|||.|+++-.+ -.+|-+--.|.+.+|
T Consensus 89 s~~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 89 SLNVRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 2566677777777777888899999999999999999877533 358999999999994
No 95
>PLN03172 chalcone synthase family protein; Provisional
Probab=78.46 E-value=18 Score=38.85 Aligned_cols=109 Identities=11% Similarity=0.179 Sum_probs=74.2
Q ss_pred EEeCHHHHHHHhhHHHH-----HhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCC---Ccccccchh--h-
Q psy4003 94 SKITRARFEELCMDLFR-----QTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIP---PLIFRDFYS--K- 162 (535)
Q Consensus 94 ~~ltr~~fe~l~~~~~~-----~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~---~~~~~~~~~--~- 162 (535)
..++.+++.+....+++ .+...+.+..+.+|++.. ++-++ ..++.++.. .
T Consensus 29 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R-------------------~~~~~~~~~~~~~~~~~~~~p 89 (393)
T PLN03172 29 NCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKR-------------------YMHLTEEILKENPNMCAYMAP 89 (393)
T ss_pred ccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCce-------------------eEeccchhhhhCccccccCCC
Confidence 56888888888776552 233336667778888654 22222 122222221 1
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCcc-ccHHHHHHHHHhhC
Q psy4003 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 221 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGss-riP~v~~~l~~~f~ 221 (535)
-..++.+.+.+.-..-...-+++||.++|+.+.+||.|+++..+. .+|-+--.|.+.+|
T Consensus 90 ~~~~r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 90 SLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 125566666666667777888999999999999999998877555 69999999999994
No 96
>PLN03170 chalcone synthase; Provisional
Probab=78.43 E-value=16 Score=39.29 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=74.9
Q ss_pred EEeCHHHHHHHhhHHH-----HHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh--hh-hH
Q psy4003 94 SKITRARFEELCMDLF-----RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS--KI-TR 165 (535)
Q Consensus 94 ~~ltr~~fe~l~~~~~-----~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~--~~-~~ 165 (535)
..++.+++.+....++ .+....+.++.+.+|++.. +.++.-+ |..++.++.. .+ ..
T Consensus 33 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R---~~~~~~~-------------~~~~~~~~~~~~~p~~~ 96 (401)
T PLN03170 33 NCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKR---YMHLTEE-------------YLAENPNMCAYMAPSLD 96 (401)
T ss_pred ccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCce---eEecccc-------------chhhCccccccCCCCHH
Confidence 4678888888877655 2234446777788888754 1111110 1122222221 11 25
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCcc-ccHHHHHHHHHhhC
Q psy4003 166 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI-RIPKIQKMLQDFFN 221 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGss-riP~v~~~l~~~f~ 221 (535)
++.+.+.+.-......-+++||.++|+.+.||+.|+++-.+. .+|-+--.|.+.+|
T Consensus 97 ~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 97 ARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 566666666677788889999999999999999998877544 69999999999994
No 97
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=78.28 E-value=2.5 Score=44.09 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCcc-ceeeeccccchhhhhhhhc
Q psy4003 99 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIH-DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 99 ~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~-~i~lvGGs~riP~vq~~~~ 150 (535)
+.++..+..+++.+...++.+-.+...+. ++ +|+||||+++||.++++++
T Consensus 246 eii~~~~~~i~~~i~~~l~~~~~~~~~~~--i~~~IvL~GG~s~ipgi~e~l~ 296 (336)
T PRK13928 246 EALKEPVSAIVQAVKSVLERTPPELSADI--IDRGIIMTGGGALLHGLDKLLA 296 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccHhh--cCCCEEEECcccchhhHHHHHH
Confidence 44555555666666666655521111111 12 5999999999999988764
No 98
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=76.99 E-value=12 Score=38.52 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=72.3
Q ss_pred eEEEeCHHHHHHHhh---HHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHH
Q psy4003 92 FYSKITRARFEELCM---DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARF 168 (535)
Q Consensus 92 ~~~~ltr~~fe~l~~---~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~ 168 (535)
-+..++++.|.+... .+-++..+.++++++++|+..+ |-.| ..++..||. ..+
T Consensus 21 ~~~~v~~~~~~e~~~~~~~f~~~sl~F~~kIlerSGlG~e-----------Ty~P--~~~~~~p~~-----------~s~ 76 (290)
T PF08392_consen 21 DELRVSREEFIEHARRCGRFDEESLDFQRKILERSGLGDE-----------TYLP--PALHEIPPD-----------PSL 76 (290)
T ss_pred cccccCHHHHHHHHHhcccCChhHHHHHHHHHHhcCCCcc-----------ccCC--cccccCCCc-----------ccH
Confidence 356889998887655 3456778999999999998654 2233 122233333 222
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEe-cCccccHHHHHHHHHhhC
Q psy4003 169 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV-GGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~Lv-GGssriP~v~~~l~~~f~ 221 (535)
+...++--.-....++++|+++|+.+.|||.++.. ....-.|-+-.+|.+.|+
T Consensus 77 ~~a~~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 77 AAAREEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 22222222334567889999999999999986543 456788999999999994
No 99
>PLN02192 3-ketoacyl-CoA synthase
Probab=75.99 E-value=11 Score=42.03 Aligned_cols=105 Identities=15% Similarity=0.240 Sum_probs=71.6
Q ss_pred eEEEeCHHHHHHHhh---HHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHH
Q psy4003 92 FYSKITRARFEELCM---DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARF 168 (535)
Q Consensus 92 ~~~~ltr~~fe~l~~---~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~ 168 (535)
-+.+++++.|-+... .+-++..+...++++++|+..+ |-+|---. ..||. ..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sglg~~-----------t~~p~~~~--~~~~~-----------~~~ 169 (511)
T PLN02192 114 DSRKCTRKIFMDRSKLTGSFTEENLEFQRKILERSGLGES-----------TYLPEAVL--NVPPN-----------PCM 169 (511)
T ss_pred ccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCc-----------ccCChhhc--cCCCC-----------ccH
Confidence 456889999988766 3445678999999999998644 33332211 12222 233
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCcc--ccHHHHHHHHHhhC
Q psy4003 169 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI--RIPKIQKMLQDFFN 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGss--riP~v~~~l~~~f~ 221 (535)
+..-++--.-....+++||+++|+++.|||.|+.. .|. -.|-+-.+|.+.+|
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVN-CSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhC
Confidence 33334444444567789999999999999988765 333 47999999999994
No 100
>PLN02854 3-ketoacyl-CoA synthase
Probab=75.92 E-value=11 Score=42.09 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=70.7
Q ss_pred eEEEeCHHHHHHHhh---HHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHH
Q psy4003 92 FYSKITRARFEELCM---DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARF 168 (535)
Q Consensus 92 ~~~~ltr~~fe~l~~---~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~ 168 (535)
-+.+++++.|-+... .+-++..+...++++++|+..+ |-. ||-++ ..+++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sg~g~~-----------ty~---------P~~~~----~~~~~~~~ 181 (521)
T PLN02854 126 DERKISVDSFLTMTEENGSFEDETVQFQRRISTRSGLGDE-----------TYL---------PRGIT----SRPPNLCM 181 (521)
T ss_pred ccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCc-----------ccc---------Ccccc----CCCCcchH
Confidence 456889998887766 3446778999999999998644 222 22221 11222233
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEe-cCccccHHHHHHHHHhhC
Q psy4003 169 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV-GGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~Lv-GGssriP~v~~~l~~~f~ 221 (535)
+..-++--.=.+..++++|+++|+++.|||.+++. .+....|-.-.+|.+.+|
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 33333333444556788999999999999999862 233347999999999994
No 101
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=72.66 E-value=2.8 Score=48.04 Aligned_cols=34 Identities=62% Similarity=1.005 Sum_probs=30.3
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcc
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAK 191 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (535)
|+...+||++||++|++++.+++.+++++|.+++
T Consensus 294 d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~ 327 (653)
T PTZ00009 294 DYNVTISRARFEELCGDYFRNTLQPVEKVLKDAG 327 (653)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556889999999999999999999999988764
No 102
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=71.98 E-value=1.1e+02 Score=32.43 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=30.5
Q ss_pred HhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhh
Q psy4003 177 RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 220 (535)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f 220 (535)
.......+||+..-+.+ .++++||-+.--.+|+++++..
T Consensus 247 ~~L~~kt~rAl~~~~~~-----~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 247 DMLVEKTERALKHTGKK-----ELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred HHHHHHHHHHHHHhCCC-----EEEEeccHHHhHHHHHHHHHHH
Confidence 33444557777766644 6999999999999999999876
No 103
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=71.39 E-value=3.2 Score=47.77 Aligned_cols=34 Identities=38% Similarity=0.704 Sum_probs=30.8
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcc
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAK 191 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (535)
++...+||++||++|++++.+++.+++++|.+++
T Consensus 329 ~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~ 362 (663)
T PTZ00400 329 HLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAG 362 (663)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556889999999999999999999999999875
No 104
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=71.13 E-value=5 Score=41.71 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=17.2
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+|+||+++||.++++++
T Consensus 279 ~IvL~GG~s~ipgl~~~l~ 297 (334)
T PRK13927 279 GIVLTGGGALLRGLDKLLS 297 (334)
T ss_pred CEEEECchhhhhHHHHHHH
Confidence 5999999999999998775
No 105
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=71.07 E-value=4.3 Score=43.92 Aligned_cols=64 Identities=17% Similarity=0.339 Sum_probs=51.0
Q ss_pred EeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhh----hhcCCCcccccc
Q psy4003 95 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQK----MLQIPPLIFRDF 159 (535)
Q Consensus 95 ~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~----~~~~~~~~~~~~ 159 (535)
++-+..+++++ .++.+++..+...+.+++.....+++|+|+||+++||-+++ .|++|+.+..++
T Consensus 295 ~ii~~r~~ei~-~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~ 362 (420)
T PRK09472 295 EVIEPRYTELL-NLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPL 362 (420)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCc
Confidence 45666777775 57788888899999999988878899999999999998877 555777665543
No 106
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=70.98 E-value=7.5 Score=40.43 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=29.0
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccch--hhhhhhhc
Q psy4003 100 RFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRI--PKIQKMLQ 150 (535)
Q Consensus 100 ~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~ri--P~vq~~~~ 150 (535)
++.+++...++++...+.+.+.+ ..+++.|+||||.+.+ |+|.+++.
T Consensus 247 ~v~~~i~~~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA~ll~~~Ik~~~~ 295 (318)
T PF06406_consen 247 DVSEVIEEAVEELINRILRELGD----FSDIDRIFFVGGGAILLKDAIKEAFP 295 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----S-S-SEEEEESTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hccCCeEEEECCcHHHHHHHHHHhhC
Confidence 44444555555555555554433 3456799999999977 77777764
No 107
>KOG0103|consensus
Probab=70.95 E-value=3.8 Score=46.39 Aligned_cols=44 Identities=43% Similarity=0.634 Sum_probs=36.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEe
Q psy4003 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLV 203 (535)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~Lv 203 (535)
-|+...+.|++||++|+|++++...|+..+|.++++ ..+.|-+|
T Consensus 294 ~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l---~~edi~~V 337 (727)
T KOG0103|consen 294 KDVSSKIKREEFEELSAPLLERVEVPLLKALADAKL---KVEDIHAV 337 (727)
T ss_pred chhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcC---ccccceeE
Confidence 366778899999999999999999999999998663 55555554
No 108
>PRK13411 molecular chaperone DnaK; Provisional
Probab=70.38 E-value=3.4 Score=47.37 Aligned_cols=34 Identities=44% Similarity=0.694 Sum_probs=30.8
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcc
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAK 191 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (535)
++...+||++||++|++++.++..+++++|.+++
T Consensus 289 ~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~ 322 (653)
T PRK13411 289 HLEMELTRAKFEELTKDLVEATIEPMQQALKDAG 322 (653)
T ss_pred eEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556889999999999999999999999999886
No 109
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=70.29 E-value=16 Score=39.93 Aligned_cols=68 Identities=24% Similarity=0.257 Sum_probs=54.5
Q ss_pred HHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 176 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
-=++.+.++.--++.+. .+..+-+=||.++..++-+...+++ +.++.++ .-.|.-|+|||+.|+.-.|
T Consensus 385 ayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp-~~~EtTAlGaA~lAGla~G 452 (499)
T COG0554 385 AYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADIL-GVPVERP-VVLETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHh-CCeeecc-ccchhhHHHHHHHHhhhhC
Confidence 34566666666666665 5788888999999999999999999 6778776 4567899999999987776
No 110
>PRK00976 hypothetical protein; Provisional
Probab=70.17 E-value=22 Score=37.26 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=39.7
Q ss_pred CcceEEEecCccccH--HHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIP--KIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP--~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
|.+.|+|-||-++.+ .+.+.+++.+.. . ...-..+|.++|||+.|....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhC
Confidence 788999999999998 789999888833 2 3344569999999998876644
No 111
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=68.21 E-value=9.6 Score=38.99 Aligned_cols=61 Identities=31% Similarity=0.299 Sum_probs=40.4
Q ss_pred HHHHhhhcc--cCCCCcceEEEecCccccHHHHHHHHHhhCC-------CccCCCCCchhhHHhhHHHHH
Q psy4003 183 VERALNDAK--LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 183 ~~~~l~~~~--~~~~~i~~V~LvGGssriP~v~~~l~~~f~~-------~~~~~~~~~deaVa~GAa~~a 243 (535)
+-|||.+-. -+.-+|+.|+|||||+.=.=|-+++.+.+.. ..+.-..-|..|||.|.++..
T Consensus 260 a~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 260 ALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp HHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHhh
Confidence 345666543 2334899999999999866666777776632 244445679999999998754
No 112
>KOG2708|consensus
Probab=66.77 E-value=59 Score=32.45 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=43.3
Q ss_pred HHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCc-cCCCCCchhhHHhhHHHHHHH
Q psy4003 173 MDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKS-LNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~-~~~~~~~deaVa~GAa~~a~~ 245 (535)
+-+|......-+||.+-. .-+.|++|||...-..+|+++..+...+. ....-|-.-|+--|+-+.-+.
T Consensus 236 EtvFamLVEiTERAMAh~-----~s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MIA~aG 304 (336)
T KOG2708|consen 236 ETVFAMLVEITERAMAHC-----GSKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMIAQAG 304 (336)
T ss_pred HHHHHHHHHHHHHHHhhc-----CCCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHHHHhH
Confidence 334455555556665543 34589999999999999999988873221 112335556777777665443
No 113
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=64.38 E-value=5.3 Score=45.37 Aligned_cols=34 Identities=47% Similarity=0.638 Sum_probs=30.5
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcc
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAK 191 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (535)
++...+||++|+++|++++.++..+++++|.+++
T Consensus 274 ~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~ 307 (599)
T TIGR01991 274 DFKGKLTRDEFEALIQPLVQKTLSICRRALRDAG 307 (599)
T ss_pred EEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556889999999999999999999999998775
No 114
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=62.90 E-value=7.8 Score=40.54 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=17.3
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
+|+|+||+|+||-+.++++
T Consensus 281 gIvLtGG~s~lpgl~e~l~ 299 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLS 299 (335)
T ss_pred CEEEEchhhhhhhHHHHHH
Confidence 5999999999999998775
No 115
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=62.86 E-value=3.5 Score=42.77 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=17.5
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
+|+|+||+++||.++++++
T Consensus 283 ~IvL~GG~s~ipg~~~~l~ 301 (335)
T PRK13930 283 GIVLTGGGALLRGLDKLLS 301 (335)
T ss_pred CEEEECchhcchhHHHHHH
Confidence 4999999999999999885
No 116
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=62.73 E-value=3.7 Score=42.78 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=17.4
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+|+||+|+||.++++++
T Consensus 282 ~IvL~GGss~ipgl~e~l~ 300 (333)
T TIGR00904 282 GIVLTGGGALLRNLDKLLS 300 (333)
T ss_pred CEEEECcccchhhHHHHHH
Confidence 5999999999999999875
No 117
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=62.17 E-value=15 Score=35.81 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=36.2
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
-+..+.|+||++.-|-+.+..++.| +-.+..+..|...--+|-|+
T Consensus 226 ~i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 226 GITDLWLVGGACMQPGVEELFEKQL-ALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred CCcceEEecccccCccHHHHHHHHh-ccccccCCCcceechhhhhh
Confidence 4668999999999999999999999 67777776776555555553
No 118
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=61.09 E-value=20 Score=36.79 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhhHHHH-HhhhcccCCCCcceEEEecC-ccccHHHHHHHHHhhC--CCccCCCCCchhhHHhhHHH
Q psy4003 169 EELCMDLFRQTLAPVER-ALNDAKLDKGSIHDVVLVGG-SIRIPKIQKMLQDFFN--GKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~~V~LvGG-ssriP~v~~~l~~~f~--~~~~~~~~~~deaVa~GAa~ 241 (535)
|++...+++..-+-+-. |...|.. ..+..|+++|| -+..|.+++.+...+. ..+....-|+.-.+|.||++
T Consensus 204 eDiAaSLl~mV~~nIg~lA~~~a~~--~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 204 EDIAASLLGLIGNNIGQIAYLCALR--YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 55555666554443322 2212221 26889999999 6678999999987753 34555667888999999986
No 119
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=59.28 E-value=26 Score=37.31 Aligned_cols=47 Identities=34% Similarity=0.482 Sum_probs=31.1
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCC----CCCch--hhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL----SINPD--EAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~----~~~~d--eaVa~GAa~~a~ 244 (535)
+++.|++.||+.+-|.+-+.|++.+++..+.. .++++ ||++. |++|.
T Consensus 284 ~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~La~ 336 (364)
T PF03702_consen 284 QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWLAY 336 (364)
T ss_dssp T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHHHH
T ss_pred CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHHHH
Confidence 48899999999999999999999997644432 24455 65544 45554
No 120
>PLN00415 3-ketoacyl-CoA synthase
Probab=58.20 E-value=81 Score=34.78 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=67.0
Q ss_pred eEEEeCHHHHHHHhh---HHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHH
Q psy4003 92 FYSKITRARFEELCM---DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARF 168 (535)
Q Consensus 92 ~~~~ltr~~fe~l~~---~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~ 168 (535)
-+.+++++.|-+.+. .+-++..+...+.++++|+..+ |-.|... +..||.- .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~s~~F~~~i~~rSGlg~e-----------t~~p~~~--~~~~~~~-----------~~ 127 (466)
T PLN00415 72 DSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDD-----------TYSPRCM--LTSPPTP-----------SM 127 (466)
T ss_pred ccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCC-----------eeeCCcc--ccCCCCC-----------Ch
Confidence 457889998887766 3445678899999999998654 1111111 1112211 11
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCcc--ccHHHHHHHHHhhC
Q psy4003 169 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI--RIPKIQKMLQDFFN 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGss--riP~v~~~l~~~f~ 221 (535)
+.--++----..+.++++|.++|+++.+||.|+.. ++. ..|-+-.+|...+|
T Consensus 128 ~~~~~e~em~i~~A~~~aL~~aGi~p~dID~LIvs-~T~~~~~Pslaa~l~~~LG 181 (466)
T PLN00415 128 YEARHESELVIFGALNSLFKKTGIEPREVGIFIVN-CSLFNPNPSLSSMIVNRYK 181 (466)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-CcCCCCCchHHHHHHHHhC
Confidence 11112222223446778999999999999988855 343 47999999999994
No 121
>PLN02932 3-ketoacyl-CoA synthase
Probab=58.10 E-value=68 Score=35.49 Aligned_cols=106 Identities=11% Similarity=0.108 Sum_probs=74.0
Q ss_pred eEEEeCHHHHHHHhhHH-----H----HHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhh
Q psy4003 92 FYSKITRARFEELCMDL-----F----RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSK 162 (535)
Q Consensus 92 ~~~~ltr~~fe~l~~~~-----~----~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~ 162 (535)
-+.+++++.|-+.+.-. + +...+..+..++..|+.... -+ |+-+ +..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~rsGig~~t-----------~~---------p~~~----~~~ 135 (478)
T PLN02932 80 SHLKASIQTIMGHVRRVREAGAWKQESDYLMDFCEKILERSGLGQET-----------YI---------PEGL----QCL 135 (478)
T ss_pred ccccccHHHHHHHHHhhcccCCCCccchhHHHHHHHHHHHcCCCCce-----------ee---------cccc----ccC
Confidence 45788899888766422 3 34489999999999997551 11 2211 111
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecC-ccccHHHHHHHHHhhC
Q psy4003 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGG-SIRIPKIQKMLQDFFN 221 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGG-ssriP~v~~~l~~~f~ 221 (535)
+....++...++--.-...-+++||+++|+++.|||.|+++-. ..-.|-+-.+|.+.+|
T Consensus 136 ~~~~~~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lG 195 (478)
T PLN02932 136 PLQQNLAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFK 195 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhC
Confidence 2344566666666666677889999999999999999875542 2368999999999994
No 122
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=57.85 E-value=5 Score=39.99 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.4
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+|+||+++||.++++++
T Consensus 197 ~v~LtGG~a~ipgl~e~l~ 215 (239)
T TIGR02529 197 DLYLVGGACSFSGFADVFE 215 (239)
T ss_pred EEEEECchhcchhHHHHHH
Confidence 4899999999998888774
No 123
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=56.72 E-value=32 Score=36.23 Aligned_cols=54 Identities=28% Similarity=0.347 Sum_probs=39.3
Q ss_pred CCcceEEEecCccccHHHHHHHHHhhCCCc--cCCCCCc----hhhHHhhHHHHHHHHhC
Q psy4003 195 GSIHDVVLVGGSIRIPKIQKMLQDFFNGKS--LNLSINP----DEAVAYGAAVQAAILSG 248 (535)
Q Consensus 195 ~~i~~V~LvGGssriP~v~~~l~~~f~~~~--~~~~~~~----deaVa~GAa~~a~~l~~ 248 (535)
.+.+.|+|.|-.+++|-+++.+.+.|...- ....+.+ -..+|.|||+.|..+.|
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhc
Confidence 378899999999999999888888773211 1112222 24589999999988887
No 124
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=56.49 E-value=5.6 Score=40.32 Aligned_cols=19 Identities=32% Similarity=0.772 Sum_probs=16.3
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+|+||++|||-++++++
T Consensus 224 ~IvLtGG~s~lpgl~e~l~ 242 (267)
T PRK15080 224 DIYLVGGTCCLPGFEEVFE 242 (267)
T ss_pred EEEEECCcccchhHHHHHH
Confidence 5899999999998887663
No 125
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=53.14 E-value=54 Score=37.45 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=39.5
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC-------------------CccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG-------------------KSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~-------------------~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
+-|.++|+|-.||+|-||..++...+- .+..+--||-..+|.||-+|+..+.-
T Consensus 778 ~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~ 849 (1014)
T COG4457 778 DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLEL 849 (1014)
T ss_pred cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHhhc
Confidence 667788888888888888888776531 23334568999999999999877653
No 126
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=52.55 E-value=9.9 Score=42.73 Aligned_cols=34 Identities=50% Similarity=0.853 Sum_probs=29.5
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcc
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAK 191 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (535)
|+...+||++|+++++++++++..+++++|.+++
T Consensus 290 ~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~ 323 (602)
T PF00012_consen 290 DFSITITREEFEELCEPLLERIIEPIEKALKDAG 323 (602)
T ss_dssp EEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT
T ss_pred ccccccccceeccccccccccccccccccccccc
Confidence 4556889999999999999999999999887654
No 127
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=52.52 E-value=80 Score=32.85 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=39.2
Q ss_pred CcceEEEecC--ccccH-HHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGG--SIRIP-KIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGG--ssriP-~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
....|+|.|- ++|+| .|++.|++.|. .++ +.+.. +.+|.|+|+.|..+.+
T Consensus 262 ~~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V-~~L~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 262 KEAGVVLAGSGGTLREPINFSGKIKRVLS-CKV-LVLDS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred CCCcEEEeCcchhccCchHHHHHHHHHhC-CCe-EEecc-hhhhhhHHHHHHHHhC
Confidence 3447999986 99999 99999999994 333 23333 8999999999987766
No 128
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=51.96 E-value=12 Score=39.55 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred ceeeeccccchhhhhhhhc----CCCcccc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ----IPPLIFR 157 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~----~~~~~~~ 157 (535)
+|+||||+++||.++++++ +|..+..
T Consensus 317 gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~ 346 (371)
T TIGR01174 317 GIVLTGGGAQLEGIVELAEKVFDNPVRIGL 346 (371)
T ss_pred EEEEeChHHcccCHHHHHHHHhCCCeEEEC
Confidence 5999999999998887553 5554444
No 129
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=50.58 E-value=35 Score=39.70 Aligned_cols=49 Identities=27% Similarity=0.425 Sum_probs=38.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC--CccCCC---CCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG--KSLNLS---INPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~--~~~~~~---~~~deaVa~GAa~~a~ 244 (535)
.++.|+|.||..+-.++++.|.+.+.. .++..+ .--|.+++.|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999999987742 233222 3468999999988774
No 130
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.55 E-value=97 Score=32.59 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=34.8
Q ss_pred HhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhH
Q psy4003 186 ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGA 239 (535)
Q Consensus 186 ~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GA 239 (535)
.+...+ ..+|+.++|.||+..+--+.+++.+..+ ... .-.||-..-+.++
T Consensus 279 y~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~-~~t-~vanPf~~~~~~~ 328 (354)
T COG4972 279 YLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLS-IPT-EVANPFAYMALNV 328 (354)
T ss_pred HHhccc--cceeeEEEEecCCcchhhHHHHHHHHhC-CCe-EeeCHHHHHhhhh
Confidence 444443 3499999999999999999999999983 322 2346654443333
No 131
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=45.15 E-value=53 Score=33.79 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=48.9
Q ss_pred HhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC---CCccCCCCCchhhHHhhHHH
Q psy4003 177 RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN---GKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~---~~~~~~~~~~deaVa~GAa~ 241 (535)
....+.++..-..+.+.++.+|.|+|+||-.+--.+-.+|.+... .-.+.-.-|-.+|-|.||.-
T Consensus 277 AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 277 AMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred HHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 456777788888888999999999999999999988888887642 11222234455888888873
No 132
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=44.57 E-value=1.4e+02 Score=31.65 Aligned_cols=52 Identities=25% Similarity=0.148 Sum_probs=35.5
Q ss_pred cce-EEEecCccccHHHHHHHHHhhCCCccC-CCCCchhhHHhhHHHHHHHHhC
Q psy4003 197 IHD-VVLVGGSIRIPKIQKMLQDFFNGKSLN-LSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 197 i~~-V~LvGGssriP~v~~~l~~~f~~~~~~-~~~~~deaVa~GAa~~a~~l~~ 248 (535)
++. +.|.||...--..-..|.+..+-..+. .+.-.|.-+|+|||+++....+
T Consensus 163 ~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~~~~~~~~ 216 (360)
T PF02543_consen 163 IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAALYAWHELG 216 (360)
T ss_dssp --SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHHHHHHHTT
T ss_pred CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHHHHHHHhc
Confidence 446 999999888777777777763223343 3456789999999999876554
No 133
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.56 E-value=47 Score=30.17 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=17.0
Q ss_pred HHHHHHccC-CccCHHHHHHHHH
Q psy4003 510 ATLTWLEGN-SLAEKEEFEDRLK 531 (535)
Q Consensus 510 e~~~WL~~~-~~~~~~~~~~~l~ 531 (535)
..++||+++ ...|.+++.+|+.
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 346799987 4689999988864
No 134
>PRK03011 butyrate kinase; Provisional
Probab=43.17 E-value=29 Score=36.84 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=37.0
Q ss_pred CCCcceEEEecCccccHHHHHHHHHhhC---CCccCCCCCchhhHHhhHHHH
Q psy4003 194 KGSIHDVVLVGGSIRIPKIQKMLQDFFN---GKSLNLSINPDEAVAYGAAVQ 242 (535)
Q Consensus 194 ~~~i~~V~LvGGssriP~v~~~l~~~f~---~~~~~~~~~~deaVa~GAa~~ 242 (535)
.+++|.|+|.||.+..+.+++.|++.+. ...+...-+..+|.+.||+..
T Consensus 293 ~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 293 KGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 3479999999999999999988887763 233444556668999998743
No 135
>KOG0797|consensus
Probab=41.73 E-value=11 Score=41.40 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=52.3
Q ss_pred HHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCC-----C---------ccCCCCCchhhHHhhH
Q psy4003 174 DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG-----K---------SLNLSINPDEAVAYGA 239 (535)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~-----~---------~~~~~~~~deaVa~GA 239 (535)
++=+.++..|++++.+ .......+.+++|||+...|.+.+.|++..-. . ...+.+||.--+=+||
T Consensus 505 ~ldqsii~sid~~~sd-d~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGa 583 (618)
T KOG0797|consen 505 ALDQSIISSIDSALSD-DTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGA 583 (618)
T ss_pred ccchhHHHhhhhhccc-hhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecch
Confidence 3334566666666665 33344678999999999999999999876531 1 2224478888888999
Q ss_pred HHHHHHHhC
Q psy4003 240 AVQAAILSG 248 (535)
Q Consensus 240 a~~a~~l~~ 248 (535)
|++|.....
T Consensus 584 aIla~l~~~ 592 (618)
T KOG0797|consen 584 AILAILDFV 592 (618)
T ss_pred hhhhHHHHH
Confidence 999876553
No 136
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=39.41 E-value=49 Score=31.11 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=28.9
Q ss_pred HHhhHHHHHhHHHHHHHHHHC----CCCCCCccceeeeccccchhhhhhhhc
Q psy4003 103 ELCMDLFRQTLAPVERALNDA----KLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 103 ~l~~~~~~~~~~~i~~~l~~a----~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
++...+++.+.-.++..++.. +.+ +..|+++||.++.|+..|++.
T Consensus 122 ~~~rAv~Egia~~~~~~~~~l~~~~~~~---~~~i~~~GG~~~n~~~~q~~A 170 (198)
T PF02782_consen 122 DLARAVLEGIAFSLRQILEELEELTGIP---IRRIRVSGGGAKNPLWMQILA 170 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSC---ESEEEEESGGGGSHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhhhhcccccccc---ceeeEeccccccChHHHHHHH
Confidence 344444444433333333332 665 459999999999999999874
No 137
>PRK09557 fructokinase; Reviewed
Probab=38.55 E-value=85 Score=31.94 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=29.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC--------CccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG--------KSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~--------~~~~~~~~~deaVa~GAa~~a 243 (535)
|.+.|+|-||.++.+.+-+.+++.+.. .++..+.-.+.+.++|||+.+
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 788888888777666555445544421 122333345678899999764
No 138
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=37.89 E-value=95 Score=31.59 Aligned_cols=48 Identities=25% Similarity=0.203 Sum_probs=30.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC--------CccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG--------KSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~--------~~~~~~~~~deaVa~GAa~~a 243 (535)
|.+.|+|-||.+..|.+.+.|++.+.. .++..+...+.++++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 778888877766655555555554421 122334455688999999875
No 139
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=37.29 E-value=25 Score=30.72 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=30.0
Q ss_pred hHHHHHhhhcccCCCCcceEEEecCcccc--HHHHHHHHHhhCCC
Q psy4003 181 APVERALNDAKLDKGSIHDVVLVGGSIRI--PKIQKMLQDFFNGK 223 (535)
Q Consensus 181 ~~~~~~l~~~~~~~~~i~~V~LvGGssri--P~v~~~l~~~f~~~ 223 (535)
..+++||.++++.+.+|+.|..-|-++.. +.=.+.|.+.|+..
T Consensus 29 ~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 29 RAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp HHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 44789999999999999999999977775 44455788889543
No 140
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=36.68 E-value=1e+02 Score=31.18 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=32.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCC------ccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGK------SLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~------~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|++-||.+..+.+-+.+++.+... ++..+...+.+.+.|||..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 7788888888776665556666655221 222333456888999998763
No 141
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=35.56 E-value=1.6e+02 Score=31.54 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=32.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCC----CCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL----SINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~----~~~~deaVa~GAa~~a~ 244 (535)
..+.|++.||+.+-|.+.++|++.++ .++.. .+++|--=|..-|++|.
T Consensus 286 ~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~ 337 (365)
T PRK09585 286 GPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAV 337 (365)
T ss_pred CCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHH
Confidence 35689999999999999999999995 33322 24555333444455553
No 142
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=33.78 E-value=1.1e+02 Score=32.50 Aligned_cols=47 Identities=30% Similarity=0.533 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhhHH----HHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC
Q psy4003 170 ELCMDLFRQTLAPV----ERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 170 ~~~~~~~~~~~~~~----~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
++|..+-+...+++ ++|+.+. .+..++++||-+.-.++|++|++...
T Consensus 238 diaasfq~~v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 238 DLCFSLQETIFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 44444444444443 3444433 56789999999999999999999873
No 143
>KOG0680|consensus
Probab=31.52 E-value=22 Score=37.06 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhh
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFF 220 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f 220 (535)
-+..|+++||++..|-++++|...+
T Consensus 317 l~~NIv~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680|consen 317 LLENIVCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred HHhcEEEecCccCCcchHHHHHHHH
Confidence 3568999999999999999997766
No 144
>PRK09604 UGMP family protein; Validated
Probab=31.17 E-value=1.9e+02 Score=30.29 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=39.2
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC--CccCCC---CCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG--KSLNLS---INPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~--~~~~~~---~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|+|.||...-.++++.|.+.+.. .++..+ .-.|.++++|+|-+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 678899999999999999999988732 223222 24579999999966554444
No 145
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=29.35 E-value=1.6e+02 Score=30.58 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=34.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCC--ccCCC---CCchhhHHhhHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGK--SLNLS---INPDEAVAYGAAVQ 242 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~--~~~~~---~~~deaVa~GAa~~ 242 (535)
.++.|.|.||...-.++++.|.+..... .+..+ ..-|.++++|+|-+
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag~ 310 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAGY 310 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHHH
Confidence 5778999999999999999998887321 22222 24578888888744
No 146
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=28.98 E-value=1.5e+02 Score=28.86 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=34.0
Q ss_pred hhHHHHHhhhcccCCCCcceEEEecCccc--cHHHHHHHHHhhCC
Q psy4003 180 LAPVERALNDAKLDKGSIHDVVLVGGSIR--IPKIQKMLQDFFNG 222 (535)
Q Consensus 180 ~~~~~~~l~~~~~~~~~i~~V~LvGGssr--iP~v~~~l~~~f~~ 222 (535)
..-++++|+++++.+.+|+.|++...+.- .|..-..+...++-
T Consensus 12 ~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 12 FEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 44567899999999999999887765433 58888889999954
No 147
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.54 E-value=59 Score=33.18 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCCCHHHH--HHHHHHHHHHHhhchHHHHHHHHHhhHHHHHHHHHH
Q psy4003 444 GRLSKDDI--DRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQ 487 (535)
Q Consensus 444 ~~Ls~eei--~~~~~~l~~l~~~D~~~~e~~~akN~LEs~Iy~~r~ 487 (535)
++|-+.|+ ..++.++.+. ....++++.-..+|.+-++.||.
T Consensus 61 TPLQQKEV~iRHLkakLkes---~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 61 TPLQQKEVCIRHLKAKLKES---ENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred ChHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555543 3455544433 23444455555667777777763
No 148
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=28.52 E-value=1.2e+02 Score=30.07 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=72.7
Q ss_pred EeCHHHHHHHhhHH-----HHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCccccc---c--hhhh-
Q psy4003 95 KITRARFEELCMDL-----FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRD---F--YSKI- 163 (535)
Q Consensus 95 ~ltr~~fe~l~~~~-----~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~---~--~~~~- 163 (535)
.++.+++.+..... +....+.+.++.+.++++.. ++-+|+++..+ + +..+
T Consensus 28 ~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R-------------------~~vl~~~~~~~~p~~~~~~~ps 88 (226)
T PF00195_consen 28 RITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKR-------------------HSVLPEEWLDEYPSFWDFADPS 88 (226)
T ss_dssp EEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEE-------------------EESS-HHHHHTSGGGHSSSSS-
T ss_pred eecHHHHHHHHHHHhcccchhHHHHHHHhhhhcccccee-------------------ccccchhhhhcCcchhhccCcc
Confidence 45565665543222 23456677788888888743 22233333111 1 1112
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecC-ccccHHHHHHHHHhhCCCccC---CCCCchhhHHhhH
Q psy4003 164 TRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGG-SIRIPKIQKMLQDFFNGKSLN---LSINPDEAVAYGA 239 (535)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGG-ssriP~v~~~l~~~f~~~~~~---~~~~~deaVa~GA 239 (535)
..++.+-+.+.-..-....+++||.++|+.+.+|++++.|=- +...|-+--.|.+.+| -+.. ..++..-|.+-.+
T Consensus 89 ~~~R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~Lg-L~~~v~R~~i~~~GC~gg~~ 167 (226)
T PF00195_consen 89 LAERNALYAEEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINRLG-LRPDVQRTPIFGMGCAGGAA 167 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHHHT---TTSEEEEEES-GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhcCC-CCCCcEEEEEeccchhhHHH
Confidence 244445555555555667778899999999999999998752 2478999999999884 2222 2345555555555
Q ss_pred HHH
Q psy4003 240 AVQ 242 (535)
Q Consensus 240 a~~ 242 (535)
++.
T Consensus 168 ~L~ 170 (226)
T PF00195_consen 168 GLR 170 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 149
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=28.25 E-value=1.6e+02 Score=29.99 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=30.2
Q ss_pred CcceEEEecCcccc-HHHHHHHHHhhCC---------CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI-PKIQKMLQDFFNG---------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssri-P~v~~~l~~~f~~---------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||.+.. |.+.+.+++.+.. .++..+.-.+.+++.|||..+.
T Consensus 251 dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 251 NPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred CCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 77888887776653 4555555544421 1223344456889999998764
No 150
>PLN03171 chalcone synthase-like protein; Provisional
Probab=28.10 E-value=1.3e+02 Score=32.38 Aligned_cols=109 Identities=13% Similarity=0.173 Sum_probs=70.3
Q ss_pred EEeCHHHHHHHhhHH-----HHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcC---CCcccccch---hh
Q psy4003 94 SKITRARFEELCMDL-----FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQI---PPLIFRDFY---SK 162 (535)
Q Consensus 94 ~~ltr~~fe~l~~~~-----~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~---~~~~~~~~~---~~ 162 (535)
..++.++|.+..... ..+....++...++.|++.. ++.. ++.++..++ ..
T Consensus 35 ~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R-------------------~~~~~~~~~~~~~~~~~~~~~ 95 (399)
T PLN03171 35 NCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKR-------------------YLHHTEELLSAHPEFLDHDAP 95 (399)
T ss_pred cccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCce-------------------eEeccccccccCccccccCCC
Confidence 467888888774321 23334456677888888644 1211 112222221 11
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCc-cccHHHHHHHHHhhC
Q psy4003 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFN 221 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGs-sriP~v~~~l~~~f~ 221 (535)
-+.++++-+.+.-......-+++||+++|+.+.+||.|+++-.+ -.+|-.--.|.+.+|
T Consensus 96 ~~~~r~~~~~~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LG 155 (399)
T PLN03171 96 SLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLG 155 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhC
Confidence 23566666667777778888999999999999999999983322 247888888999984
No 151
>PLN03169 chalcone synthase family protein; Provisional
Probab=27.88 E-value=1.4e+02 Score=32.02 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCc-cccHHHHHHHHHhhC
Q psy4003 166 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFN 221 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGs-sriP~v~~~l~~~f~ 221 (535)
++++-.-+.-.....+-+++||.++|+.+.+||.|+++-.+ ..+|-.--.|.+.+|
T Consensus 97 ~r~~~~~e~~~~La~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~l~~~LG 153 (391)
T PLN03169 97 QRLDIANEAVTQMAVEASLACIKEWGRPVSDITHLVYVSSSEARLPGGDLYLAKQLG 153 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECcCCCCCCcHHHHHHHHhC
Confidence 34444455556666778899999999999999998877532 267888888888884
No 152
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=27.54 E-value=1.6e+02 Score=32.70 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=38.1
Q ss_pred CcceEEEecCccccHHHHHHHHHhhC--CCccCCC---CCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLS---INPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~--~~~~~~~---~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|+|.||...-.++++.|.+.+. +-++..+ .-.|.+++.|++.+....++
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 46789999999999999999996652 2233322 24579999998876555444
No 153
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.16 E-value=3.7e+02 Score=22.40 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhh--chHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCC
Q psy4003 449 DDIDRMLAEAEKYKAE--DDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNS 519 (535)
Q Consensus 449 eei~~~~~~l~~l~~~--D~~~~e~~~akN~LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~ 519 (535)
++++.++..++.+... +.-.....+++..+++.+..++..+.+-. ..-+++..+....+++|..+++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAA----DQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCh
Confidence 4667777777776543 44556677888888888888888887632 4556677777888888877774
No 154
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=26.03 E-value=90 Score=32.74 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.6
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
+|+|+||++++|-+.++|+
T Consensus 276 GI~LtGGga~l~Gl~~~i~ 294 (326)
T PF06723_consen 276 GIVLTGGGALLRGLDEYIS 294 (326)
T ss_dssp -EEEESGGGGSBTHHHHHH
T ss_pred CEEEEChhhhhccHHHHHH
Confidence 7999999999997777664
No 155
>KOG2707|consensus
Probab=25.98 E-value=6.7e+02 Score=26.82 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccC-CCCCchhhHHhhHH
Q psy4003 182 PVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN-LSINPDEAVAYGAA 240 (535)
Q Consensus 182 ~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~-~~~~~deaVa~GAa 240 (535)
.++++++.....+..+...++.||.++-.+|+.+|+......... .-..|+.|---|.-
T Consensus 291 Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiM 350 (405)
T KOG2707|consen 291 KTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIM 350 (405)
T ss_pred HHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchh
Confidence 355677766677888999999999999999999999876332221 11455555554444
No 156
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=25.57 E-value=1.1e+02 Score=31.79 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=57.5
Q ss_pred EEEEEEeCCCeEEEEE-------eCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCC
Q psy4003 5 GSVLAIDEGSLFQVKS-------TAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST 77 (535)
Q Consensus 5 vSvv~~~~~~~~~vl~-------~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~ 77 (535)
+.++.++.. ...+.- ....-.+||.+++..|++.+--. ...||..|..-+...
T Consensus 182 ~~lvdiG~~-~t~~~i~~~g~~~f~R~i~~G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l~~ 241 (340)
T PF11104_consen 182 VALVDIGAS-STTVIIFQNGKPIFSRSIPIGGNDLTEAIARELGID-------------------FEEAEELKRSGGLPE 241 (340)
T ss_dssp EEEEEE-SS--EEEEEEETTEEEEEEEES-SHHHHHHHHHHHTT---------------------HHHHHHHHHHT----
T ss_pred EEEEEecCC-eEEEEEEECCEEEEEEEEeeCHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCCCc
Confidence 567777766 444322 22345789999999999664211 123455555411000
Q ss_pred ceeEEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHH--HCCCCCCCccceeeeccccchhhhhhhh----cC
Q psy4003 78 EASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALN--DAKLDKGSIHDVVLVGGSIRIPKIQKML----QI 151 (535)
Q Consensus 78 ~~~i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~--~a~~~~~~~~~i~lvGGs~riP~vq~~~----~~ 151 (535)
+...+++.+.++++..-|++.++ .+......|+.|+|+||++++|-+.+++ ++
T Consensus 242 ---------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~ 300 (340)
T PF11104_consen 242 ---------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGI 300 (340)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTS
T ss_pred ---------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCC
Confidence 11223444444455444444444 1222345788999999999998776655 47
Q ss_pred CCcccccc
Q psy4003 152 PPLIFRDF 159 (535)
Q Consensus 152 ~~~~~~~~ 159 (535)
|...-.++
T Consensus 301 ~v~~~~p~ 308 (340)
T PF11104_consen 301 PVEVINPF 308 (340)
T ss_dssp EEEE--GG
T ss_pred ceEEcChH
Confidence 77665554
No 157
>KOG1794|consensus
Probab=24.45 E-value=2.3e+02 Score=29.42 Aligned_cols=48 Identities=38% Similarity=0.380 Sum_probs=30.1
Q ss_pred cceEEEecCccccHHHHHHHHHhhCCCcc--------CCCCCchhhHHhhHHHHHHHHhC
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNGKSL--------NLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~~~~--------~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.-.|++|||.-..- +.|++-| -..+ ....-|.+.-|.|||++||.+.+
T Consensus 264 ~l~Iv~vG~V~~Sw---~~l~~Gf-l~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 264 TLPIVCVGGVFDSW---DLLQEGF-LDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred cceEEEEcchhhHH---HHHHHHH-HHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 33699999965443 3444433 1111 22345778999999999987654
No 158
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=23.63 E-value=1.3e+02 Score=32.69 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=24.8
Q ss_pred hhhcccCCCCcceEEEecCccccHHHHHHHH-HhhCCCccCCCCCchhhHHhhHHHHH
Q psy4003 187 LNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ-DFFNGKSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 187 l~~~~~~~~~i~~V~LvGGssriP~v~~~l~-~~f~~~~~~~~~~~deaVa~GAa~~a 243 (535)
+..+|+.+.||+.|+|.||..+---+++.+. -+++.....+-.-.-.++-.||.+..
T Consensus 318 l~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al~GA~~~L 375 (412)
T PF14574_consen 318 LEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAALAGARMAL 375 (412)
T ss_dssp HHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHHHHHHHHH
T ss_pred HHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHHHHHHHHh
Confidence 3334444448888888888666554555543 33322222222222355666666553
No 159
>PRK09698 D-allose kinase; Provisional
Probab=22.81 E-value=2.2e+02 Score=28.88 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=32.0
Q ss_pred CcceEEEecCcccc-----HHHHHHHHHhhC----C--CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI-----PKIQKMLQDFFN----G--KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssri-----P~v~~~l~~~f~----~--~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||.++. +.+++.+++..- . .++..+...+.+.+.|||+.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 77888888876653 346666665431 1 1234455567889999998764
No 160
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=21.69 E-value=2.9e+02 Score=28.07 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=20.3
Q ss_pred hhhhHHHHHhhhcccC----CCCcceEEE
Q psy4003 178 QTLAPVERALNDAKLD----KGSIHDVVL 202 (535)
Q Consensus 178 ~~~~~~~~~l~~~~~~----~~~i~~V~L 202 (535)
....-+++||.++|+. +.+++.|++
T Consensus 14 l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~ 42 (332)
T cd00825 14 LGFEAAERAIADAGLSREYQKNPIVGVVV 42 (332)
T ss_pred HHHHHHHHHHHHcCCCccccCCCCEEEEE
Confidence 3456678899999999 889999874
No 161
>PRK06840 hypothetical protein; Validated
Probab=21.16 E-value=1.4e+02 Score=30.84 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=33.0
Q ss_pred HhhhhHHHHHhhhcccCCCCcceEEEecCcc---ccHHHHHHHHHhhC
Q psy4003 177 RQTLAPVERALNDAKLDKGSIHDVVLVGGSI---RIPKIQKMLQDFFN 221 (535)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~i~~V~LvGGss---riP~v~~~l~~~f~ 221 (535)
.-....+++||.++|+.+.+||.++.++-.+ ..|..-..|...+|
T Consensus 55 ~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lG 102 (339)
T PRK06840 55 DMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIG 102 (339)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhC
Confidence 3445667899999999999999998765322 36666667777774
No 162
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=20.90 E-value=1.4e+02 Score=31.61 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=36.1
Q ss_pred hhhHHHHHhhhcccCCCCcceEEEecCcccc--HHHHHHHHHhhCC
Q psy4003 179 TLAPVERALNDAKLDKGSIHDVVLVGGSIRI--PKIQKMLQDFFNG 222 (535)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~i~~V~LvGGssri--P~v~~~l~~~f~~ 222 (535)
...-+++||.++|+.+.|||.|++-|-++.. +.-...+.+.|++
T Consensus 277 ~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~~~~~~ 322 (407)
T TIGR03150 277 AARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGD 322 (407)
T ss_pred HHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHHHHhcc
Confidence 3456788999999999999999999988855 5666778899964
No 163
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=20.51 E-value=3.3e+02 Score=23.68 Aligned_cols=11 Identities=36% Similarity=0.743 Sum_probs=7.6
Q ss_pred HHHHHHHHccC
Q psy4003 508 CSATLTWLEGN 518 (535)
Q Consensus 508 l~e~~~WL~~~ 518 (535)
=..+.+||+.|
T Consensus 111 EK~IleWL~KN 121 (122)
T PLN00078 111 EKGILEWLDKN 121 (122)
T ss_pred HHHHHHHHHcc
Confidence 34566899876
No 164
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.47 E-value=3.4e+02 Score=27.75 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCCccceeeeccccchhhhhhhhcCCCcccccchh-hhhHHHHHHHHHHHHHhhhhHHHHHhhhc-ccCCCCcceEEEec
Q psy4003 127 KGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS-KITRARFEELCMDLFRQTLAPVERALNDA-KLDKGSIHDVVLVG 204 (535)
Q Consensus 127 ~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~V~LvG 204 (535)
.++..+|+-+=|+.+..+.++.++ +++.|... .+.+..|-.+.+.-........+.+-.-. .+...++|.++|
T Consensus 109 ~~~~IgViaT~~Tvks~~y~~~i~---~~~~~~~V~~la~p~lV~lvE~g~~~~~~~~~~l~~~l~~~~~~~~DtlVL-- 183 (269)
T COG0796 109 RNGRIGVIATPATVKSNAYRDLIA---RFAPDCEVESLACPELVPLVEEGIRGGPVALEVLKEYLPPLQEAGPDTLVL-- 183 (269)
T ss_pred cCCeEEEEeccchhccHHHHHHHH---HhCCCCEEEEecCcchHHHHhcccccCHHHHHHHHHHhcchhccCCCEEEE--
Confidence 344567888889999999999886 11111111 11222333333322221111111111000 011124666666
Q ss_pred CccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 205 GSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 205 GssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
|.|--|+++..+++.+| ..+ .-+|+-+++|...+.
T Consensus 184 GCTHyPll~~~i~~~~~-~~v-~lids~~~~a~~~~~ 218 (269)
T COG0796 184 GCTHYPLLKPEIQQVLG-EHV-ALIDSGAETARRLAR 218 (269)
T ss_pred eCcCcHHHHHHHHHHhC-CCc-eEeCCHHHHHHHHHH
Confidence 89999999999999995 433 345777666666553
No 165
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.36 E-value=79 Score=33.38 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=33.2
Q ss_pred HHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhh
Q psy4003 175 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 220 (535)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f 220 (535)
........++++|.++|+.+.||+.+++-+++.++- ...+++.|
T Consensus 269 ~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~--d~~~~~ll 312 (372)
T PRK07515 269 VCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN--QLIGKKVL 312 (372)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH--HHHHHHhc
Confidence 344455678999999999999999999999987754 23344446
No 166
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=20.04 E-value=1.6e+02 Score=31.00 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=48.5
Q ss_pred HhhhhHHHHHhhhcccCCCCcceEEEecCc--cccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 177 RQTLAPVERALNDAKLDKGSIHDVVLVGGS--IRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~i~~V~LvGGs--sriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
.....-.++||.+||+++.|||-|++.-=+ --+|-.--.|++.+| .+- ..--|-.+||...++|..
T Consensus 54 ~la~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG-~~~--~~afDl~aaCsgf~yaL~ 121 (323)
T COG0332 54 DLAVEAARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLG-LGG--APAFDLQAACSGFLYALS 121 (323)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhC-CCC--cceeechhhhHHHHHHHH
Confidence 334556789999999999999999988755 446899999999994 333 334566666666666643
Done!