Query psy4003
Match_columns 535
No_of_seqs 259 out of 2101
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 22:55:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9q_A Chaperone protein DNAK; 100.0 4E-62 1.4E-66 543.2 48.5 387 2-535 199-593 (605)
2 3d2f_A Heat shock protein homo 100.0 4.2E-61 1.4E-65 540.1 43.6 389 2-535 208-615 (675)
3 2kho_A Heat shock protein 70; 100.0 3.9E-61 1.3E-65 535.3 41.9 387 2-535 199-593 (605)
4 1yuw_A Heat shock cognate 71 k 100.0 4.5E-56 1.5E-60 490.0 30.0 350 2-489 204-553 (554)
5 2v7y_A Chaperone protein DNAK; 100.0 7.9E-52 2.7E-56 451.9 35.6 334 2-479 172-509 (509)
6 4e81_A Chaperone protein DNAK; 100.0 1.7E-35 5.9E-40 288.5 26.5 205 257-535 1-205 (219)
7 1u00_A HSC66, chaperone protei 100.0 4.7E-33 1.6E-37 273.1 26.5 202 260-535 1-202 (227)
8 3n8e_A Stress-70 protein, mito 100.0 4.4E-30 1.5E-34 243.1 16.8 165 254-489 17-181 (182)
9 3h0x_A 78 kDa glucose-regulate 100.0 7.2E-28 2.5E-32 222.0 17.5 151 259-479 2-152 (152)
10 3dob_A Heat shock 70 kDa prote 100.0 5.3E-28 1.8E-32 222.7 14.4 151 259-479 2-152 (152)
11 3i33_A Heat shock-related 70 k 99.9 7.4E-27 2.5E-31 246.5 21.9 179 2-248 225-403 (404)
12 4gni_A Putative heat shock pro 99.9 9E-27 3.1E-31 246.5 22.2 179 2-248 216-403 (409)
13 3dqg_A Heat shock 70 kDa prote 99.9 8.2E-28 2.8E-32 221.2 12.1 150 259-479 2-151 (151)
14 3qfu_A 78 kDa glucose-regulate 99.9 3.7E-26 1.3E-30 239.8 22.0 178 2-247 217-394 (394)
15 2op6_A Heat shock 70 kDa prote 99.9 3.9E-26 1.3E-30 210.5 15.7 151 259-479 2-152 (152)
16 1dkg_D Molecular chaperone DNA 99.9 6.9E-25 2.4E-29 229.8 19.3 176 2-246 199-382 (383)
17 1q5l_A Chaperone protein DNAK; 99.8 1.6E-20 5.4E-25 169.5 13.3 119 254-442 14-132 (135)
18 1jce_A ROD shape-determining p 99.7 9.3E-18 3.2E-22 173.2 9.6 161 2-247 158-327 (344)
19 4a2a_A Cell division protein F 99.3 8.1E-12 2.8E-16 132.8 11.9 155 2-245 217-393 (419)
20 3h1q_A Ethanolamine utilizatio 99.2 5.1E-11 1.8E-15 118.3 10.9 109 22-243 164-272 (272)
21 2ych_A Competence protein PILM 99.2 3.7E-11 1.3E-15 125.1 9.8 141 2-234 202-342 (377)
22 2fsj_A Hypothetical protein TA 99.1 5.7E-11 1.9E-15 123.1 8.9 140 2-243 201-342 (346)
23 2zgy_A Plasmid segregation pro 99.0 4.2E-10 1.4E-14 115.0 6.4 46 196-243 272-319 (320)
24 4ehu_A Activator of 2-hydroxyi 98.8 4.8E-09 1.6E-13 104.6 7.9 74 169-247 183-256 (276)
25 1k8k_A ARP3, actin-like protei 98.8 4E-09 1.4E-13 111.5 7.5 86 2-101 174-276 (418)
26 3lof_A Heat shock 70 kDa prote 98.8 1.2E-08 4.1E-13 88.7 8.5 69 467-535 3-73 (113)
27 2fxu_A Alpha-actin-1, actin, a 98.7 2.9E-08 1E-12 103.5 10.1 49 196-244 293-348 (375)
28 2p32_A Heat shock 70 kDa prote 98.5 8.9E-08 3E-12 84.1 4.0 69 467-535 12-82 (120)
29 1ud0_A HSC70, 70 kDa heat-shoc 98.3 3.5E-07 1.2E-11 79.2 3.4 65 471-535 2-68 (113)
30 4apw_A ALP12; actin-like prote 98.1 3.6E-06 1.2E-10 86.3 6.1 49 196-247 278-326 (329)
31 3js6_A Uncharacterized PARM pr 97.8 1.2E-05 4.1E-10 83.3 5.1 48 196-248 290-339 (355)
32 1k8k_B ARP2, actin-like protei 97.5 0.00012 3.9E-09 76.8 7.5 48 197-244 298-363 (394)
33 1hux_A Activator of (R)-2-hydr 96.2 0.012 4E-07 58.3 8.3 49 197-246 209-257 (270)
34 3ezw_A Glycerol kinase; glycer 95.4 0.031 1.1E-06 60.5 8.7 51 196-248 402-452 (526)
35 3l0q_A Xylulose kinase; xlylul 95.4 0.032 1.1E-06 60.9 8.6 51 196-248 442-492 (554)
36 3i8b_A Xylulose kinase; strain 95.4 0.041 1.4E-06 59.5 9.3 51 196-248 424-474 (515)
37 4bc3_A Xylulose kinase; transf 95.4 0.04 1.4E-06 59.8 9.2 51 196-248 434-484 (538)
38 1nbw_A Glycerol dehydratase re 95.3 0.0062 2.1E-07 65.8 2.5 49 196-244 550-605 (607)
39 3dwl_A Actin-related protein 3 95.2 0.02 7E-07 60.5 6.0 47 198-244 328-395 (427)
40 3ll3_A Gluconate kinase; xylul 95.1 0.057 2E-06 58.1 9.4 51 196-248 393-443 (504)
41 3hz6_A Xylulokinase; xylulose, 95.0 0.06 2.1E-06 58.0 9.3 50 197-248 403-453 (511)
42 2itm_A Xylulose kinase, xylulo 95.0 0.042 1.4E-06 58.8 7.8 52 196-248 386-437 (484)
43 3g25_A Glycerol kinase; IDP007 95.0 0.061 2.1E-06 57.8 9.1 51 196-248 404-454 (501)
44 2d0o_A DIOL dehydratase-reacti 95.0 0.0063 2.2E-07 65.6 1.3 49 196-244 548-603 (610)
45 3jvp_A Ribulokinase; PSI-II, N 94.8 0.059 2E-06 59.0 8.6 51 196-248 439-490 (572)
46 2d4w_A Glycerol kinase; alpha 94.8 0.066 2.3E-06 57.6 8.8 51 196-248 403-453 (504)
47 3h3n_X Glycerol kinase; ATP-bi 94.8 0.072 2.5E-06 57.4 9.0 51 196-248 403-453 (506)
48 2p3r_A Glycerol kinase; glycer 94.6 0.073 2.5E-06 57.4 8.7 51 196-248 401-451 (510)
49 2dpn_A Glycerol kinase; thermu 94.6 0.069 2.3E-06 57.3 8.4 51 196-248 398-448 (495)
50 3ifr_A Carbohydrate kinase, FG 94.5 0.084 2.9E-06 56.9 8.8 51 196-248 400-450 (508)
51 2zf5_O Glycerol kinase; hypert 94.5 0.084 2.9E-06 56.6 8.8 51 196-248 393-443 (497)
52 2w40_A Glycerol kinase, putati 94.4 0.092 3.2E-06 56.4 8.7 51 196-248 406-457 (503)
53 4e1j_A Glycerol kinase; struct 94.1 0.083 2.8E-06 57.1 7.6 51 196-248 425-475 (520)
54 2uyt_A Rhamnulokinase; rhamnos 93.2 0.22 7.4E-06 53.2 8.9 49 196-247 393-441 (489)
55 2ews_A Pantothenate kinase; PA 92.6 0.19 6.6E-06 50.1 6.9 48 196-243 236-286 (287)
56 2i7n_A Pantothenate kinase 1; 88.5 0.7 2.4E-05 47.5 6.8 48 196-243 305-358 (360)
57 4b9q_A Chaperone protein DNAK; 87.4 0.091 3.1E-06 57.9 -0.7 19 132-150 336-354 (605)
58 4gni_A Putative heat shock pro 85.1 0.43 1.5E-05 49.3 3.1 45 102-150 321-365 (409)
59 3h6e_A Carbohydrate kinase, FG 85.0 0.32 1.1E-05 52.0 2.1 46 198-245 389-435 (482)
60 2kho_A Heat shock protein 70; 84.8 0.13 4.6E-06 56.6 -1.0 19 132-150 336-354 (605)
61 3i33_A Heat shock-related 70 k 83.0 0.6 2.1E-05 48.0 3.1 46 101-150 327-372 (404)
62 3qb0_A Actin-related protein 4 82.9 3.8 0.00013 43.9 9.4 48 197-244 414-470 (498)
63 3qfu_A 78 kDa glucose-regulate 80.5 0.8 2.7E-05 46.8 2.9 48 99-150 317-364 (394)
64 2v7y_A Chaperone protein DNAK; 78.6 0.64 2.2E-05 49.9 1.5 19 132-150 305-323 (509)
65 1dkg_D Molecular chaperone DNA 75.7 0.88 3E-05 46.4 1.5 19 132-150 336-354 (383)
66 2e2o_A Hexokinase; acetate and 72.3 6 0.00021 38.6 6.6 49 196-245 239-287 (299)
67 1jce_A ROD shape-determining p 71.1 1.2 4E-05 44.8 1.1 19 132-150 280-298 (344)
68 3ttc_A HYPF, transcriptional r 69.7 15 0.0005 40.7 9.5 50 196-245 599-651 (657)
69 4a2a_A Cell division protein F 68.4 3.6 0.00012 42.9 4.2 51 100-150 297-349 (419)
70 2ych_A Competence protein PILM 65.4 6.6 0.00023 39.7 5.4 49 100-150 279-327 (377)
71 3vth_A Hydrogenase maturation 65.3 11 0.00039 42.3 7.6 53 196-248 693-750 (761)
72 2gup_A ROK family protein; sug 65.1 20 0.00069 34.6 8.7 50 196-245 227-287 (292)
73 3r8e_A Hypothetical sugar kina 63.2 18 0.0006 35.8 8.0 49 196-244 260-318 (321)
74 3h1q_A Ethanolamine utilizatio 62.0 2.6 9.1E-05 40.5 1.5 19 132-150 229-247 (272)
75 3eno_A Putative O-sialoglycopr 60.7 27 0.00091 35.1 8.8 53 196-248 249-306 (334)
76 2ivn_A O-sialoglycoprotein end 60.6 22 0.00075 35.6 8.1 53 196-248 244-301 (330)
77 4htl_A Beta-glucoside kinase; 58.6 20 0.0007 35.0 7.4 50 196-245 237-291 (297)
78 3vgl_A Glucokinase; ROK family 55.2 32 0.0011 33.9 8.2 49 196-244 252-311 (321)
79 4db3_A Glcnac kinase, N-acetyl 54.7 22 0.00076 35.2 7.0 48 196-243 269-324 (327)
80 4g9i_A Hydrogenase maturation 54.5 26 0.00089 39.5 8.1 51 196-246 705-760 (772)
81 3js6_A Uncharacterized PARM pr 53.4 9.9 0.00034 38.6 4.1 115 2-150 195-313 (355)
82 2aa4_A Mannac kinase, putative 53.3 19 0.00064 34.8 6.0 48 196-243 233-286 (289)
83 2qm1_A Glucokinase; alpha-beta 52.9 29 0.001 33.9 7.5 49 196-244 262-320 (326)
84 3d2f_A Heat shock protein homo 52.6 5.6 0.00019 44.2 2.3 34 158-191 296-329 (675)
85 1yuw_A Heat shock cognate 71 k 50.0 7.7 0.00026 41.9 2.8 34 158-191 292-325 (554)
86 4ehu_A Activator of 2-hydroxyi 48.5 5.9 0.0002 38.3 1.5 120 2-150 104-227 (276)
87 3vov_A Glucokinase, hexokinase 48.4 33 0.0011 33.5 7.0 49 196-244 237-294 (302)
88 3ven_A O-carbamoyltransferase 47.9 61 0.0021 35.2 9.5 53 196-248 307-360 (576)
89 4fo0_A Actin-related protein 8 47.8 10 0.00036 40.9 3.5 48 197-244 501-563 (593)
90 1k8k_A ARP3, actin-like protei 43.4 7 0.00024 40.2 1.2 40 111-150 295-336 (418)
91 2hoe_A N-acetylglucosamine kin 42.6 63 0.0021 32.6 8.3 49 196-244 314-370 (380)
92 3qbx_A Anhydro-N-acetylmuramic 42.2 69 0.0024 32.8 8.3 50 196-245 283-336 (371)
93 1hnj_A Beta-ketoacyl-acyl carr 39.7 27 0.00091 34.2 4.8 45 174-221 215-259 (317)
94 2fxu_A Alpha-actin-1, actin, a 38.8 9.8 0.00034 38.6 1.4 121 22-150 175-314 (375)
95 2fsj_A Hypothetical protein TA 38.3 14 0.00047 37.2 2.4 44 98-150 272-315 (346)
96 2q2r_A Glucokinase 1, putative 35.3 58 0.002 32.7 6.6 50 196-245 304-371 (373)
97 1ub7_A 3-oxoacyl-[acyl-carrier 35.0 33 0.0011 33.6 4.6 44 175-221 218-261 (322)
98 2ebd_A 3-oxoacyl-[acyl-carrier 35.0 33 0.0011 33.2 4.6 43 176-221 209-251 (309)
99 1zow_A 3-oxoacyl-[acyl-carrier 34.7 38 0.0013 33.0 4.9 44 175-221 210-253 (313)
100 2zgy_A Plasmid segregation pro 34.7 15 0.00053 36.2 2.0 115 2-150 175-291 (320)
101 2ap1_A Putative regulator prot 34.5 22 0.00077 35.0 3.2 47 196-243 269-324 (327)
102 3cqy_A Anhydro-N-acetylmuramic 32.5 85 0.0029 32.1 7.1 47 196-244 289-341 (370)
103 3htv_A D-allose kinase, alloki 32.3 1.2E+02 0.004 29.6 8.1 49 196-244 239-298 (310)
104 1mzj_A Beta-ketoacylsynthase I 32.2 44 0.0015 33.1 5.0 43 176-221 230-272 (339)
105 2yhw_A Bifunctional UDP-N-acet 31.6 98 0.0034 30.5 7.5 49 196-245 284-338 (343)
106 3epq_A Putative fructokinase; 31.4 76 0.0026 31.0 6.5 49 196-244 224-288 (302)
107 2x3e_A 3-oxoacyl-[acyl-carrier 29.4 48 0.0017 32.6 4.7 42 177-221 224-265 (331)
108 3oit_A OS07G0271500 protein; t 28.8 60 0.0021 33.1 5.4 57 165-221 86-143 (387)
109 1z6r_A MLC protein; transcript 27.5 77 0.0026 32.1 6.0 49 196-244 334-392 (406)
110 1u6e_A 3-oxoacyl-[acyl-carrier 27.2 56 0.0019 32.0 4.7 43 176-221 231-273 (335)
111 3ov2_A Curcumin synthase; type 26.6 60 0.0021 33.2 4.9 108 95-221 30-149 (393)
112 1mzj_A Beta-ketoacylsynthase I 26.4 71 0.0024 31.5 5.3 46 109-154 230-276 (339)
113 2ch5_A NAGK protein; transfera 26.4 35 0.0012 33.7 3.0 47 199-246 268-325 (347)
114 1saz_A Probable butyrate kinas 25.9 59 0.002 33.0 4.7 49 195-243 294-346 (381)
115 1z05_A Transcriptional regulat 25.6 1.1E+02 0.0039 31.2 6.9 48 196-244 357-414 (429)
116 1zbs_A Hypothetical protein PG 25.2 28 0.00097 33.7 2.0 45 196-245 234-280 (291)
117 2zf5_O Glycerol kinase; hypert 25.0 74 0.0025 33.4 5.4 22 129-150 393-414 (497)
118 2gp6_A 3-oxoacyl-[acyl-carrier 24.4 46 0.0016 34.5 3.6 45 179-223 304-350 (434)
119 2x3e_A 3-oxoacyl-[acyl-carrier 24.1 74 0.0025 31.2 4.9 45 109-153 223-268 (331)
120 2ebd_A 3-oxoacyl-[acyl-carrier 24.1 72 0.0025 30.8 4.8 45 109-153 209-254 (309)
121 1j3n_A 3-oxoacyl-(acyl-carrier 23.8 37 0.0013 34.7 2.7 42 180-221 278-321 (408)
122 1zc6_A Probable N-acetylglucos 23.6 39 0.0013 32.9 2.7 41 196-244 250-292 (305)
123 4ewp_A 3-oxoacyl-[acyl-carrier 22.8 53 0.0018 32.6 3.6 43 179-221 66-110 (350)
124 1k8k_B ARP2, actin-like protei 22.6 26 0.0009 35.8 1.2 111 24-150 181-318 (394)
125 2itm_A Xylulose kinase, xylulo 22.5 1.1E+02 0.0039 31.8 6.3 51 96-150 356-407 (484)
126 3euo_A Type III pentaketide sy 21.8 1.4E+02 0.0046 30.3 6.4 56 166-221 72-128 (379)
127 1sz2_A Glucokinase, glucose ki 21.7 1.2E+02 0.0042 29.7 6.0 49 196-245 264-326 (332)
128 3zyy_X Iron-sulfur cluster bin 21.3 99 0.0034 33.9 5.5 55 188-242 526-581 (631)
129 3nmd_A CGMP dependent protein 20.6 3E+02 0.01 21.3 6.7 41 453-493 27-67 (72)
No 1
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=100.00 E-value=4e-62 Score=543.23 Aligned_cols=387 Identities=45% Similarity=0.732 Sum_probs=364.8
Q ss_pred ceEEEEEEEeC----CCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCC
Q psy4003 2 RTNGSVLAIDE----GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST 77 (535)
Q Consensus 2 T~DvSvv~~~~----~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~ 77 (535)
|||+|++++.+ + .++|++++|+.+|||.+||.+|++|+.++|..+++.++..+++.+.+|+.+||++|+.||...
T Consensus 199 T~Dvsi~~~~~~~~~~-~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~ 277 (605)
T 4b9q_A 199 AFDISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ 277 (605)
T ss_dssp CEEEEEEEEEESSSCE-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred eEEEEEEEEecCCCCc-eEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCC
Confidence 89999999998 8 999999999999999999999999999999999998888899999999999999999999999
Q ss_pred ceeEEEecccC----CeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCC
Q psy4003 78 EASLEIDALHE----GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPP 153 (535)
Q Consensus 78 ~~~i~i~~~~~----~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~ 153 (535)
.+.+.++.+.. +.++.++|||++|++++.++++++..+++++|+++++.+.
T Consensus 278 ~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~------------------------- 332 (605)
T 4b9q_A 278 QTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVS------------------------- 332 (605)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGG-------------------------
T ss_pred CeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-------------------------
Confidence 88888876543 3678999999999999999999999999999988887766
Q ss_pred cccccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchh
Q psy4003 154 LIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 233 (535)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~de 233 (535)
+|+.|+||||+||||+|+++|+++| +.++..+.||++
T Consensus 333 ------------------------------------------~i~~VvLvGG~sriP~v~~~l~~~f-g~~~~~~~nPde 369 (605)
T 4b9q_A 333 ------------------------------------------DIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDE 369 (605)
T ss_dssp ------------------------------------------GCSEEEEESGGGGSHHHHHHHHHHH-TSCCCSSSCTTT
T ss_pred ------------------------------------------HCcEEEEeCCccCchHHHHHHHHHh-ccCcCCCcChhH
Confidence 9999999999999999999999999 688899999999
Q ss_pred hHHhhHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCC
Q psy4003 234 AVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSK 313 (535)
Q Consensus 234 aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (535)
|||+|||++|+.+++ .++++.+.|++|+++|+++.+|.+.+||++|+++|+++++.|++.
T Consensus 370 aVA~GAai~a~~l~~----~~~~~~l~dv~p~slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~---------------- 429 (605)
T 4b9q_A 370 AVAIGAAVQGGVLTG----DVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA---------------- 429 (605)
T ss_dssp HHHHHHHHHHHHHHT----SSCSEEEECBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCS----------------
T ss_pred HHHHhHHHHHHHhcC----CCCceEEEeeeeeEEEEEEcCCEEEEEEeCCCcCCcceEEEeeee----------------
Confidence 999999999999998 357899999999999999999999999999999999999999887
Q ss_pred CCCCCCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCcee
Q psy4003 314 MSCWPDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLG 393 (535)
Q Consensus 314 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig 393 (535)
.++|+.+.|.||||++..+.+|..||
T Consensus 430 ------------------------------------------------------~d~q~~v~i~v~~ge~~~~~~n~~lg 455 (605)
T 4b9q_A 430 ------------------------------------------------------EDNQSAVTIHVLQGERKRAADNKSLG 455 (605)
T ss_dssp ------------------------------------------------------STTCCEEEEEEEESSCSBGGGSEEEE
T ss_pred ------------------------------------------------------cccCceEEEEEEeccccccccCCEee
Confidence 88999999999999999999999999
Q ss_pred eEEEcCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHH
Q psy4003 394 TFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVA 473 (535)
Q Consensus 394 ~~~i~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~ 473 (535)
+|.+.|+||+|+|.++|+|+|++|.||+|+|++.+..+|++.+++|++. ..||++|++++.+.++++..+|++.+++.+
T Consensus 456 ~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~ 534 (605)
T 4b9q_A 456 QFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKCEELVQ 534 (605)
T ss_dssp EEEEECCCCCSTTCCCEEEEEEECTTSCEEEEEEETTTCCEECCEEESC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcCCCceEEEEEEEcCCcEEEEEEEecCCCcEEEEEecCC-CCCCHHHHHHHHHHhhhhHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 579999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 474 AKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 474 akN~LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
+||+||+|+|.+++.|++...++++++|++|.+.+++.++||+.+ ++++|++++++|++
T Consensus 535 ~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~~ 593 (605)
T 4b9q_A 535 TRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQ 593 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999987557889999999999999999999987 47899999999863
No 2
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=100.00 E-value=4.2e-61 Score=540.11 Aligned_cols=389 Identities=26% Similarity=0.431 Sum_probs=358.0
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
||||||+++.+| .++|++++|+.+|||+|||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||....+.+
T Consensus 208 T~Dvsv~~~~~g-~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i 286 (675)
T 3d2f_A 208 SYTCSIMAFKKG-QLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPF 286 (675)
T ss_dssp CEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEEecCC-eEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEE
Confidence 899999999999 9999999999999999999999999999999999988888999999999999999999999988899
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.++.+.+|.++.++|||++|++++.++++++..+++++|++++++++
T Consensus 287 ~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~--------------------------------- 333 (675)
T 3d2f_A 287 SVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAE--------------------------------- 333 (675)
T ss_dssp EETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGG---------------------------------
T ss_pred EEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh---------------------------------
Confidence 99888888899999999999999999999999999988888887766
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+|+.|+||||+||||.|++.|+++| +.++..+.||++|||+|||+
T Consensus 334 ----------------------------------~I~~VvLvGGssriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAa~ 378 (675)
T 3d2f_A 334 ----------------------------------EVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAF 378 (675)
T ss_dssp ----------------------------------GCCEEEEESGGGGSHHHHHHHHHHH-TSCEECCSCTTTHHHHHHHH
T ss_pred ----------------------------------hCcEEEEECCCccChHHHHHHHHhc-CCCccccCCcchHHHHHHHH
Confidence 8999999999999999999999999 67788899999999999999
Q ss_pred HHHHHhCCCcccccceeeeecccCcceeEeeCC----EEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGG----VMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 242 ~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~----~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
+|+.+++ .++++++.+.|++|+++|+++.++ .+.+||++|+++|++++++|++.
T Consensus 379 ~a~~ls~--~~~v~~~~l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~-------------------- 436 (675)
T 3d2f_A 379 ICAIHSP--TLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRT-------------------- 436 (675)
T ss_dssp HHHHTCS--SCCCCCCEEEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEES--------------------
T ss_pred HHHHhCC--CCcccceEEEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeec--------------------
Confidence 9999998 677899999999999999999877 49999999999999999999876
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEE-EecCccccc-CCCceeeE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQV-FEGERAMTK-DNNLLGTF 395 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v-~~g~~~~~~-~~~~ig~~ 395 (535)
.++ .+.+ |+|++.++. +|..||+|
T Consensus 437 --------------------------------------------------~~~----~~~~~~~ge~~~~~~~n~~lg~f 462 (675)
T 3d2f_A 437 --------------------------------------------------GDF----SMAASYTDITQLPPNTPEQIANW 462 (675)
T ss_dssp --------------------------------------------------SCE----EEEEEESCGGGSCTTCCSEEEEE
T ss_pred --------------------------------------------------CCc----eEEEEEcCCcccccccCceeeEE
Confidence 222 2344 678888887 99999999
Q ss_pred EEcCCCCCCCCCC-eEEEEEEeCCCceEEEEEe----------ecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhh
Q psy4003 396 NLTGIPPAPRGVP-KIEVTFDLDANGILNVSAK----------DSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAE 464 (535)
Q Consensus 396 ~i~~~~~~~~g~~-~I~v~f~id~nGil~v~~~----------~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~ 464 (535)
.+.|+||+|+|.+ +|+|+|++|.||+|+|++. +..+|+...++|++...+||+++++++.+++++|..+
T Consensus 463 ~l~gi~~~~~g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~ 542 (675)
T 3d2f_A 463 EITGVQLPEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQ 542 (675)
T ss_dssp EEECCCCCSSCSCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcCCCCCCCcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999985 9999999999999999995 5778888899998865689999999999999999999
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHccC-CccCHHHHHHHHHHhhC
Q psy4003 465 DDKQRERVAAKNKLESYAFAVKQAAEDSG-SKLSDADKTSVSQACSATLTWLEGN-SLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 465 D~~~~e~~~akN~LEs~Iy~~r~~Le~~~-~~~t~~ek~~i~~~l~e~~~WL~~~-~~~~~~~~~~~l~~L~~ 535 (535)
|+..+++.++||+||+|+|.+|+.|++.. .++++++++++...|+++++|||++ .++++++|++|+++|++
T Consensus 543 D~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~ 615 (675)
T 3d2f_A 543 DKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELAS 615 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999997644 7899999999999999999999975 57899999999999973
No 3
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=100.00 E-value=3.9e-61 Score=535.31 Aligned_cols=387 Identities=45% Similarity=0.743 Sum_probs=361.7
Q ss_pred ceEEEEEEEe----CCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCC
Q psy4003 2 RTNGSVLAID----EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST 77 (535)
Q Consensus 2 T~DvSvv~~~----~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~ 77 (535)
|||+||+++. +| .++|++++|+.+|||+|||.+|++|+.++|+.+++.++..+++++.+|+.+||++|+.||...
T Consensus 199 T~Dvsi~~~~~~~~~g-~~~v~a~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~ 277 (605)
T 2kho_A 199 TFDISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ 277 (605)
T ss_dssp CEEEEEEEEECTTTSC-EEEEEEEEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSS
T ss_pred eEEEEEEEEEecCCCC-eEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Confidence 8999999998 78 999999999999999999999999999999998888888889999999999999999999998
Q ss_pred ceeEEEecccC---C-eeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCC
Q psy4003 78 EASLEIDALHE---G-IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPP 153 (535)
Q Consensus 78 ~~~i~i~~~~~---~-~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~ 153 (535)
.+.+.++.+.+ | .++.++|||++|++++.++++++..+++++|+++++.+.
T Consensus 278 ~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~------------------------- 332 (605)
T 2kho_A 278 QTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVS------------------------- 332 (605)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHHHHHTTTCCTT-------------------------
T ss_pred ceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh-------------------------
Confidence 88888876554 3 567889999999999999998888888888888877655
Q ss_pred cccccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchh
Q psy4003 154 LIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 233 (535)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~de 233 (535)
+|+.|+||||+||||.|++.|+++| +..+..+.||++
T Consensus 333 ------------------------------------------~i~~VvLvGG~srip~v~~~l~~~f-g~~~~~~~npd~ 369 (605)
T 2kho_A 333 ------------------------------------------DIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDE 369 (605)
T ss_dssp ------------------------------------------TCSEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTT
T ss_pred ------------------------------------------hCceEEEECCcccChHHHHHHHHhc-CCCcCcCCCcch
Confidence 9999999999999999999999999 678889999999
Q ss_pred hHHhhHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCC
Q psy4003 234 AVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSK 313 (535)
Q Consensus 234 aVa~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (535)
|||+|||++|+.+++. ++++.+.|++|+++|+++.+|.+.+||++|+++|+++++.|++.
T Consensus 370 aVA~GAa~~a~~l~~~----~~~~~l~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~t~---------------- 429 (605)
T 2kho_A 370 AVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA---------------- 429 (605)
T ss_dssp HHHHHHHHHHTTTTTS----CCCCCCSBCCCCCEEEEETTTEEEEEECTTBCSSEEEEEEECCS----------------
T ss_pred HHHHHHHHHHHHhcCC----ccCceEEeeeeeeccccccCCceEEEEecccccCccceEEEEec----------------
Confidence 9999999999999872 57889999999999999999999999999999999999999877
Q ss_pred CCCCCCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCcee
Q psy4003 314 MSCWPDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLG 393 (535)
Q Consensus 314 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig 393 (535)
.++|+.+.|.||+|++..+.+|..||
T Consensus 430 ------------------------------------------------------~d~q~~v~i~v~~ge~~~~~~n~~lg 455 (605)
T 2kho_A 430 ------------------------------------------------------EDNQSAVTIHVLQGERKRAADNKSLG 455 (605)
T ss_dssp ------------------------------------------------------STTCCEEEEEEEESSCSBGGGSEEEE
T ss_pred ------------------------------------------------------CCCceEEEEEEEeccCcccccCcEEe
Confidence 78999999999999999999999999
Q ss_pred eEEEcCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHH
Q psy4003 394 TFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVA 473 (535)
Q Consensus 394 ~~~i~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~ 473 (535)
+|.+.|+||+|+|.++|+|+|++|.||+|+|++.+..+|+..+++|++. .+||+++++++.++++++..+|++.+++.+
T Consensus 456 ~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~ 534 (605)
T 2kho_A 456 QFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFDELVQ 534 (605)
T ss_dssp EEEEECCCSCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECTT-SSCCHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCCCcEEEEEEEEcCCCceeEEEEEcCCCceeecccccc-cCCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 789999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 474 AKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 474 akN~LEs~Iy~~r~~Le~~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
+||+||+|+|.+++.|++...++++++++++.+.|++.++||+++ ++++|++++++|++
T Consensus 535 ~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~l~~ 593 (605)
T 2kho_A 535 TRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQ 593 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 999999999999999987447899999999999999999999965 78999999999974
No 4
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=100.00 E-value=4.5e-56 Score=489.95 Aligned_cols=350 Identities=76% Similarity=1.102 Sum_probs=330.8
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||+||+++.+| .++|+++.|+.+|||+|||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||....+.+
T Consensus 204 T~Dvsv~~~~~g-~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i 282 (554)
T 1yuw_A 204 TFDVSILTIAAG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASI 282 (554)
T ss_dssp CEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred eEEEEEEEEcCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEE
Confidence 899999999999 9999999999999999999999999999999999888888899999999999999999999998999
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.++.+.+|.++...|+|++|++++.++++++..+++++|+++++.+.
T Consensus 283 ~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~--------------------------------- 329 (554)
T 1yuw_A 283 EIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKS--------------------------------- 329 (554)
T ss_dssp EETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHHHTTCCGG---------------------------------
T ss_pred EEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh---------------------------------
Confidence 99888888899999999999999999999999999999988877666
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+|+.|+||||+||+|.|++.|++.|++.++..+.||++|||+|||+
T Consensus 330 ----------------------------------~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~ 375 (554)
T 1yuw_A 330 ----------------------------------QIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAV 375 (554)
T ss_dssp ----------------------------------GCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHH
T ss_pred ----------------------------------hCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHH
Confidence 8999999999999999999999999778888999999999999999
Q ss_pred HHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCcc
Q psy4003 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAI 321 (535)
Q Consensus 242 ~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
+|+.+++...++++++.+.|++|++||+++.+|.+.+||++|+++|+++++.|++.
T Consensus 376 ~a~~l~~~~~~~~~~~~~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~------------------------ 431 (554)
T 1yuw_A 376 QAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTY------------------------ 431 (554)
T ss_dssp HHHHTTSCCCCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEES------------------------
T ss_pred HHHHhcCCccccccceEEEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeeec------------------------
Confidence 99999985446678899999999999999999999999999999999999999887
Q ss_pred CCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCC
Q psy4003 322 GGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIP 401 (535)
Q Consensus 322 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~ 401 (535)
.++|+.+.|.||||++..+.+|..||+|.+.|+|
T Consensus 432 ----------------------------------------------~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~ 465 (554)
T 1yuw_A 432 ----------------------------------------------SDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIP 465 (554)
T ss_dssp ----------------------------------------------STTCSEEEEEEEESSSSBGGGSEEEEEEEEECCC
T ss_pred ----------------------------------------------cCCCceEEEEEEecCccccccCcEEEEEEEeCCC
Confidence 7899999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHH
Q psy4003 402 PAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESY 481 (535)
Q Consensus 402 ~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~ 481 (535)
++|+|.++|+|+|++|.||+|+|++.+..+|+..+++|++...+||+++++++.+++++|..+|++.+++.++||+||+|
T Consensus 466 ~~~~g~~~i~v~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~ 545 (554)
T 1yuw_A 466 PAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESY 545 (554)
T ss_dssp CCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSC
T ss_pred CCcccccEEEEEEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987678999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy4003 482 AFAVKQAA 489 (535)
Q Consensus 482 Iy~~r~~L 489 (535)
+|.+|+.|
T Consensus 546 ~~~~~~~l 553 (554)
T 1yuw_A 546 AFNMKATV 553 (554)
T ss_dssp CSCSCCCC
T ss_pred HHHHHHhh
Confidence 99987654
No 5
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=100.00 E-value=7.9e-52 Score=451.87 Aligned_cols=334 Identities=46% Similarity=0.798 Sum_probs=308.2
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||+|++++.+| .++|+++.|+.++||.|||..|++|+.++|..+++.++..+++.+.+|+.+||++|+.||....+.+
T Consensus 172 T~Dvsv~~~~~g-~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i 250 (509)
T 2v7y_A 172 TFDVSILELGDG-VFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQI 250 (509)
T ss_dssp CEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred eEEEEEEEEcCC-eEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 899999999999 9999999999999999999999999999999888888888889999999999999999999888888
Q ss_pred EEecccC---C-eeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccc
Q psy4003 82 EIDALHE---G-IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFR 157 (535)
Q Consensus 82 ~i~~~~~---~-~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~ 157 (535)
.++.+.+ | .++.++|+|++|++++.++++++..+++++|+++++.+.
T Consensus 251 ~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~----------------------------- 301 (509)
T 2v7y_A 251 SLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPA----------------------------- 301 (509)
T ss_dssp EEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGG-----------------------------
T ss_pred EEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh-----------------------------
Confidence 8876543 2 467789999999999999999999999999888877655
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHh
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAY 237 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~ 237 (535)
+|+.|+||||+|++|.|++.|++.| +.++..+.||++|||+
T Consensus 302 --------------------------------------~i~~VvLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~aVa~ 342 (509)
T 2v7y_A 302 --------------------------------------DIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAI 342 (509)
T ss_dssp --------------------------------------GCSEEEEESGGGGCHHHHHHHHHHH-SSCCBCCSCTTTHHHH
T ss_pred --------------------------------------HCcEEEEECCcccChHHHHHHHHHh-CCCcCcCCCchhhhHh
Confidence 8999999999999999999999999 6778889999999999
Q ss_pred hHHHHHHHHhCCCcccccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCC
Q psy4003 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCW 317 (535)
Q Consensus 238 GAa~~a~~l~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (535)
|||++|+.+++. ++++.+.|++|+++|+++.++.+.+||++|+++|+++++.|++.
T Consensus 343 Gaa~~a~~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~li~~~~~iP~~~~~~f~~~-------------------- 398 (509)
T 2v7y_A 343 GAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTA-------------------- 398 (509)
T ss_dssp HHHHHHHHHHTC----CCCCCCCCBCSSEEEEEETTTEEEEEECTTCBSSEEEEEEECCS--------------------
T ss_pred hHHHHHHHhcCC----ccCceEEEeeccccceeecCCceEEEEeCCCcCCcceEEEEEee--------------------
Confidence 999999999982 57889999999999999999999999999999999999999877
Q ss_pred CCccCCccccCCcccccccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEE
Q psy4003 318 PDAIGGQLRFTPECCHYSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNL 397 (535)
Q Consensus 318 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i 397 (535)
.++|+.+.|.||+|++..+.+|..||+|.+
T Consensus 399 --------------------------------------------------~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l 428 (509)
T 2v7y_A 399 --------------------------------------------------ADNQTTVDIHVLQGERPMAADNKSLGRFQL 428 (509)
T ss_dssp --------------------------------------------------STTCCEEEEEEEEESSSBGGGSEEEEEEEE
T ss_pred --------------------------------------------------ccCcEEEEEEEEecCccccccCcEEEEEEE
Confidence 789999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEEEEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhh
Q psy4003 398 TGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477 (535)
Q Consensus 398 ~~~~~~~~g~~~I~v~f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~ 477 (535)
.|+|++|+|.++|+|+|++|.||+|+|++.+..+|+..++.|++. .+||+++++++.+++++|..+|+..+++.++||+
T Consensus 429 ~~i~~~~~g~~~i~v~f~id~~gil~v~a~~~~~g~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~ 507 (509)
T 2v7y_A 429 TGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLGTNKEQSITIKSS-SGLSEEEIQRMIKEAEENAEADRKRKEAAELRNE 507 (509)
T ss_dssp ECCCCCCTTCSCEEEEEEECTTSCEEEEEEETTTCCEEEEEECSS-CSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC---
T ss_pred eCCCCCCCcccEEEEEEEEcCCceEEEEEEEcCCCcEEEEEEEec-CCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987 7799999999999999999999999999999999
Q ss_pred HH
Q psy4003 478 LE 479 (535)
Q Consensus 478 LE 479 (535)
||
T Consensus 508 ~e 509 (509)
T 2v7y_A 508 AD 509 (509)
T ss_dssp --
T ss_pred cC
Confidence 86
No 6
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=100.00 E-value=1.7e-35 Score=288.52 Aligned_cols=205 Identities=47% Similarity=0.749 Sum_probs=195.7
Q ss_pred eeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCccccCCccccccc
Q psy4003 257 VLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQLRFTPECCHYSE 336 (535)
Q Consensus 257 ~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 336 (535)
+++.|++|+++|+++.+|.+.+||++|++||+++++.|++.
T Consensus 1 ~~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~--------------------------------------- 41 (219)
T 4e81_A 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA--------------------------------------- 41 (219)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEES---------------------------------------
T ss_pred CeEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeC---------------------------------------
Confidence 35789999999999999999999999999999999999998
Q ss_pred ccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCCCCCCCeEEEEEEe
Q psy4003 337 LSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDL 416 (535)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~~~g~~~I~v~f~i 416 (535)
.|||+.+.|.||||++..+.+|..||+|.|.|+||+|+|.+.|+|+|++
T Consensus 42 -------------------------------~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~~~IeVtf~i 90 (219)
T 4e81_A 42 -------------------------------EDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDI 90 (219)
T ss_dssp -------------------------------STTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCSCEEEEEEE
T ss_pred -------------------------------CCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCCceEEEEEEe
Confidence 8999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC
Q psy4003 417 DANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKL 496 (535)
Q Consensus 417 d~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~Iy~~r~~Le~~~~~~ 496 (535)
|.||+|+|++.+.++|+...++|++. .+||++|++++.+.+++|..+|++.+++.++||.||+|+|.+++.|++....+
T Consensus 91 D~nGiL~V~a~d~~tg~~~~i~I~~~-~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~~~~~l 169 (219)
T 4e81_A 91 DADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKL 169 (219)
T ss_dssp CTTCCEEEEEEETTTCCEEEEEECTT-CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred CCCCCEeeeeeccccCccceEeeecc-ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Confidence 99999999999999999999999886 56999999999999999999999999999999999999999999998755789
Q ss_pred CHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 497 SDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 497 t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
+++++++|.+.|+++++||+++ ++++|++++++|++
T Consensus 170 ~~~~k~~i~~~l~~~~~~L~~~---~~~~i~~~~~~L~~ 205 (219)
T 4e81_A 170 PADDKTAIESALTALETALKGE---DKAAIEAKMQELAQ 205 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 9999999999999999999988 68899999999863
No 7
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=100.00 E-value=4.7e-33 Score=273.12 Aligned_cols=202 Identities=32% Similarity=0.529 Sum_probs=191.6
Q ss_pred eecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCccccCCcccccccccc
Q psy4003 260 VDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQLRFTPECCHYSELSI 339 (535)
Q Consensus 260 ~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 339 (535)
.|++|+++|+++.+|.+.+||++|+++|++++++|++.
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~------------------------------------------ 38 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTF------------------------------------------ 38 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECS------------------------------------------
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEec------------------------------------------
Confidence 48999999999999999999999999999999999988
Q ss_pred eeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCCCCCCCeEEEEEEeCCC
Q psy4003 340 MYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDAN 419 (535)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~~~g~~~I~v~f~id~n 419 (535)
.++|+.+.|.||||++..+.+|..||+|.|.|+||+|+|.++|+|+|++|.|
T Consensus 39 ----------------------------~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~I~Vtf~iD~n 90 (227)
T 1u00_A 39 ----------------------------KDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDAD 90 (227)
T ss_dssp ----------------------------STTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSCEEEEEEECTT
T ss_pred ----------------------------CCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceEEEEEEEECCC
Confidence 7899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCHH
Q psy4003 420 GILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDA 499 (535)
Q Consensus 420 Gil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~Iy~~r~~Le~~~~~~t~~ 499 (535)
|+|+|++.+..+|+...+.|.+. .+||+++++++.+.+++|..+|+..+++.++||.||+|+|.+|+.|++...+++++
T Consensus 91 GiL~V~a~d~~tg~~~~i~i~~~-~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~~~~~~~~~ 169 (227)
T 1u00_A 91 GLLSVTAMEKSTGVEASIQVKPS-YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAA 169 (227)
T ss_dssp CCEEEEEEETTTCCEEEEEECCC-SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred CcEEEEeecccccccceEEEEec-cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH
Confidence 99999999999999999999887 56999999999999999999999999999999999999999999998754788999
Q ss_pred HHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 500 DKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 500 ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
+++++...|++.++||+++ ++++|++++++|++
T Consensus 170 ~k~~i~~~l~~~~~wl~~~---d~~~~~~~~~~L~~ 202 (227)
T 1u00_A 170 ERQVIDDAAAHLSEVAQGD---DVDAIEQAIKNVDK 202 (227)
T ss_dssp HHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 9999999999999999965 48899999999863
No 8
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.4e-30 Score=243.08 Aligned_cols=165 Identities=53% Similarity=0.823 Sum_probs=153.3
Q ss_pred ccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCccccCCcccc
Q psy4003 254 IQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQLRFTPECCH 333 (535)
Q Consensus 254 ~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 333 (535)
...+.+.|++|++||+++.+|.+.+||++|+++|+++++.|++.
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~------------------------------------ 60 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTA------------------------------------ 60 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCS------------------------------------
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEEC------------------------------------
Confidence 35678999999999999999999999999999999999999988
Q ss_pred cccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCCCCCCCeEEEE
Q psy4003 334 YSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVT 413 (535)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~~~g~~~I~v~ 413 (535)
.|+|+.+.|.||||++..+.+|..||+|.|.|+||+|+|.++|+|+
T Consensus 61 ----------------------------------~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~p~G~~~IeVt 106 (182)
T 3n8e_A 61 ----------------------------------ADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVT 106 (182)
T ss_dssp ----------------------------------STTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCSCEEEE
T ss_pred ----------------------------------CCCccEEEEEEEEcCccccccCceEEEEEEcCCCCCCCCCeeEEEE
Confidence 8899999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHHHHHHHHHHHH
Q psy4003 414 FDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAA 489 (535)
Q Consensus 414 f~id~nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LEs~Iy~~r~~L 489 (535)
|++|.||+|+|++.+..+|+...+.|.+. ..||+++++++.+.+++|..+|++.+++.++||.||+|+|.+|+.|
T Consensus 107 f~iD~nGiL~VsA~d~~tg~~~~i~I~~~-~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~~~~~l 181 (182)
T 3n8e_A 107 FDIDANGIVHVSAKDKGTGREQQIVIQSS-GGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKM 181 (182)
T ss_dssp EEECTTCCEEEEEEETTTCCEEEEEESCC-CCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred EEEecCCEEEEEEEEcCCCCEeeEEEecC-ccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999988 8899999999999999999999999999999999999999988644
No 9
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=99.95 E-value=7.2e-28 Score=221.96 Aligned_cols=151 Identities=62% Similarity=0.977 Sum_probs=145.6
Q ss_pred eeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCccccCCccccccccc
Q psy4003 259 LVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQLRFTPECCHYSELS 338 (535)
Q Consensus 259 ~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 338 (535)
+.|++|+++|+++.+|.+.+||++|+++|+++++.|++.
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~----------------------------------------- 40 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTA----------------------------------------- 40 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCS-----------------------------------------
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeC-----------------------------------------
Confidence 579999999999999999999999999999999999988
Q ss_pred ceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCCCCCCCeEEEEEEeCC
Q psy4003 339 IMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDA 418 (535)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~~~g~~~I~v~f~id~ 418 (535)
.|+|+.+.|.||||++..+.+|..||+|.|.|+||+|+|.++|+|+|++|.
T Consensus 41 -----------------------------~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~~I~Vtf~iD~ 91 (152)
T 3h0x_A 41 -----------------------------VDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVPQIEVTFALDA 91 (152)
T ss_dssp -----------------------------STTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCSCEEEEEEECT
T ss_pred -----------------------------CCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCceEEEEEEEcC
Confidence 889999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHH
Q psy4003 419 NGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 479 (535)
Q Consensus 419 nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LE 479 (535)
||+|+|++.+..+|+...+.|.+....||+++++++.+.+++|..+|+..+++.++||.||
T Consensus 92 nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 92 NGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp TSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred CCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999887789999999999999999999999999999999875
No 10
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=99.95 E-value=5.3e-28 Score=222.73 Aligned_cols=151 Identities=68% Similarity=1.053 Sum_probs=141.3
Q ss_pred eeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCccccCCccccccccc
Q psy4003 259 LVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQLRFTPECCHYSELS 338 (535)
Q Consensus 259 ~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 338 (535)
+.|++|++||+++.+|.+.+||++|+++|+++++.|++.
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~----------------------------------------- 40 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTY----------------------------------------- 40 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEES-----------------------------------------
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEEC-----------------------------------------
Confidence 679999999999999999999999999999999999998
Q ss_pred ceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCCCCCCCeEEEEEEeCC
Q psy4003 339 IMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDA 418 (535)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~~~g~~~I~v~f~id~ 418 (535)
.|+|+.+.|.||||++..+.+|..||+|.|.|+||+|+|.++|+|+|++|.
T Consensus 41 -----------------------------~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~~IeVtf~iD~ 91 (152)
T 3dob_A 41 -----------------------------ADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFNIDA 91 (152)
T ss_dssp -----------------------------STTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCCCEEEEEEECT
T ss_pred -----------------------------CCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCceEEEEEEeCC
Confidence 889999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHH
Q psy4003 419 NGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 479 (535)
Q Consensus 419 nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LE 479 (535)
||+|+|++.+..+|+...+.|.+....||+++++++.+.+++|..+|++.+++.++||.||
T Consensus 92 nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 92 NGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp TCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred CCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999887789999999999999999999999999999999875
No 11
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.95 E-value=7.4e-27 Score=246.52 Aligned_cols=179 Identities=78% Similarity=1.138 Sum_probs=168.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||+|++++.++ .++++++.|+..+||.+||..|++++.++|..+++.++..+++.+.+|+.+||++|+.||....+.+
T Consensus 225 T~dvsv~~~~~~-~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~ 303 (404)
T 3i33_A 225 TFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASI 303 (404)
T ss_dssp CEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEE
T ss_pred cEEEEEEEEeCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEE
Confidence 899999999999 9999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.++.+.+|.++.+.++|++|++++.++++++..+++++|+++++.+.
T Consensus 304 ~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~--------------------------------- 350 (404)
T 3i33_A 304 EIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKG--------------------------------- 350 (404)
T ss_dssp EEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGG---------------------------------
T ss_pred EEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh---------------------------------
Confidence 99888889999999999999999999999999999999998877655
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+|+.|+||||+|++|.|++.|++.|++.++....||++|||.|||+
T Consensus 351 ----------------------------------~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~ 396 (404)
T 3i33_A 351 ----------------------------------QIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAV 396 (404)
T ss_dssp ----------------------------------GCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHH
T ss_pred ----------------------------------hCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHH
Confidence 8999999999999999999999999878888999999999999999
Q ss_pred HHHHHhC
Q psy4003 242 QAAILSG 248 (535)
Q Consensus 242 ~a~~l~~ 248 (535)
+|+.+++
T Consensus 397 ~a~~l~~ 403 (404)
T 3i33_A 397 QAAILIG 403 (404)
T ss_dssp HHHHHC-
T ss_pred HHHHhcC
Confidence 9999876
No 12
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.95 E-value=9e-27 Score=246.55 Aligned_cols=179 Identities=34% Similarity=0.540 Sum_probs=166.6
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcc--cchhhhHHHHHHHHHHHHHHHHHhccCCce
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK--KDILANTRAVRRLRTACERAKRTLSSSTEA 79 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~ 79 (535)
|||+|++++.++ .++++++.|+..+||.+||..|++++.++|..+++ .++..+++.+.+|+.+||++|+.||....+
T Consensus 216 T~dvsv~~~~~~-~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~ 294 (409)
T 4gni_A 216 RSDVTVLASRSG-MYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNA 294 (409)
T ss_dssp CEEEEEEEEETT-EEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEE
T ss_pred ceEEEEEEEeCC-eEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCce
Confidence 899999999999 99999999999999999999999999999998888 777788999999999999999999999999
Q ss_pred eEEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccc
Q psy4003 80 SLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDF 159 (535)
Q Consensus 80 ~i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~ 159 (535)
.+.++.+.+|.++..++||++|+++++++++++..+++++|+++++.+.
T Consensus 295 ~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~------------------------------- 343 (409)
T 4gni_A 295 SFSVESLIDGLDFASTINRLRYETIARTVFEGFNRLVESAVKKAGLDPL------------------------------- 343 (409)
T ss_dssp EEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGG-------------------------------
T ss_pred EEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-------------------------------
Confidence 9999988899999999999999999999999999999999999887766
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCC-cc------CCCCCch
Q psy4003 160 YSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGK-SL------NLSINPD 232 (535)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~-~~------~~~~~~d 232 (535)
+|+.|+||||+|++|+|++.|++.|+.. ++ ..+.||+
T Consensus 344 ------------------------------------~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~ 387 (409)
T 4gni_A 344 ------------------------------------DVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPS 387 (409)
T ss_dssp ------------------------------------GCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTT
T ss_pred ------------------------------------HCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHH
Confidence 8999999999999999999999999644 33 6789999
Q ss_pred hhHHhhHHHHHHHHhC
Q psy4003 233 EAVAYGAAVQAAILSG 248 (535)
Q Consensus 233 eaVa~GAa~~a~~l~~ 248 (535)
+|||+|||++|+....
T Consensus 388 ~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 388 ELQARGAALQASLIQE 403 (409)
T ss_dssp THHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999999999987764
No 13
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=99.95 E-value=8.2e-28 Score=221.22 Aligned_cols=150 Identities=58% Similarity=0.912 Sum_probs=143.4
Q ss_pred eeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCccccCCccccccccc
Q psy4003 259 LVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQLRFTPECCHYSELS 338 (535)
Q Consensus 259 ~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 338 (535)
+.|++|+++|+++.+|.+.+||++|+++|+++++.|++.
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~----------------------------------------- 40 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTA----------------------------------------- 40 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEES-----------------------------------------
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEEC-----------------------------------------
Confidence 579999999999999999999999999999999999998
Q ss_pred ceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCCCCCCCeEEEEEEeCC
Q psy4003 339 IMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDA 418 (535)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~~~g~~~I~v~f~id~ 418 (535)
.|+|+.+.|.||||++..+.+|..||+|.|.|+||+|+|.++|+|+|++|.
T Consensus 41 -----------------------------~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~~IeVtf~iD~ 91 (151)
T 3dqg_A 41 -----------------------------ADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDA 91 (151)
T ss_dssp -----------------------------STTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECT
T ss_pred -----------------------------CCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCcEEEEEEEecc
Confidence 889999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHH
Q psy4003 419 NGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 479 (535)
Q Consensus 419 nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LE 479 (535)
||+|+|++.+..+|+...+.|.+. ..||+++++++.+.+++|..+|++.+++.++||.||
T Consensus 92 nGiL~Vsa~d~~tg~~~~i~I~~~-~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 92 NGIVNVSARDRGTGKEQQIVIQSS-GGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp TSEEEEEEEETTTCCEEEEEEECS-SSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred CcEEEEEEEEccCCCEeEEEEecC-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 999999999999999999999988 889999999999999999999999999999998764
No 14
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.94 E-value=3.7e-26 Score=239.80 Aligned_cols=178 Identities=52% Similarity=0.878 Sum_probs=167.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||+|++++.++ .++++++.|+..+||.+||..|++++.++|..+++.++..+++...+|+.+||++|+.||....+.+
T Consensus 217 t~dvsv~~~~~~-~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~ 295 (394)
T 3qfu_A 217 TFDVSLLSIENG-VFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRI 295 (394)
T ss_dssp CEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred ceeEEEEEEeCC-EEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccCCcEEE
Confidence 899999999999 9999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.++.+.+|.++.+.++|++|++++.++++++...++++|+++++.+.
T Consensus 296 ~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~--------------------------------- 342 (394)
T 3qfu_A 296 EIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKK--------------------------------- 342 (394)
T ss_dssp EEEEEETTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHHTCCGG---------------------------------
T ss_pred EEEeccCCceeEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH---------------------------------
Confidence 99888889999999999999999999999999999999998877655
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHH
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAV 241 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~ 241 (535)
+++.|+|+||+|++|.|++.|++.|++.++..+.||++|||.|||+
T Consensus 343 ----------------------------------~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~ 388 (394)
T 3qfu_A 343 ----------------------------------DVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAV 388 (394)
T ss_dssp ----------------------------------GCCEEEEESGGGGSHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHH
T ss_pred ----------------------------------HCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHH
Confidence 8999999999999999999999999778888999999999999999
Q ss_pred HHHHHh
Q psy4003 242 QAAILS 247 (535)
Q Consensus 242 ~a~~l~ 247 (535)
+|+.++
T Consensus 389 ~a~~ls 394 (394)
T 3qfu_A 389 QAGVLS 394 (394)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 998764
No 15
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=99.94 E-value=3.9e-26 Score=210.45 Aligned_cols=151 Identities=56% Similarity=0.947 Sum_probs=144.3
Q ss_pred eeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCccccCCccccccccc
Q psy4003 259 LVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQLRFTPECCHYSELS 338 (535)
Q Consensus 259 ~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 338 (535)
+.|++|++||+++.+|.+.+||++|++||+++++.|++.
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~----------------------------------------- 40 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTA----------------------------------------- 40 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEES-----------------------------------------
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeC-----------------------------------------
Confidence 579999999999999999999999999999999999988
Q ss_pred ceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCCCCCCCeEEEEEEeCC
Q psy4003 339 IMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDA 418 (535)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~~~g~~~I~v~f~id~ 418 (535)
.++|+.+.|.||||++..+.+|..||+|.+.|+|++|+|.++|+|+|++|.
T Consensus 41 -----------------------------~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~~I~V~f~id~ 91 (152)
T 2op6_A 41 -----------------------------ADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDV 91 (152)
T ss_dssp -----------------------------STTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCSCEEEEEEECT
T ss_pred -----------------------------CCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCceEEEEEEECC
Confidence 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecCCCcceeEEEecCCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHhhHH
Q psy4003 419 NGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 479 (535)
Q Consensus 419 nGil~v~~~~~~t~k~~~i~i~~~~~~Ls~eei~~~~~~l~~l~~~D~~~~e~~~akN~LE 479 (535)
||+|+|++.+..+|+...+.|.+....||+++++++.+.+++|..+|+..+++.++||.||
T Consensus 92 nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 92 NGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp TSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred CcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 9999999999999999999998876779999999999999999999999999999999875
No 16
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.93 E-value=6.9e-25 Score=229.80 Aligned_cols=176 Identities=43% Similarity=0.702 Sum_probs=157.9
Q ss_pred ceEEEEEEEe----CCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCC
Q psy4003 2 RTNGSVLAID----EGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST 77 (535)
Q Consensus 2 T~DvSvv~~~----~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~ 77 (535)
|||+|+++.. ++ .++++++.|+..+||.+||..|++++.+++..+++.++..+++.+.+|+.+||++|+.||...
T Consensus 199 ttdvsv~~~~~~~~~~-~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~ 277 (383)
T 1dkg_D 199 TFDISIIEIDEVDGEK-TFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ 277 (383)
T ss_dssp CEEEEEEEEEC----C-CCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSS
T ss_pred eEEEEEEEEEecCCCC-eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCC
Confidence 8999999998 67 899999999999999999999999999999888887777788899999999999999999988
Q ss_pred ceeEEEecccC---C-eeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCC
Q psy4003 78 EASLEIDALHE---G-IDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPP 153 (535)
Q Consensus 78 ~~~i~i~~~~~---~-~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~ 153 (535)
.+.+.++.+.+ | .++.++++|++|++++++.++++...++++|+++++.+.
T Consensus 278 ~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~------------------------- 332 (383)
T 1dkg_D 278 QTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVS------------------------- 332 (383)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTT-------------------------
T ss_pred ceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh-------------------------
Confidence 88888765443 3 456789999999999999999999999999998877655
Q ss_pred cccccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchh
Q psy4003 154 LIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 233 (535)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~de 233 (535)
+++.|+|+||+|++|.|++.|++.| +.++....||++
T Consensus 333 ------------------------------------------~i~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ 369 (383)
T 1dkg_D 333 ------------------------------------------DIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDE 369 (383)
T ss_dssp ------------------------------------------TCCEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTT
T ss_pred ------------------------------------------hCCEEEEecCccccHHHHHHHHHHh-CCCCCCCcChHH
Confidence 8999999999999999999999999 577888999999
Q ss_pred hHHhhHHHHHHHH
Q psy4003 234 AVAYGAAVQAAIL 246 (535)
Q Consensus 234 aVa~GAa~~a~~l 246 (535)
|||+|||++|+.+
T Consensus 370 ava~Gaa~~a~~l 382 (383)
T 1dkg_D 370 AVAIGAAVQGGVL 382 (383)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 17
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=99.84 E-value=1.6e-20 Score=169.55 Aligned_cols=119 Identities=56% Similarity=0.907 Sum_probs=108.6
Q ss_pred ccceeeeecccCcceeEeeCCEEEEEEecCCccCcceeEEEEcCCCCCCCCCccCCcCCCCCCCCCccCCccccCCcccc
Q psy4003 254 IQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMSCWPDAIGGQLRFTPECCH 333 (535)
Q Consensus 254 ~~~~~~~d~~~~~~gi~~~~~~~~~i~~~~~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 333 (535)
++++.+.|++|+++|+++.++.+.+||++|+++|+++++.|++.
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~------------------------------------ 57 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA------------------------------------ 57 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCC------------------------------------
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEec------------------------------------
Confidence 46788999999999999999999999999999999999999987
Q ss_pred cccccceeeccccccccCCCCCCCCCCCCCccccCCCCcceEEEEEecCcccccCCCceeeEEEcCCCCCCCCCCeEEEE
Q psy4003 334 YSELSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVT 413 (535)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~i~v~~g~~~~~~~~~~ig~~~i~~~~~~~~g~~~I~v~ 413 (535)
.|+|+.+.|.||||++..+.+|..||+|.+.|+|++|+|+++|+|+
T Consensus 58 ----------------------------------~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~p~G~~~IeVt 103 (135)
T 1q5l_A 58 ----------------------------------EDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVT 103 (135)
T ss_dssp ----------------------------------SSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSCCSSSCCEEEE
T ss_pred ----------------------------------cCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCCCCceeEEEEE
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEEeecCCCcceeEEEecC
Q psy4003 414 FDLDANGILNVSAKDSSTGKAERITIQND 442 (535)
Q Consensus 414 f~id~nGil~v~~~~~~t~k~~~i~i~~~ 442 (535)
|++|.||+|+|++.+..+|++..++|++.
T Consensus 104 f~iD~nGiL~V~a~d~~tg~~~~i~i~~~ 132 (135)
T 1q5l_A 104 FDIDADGILHVSAKDKNSGKEQKITIKAS 132 (135)
T ss_dssp EEECTTSEEEEEEEETTTCCEEEEEEECS
T ss_pred EEECCCCEEEEEEEECCCCCEEEEEEecC
Confidence 99999999999999999999999999876
No 18
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.71 E-value=9.3e-18 Score=173.19 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=125.3
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCc---
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTE--- 78 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~--- 78 (535)
|||++++..+.. + ..++..+||.+||..|++++.+++.. +.. ...||++|+.||....
T Consensus 158 ttdvsv~~~~~~-----~-~~~~~~lGG~~id~~l~~~l~~~~~~----~~~---------~~~ae~~K~~l~~~~~~~~ 218 (344)
T 1jce_A 158 TTEVAVISLGSI-----V-TWESIRIAGDEMDEAIVQYVRETYRV----AIG---------ERTAERVKIEIGNVFPSKE 218 (344)
T ss_dssp CEEEEEEETTEE-----E-EEEEESCSHHHHHHHHHHHHHHHHCE----ECC---------HHHHHHHHHHHCBCSCCHH
T ss_pred eEEEEEEEcCCE-----E-eeCCCCccChhHHHHHHHHHHHHhCc----ccC---------HHHHHHHHHHHhccCcccc
Confidence 788888876432 1 34567899999999999999877632 211 3579999999997643
Q ss_pred ---eeEEEe--cccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCC
Q psy4003 79 ---ASLEID--ALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPP 153 (535)
Q Consensus 79 ---~~i~i~--~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~ 153 (535)
..+.+. .+.+|.+..++++|++|++++.+.++++...+++++++++....
T Consensus 219 ~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~------------------------- 273 (344)
T 1jce_A 219 NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELV------------------------- 273 (344)
T ss_dssp HHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHH-------------------------
T ss_pred CCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCchhc-------------------------
Confidence 244443 33467778899999999999999999999999999987642100
Q ss_pred cccccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCc-ceEEEecCccccHHHHHHHHHhhCCCccCCCCCch
Q psy4003 154 LIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSI-HDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPD 232 (535)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i-~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~d 232 (535)
...+ +.|+|+||+|++|.|++.|++.| +.++....||+
T Consensus 274 ----------------------------------------~~~~~~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~ 312 (344)
T 1jce_A 274 ----------------------------------------SDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPL 312 (344)
T ss_dssp ----------------------------------------HHHHHHCEEEESGGGCSBTHHHHHHHHH-SSCEEECSSTT
T ss_pred ----------------------------------------cchhhCcEEEECccccchHHHHHHHHHH-CCCccccCChH
Confidence 0024 58999999999999999999999 56777788999
Q ss_pred hhHHhhHHHHHHHHh
Q psy4003 233 EAVAYGAAVQAAILS 247 (535)
Q Consensus 233 eaVa~GAa~~a~~l~ 247 (535)
+|||.||+++|+.++
T Consensus 313 ~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 313 TAVAKGAGMVLDKVN 327 (344)
T ss_dssp THHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHHhChH
Confidence 999999999987544
No 19
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.30 E-value=8.1e-12 Score=132.77 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=112.4
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccC-----
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSS----- 76 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~----- 76 (535)
|||+||+. +| .+. +.++..+||++||+.|+..+. . ....||++|+.++..
T Consensus 217 ttdisi~~--~g-~~~---~~~~i~~GG~~it~dIa~~l~--------~-----------~~~~AE~iK~~~g~a~~~~~ 271 (419)
T 4a2a_A 217 FTGLIAYK--NG-VPI---KISYVPVGMKHVIKDVSAVLD--------T-----------SFEESERLIITHGNAVYNDL 271 (419)
T ss_dssp SEEEEEEE--TT-EEE---EEEEESCCHHHHHHHHHHHHT--------C-----------CHHHHHHHHHHHCCSCCTTC
T ss_pred cEEEEEEE--CC-EEE---EEEecccHHHHHHHHHHHHHC--------C-----------CHHHHHHHHHHhccCcccCC
Confidence 78888876 45 332 234678999999999987531 1 246899999998752
Q ss_pred CceeEEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCccc
Q psy4003 77 TEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIF 156 (535)
Q Consensus 77 ~~~~i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~ 156 (535)
....+.+.... .+...+++|++|++++++.++++...+++.|++++.+.. +.+
T Consensus 272 ~~~~i~v~~~~--~~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p-------------------------~~~ 324 (419)
T 4a2a_A 272 KEEEIQYRGLD--GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIV-------------------------EEG 324 (419)
T ss_dssp CCCEEEEECTT--SCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------------------
T ss_pred CCceEEEeecC--CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-------------------------ccc
Confidence 34567776543 246789999999999999999999999999999887310 000
Q ss_pred ccchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCC--------
Q psy4003 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS-------- 228 (535)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~-------- 228 (535)
. ...++.|+|+||+|+||.+++.+++.|+ .++...
T Consensus 325 ~------------------------------------~~~~~~IvLtGG~s~lpgl~e~~~~~~g-~~vri~~~~~~~p~ 367 (419)
T 4a2a_A 325 E------------------------------------IGIPGGVVLTGGGAKIPRINELATEVFK-SPVRTGCYANSDRP 367 (419)
T ss_dssp ----------------------------------------TTCEEEESGGGGSTTHHHHHHHHHT-SCEEECCGGGSSSC
T ss_pred c------------------------------------cccCCEEEEECchhchhhHHHHHHHHHC-CCeEEEecCCCCch
Confidence 0 0167899999999999999999999994 444322
Q ss_pred ---------CCchhhHHhhHHHHHHH
Q psy4003 229 ---------INPDEAVAYGAAVQAAI 245 (535)
Q Consensus 229 ---------~~~deaVa~GAa~~a~~ 245 (535)
-+|..+.|.|.+++++.
T Consensus 368 ~~~~~~~~~~~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 368 SIINADEVANDPSFAAAFGNVFAVSE 393 (419)
T ss_dssp CCBTCHHHHTCGGGHHHHHTTCC---
T ss_pred hccCcccccCCchHHHHHHHHHHHhh
Confidence 37889999999988754
No 20
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.19 E-value=5.1e-11 Score=118.32 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=89.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeEEEecccCCeeeEEEeCHHHH
Q psy4003 22 AGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARF 101 (535)
Q Consensus 22 ~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i~i~~~~~~~~~~~~ltr~~f 101 (535)
.+...+||.+||..+++++. .+ ...+|++|+.++ +++++
T Consensus 164 ~~~~~~Gg~~~~~~l~~~l~--------~~-----------~~~ae~~k~~~~----------------------~~~~~ 202 (272)
T 3h1q_A 164 TFDEPTGGTHLSLVLAGSYK--------IP-----------FEEAETIKKDFS----------------------RHREI 202 (272)
T ss_dssp ECCBSCCHHHHHHHHHHHHT--------CC-----------HHHHHHHHHSST----------------------THHHH
T ss_pred EecCCCcHHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcC----------------------CHHHH
Confidence 35678999999999998763 11 346788888875 57888
Q ss_pred HHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchhhhhHHHHHHHHHHHHHhhhh
Q psy4003 102 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELCMDLFRQTLA 181 (535)
Q Consensus 102 e~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (535)
++++.+.++++...+.+.++..+
T Consensus 203 ~~~~~~~~~~i~~~i~~~l~~~~--------------------------------------------------------- 225 (272)
T 3h1q_A 203 MRVVRPVIEKMALIVKEVIKNYD--------------------------------------------------------- 225 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---------------------------------------------------------
Confidence 88888888888888777665431
Q ss_pred HHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHH
Q psy4003 182 PVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 182 ~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a 243 (535)
+++.|+|+||++++|.+++.|++.| +.++..+.||++++|+|||++|
T Consensus 226 --------------~~~~ivL~GG~a~~~~l~~~l~~~l-~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 226 --------------QTLPVYVVGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp --------------SSCCEEEESGGGGSTTHHHHHHHHH-SSCCBCCSSGGGHHHHHHHTTC
T ss_pred --------------CCCEEEEECCccchhhHHHHHHHHh-CCCccccCChHHHHHHHHHhcC
Confidence 3779999999999999999999999 6788888999999999999864
No 21
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.19 E-value=3.7e-11 Score=125.08 Aligned_cols=141 Identities=22% Similarity=0.233 Sum_probs=81.3
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||++++. +| .+ ...++..+||.+||..|++.+ +.+ ...||++|+.++.......
T Consensus 202 ttdi~i~~--~g-~~---~~~~~~~~GG~~i~~~i~~~~--------~~~-----------~~~aE~~K~~~~~~~~~~~ 256 (377)
T 2ych_A 202 STSLVLLR--GD-KP---LAVRVLTLSGKDFTEAIARSF--------NLD-----------LLAAEEVKRTYGMATLPTE 256 (377)
T ss_dssp CEEEEEEE--TT-EE---EEEEEESCSHHHHHHHHHHHT--------TCC-----------HHHHHHHHHHTC-------
T ss_pred cEEEEEEE--CC-EE---EEEEeeechHHHHHHHHHHHh--------CCC-----------HHHHHHHHhhccccccccc
Confidence 67777775 33 22 234567899999999998732 222 3578999999885432111
Q ss_pred EEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccchh
Q psy4003 82 EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYS 161 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~~ 161 (535)
.......-......++|++|++++.+.++++...+++.++...
T Consensus 257 ~~~~~i~~~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~------------------------------------- 299 (377)
T 2ych_A 257 DEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFR------------------------------------- 299 (377)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 1000000011334677778888888888877777777776421
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhh
Q psy4003 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEA 234 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~dea 234 (535)
++.....++.|+|+||+|++|.+++.+++.| +.++... ||+++
T Consensus 300 ----------------------------~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l-~~~v~~~-~P~~~ 342 (377)
T 2ych_A 300 ----------------------------IQLEEASPEVGYLLGGGSKLRGLASLLTDTL-GVNLEPV-NPWEA 342 (377)
T ss_dssp ----------------------------HHC---CCSEEEEESGGGGSTTHHHHHHHHH-TSEEEEC-CGGGG
T ss_pred ----------------------------hccCCCCcCEEEEECccccchhHHHHHHHHh-CCCeEec-Cchhh
Confidence 1112227899999999999999999999999 4444433 55443
No 22
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.15 E-value=5.7e-11 Score=123.06 Aligned_cols=140 Identities=14% Similarity=0.072 Sum_probs=103.0
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|||++|+++++| . .|.+++++..+||++||+.|++++.+++.... ++. . ..+| ....+
T Consensus 201 TtDv~vi~~~~g-~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g~~~--~i~-~--------~~~e---------~~~~~ 258 (346)
T 2fsj_A 201 TTDVLTINLMDM-E-PVVELSFSLQIGVGDAISALSRKIAKETGFVV--PFD-L--------AQEA---------LSHPV 258 (346)
T ss_dssp CEEEEEEETTTT-E-ECGGGCEEESCCHHHHHHHHHHHHHHHHCCCC--CHH-H--------HHHH---------TTSCE
T ss_pred cEEEEEEEecCC-E-EEeecCCCcchhHHHHHHHHHHHHHHHhCCCc--CCC-H--------HHHh---------cCCeE
Confidence 899999999888 6 67776788899999999999998877664210 221 0 1112 11223
Q ss_pred EEecccCCeeeEEEeCHHHH-HHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCcccccch
Q psy4003 82 EIDALHEGIDFYSKITRARF-EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFY 160 (535)
Q Consensus 82 ~i~~~~~~~~~~~~ltr~~f-e~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~~~~~ 160 (535)
.+ .|. .++++++ +++++++++++.+.+++++.++ .+
T Consensus 259 ~~----~g~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~-------------------------------- 295 (346)
T 2fsj_A 259 MF----RQK----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VD-------------------------------- 295 (346)
T ss_dssp EE----TTE----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GG--------------------------------
T ss_pred eE----CCc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hh--------------------------------
Confidence 33 343 3458899 9999999999998888887664 22
Q ss_pred hhhhHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCcc-CCCCCchhhHHhhH
Q psy4003 161 SKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSL-NLSINPDEAVAYGA 239 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~-~~~~~~deaVa~GA 239 (535)
+++.|+|+||++++ +++.|++.|+...+ ....||++|+|.|+
T Consensus 296 -----------------------------------~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~ 338 (346)
T 2fsj_A 296 -----------------------------------RVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGY 338 (346)
T ss_dssp -----------------------------------GEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHH
T ss_pred -----------------------------------cccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHH
Confidence 67899999999999 99999999953222 12679999999999
Q ss_pred HHHH
Q psy4003 240 AVQA 243 (535)
Q Consensus 240 a~~a 243 (535)
..++
T Consensus 339 ~~~~ 342 (346)
T 2fsj_A 339 RDAA 342 (346)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 23
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=98.97 E-value=4.2e-10 Score=114.99 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=40.5
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCC--ccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGK--SLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~--~~~~~~~~deaVa~GAa~~a 243 (535)
+++.|+|+||+|++ +++.|++.|+.. ++....||++|+|+||+++|
T Consensus 272 ~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 272 GYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp CCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred CCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 78999999999998 999999999532 56778899999999999875
No 24
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=98.82 E-value=4.8e-09 Score=104.61 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHh
Q psy4003 169 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 247 (535)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~ 247 (535)
++++..+.......+...+.+. .+++.|+|+||++++|.||+.|++.| +.++..+.||++++|+|||++|....
T Consensus 183 ~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~-g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 183 EDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHH-TSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHH-CCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 3455555554444443333332 37889999999999999999999999 78888999999999999999996544
No 25
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=98.82 E-value=4e-09 Score=111.51 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=52.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCC----
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST---- 77 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~---- 77 (535)
||||+++. +| . -+....+...+||++||..|.+++.+++. ......+ ...+|++|+.++...
T Consensus 174 tt~v~~v~--~G-~-~~~~~~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~~-------~~~~e~iK~~~~~v~~~~~ 239 (418)
T 1k8k_A 174 VTHVIPVA--EG-Y-VIGSCIKHIPIAGRDITYFIQQLLRDREV---GIPPEQS-------LETAKAVKERYSYVCPDLV 239 (418)
T ss_dssp CEEEEEEE--TT-E-ECGGGCEEESCSHHHHHHHHHHHHHTTCC---CCCGGGH-------HHHHHHHHHHHCCCCSCHH
T ss_pred ceEEEEeE--CC-E-EcccceEEEeCcHHHHHHHHHHHHHhcCC---CCCCHHH-------HHHHHHHHHhhchhcccHH
Confidence 56666653 33 2 22233356789999999999999876542 1111111 245677787776432
Q ss_pred -------------ceeEEEecccCCeeeEEEeCHHHH
Q psy4003 78 -------------EASLEIDALHEGIDFYSKITRARF 101 (535)
Q Consensus 78 -------------~~~i~i~~~~~~~~~~~~ltr~~f 101 (535)
...+.+.....+.+..++++++.|
T Consensus 240 ~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf 276 (418)
T 1k8k_A 240 KEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERF 276 (418)
T ss_dssp HHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHH
T ss_pred HHHHhhcccccccceeEECCCCCCCcccEEEeChHHh
Confidence 134566554455667889999988
No 26
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=98.80 E-value=1.2e-08 Score=88.70 Aligned_cols=69 Identities=52% Similarity=0.826 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 467 KQRERVAAKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 467 ~~~e~~~akN~LEs~Iy~~r~~Le~~--~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
+++++.++||.||+|+|.++..|.+. ...++++++++|...|+++.+||+.+..+++++|+.++++|++
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~ 73 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQ 73 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 57889999999999999999999873 2789999999999999999999999888999999999999973
No 27
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=98.72 E-value=2.9e-08 Score=103.51 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=40.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC-------CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~-------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
.++.|+|+||+|++|-++++|++.++. .++....||+.+|++||+++|.
T Consensus 293 l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 293 LYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp HHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred HHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 456899999999999999999988742 2334567899999999999986
No 28
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=98.45 E-value=8.9e-08 Score=84.12 Aligned_cols=69 Identities=41% Similarity=0.615 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 467 KQRERVAAKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 467 ~~~e~~~akN~LEs~Iy~~r~~Le~~--~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
.++++.++||.||+|||.++..|.++ ...++++++++|...|+++.+||+++.++++++|+.++++|++
T Consensus 12 ~~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~ 82 (120)
T 2p32_A 12 SGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEG 82 (120)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 34678899999999999999999762 2689999999999999999999997777899999999999873
No 29
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=98.27 E-value=3.5e-07 Score=79.24 Aligned_cols=65 Identities=40% Similarity=0.672 Sum_probs=55.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHccCCccCHHHHHHHHHHhhC
Q psy4003 471 RVAAKNKLESYAFAVKQAAED--SGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535 (535)
Q Consensus 471 ~~~akN~LEs~Iy~~r~~Le~--~~~~~t~~ek~~i~~~l~e~~~WL~~~~~~~~~~~~~~l~~L~~ 535 (535)
+.++||.||+|||.++..|.+ ....++++++++|...|+++.+||+++..+++++|+.++++|++
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~ 68 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEK 68 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Confidence 467899999999999999974 23789999999999999999999986666788999999999863
No 30
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=98.05 E-value=3.6e-06 Score=86.33 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=41.5
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHh
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 247 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~ 247 (535)
.++.|+|+||++.+ +.+.+++.| +..+....||..|+|+|+..++....
T Consensus 278 ~~~~IvltGGGA~l--~~~~l~~~~-~~~v~v~~~P~~a~a~G~~~~~~~k~ 326 (329)
T 4apw_A 278 QLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNSQWTTCEGLYKVAVAKY 326 (329)
T ss_dssp SCSEEEEESTTHHH--HHHHHHHHS-TTCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HccEEEEECChHHH--HHHHHHHHc-CCCCEecCCChhhHHHHHHHHHhhhh
Confidence 57899999999998 579999999 44566788999999999998876554
No 31
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=97.82 E-value=1.2e-05 Score=83.32 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=41.4
Q ss_pred CcceEEEecCccccHH--HHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPK--IQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~--v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|+|+||++.++. +.+.+++.|+.. .||..|+|.|+..++..+.+
T Consensus 290 ~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~-----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 290 SIDRIIVTGGGANIHFDSLSHYYSDVFEKA-----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp SCSEEEEESTTHHHHHHHHHHHSSSCEECC-----SSGGGHHHHHHHHHHHHHHH
T ss_pred hccEEEEECcchhcchhhHHHHHHHHCCCC-----CCcHHHHHHHHHHHHHHHHh
Confidence 7789999999999998 888999888432 79999999999999877664
No 32
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=97.53 E-value=0.00012 Score=76.80 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=18.8
Q ss_pred cceEEEecCccccHHHHHHHHHhhCC------------------CccCCCCCchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNG------------------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~------------------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
++.|+|+||+|++|-+.++|++.+.. .++..+.+|..++.+||+++|.
T Consensus 298 ~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 298 YKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp HTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC---------------------
T ss_pred HhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 45688888888888777777766631 1122245677999999999885
No 33
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=96.16 E-value=0.012 Score=58.33 Aligned_cols=49 Identities=27% Similarity=0.278 Sum_probs=43.0
Q ss_pred cceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 246 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l 246 (535)
.+.|+++||.++.|.+++.+.+.+ +.++..+.+++.+.|+|||+.|+..
T Consensus 209 ~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 209 VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHh
Confidence 368999999999999999999999 6777777777789999999998654
No 34
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=95.44 E-value=0.031 Score=60.52 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=44.6
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++.+. ...|+.|+|||+.|+.-.|
T Consensus 402 ~~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alGAA~lA~~a~G 452 (526)
T 3ezw_A 402 RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLAVG 452 (526)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHHHHHHHHHHhC
Confidence 5678999999999999999999999 6777654 5668999999999988777
No 35
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=95.40 E-value=0.032 Score=60.87 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=44.3
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... ...|+.|+|||+.|+.-.|
T Consensus 442 ~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~lA~~a~G 492 (554)
T 3l0q_A 442 NIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAMMGTVAAG 492 (554)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHHHHHHHcC
Confidence 5778999999999999999999999 6777654 5578999999999987766
No 36
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=95.37 E-value=0.041 Score=59.50 Aligned_cols=51 Identities=33% Similarity=0.480 Sum_probs=43.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|+|||+.|+.-.|
T Consensus 424 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G 474 (515)
T 3i8b_A 424 SITRILLIGGGAKSEAIRTLAPSIL-GMDVTRP-ATDEYVAIGAARQAAWVLS 474 (515)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-CCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECchhcCHHHHHHHHHHh-CCceEec-CCcccHHHHHHHHHHHHcC
Confidence 5678999999999999999999999 6776554 5678999999999987665
No 37
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=95.35 E-value=0.04 Score=59.84 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=43.8
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|+|||+.|+.-.|
T Consensus 434 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 434 SKTKILATGGASHNREILQVLADVF-DAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp TTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcchhcCHHHHHHHHHHh-CCceEec-CCCCchHHHHHHHHHHHhC
Confidence 5778999999999999999999999 6766554 5688999999999987655
No 38
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=95.32 E-value=0.0062 Score=65.80 Aligned_cols=49 Identities=29% Similarity=0.304 Sum_probs=40.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccC-------CCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN-------LSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~-------~~~~~deaVa~GAa~~a~ 244 (535)
+|..|+|+||+|++|-+.++.++.|+.-.+. ..-+|..|+|.|.+++.+
T Consensus 550 ~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 550 DIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp TCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHHH
T ss_pred ccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCchHHHHHHHHHhhh
Confidence 7899999999999999999999999540221 135899999999998753
No 39
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.16 E-value=0.02 Score=60.45 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=33.5
Q ss_pred ceEEEecCccccHHHHHHHHHhhC-------------------C--CccCCCCCchhhHHhhHHHHHH
Q psy4003 198 HDVVLVGGSIRIPKIQKMLQDFFN-------------------G--KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 198 ~~V~LvGGssriP~v~~~l~~~f~-------------------~--~~~~~~~~~deaVa~GAa~~a~ 244 (535)
..|+|+||+|.+|-+.++|++.+. . .++..+.++..++=+|++++|.
T Consensus 328 ~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 328 KNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp HCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred CCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeecc
Confidence 469999999999988888776541 1 1222334566899999999984
No 40
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=95.09 E-value=0.057 Score=58.12 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=44.4
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|.|||+.|+.-.|
T Consensus 393 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 443 (504)
T 3ll3_A 393 KPVAINATGGFLKSDFVRQLCANIF-NVPIVTM-KEQQSGTLAAMFLARQALG 443 (504)
T ss_dssp CCSEEEEESGGGCSHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCchhcCHHHHHHHHHhh-CCeEEec-CCCCchhHHHHHHHHHHcC
Confidence 5779999999999999999999999 6777654 5678999999999987766
No 41
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=95.02 E-value=0.06 Score=58.05 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=44.3
Q ss_pred cceEEEecCccccHHHHHHHHHhhCCCcc-CCCCCchhhHHhhHHHHHHHHhC
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNGKSL-NLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~~~~-~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
++.|.++||.++.|++.+++.+.| +.++ .. ..+.|+.|.|||+.|+.-.|
T Consensus 403 ~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~~e~~alGaA~lA~~a~G 453 (511)
T 3hz6_A 403 VGLLKVVGGGARSEAWLRMIADNL-NVSLLVK-PDAHLHPLRGLAALAAVELE 453 (511)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHH-TCEEEEC-CCGGGHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEe-cCCCCchHHHHHHHHHHHhC
Confidence 788999999999999999999999 6777 54 46899999999999987766
No 42
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=94.98 E-value=0.042 Score=58.78 Aligned_cols=52 Identities=33% Similarity=0.422 Sum_probs=43.6
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|.+.+++.+.| +.++.....++.+.|+|||+.|+.-.|
T Consensus 386 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA~~~~g 437 (484)
T 2itm_A 386 KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_dssp CCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHHHHHHC
T ss_pred CcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHHHHHcC
Confidence 5678999999999999999999999 677776644444689999999987666
No 43
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=94.96 E-value=0.061 Score=57.80 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=44.1
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|.|||+.|+.-.|
T Consensus 404 ~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 404 DVQSLRVDGGAVKNNFIMQFQADIV-NTSVERP-EIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEecchhcCHHHHHHHHHHh-CCceEec-CCCcchHHHHHHHHHHHhC
Confidence 4678999999999999999999999 6776554 5678999999999987766
No 44
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=94.96 E-value=0.0063 Score=65.56 Aligned_cols=49 Identities=33% Similarity=0.284 Sum_probs=40.4
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccC-------CCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN-------LSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~-------~~~~~deaVa~GAa~~a~ 244 (535)
+|..|+|+||+|++|-+.++.++.|+.-.+. ..-+|..|+|.|.+++.+
T Consensus 548 ~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 548 DIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp GCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred ccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 7899999999999999999999999540221 135899999999998764
No 45
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=94.80 E-value=0.059 Score=58.98 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=44.0
Q ss_pred CcceEEEecCcc-ccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSI-RIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGss-riP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.+ +.|+..+++.+.| +.++... .+.|+.|+|||+.|+.-.|
T Consensus 439 ~~~~i~~~GGga~ks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 490 (572)
T 3jvp_A 439 EVHELYACGGLPQKNHLLMQIFADVT-NREIKVA-ASKQTPALGAAMFASVAAG 490 (572)
T ss_dssp CEEEEEEESSHHHHCHHHHHHHHHHH-TSCEEEB-CCSSHHHHHHHHHHHHHHC
T ss_pred CcCEEEEEcCchhhCHHHHHHHHHHH-CCeeEec-CCCccHHHHHHHHHHHhcC
Confidence 577899999999 9999999999999 6776544 5689999999999987665
No 46
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=94.80 E-value=0.066 Score=57.59 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=43.9
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|.|||+.|+.-.|
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 453 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYAAGIAVG 453 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHHHHhhcC
Confidence 4678999999999999999999999 6777654 5678999999999987766
No 47
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=94.77 E-value=0.072 Score=57.35 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=44.3
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|+|||+.|+.-.|
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 453 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRA-ANLETTALGAAYLAGLAVG 453 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-SSSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEecccccCHHHHHHHHHHh-CCeEEec-CCCcchhHHHHHHHHHHhC
Confidence 5678999999999999999999999 6777554 5778999999999987766
No 48
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=94.63 E-value=0.073 Score=57.37 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=44.2
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.+++.+++.+.| +.++... .+.|+.|+|||+.|+.-.|
T Consensus 401 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 451 (510)
T 2p3r_A 401 RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLAVG 451 (510)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHHT
T ss_pred CccEEEEeCchhcCHHHHHHHHHHh-CCceEec-CCCCcHHHHHHHHHHHHhC
Confidence 5678999999999999999999999 6777554 5678999999999987776
No 49
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=94.62 E-value=0.069 Score=57.29 Aligned_cols=51 Identities=24% Similarity=0.336 Sum_probs=43.5
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|.|||+.|+.-.|
T Consensus 398 ~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 398 RLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALMAGVGAG 448 (495)
T ss_dssp CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHHHHhhcC
Confidence 4668999999999999999999999 6777654 5567999999999987666
No 50
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=94.51 E-value=0.084 Score=56.87 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=43.6
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... ...|+.|+|||+.|+.-.|
T Consensus 400 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 450 (508)
T 3ifr_A 400 APQRFFASDGGTRSRVWMGIMADVL-QRPVQLL-ANPLGSAVGAAWVAAIGGG 450 (508)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-ECCSTHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEec-CCCCchHHHHHHHHHHHhC
Confidence 5678999999999999999999999 6777655 3467899999999987776
No 51
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=94.51 E-value=0.084 Score=56.63 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=43.9
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|+|||+.|+.-.|
T Consensus 393 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 393 QIKELRVDGGATANDFLMQFQADIL-NRKVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred CcceEEEeCccccCHHHHHHHHhhc-CCeEEEc-CCCcchHHHHHHHHHHHhC
Confidence 5788999999999999999999999 6777654 4567999999999987665
No 52
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=94.36 E-value=0.092 Score=56.40 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=43.2
Q ss_pred Cc-ceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SI-HDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i-~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.+ +.|.++||.++.|++.+++.+.| +.++... .+.|+.|.|||+.|+.-.|
T Consensus 406 ~~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 406 EMLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp SCCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred CccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHHHhC
Confidence 45 68999999999999999999999 6777654 5667999999999987665
No 53
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=94.08 E-value=0.083 Score=57.13 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=43.3
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.++||.++.|++.+++.+.| +.++... .+.|+.|+|||+.|+.-.|
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G 475 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDRP-VILETTALGVAWLAGSRAG 475 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCCCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEec-CCCccHHHHHHHHHHHHcC
Confidence 5788999999999999999999999 6777654 5678999999999988776
No 54
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=93.19 E-value=0.22 Score=53.16 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=40.2
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHHHh
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILS 247 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~l~ 247 (535)
.++.|.++||.++.|++.+++.+.| +.++... . .|+.|.|||+.|+.-.
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~-~e~~alGaa~~A~~a~ 441 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLMTL 441 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-C-TTHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecC-C-ccHhHHHHHHHHHHHc
Confidence 4678999999999999999999999 6777644 3 6999999977665433
No 55
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=92.60 E-value=0.19 Score=50.14 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=41.3
Q ss_pred CcceEEEecC-ccccHHHHHHHHHhh--CCCccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGG-SIRIPKIQKMLQDFF--NGKSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGG-ssriP~v~~~l~~~f--~~~~~~~~~~~deaVa~GAa~~a 243 (535)
.++.|+++|| .+..|.+++.+.+.+ .+.++..+.+|..+.|.|||+.|
T Consensus 236 ~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 236 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 4557999999 899999999999874 46778788899999999999864
No 56
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=88.54 E-value=0.7 Score=47.52 Aligned_cols=48 Identities=21% Similarity=0.072 Sum_probs=40.7
Q ss_pred CcceEEEecC-ccccHHHHHHHHHhhC-----CCccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGG-SIRIPKIQKMLQDFFN-----GKSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGG-ssriP~v~~~l~~~f~-----~~~~~~~~~~deaVa~GAa~~a 243 (535)
.++.|+++|| .++.|.+++.|.+.++ +.++....+|.-+-|+|||+.+
T Consensus 305 ~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 305 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 4557999999 9999999999999873 4566667789999999999975
No 57
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=87.40 E-value=0.091 Score=57.92 Aligned_cols=19 Identities=53% Similarity=0.947 Sum_probs=17.8
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++|||+||++++
T Consensus 336 ~VvLvGG~sriP~v~~~l~ 354 (605)
T 4b9q_A 336 DVILVGGQTRMPMVQKKVA 354 (605)
T ss_dssp EEEEESGGGGSHHHHHHHH
T ss_pred EEEEeCCccCchHHHHHHH
Confidence 7999999999999999884
No 58
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=85.12 E-value=0.43 Score=49.34 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=27.9
Q ss_pred HHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 102 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 102 e~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
+.++..+++-+.+.++++ .-.....+ .|+||||++|||+|+++++
T Consensus 321 ~~~~~~i~~~i~~~l~~~-~~~~~~i~---~V~LvGG~s~~p~v~~~l~ 365 (409)
T 4gni_A 321 RTVFEGFNRLVESAVKKA-GLDPLDVD---EVIMSGGTSNTPRIAANFR 365 (409)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCGGGCC---EEEEESGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCHHHCC---EEEEECCccccHHHHHHHH
Confidence 334444444444444443 22222334 7999999999999999885
No 59
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=85.03 E-value=0.32 Score=52.00 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=40.0
Q ss_pred ceEEEecCccccHHHHHHHHHh-hCCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 198 HDVVLVGGSIRIPKIQKMLQDF-FNGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 198 ~~V~LvGGssriP~v~~~l~~~-f~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.|.+.||.++.|+..+++.+. | +.++.+. ...|+.|+|||+.|+.
T Consensus 389 ~~i~~~GG~a~s~~w~Qi~ADv~~-g~pV~~~-~~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 389 GRILVEGRFAEADVFVRALASLRP-DCAVYTA-NAHNDVSFGALRLIDP 435 (482)
T ss_dssp SEEEEESGGGGCHHHHHHHHHHST-TSEEEEE-SSCCCTTGGGHHHHCT
T ss_pred CeEEEeCCcccCHHHHHHHhhhcC-CCeEEEc-CCCchHHHHHHHHhCc
Confidence 6899999999999999999999 9 6777655 4567899999999864
No 60
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=84.82 E-value=0.13 Score=56.57 Aligned_cols=19 Identities=53% Similarity=0.947 Sum_probs=17.8
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++|||.|+++++
T Consensus 336 ~VvLvGG~srip~v~~~l~ 354 (605)
T 2kho_A 336 DVILVGGQTRMPMVQKKVA 354 (605)
T ss_dssp EEEEESGGGGSHHHHHHHH
T ss_pred eEEEECCcccChHHHHHHH
Confidence 7999999999999999884
No 61
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=83.04 E-value=0.6 Score=48.05 Aligned_cols=46 Identities=39% Similarity=0.486 Sum_probs=28.8
Q ss_pred HHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 101 FEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 101 fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
++.++..+++.+.+.++++ .-..-..+ .|+||||++|||+|+++++
T Consensus 327 ~~~~~~~i~~~i~~~l~~~-~~~~~~i~---~VvLvGG~s~~p~l~~~l~ 372 (404)
T 3i33_A 327 NADLFRGTLEPVEKALRDA-KLDKGQIQ---EIVLVGGSTRIPKIQKLLQ 372 (404)
T ss_dssp THHHHHHTHHHHHHHHHHH-TCCGGGCC---EEEEESGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCHhhCC---EEEEECCccccHHHHHHHH
Confidence 3444444444444555443 21222234 7999999999999999885
No 62
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=82.94 E-value=3.8 Score=43.88 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=34.7
Q ss_pred cceEEEecCccccHHHHHHHHHhhC----CC--ccCCC---CCchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFN----GK--SLNLS---INPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~----~~--~~~~~---~~~deaVa~GAa~~a~ 244 (535)
...|+|+||+|.+|-+.++|++.+. .. ++..+ .++..++=+|++++|.
T Consensus 414 ~~nIvLsGGst~~pGf~~Rl~~El~~l~p~~~i~v~~~~~~~er~~s~WiGgsilas 470 (498)
T 3qb0_A 414 AHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILTTGHTIERQYQSWLGGSILTS 470 (498)
T ss_dssp HTTEEEESGGGGSTTHHHHHHHHHHHHSTTSCCCEECCSCTGGGGSHHHHHHHHHHT
T ss_pred hcCEEEeCCccCchhHHHHHHHHHHHhCCCCeeEEEcCCCCCccCccEEcccEEEec
Confidence 4689999999999999999986542 11 22222 3456888899998873
No 63
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=80.55 E-value=0.8 Score=46.76 Aligned_cols=48 Identities=33% Similarity=0.470 Sum_probs=31.5
Q ss_pred HHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 99 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 99 ~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
+-++.++..+++.+.+.++++--. ....+ .|+||||++|+|.|+++++
T Consensus 317 ~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~---~VvLvGG~s~~p~l~~~l~ 364 (394)
T 3qfu_A 317 ELNLDLFKKTLKPVEKVLQDSGLE-KKDVD---DIVLVGGSTRIPKVQQLLE 364 (394)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCC-GGGCC---EEEEESGGGGSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-HHHCC---EEEEECCccccHHHHHHHH
Confidence 344555555555555555554222 22334 7999999999999999885
No 64
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=78.64 E-value=0.64 Score=49.90 Aligned_cols=19 Identities=53% Similarity=0.976 Sum_probs=17.8
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++|||.|+++++
T Consensus 305 ~VvLvGG~s~~p~v~~~l~ 323 (509)
T 2v7y_A 305 KVILVGGSTRIPAVQEAIK 323 (509)
T ss_dssp EEEEESGGGGCHHHHHHHH
T ss_pred EEEEECCcccChHHHHHHH
Confidence 7999999999999999885
No 65
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=75.73 E-value=0.88 Score=46.43 Aligned_cols=19 Identities=53% Similarity=0.947 Sum_probs=17.7
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++++|.++++++
T Consensus 336 ~IvL~GG~s~~p~l~~~l~ 354 (383)
T 1dkg_D 336 DVILVGGQTRMPMVQKKVA 354 (383)
T ss_dssp EEEEESGGGGSHHHHHHHH
T ss_pred EEEEecCccccHHHHHHHH
Confidence 7999999999999999885
No 66
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=72.30 E-value=6 Score=38.63 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=37.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.+.|++.||.+..|.+.+.+++.+...++..+. .+.+.+.||++.+..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 6788999999887788888888877444455555 668899999988754
No 67
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=71.11 E-value=1.2 Score=44.81 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.5
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+||||++++|.++++++
T Consensus 280 ~IvL~GG~s~~p~l~~~l~ 298 (344)
T 1jce_A 280 GIFLTGGGSLLRGLDTLLQ 298 (344)
T ss_dssp CEEEESGGGCSBTHHHHHH
T ss_pred cEEEECccccchHHHHHHH
Confidence 6999999999999999875
No 68
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=69.73 E-value=15 Score=40.72 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=39.3
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCC---CCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL---SINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~---~~~~deaVa~GAa~~a~~ 245 (535)
.++.|+|.||.+.-..+++.|.+.+.+.++.. ..--|.++|+|.|+.|+.
T Consensus 599 g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~DnGiaLGQA~~a~~ 651 (657)
T 3ttc_A 599 GITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA 651 (657)
T ss_dssp TCCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 45699999999999999999999874333322 234589999999998864
No 69
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=68.43 E-value=3.6 Score=42.95 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHC-C-CCCCCccceeeeccccchhhhhhhhc
Q psy4003 100 RFEELCMDLFRQTLAPVERALNDA-K-LDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 100 ~fe~l~~~~~~~~~~~i~~~l~~a-~-~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
-++..++.+++.+...++..-... . .....+++|+||||+++||.++++++
T Consensus 297 ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~ 349 (419)
T 4a2a_A 297 IIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELAT 349 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHH
Confidence 344445555555555555543210 0 00123568999999999999988664
No 70
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=65.42 E-value=6.6 Score=39.66 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 100 RFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 100 ~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
.++..+..++..+...++..-.... ...++.|+|+||++++|.++++++
T Consensus 279 ~i~~~~~~i~~~i~~~l~~~~~~~~--~~~~~~IvL~GG~s~~p~l~~~l~ 327 (377)
T 2ych_A 279 AIRPVLVELTQELRRSLEFFRIQLE--EASPEVGYLLGGGSKLRGLASLLT 327 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----CCSEEEEESGGGGSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC--CCCcCEEEEECccccchhHHHHHH
Confidence 3444455555555555554322222 224669999999999999999874
No 71
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=65.34 E-value=11 Score=42.34 Aligned_cols=53 Identities=26% Similarity=0.309 Sum_probs=40.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhC--CCccCC---CCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNL---SINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~--~~~~~~---~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|+|.||.+.-..+++.|.+.+. +.++.. ..--|.++|+|+|+.|+....
T Consensus 693 g~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~DgGialGQA~~a~~~~~ 750 (761)
T 3vth_A 693 GINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANKILE 750 (761)
T ss_dssp CCCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSSGGGHHHHHHHHHHHHHT
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCchHHHHHHHHHHHHHhc
Confidence 35689999999999999999988863 222322 223589999999999875543
No 72
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=65.15 E-value=20 Score=34.64 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=32.5
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCC-----------CccCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNG-----------KSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~-----------~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.+.|+|-||.+..|.+.+.+++.+.. .++..+...+.+.++|||..+..
T Consensus 227 ~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 227 DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 677899988887666666655554411 12233334567899999988754
No 73
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=63.17 E-value=18 Score=35.82 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=33.6
Q ss_pred CcceEEEecCcccc-HHHHHHHHHhhC---------CCccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI-PKIQKMLQDFFN---------GKSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssri-P~v~~~l~~~f~---------~~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||.++. |.+.+.|++.+. ..++..+...+.+.++|||.++.
T Consensus 260 dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 260 DLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp CCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 67889999998876 555555544431 12344455667899999998863
No 74
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=62.00 E-value=2.6 Score=40.50 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.7
Q ss_pred ceeeeccccchhhhhhhhc
Q psy4003 132 DVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 132 ~i~lvGGs~riP~vq~~~~ 150 (535)
.|+|+||++++|.++++++
T Consensus 229 ~ivL~GG~a~~~~l~~~l~ 247 (272)
T 3h1q_A 229 PVYVVGGTAYLTGFSEEFS 247 (272)
T ss_dssp CEEEESGGGGSTTHHHHHH
T ss_pred EEEEECCccchhhHHHHHH
Confidence 4899999999999988774
No 75
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=60.69 E-value=27 Score=35.13 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=39.7
Q ss_pred CcceEEEecCccccHHHHHHHHHhhC--CCccCCC---CCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLS---INPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~--~~~~~~~---~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|+|.||.+.-..+++.|.+.+. +.++..+ .-.|.++++|+|.+.....|
T Consensus 249 g~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 249 GKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp TCSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 35789999999999999999998763 2233333 24689999999987655554
No 76
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=60.62 E-value=22 Score=35.57 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=38.5
Q ss_pred CcceEEEecCccccHHHHHHHHHhhC--CCccCCCC---CchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFN--GKSLNLSI---NPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~--~~~~~~~~---~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|+|.||...-..+++.|.+.+. +.++..+. -.|.++++|+|.+.....+
T Consensus 244 ~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~~ 301 (330)
T 2ivn_A 244 EKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKAG 301 (330)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHhcC
Confidence 45689999999999999999998762 23343332 3468899999876654433
No 77
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=58.59 E-value=20 Score=34.96 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=36.2
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCC-----ccCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGK-----SLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~-----~~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.+.|+|-||-+..|.+.+.|++.+... .+..+...+.|.++|||..+..
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 7788999999888777777777766321 2333445678999999988754
No 78
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=55.16 E-value=32 Score=33.93 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=31.2
Q ss_pred CcceEEEecCcccc-HH----HHHHHHHhhC------CCccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI-PK----IQKMLQDFFN------GKSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssri-P~----v~~~l~~~f~------~~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||.++. |+ +++.+++... ..++..+...+.|.++|||..+.
T Consensus 252 ~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l~~ 311 (321)
T 3vgl_A 252 DPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLAR 311 (321)
T ss_dssp CCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHHHH
Confidence 67889999988775 44 4444443321 11233444567999999998763
No 79
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=54.65 E-value=22 Score=35.25 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=32.9
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCC--------ccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGK--------SLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~--------~~~~~~~~deaVa~GAa~~a 243 (535)
+.+.|+|-||.+..+.+.+.|++.+... ++..+.-.+.+.++|||+.+
T Consensus 269 ~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 269 DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 6788999999888777777777665221 12223345689999999764
No 80
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=54.48 E-value=26 Score=39.53 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=38.8
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCcc--CCCC---CchhhHHhhHHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSL--NLSI---NPDEAVAYGAAVQAAIL 246 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~--~~~~---~~deaVa~GAa~~a~~l 246 (535)
.++.|.|.||...--.+++.|.+.+....+ ..+. .-|..+|.|+|++|+..
T Consensus 705 g~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALGQA~iA~~~ 760 (772)
T 4g9i_A 705 GVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVGQAFLGGLY 760 (772)
T ss_dssp TCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHHHHHHHHHH
T ss_pred CcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHHHHHHHHHH
Confidence 467899999999999999999998743333 2221 24899999999887653
No 81
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=53.36 E-value=9.9 Score=38.63 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=62.1
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
|+|++++ .++ .+ +...++...+||..++.+|.+++.+++. +.++. .. ..++ ... +
T Consensus 195 Ttd~~v~--~~~-~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~~-------~i~~-------g~~--~ 249 (355)
T 3js6_A 195 TTIIDTY--QNM-KR-VEEESFVINKGTIDFYKRIASHVSKKSE---GASIT--PR-------MIEK-------GLE--Y 249 (355)
T ss_dssp CEEEEEE--ETT-EE-CGGGCEEESCCHHHHHHHHHHHTC-----------C--HH-------HHHS-------CCC---
T ss_pred cEEEEEE--cCC-EE-ccccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--HH-------HHhc-------CCc--c
Confidence 6676666 233 11 1112334579999999999999887642 11111 10 1111 000 1
Q ss_pred EEecccCCee--eEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhh--hhhhhc
Q psy4003 82 EIDALHEGID--FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK--IQKMLQ 150 (535)
Q Consensus 82 ~i~~~~~~~~--~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~--vq~~~~ 150 (535)
. ..+.+ -.+.++ +.+++.++++++++...+++.+.+ ++.++.|+|+||++.++. ++++++
T Consensus 250 ~----~~~~~~~k~~di~-~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~ 313 (355)
T 3js6_A 250 K----QCKLNQKTVIDFK-DEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYS 313 (355)
T ss_dssp ----------------CH-HHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSS
T ss_pred c----cccccccccccHH-HHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHH
Confidence 0 01111 112232 356777788888888887777654 466789999999999997 666655
No 82
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=53.26 E-value=19 Score=34.77 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=32.6
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCC------ccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGK------SLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~------~~~~~~~~deaVa~GAa~~a 243 (535)
+.+.|++-||.+..|.+.+.+++.+... ++..+...+.+.++|||+.+
T Consensus 233 ~p~~ivlgG~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 233 DCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp CCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhcCccCCEEEECCCCCchHHHHHHHHH
Confidence 5678888888776677777777766321 22233345678999999876
No 83
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=52.87 E-value=29 Score=33.89 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=32.4
Q ss_pred CcceEEEecCccc-cHHHHHHHHHhhCC---------CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIR-IPKIQKMLQDFFNG---------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssr-iP~v~~~l~~~f~~---------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|.||.+. .|.+.+.+++.+.. .++..+...+.+.++|||+.+.
T Consensus 262 ~p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~ 320 (326)
T 2qm1_A 262 NPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLAL 320 (326)
T ss_dssp CCSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGG
T ss_pred CCCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHH
Confidence 5678999998876 56666666655521 1223333466789999998764
No 84
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=52.63 E-value=5.6 Score=44.18 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=30.8
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcc
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAK 191 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (535)
++...+||++|+++|++++.++..+++++|.+++
T Consensus 296 ~~~~~itr~~fe~l~~~l~~~i~~~i~~~L~~a~ 329 (675)
T 3d2f_A 296 DVSSQLSREELEELVKPLLERVTEPVTKALAQAK 329 (675)
T ss_dssp CEEEEEEHHHHHHHTHHHHTTTTHHHHHHHHHHT
T ss_pred eEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556889999999999999999999999999885
No 85
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=49.97 E-value=7.7 Score=41.91 Aligned_cols=34 Identities=76% Similarity=1.126 Sum_probs=30.5
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhHHHHHhhhcc
Q psy4003 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAK 191 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (535)
++...+||++|++++++++.++..+++++|.+++
T Consensus 292 ~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~a~ 325 (554)
T 1yuw_A 292 DFYTSITRARFEELNADLFRGTLDPVEKALRDAK 325 (554)
T ss_dssp CEEEEEEHHHHHHHTHHHHHHTTHHHHHHHHHTT
T ss_pred eEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556889999999999999999999999999875
No 86
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=48.54 E-value=5.9 Score=38.25 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=66.9
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCCceeE
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASL 81 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~~~~i 81 (535)
+++++++. .+| .+.+...+++...||.+|+..+++++.-.+...... .+..... .
T Consensus 104 ~~~~~~~~-~~g-~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~~~~---------------------~~~a~~~--~ 158 (276)
T 4ehu_A 104 DAKVLKLD-NNG-RLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGSI---------------------SMNSQNE--V 158 (276)
T ss_dssp CEEEEEEC-TTS-CEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGHHHH---------------------HTTCSSC--C
T ss_pred CceEEEEE-ecC-ceEEEEeCCCcCcchhhHHHHHHHHhccChhhhHHH---------------------HhcCCCC--C
Confidence 56666663 456 788889999999999999999998875443221110 0000000 0
Q ss_pred EEeccc----CCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 82 EIDALH----EGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 82 ~i~~~~----~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
.+.... ...-..........+++++.+...+...+.....+.. .++.|+|+||++++|.+++.++
T Consensus 159 ~i~~~~~~f~~s~~~~~~~~~~~~~di~a~~~~~v~~~l~~~~~~~~----~~~~vvl~GGva~n~~lr~~l~ 227 (276)
T 4ehu_A 159 SISSTCTVFAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKRIG----VQRNVVMVGGVARNSGIVRAMA 227 (276)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHC----CCSSEEEESGGGGCHHHHHHHH
T ss_pred CcCCccchhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhcc----cCCeEEEecCccchHHHHHHHH
Confidence 000000 0000000000011345666666655555544444432 3567999999999999999875
No 87
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=48.42 E-value=33 Score=33.52 Aligned_cols=49 Identities=27% Similarity=0.174 Sum_probs=30.8
Q ss_pred CcceEEEecCcc-cc-HHHHHHHHHhhCC-------CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSI-RI-PKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGss-ri-P~v~~~l~~~f~~-------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||.+ .. |.+.+.|++.+.. ..+..+.-.+.+.++|||+.+.
T Consensus 237 ~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 237 DPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp CCSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 678888888877 43 5444444444311 1233344567899999998875
No 88
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=47.95 E-value=61 Score=35.19 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=40.9
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccCC-CCCchhhHHhhHHHHHHHHhC
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNL-SINPDEAVAYGAAVQAAILSG 248 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~~-~~~~deaVa~GAa~~a~~l~~ 248 (535)
.++.|.|.||.+.--.+++.|.+..+-..+.. ..-.|.++++|+|+++....|
T Consensus 307 g~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~a~~~~g 360 (576)
T 3ven_A 307 GERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAAVAVELG 360 (576)
T ss_dssp TCSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHHHHHHTT
T ss_pred CCCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHHHHHHcC
Confidence 56799999999999999999987652223322 235689999999999987765
No 89
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=47.77 E-value=10 Score=40.86 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=35.5
Q ss_pred cceEEEecCccccHHHHHHHHHhhCC------------CccCC---CCCchhhHHhhHHHHHH
Q psy4003 197 IHDVVLVGGSIRIPKIQKMLQDFFNG------------KSLNL---SINPDEAVAYGAAVQAA 244 (535)
Q Consensus 197 i~~V~LvGGssriP~v~~~l~~~f~~------------~~~~~---~~~~deaVa~GAa~~a~ 244 (535)
...|+|+||+|.+|-+.++|.+.+.. .++.. ..++..++=+||+++|.
T Consensus 501 ~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilas 563 (593)
T 4fo0_A 501 YSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLAC 563 (593)
T ss_dssp HHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHH
T ss_pred hCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhc
Confidence 56899999999999999888765421 11221 24677889999999984
No 90
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=43.37 E-value=7 Score=40.25 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=30.5
Q ss_pred HhHHHHHHHHHHCC--CCCCCccceeeeccccchhhhhhhhc
Q psy4003 111 QTLAPVERALNDAK--LDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 111 ~~~~~i~~~l~~a~--~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
.+...+.+++.... +.++-++.|+||||+|++|-++++++
T Consensus 295 ~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~ 336 (418)
T 1k8k_A 295 PISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQ 336 (418)
T ss_dssp CHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHH
Confidence 35566777777654 33445678999999999999999885
No 91
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=42.64 E-value=63 Score=32.61 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=31.3
Q ss_pred CcceEEEecCcccc-HHHHHHHHHhhCC-------CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI-PKIQKMLQDFFNG-------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssri-P~v~~~l~~~f~~-------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||.+.. |.+.+.+++.+.. .++..+...+.+.+.|||..+.
T Consensus 314 dP~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 314 GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCCEEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Confidence 67788988888764 6666666554421 1222233455789999998764
No 92
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=42.23 E-value=69 Score=32.78 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=34.9
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccC----CCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN----LSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~----~~~~~deaVa~GAa~~a~~ 245 (535)
.++.|++.||+.+-|.+-++|++.+++..+. ..+++|.-=|..-|++|..
T Consensus 283 ~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aFA~LA~~ 336 (371)
T 3qbx_A 283 DCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHR 336 (371)
T ss_dssp TCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHHHHHHHH
Confidence 4678999999999999999999999644332 2345553334445566543
No 93
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Probab=39.73 E-value=27 Score=34.20 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=36.3
Q ss_pred HHHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC
Q psy4003 174 DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
.........++++|.++|+.+.||+.|+.-|+++++ -+.+.+.|+
T Consensus 215 ~~~~~~~~~i~~aL~~agl~~~did~v~~H~~~~~~---~d~i~~~lg 259 (317)
T 1hnj_A 215 VAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRI---ISATAKKLG 259 (317)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGCCEEEECCSCHHH---HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHcC
Confidence 334455677899999999999999999999998765 357888884
No 94
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=38.82 E-value=9.8 Score=38.63 Aligned_cols=121 Identities=22% Similarity=0.247 Sum_probs=70.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHH---------HHHHHHhccCCceeEEEecccCCeee
Q psy4003 22 AGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTAC---------ERAKRTLSSSTEASLEIDALHEGIDF 92 (535)
Q Consensus 22 ~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------e~aK~~LS~~~~~~i~i~~~~~~~~~ 92 (535)
.+...+||++||+.|.+++..+. +......+.....+|+..+ +..|..++......+.++ +| .
T Consensus 175 ~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lp---dg--~ 246 (375)
T 2fxu_A 175 IMRLDLAGRDLTDYLMKILTERG---YSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP---DG--Q 246 (375)
T ss_dssp CEEESCCHHHHHHHHHHHHHHHT---CCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---TS--C
T ss_pred eEEeccCHHHHHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECC---CC--C
Confidence 34578999999999999998762 1111111222233333322 222333333333444443 34 3
Q ss_pred EEEeCHHHHH---HHhhHH-----HHHhHHHHHHHHHHCCC--CCCCccceeeeccccchhhhhhhhc
Q psy4003 93 YSKITRARFE---ELCMDL-----FRQTLAPVERALNDAKL--DKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 93 ~~~ltr~~fe---~l~~~~-----~~~~~~~i~~~l~~a~~--~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
.++++++.|+ .+..|. ...+...+.+++..... .+.-++.|+|+||+|++|-+.++++
T Consensus 247 ~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~ 314 (375)
T 2fxu_A 247 VITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQ 314 (375)
T ss_dssp EEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHH
T ss_pred EEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHH
Confidence 4678888773 233332 23466777777776532 2233467999999999999999874
No 95
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=38.25 E-value=14 Score=37.23 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 98 RARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 98 r~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
++.+++++..+++.+...+++..... + +|+||||+++| ++++++
T Consensus 272 ~~~i~~~~~~i~~~i~~~l~~~~~~i----~---~IvL~GGga~l--l~~~l~ 315 (346)
T 2fsj_A 272 GPILEDLANRIIENIRLNLRGEVDRV----T---SLIPVGGGSNL--IGDRFE 315 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGE----E---EEEEESTTHHH--HGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc----c---EEEEECCcHHH--HHHHHH
Confidence 45556666666666666555443332 1 69999999999 777765
No 96
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=35.28 E-value=58 Score=32.74 Aligned_cols=50 Identities=12% Similarity=-0.082 Sum_probs=29.2
Q ss_pred CcceEEEecC-ccccH------HHHHHHHHhhCCCc-----------cCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGG-SIRIP------KIQKMLQDFFNGKS-----------LNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGG-ssriP------~v~~~l~~~f~~~~-----------~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.+.|+|.|| .++.+ .+++.+++.|.... +......+.+.++|||.++..
T Consensus 304 ~p~~IvlgGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~l~GAa~l~~~ 371 (373)
T 2q2r_A 304 LPLTIVLVGDNIVNNAFFYRNPQNLKEMHHEALNHEMERFGFQSRVSYLRQKKLLNLNLMGCYRCGLD 371 (373)
T ss_dssp CCSEEEECSHHHHHTHHHHHSHHHHHHHHHHHTCSGGGGGTSGGGCEEEEECSCCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCChHhCchhhhcchhHHHHHHHHHhhcccchhhhhcCCcEEEEecCCchhHHHHHHHHHh
Confidence 5667777788 55544 34446665542211 112224457899999988753
No 97
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2
Probab=35.02 E-value=33 Score=33.58 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC
Q psy4003 175 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
........++++|.++|+.+.||+.|+.-|+++++ -+.+.+.|+
T Consensus 218 ~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~---~d~~~~~lg 261 (322)
T 1ub7_A 218 AVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRI---IDAARERLG 261 (322)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHH---HHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHcC
Confidence 33455667889999999999999999999998765 356778884
No 98
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}
Probab=35.00 E-value=33 Score=33.24 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC
Q psy4003 176 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
.......++++|.++|+.+.||+.|++-|+++++- +.+.+.|+
T Consensus 209 ~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~~---~~~~~~lg 251 (309)
T 2ebd_A 209 VRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRII---NALAEKLN 251 (309)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHHH---HHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHH---HHHHHHhC
Confidence 34556678899999999999999999999987753 46777784
No 99
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A
Probab=34.74 E-value=38 Score=32.97 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC
Q psy4003 175 LFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
........++++|.++|+.+.||+.|++-++++++- +.+.+.|+
T Consensus 210 ~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~~---d~~~~~lg 253 (313)
T 1zow_A 210 AVRIMGDASTRVVEKANLTSDDIDLFIPHQANIRIM---ESARERLG 253 (313)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHH---HHHHHHhC
Confidence 344556678899999999999999999999987654 55677774
No 100
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=34.73 E-value=15 Score=36.21 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=69.3
Q ss_pred ceEEEEEEEeCCCeEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHH-HHH-hccCCce
Q psy4003 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERA-KRT-LSSSTEA 79 (535)
Q Consensus 2 T~DvSvv~~~~~~~~~vl~~~g~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~a-K~~-LS~~~~~ 79 (535)
|+|+++++ +| .+.+.+++|+..+||.+||+.|++++.++ +.++. . ..+|++ |.. +......
T Consensus 175 ttd~~v~~--~g-~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i~--~-------~~ae~~lk~~~~~~~~~~ 237 (320)
T 2zgy_A 175 TLDISQVM--GK-LSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKGS--S-------YLADDIIIHRKDNNYLKQ 237 (320)
T ss_dssp CEEEEEEE--GG-GCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGGG--H-------HHHHHHHHTTTCHHHHHH
T ss_pred eEEEEEEe--CC-eeEEeeecCCccccHHHHHHHHHHHHHHc-----CCCCC--H-------HHHHHHHHHhhhhhcccc
Confidence 88999987 45 55677778888999999999999988642 22221 1 122333 221 0000000
Q ss_pred eEEEecccCCeeeEEEeCHHHHHHHhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 80 SLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 80 ~i~i~~~~~~~~~~~~ltr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
.+. ..-.++++.+++.+.++.+...+.+.+++. ..++.|+||||++++ ++++++
T Consensus 238 ~i~-----------~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga~l--l~~~l~ 291 (320)
T 2zgy_A 238 RIN-----------DENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGAEL--ICDAVK 291 (320)
T ss_dssp HSS-----------SSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTHHH--HHHHHH
T ss_pred eec-----------CchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChHHH--HHHHHH
Confidence 000 011345555666666666666666666552 457899999999998 666654
No 101
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=34.47 E-value=22 Score=34.98 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=27.6
Q ss_pred CcceEEEecCcccc-HHHHHHHHHhhCC--------CccCCCCCchhhHHhhHHHHH
Q psy4003 196 SIHDVVLVGGSIRI-PKIQKMLQDFFNG--------KSLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 196 ~i~~V~LvGGssri-P~v~~~l~~~f~~--------~~~~~~~~~deaVa~GAa~~a 243 (535)
+.+.|+|-||.+.. +++.+ +++.+.. .++..+...+.+.++|||++|
T Consensus 269 ~p~~IvlgG~i~~~~~~~~~-l~~~l~~~~~~~~~~~~i~~s~~~~~a~~~GAa~la 324 (327)
T 2ap1_A 269 DPDLLVIGGGLSNFTAITTQ-LAERLPRHLLPVARAPRIERARHGDAGGMRGAAFLH 324 (327)
T ss_dssp CCSEEEEESGGGGSTHHHHS-SGGGSGGGSCTTCCCCEEEECSCTTTHHHHHHHHTT
T ss_pred CCCEEEEeChhhcchhHHHH-HHHHHHHhhccccCCCEEEEcCCCCcHHHHHHHHHH
Confidence 56778888887763 44444 5554421 111223334578899999764
No 102
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=32.46 E-value=85 Score=32.10 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=34.0
Q ss_pred CcceEEEecCccccHHHHHHHHHhhCCCccC----CCCCch--hhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRIPKIQKMLQDFFNGKSLN----LSINPD--EAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssriP~v~~~l~~~f~~~~~~----~~~~~d--eaVa~GAa~~a~ 244 (535)
..+.|++.||+.+-|.+-++|++.+++.++. ..+++| ||+|. |++|.
T Consensus 289 ~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t~~~Gi~~d~~EA~aF--A~LA~ 341 (370)
T 3cqy_A 289 QEGELFVCGGGAFNAELMQRLAALLPGYRIDTTSALGVDPKWAEGIAF--AWLAM 341 (370)
T ss_dssp SSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEGGGGTCCTTTHHHHHH--HHHHH
T ss_pred CCCEEEEECCCcCCHHHHHHHHHhCCCCeeeeHHHhCCChhHHHHHHH--HHHHH
Confidence 4568999999999999999999999653332 234555 66655 55554
No 103
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=32.32 E-value=1.2e+02 Score=29.64 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=34.0
Q ss_pred CcceEEEecCcccc-----HHHHHHHHHhhCC------CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI-----PKIQKMLQDFFNG------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssri-----P~v~~~l~~~f~~------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||-++. +.+++.+++.+.. .++..+.-.+.|.++|||..+.
T Consensus 239 dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~ 298 (310)
T 3htv_A 239 DPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAH 298 (310)
T ss_dssp CCSEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHH
T ss_pred CCCEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHH
Confidence 77889998887765 5678888776521 1222233457899999998874
No 104
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2
Probab=32.19 E-value=44 Score=33.08 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=34.5
Q ss_pred HHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC
Q psy4003 176 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
.......++++|.++|+.+.||+.|+.-|+++++- +.+.+.|+
T Consensus 230 ~~~~~~~i~~aL~~agl~~~did~v~~H~~~~~~~---d~i~~~lg 272 (339)
T 1mzj_A 230 VADVVPAAREALEVAGLTVGDLVAFVPHQANLRII---DVLVDRLG 272 (339)
T ss_dssp HHHHHHHHHHHHHTTTCCGGGCSEEEECCSCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH---HHHHHHhC
Confidence 34455678899999999999999999999987653 56777774
No 105
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=31.57 E-value=98 Score=30.47 Aligned_cols=49 Identities=16% Similarity=0.055 Sum_probs=26.1
Q ss_pred CcceEEEecCccc--cHHHHHHHHHhhC----CCccCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIR--IPKIQKMLQDFFN----GKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssr--iP~v~~~l~~~f~----~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.+.|+|-||.+. ++.+++.+++... ..++..+.. ..+.++|||..+..
T Consensus 284 ~P~~IvlgG~i~~~~~~~l~~~l~~~~~~~~~~~~i~~s~~-~~~~~~GAa~l~~~ 338 (343)
T 2yhw_A 284 NPSLVILSGVLASHYIHIVKDVIRQQALSSVQDVDVVVSDL-VDPALLGAASMVLD 338 (343)
T ss_dssp CCSEEEEESTTHHHHHHHHHHHHHHHSCGGGTTCEEEECCC-SCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHhcccccCCcEEEEccC-CCchHHHHHHHHHH
Confidence 6677888887653 2334444443321 112222222 34678999987753
No 106
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=31.36 E-value=76 Score=31.00 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=33.3
Q ss_pred CcceEEEecCcccc----HHHHHHHHHhhCC------------CccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI----PKIQKMLQDFFNG------------KSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssri----P~v~~~l~~~f~~------------~~~~~~~~~deaVa~GAa~~a~ 244 (535)
|.+.|++-||-++. |.+++.+.+.... ..+..+.-.+.|.++|||.++.
T Consensus 224 dPe~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~l~~ 288 (302)
T 3epq_A 224 APXXIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAH 288 (302)
T ss_dssp CCSCEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHHH
T ss_pred CchhhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHHHHHHHHH
Confidence 78889998887764 5666777665411 0133344567899999998874
No 107
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}
Probab=29.42 E-value=48 Score=32.64 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=33.9
Q ss_pred HhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC
Q psy4003 177 RQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
......++++|.++|+.+.||+.|+.-++++++- +.+.+.|+
T Consensus 224 ~~~~~~i~~aL~~agl~~~did~~~~H~~~~~~~---d~~~~~lg 265 (331)
T 2x3e_A 224 TQMSDSVRRVLDRVGWQASDLHHLVPHQANTRIL---AAVADQLD 265 (331)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEECCCCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHH---HHHHHHcC
Confidence 4455668899999999999999999999987653 55777774
No 108
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A
Probab=28.84 E-value=60 Score=33.10 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCc-cccHHHHHHHHHhhC
Q psy4003 165 RARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFN 221 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGs-sriP~v~~~l~~~f~ 221 (535)
.++.+.+.+....-...-+++||.++|+++.+||.|++...+ ..+|..-..|...+|
T Consensus 86 ~~r~~~~~~~~~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~p~~a~~v~~~LG 143 (387)
T 3oit_A 86 DARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHVPGVDFRLVPLLG 143 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSCCEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCCCCcccHHHHHHHHhC
Confidence 456666667777777888899999999999999998875432 246777778888884
No 109
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=27.49 E-value=77 Score=32.14 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=30.4
Q ss_pred CcceEEEecCccc-cHHHHHHHHHhhC---------CCccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIR-IPKIQKMLQDFFN---------GKSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssr-iP~v~~~l~~~f~---------~~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||.+. .|.+.+.+++.+. ..++..+...+.+.++|||+...
T Consensus 334 dP~~IvlgG~i~~~~~~l~~~i~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~~~~ 392 (406)
T 1z6r_A 334 NPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKD 392 (406)
T ss_dssp CCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCCCCTTTTHHHHHHH
T ss_pred CCCEEEEeCccchhhHHHHHHHHHHHHHhcccccCCCcEEEEeCCCChHHHHHHHHHHH
Confidence 6778888888775 3555555554431 12233344556889999987643
No 110
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Probab=27.17 E-value=56 Score=32.04 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=33.9
Q ss_pred HHhhhhHHHHHhhhcccCCCCcceEEEecCccccHHHHHHHHHhhC
Q psy4003 176 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221 (535)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGssriP~v~~~l~~~f~ 221 (535)
.......++++|.++|+.+.|||.+++-++++++. +.+.+.|+
T Consensus 231 ~~~~~~~i~~al~~agl~~~dId~~~~H~~~~~~~---~~~~~~lg 273 (335)
T 1u6e_A 231 AFKMGDVGRRAMDAAGVRPDQIDVFVPHQANSRIN---ELLVKNLQ 273 (335)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEECCSCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH---HHHHHHcC
Confidence 34555678899999999999999999999987754 44666663
No 111
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A
Probab=26.59 E-value=60 Score=33.16 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=69.3
Q ss_pred EeCHHHHHHHhhHH-----HHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhcCCCccc---c---cchhhh
Q psy4003 95 KITRARFEELCMDL-----FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIF---R---DFYSKI 163 (535)
Q Consensus 95 ~ltr~~fe~l~~~~-----~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~~~~~~~---~---~~~~~~ 163 (535)
.++.++|.+....+ ..++...++...+..|+... ++-.|+++. . +++..-
T Consensus 30 ~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R-------------------~~~~~~e~~~~~~~~~~~~~p~ 90 (393)
T 3ov2_A 30 LYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKR-------------------YLHLTEEILKERPKLCSYKEAS 90 (393)
T ss_dssp EEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEE-------------------ECSCCHHHHHHSGGGGSSSSCC
T ss_pred ccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceE-------------------EeecChhhhccCcccccCCCCC
Confidence 57778887764322 13455667777888888643 222222210 0 111111
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCc-cccHHHHHHHHHhhC
Q psy4003 164 TRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFN 221 (535)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGs-sriP~v~~~l~~~f~ 221 (535)
..++.+.+.+....-...-+++||.++|+++.+||.|++...+ ..+|..-..|...+|
T Consensus 91 ~~~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId~vi~~t~t~~~~p~~a~~v~~~LG 149 (393)
T 3ov2_A 91 FDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSISGIDMPGADYRLATLLG 149 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSCCCBSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCCCCCCCHHHHHHHHcC
Confidence 3556666777777778888899999999999999998875432 346777788888884
No 112
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2
Probab=26.39 E-value=71 Score=31.52 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=37.4
Q ss_pred HHHhHHHHHHHHHHCCCCCCCccceeeeccccch-hhhhhhhcCCCc
Q psy4003 109 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRI-PKIQKMLQIPPL 154 (535)
Q Consensus 109 ~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~ri-P~vq~~~~~~~~ 154 (535)
.+.....++++|+++++++++|+.|+..|+++++ -.+.+.++.|++
T Consensus 230 ~~~~~~~i~~aL~~agl~~~did~v~~H~~~~~~~d~i~~~lg~~~~ 276 (339)
T 1mzj_A 230 VADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVPEH 276 (339)
T ss_dssp HHHHHHHHHHHHHTTTCCGGGCSEEEECCSCHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCCCcc
Confidence 3556778999999999999999999999999875 456667776554
No 113
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=26.38 E-value=35 Score=33.68 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=27.5
Q ss_pred eEEEecCcccc-HHHHHHHHHhhCCC----------ccCCCCCchhhHHhhHHHHHHHH
Q psy4003 199 DVVLVGGSIRI-PKIQKMLQDFFNGK----------SLNLSINPDEAVAYGAAVQAAIL 246 (535)
Q Consensus 199 ~V~LvGGssri-P~v~~~l~~~f~~~----------~~~~~~~~deaVa~GAa~~a~~l 246 (535)
.|+|.||-+.. |.+.+.+++.+... ++......+ +.+.|||+.+...
T Consensus 268 ~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~-a~~~GAa~la~~~ 325 (347)
T 2ch5_A 268 PILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRH-SSALGGASLGARH 325 (347)
T ss_dssp EEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEESS-CTHHHHHHHHHHT
T ss_pred eEEEECCcccCcHHHHHHHHHHHHhhccccccccCCceEEEecCC-ChHHHHHHHHHHh
Confidence 78888887753 66666665554211 111122234 8999999887543
No 114
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=25.87 E-value=59 Score=33.01 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=33.2
Q ss_pred CCcceEEEecCccccHH-HHHHHHHhhCCC---ccCCCCCchhhHHhhHHHHH
Q psy4003 195 GSIHDVVLVGGSIRIPK-IQKMLQDFFNGK---SLNLSINPDEAVAYGAAVQA 243 (535)
Q Consensus 195 ~~i~~V~LvGGssriP~-v~~~l~~~f~~~---~~~~~~~~deaVa~GAa~~a 243 (535)
++++.|+|.||.+..+. +.+.+++.+... .+..+...+.+.+.||+..+
T Consensus 294 ~~p~~IvlgGgi~~~~~~l~~~i~~~l~~~~~~~i~~~~~~~~a~~~GAa~l~ 346 (381)
T 1saz_A 294 GEVDFIVLTGGLAHEKEFLVPWITKRVSFIAPVLVFPGSNEEKALALSALRVL 346 (381)
T ss_dssp TCCSEEEEEEGGGGCTTTHHHHHHHHHTTTSCEEEEEBCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCccChHHHHHHHHHHHHhhcCeEEEecCcchhHHHHHHHHHH
Confidence 47899999999886543 677777776321 22223334469999999876
No 115
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.57 E-value=1.1e+02 Score=31.19 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=28.1
Q ss_pred CcceEEEecCcccc-HHHHHHHHHhhC---------CCccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI-PKIQKMLQDFFN---------GKSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssri-P~v~~~l~~~f~---------~~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|-||.+.. |.+.+.+++.+. ..++..+.-.+. .++|||..+.
T Consensus 357 dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~I~~s~l~~~-~~~GAa~l~~ 414 (429)
T 1z05_A 357 NPEKILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFYKQ-ATMPGAALIK 414 (429)
T ss_dssp CCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCSSC-TTHHHHHHHH
T ss_pred CCCEEEEeCccccchHHHHHHHHHHHHHhcccccCCCcEEEEecCCCc-cHHHHHHHHH
Confidence 67788888888763 444444444331 122333333445 8999998764
No 116
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=25.25 E-value=28 Score=33.75 Aligned_cols=45 Identities=7% Similarity=-0.099 Sum_probs=32.2
Q ss_pred CcceEEEecCcccc--HHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHDVVLVGGSIRI--PKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~V~LvGGssri--P~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.+.|+|.||-++. |.+++.+++.. .++ ..|..+...||+.+|..
T Consensus 234 ~p~~vvlgGGv~~~~~~~l~~~l~~~~--~~i---~~~~~a~~~GA~~la~~ 280 (291)
T 1zbs_A 234 PDLPLHFIGSVAFHYREVLSSVIKKRG--LTL---GSVLQSPMEGLIQYHHN 280 (291)
T ss_dssp TTSCEEEESHHHHHTHHHHHHHHHHTT--CCE---EEEESCSHHHHHHHHHH
T ss_pred CCceEEEECchHHhhHHHHHHHHHHcC--Cee---cccCcCHHHHHHHHHHh
Confidence 67789999998776 66777766643 112 23668999999999854
No 117
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=25.01 E-value=74 Score=33.43 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.0
Q ss_pred Cccceeeeccccchhhhhhhhc
Q psy4003 129 SIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 129 ~~~~i~lvGGs~riP~vq~~~~ 150 (535)
.+..|+++||.+|.|+..|++.
T Consensus 393 ~~~~i~~~GG~a~s~~~~Qi~A 414 (497)
T 2zf5_O 393 QIKELRVDGGATANDFLMQFQA 414 (497)
T ss_dssp CCCCEEEESGGGGCHHHHHHHH
T ss_pred CcceEEEeCccccCHHHHHHHH
Confidence 4568999999999999999774
No 118
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis}
Probab=24.42 E-value=46 Score=34.50 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=35.4
Q ss_pred hhhHHHHHhhhcccCCCCcceEEEecCcccc--HHHHHHHHHhhCCC
Q psy4003 179 TLAPVERALNDAKLDKGSIHDVVLVGGSIRI--PKIQKMLQDFFNGK 223 (535)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~i~~V~LvGGssri--P~v~~~l~~~f~~~ 223 (535)
....++++|+++|+.+.||+.|++-|-++.+ |.=.+.|...|++.
T Consensus 304 ~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D~~E~~al~~~fg~~ 350 (434)
T 2gp6_A 304 AGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGN 350 (434)
T ss_dssp HHHHHHHHHHHTTCCTTTEEEEECCCCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEeCCcCccchHHHHHHHHHHhccC
Confidence 3456788999999999999999999766655 55566778889543
No 119
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}
Probab=24.13 E-value=74 Score=31.25 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=36.9
Q ss_pred HHHhHHHHHHHHHHCCCCCCCccceeeeccccch-hhhhhhhcCCC
Q psy4003 109 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRI-PKIQKMLQIPP 153 (535)
Q Consensus 109 ~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~ri-P~vq~~~~~~~ 153 (535)
.+.+...++++|+++++++++|+.++..++++++ -.+.+.++.|+
T Consensus 223 ~~~~~~~i~~aL~~agl~~~did~~~~H~~~~~~~d~~~~~lg~~~ 268 (331)
T 2x3e_A 223 VTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVADQLDLPV 268 (331)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECCCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHcCCCH
Confidence 3556778899999999999999999999999975 45666777654
No 120
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}
Probab=24.05 E-value=72 Score=30.76 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=36.5
Q ss_pred HHHhHHHHHHHHHHCCCCCCCccceeeeccccch-hhhhhhhcCCC
Q psy4003 109 FRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRI-PKIQKMLQIPP 153 (535)
Q Consensus 109 ~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~ri-P~vq~~~~~~~ 153 (535)
.+.....++++++++++++++|+.|...|+.+++ -.+.+.++.|+
T Consensus 209 ~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~~~~~~~~lg~~~ 254 (309)
T 2ebd_A 209 VRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINALAEKLNIPK 254 (309)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHhCCCH
Confidence 4466778999999999999999999999999874 45666676654
No 121
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Probab=23.77 E-value=37 Score=34.69 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=33.3
Q ss_pred hhHHHHHhhhcccCCCCcceEEEecCcccc--HHHHHHHHHhhC
Q psy4003 180 LAPVERALNDAKLDKGSIHDVVLVGGSIRI--PKIQKMLQDFFN 221 (535)
Q Consensus 180 ~~~~~~~l~~~~~~~~~i~~V~LvGGssri--P~v~~~l~~~f~ 221 (535)
...++++|.++|+.+.||+.|++-|.++.+ |.--..+.+.|+
T Consensus 278 ~~ai~~al~~Agl~~~dId~ve~Hgtgt~~gD~~E~~al~~~~g 321 (408)
T 1j3n_A 278 ALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFG 321 (408)
T ss_dssp HHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHcCEEEEeCCcCcccCHHHHHHHHHHhc
Confidence 445788999999999999999999999875 334455666663
No 122
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=23.64 E-value=39 Score=32.94 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=29.0
Q ss_pred CcceEEEecCccc--cHHHHHHHHHhhCCCccCCCCCchhhHHhhHHHHHH
Q psy4003 196 SIHDVVLVGGSIR--IPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAA 244 (535)
Q Consensus 196 ~i~~V~LvGGssr--iP~v~~~l~~~f~~~~~~~~~~~deaVa~GAa~~a~ 244 (535)
+.+.|+|.||-+. .|.+.+.+++.+ ..|+.+.+.||+++|.
T Consensus 250 ~p~~VvlgGgv~~~~~~~l~~~l~~~i--------~~~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 250 DELPVALCGGLGQALRDWLPPGFRQRL--------VAPQGDSAQGALLLLQ 292 (305)
T ss_dssp CCSCEEEESHHHHHTGGGSCHHHHHHC--------CCCSSCHHHHHHHHTC
T ss_pred CCCeEEEECCchHhHHHHHHHHHHhhc--------cCCCCCHHHHHHHHHh
Confidence 6778999888764 456666666643 1256788999998863
No 123
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}
Probab=22.76 E-value=53 Score=32.61 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=35.3
Q ss_pred hhhHHHHHhhhcccCCCCcceEEEecCcc--ccHHHHHHHHHhhC
Q psy4003 179 TLAPVERALNDAKLDKGSIHDVVLVGGSI--RIPKIQKMLQDFFN 221 (535)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~i~~V~LvGGss--riP~v~~~l~~~f~ 221 (535)
...-+++||.++|+++.+||.|+++.-+. .+|-.--.|...+|
T Consensus 66 a~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~~P~~a~~v~~~LG 110 (350)
T 4ewp_A 66 AVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIG 110 (350)
T ss_dssp HHHHHHHHHHHTTCCGGGCSEEEEECSCCSCSSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCCchHHHHHHHhC
Confidence 34567889999999999999998876553 57888888988884
No 124
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=22.55 E-value=26 Score=35.75 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=66.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHhccCC----------------ceeEEEeccc
Q psy4003 24 DTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSST----------------EASLEIDALH 87 (535)
Q Consensus 24 ~~~lGG~dfD~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~aK~~LS~~~----------------~~~i~i~~~~ 87 (535)
...+||+++|..|.+++..+. +......+. ..+|..|+.++... ...+.+ .
T Consensus 181 ~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~~-------~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~l---p 247 (394)
T 1k8k_B 181 RLDIAGRDITRYLIKLLLLRG---YAFNHSADF-------ETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTL---P 247 (394)
T ss_dssp EESCCHHHHHHHHHHHHHHTT---CCCCTTTTH-------HHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEEC---T
T ss_pred EeeccHHHHHHHHHHHHHhcC---CCCCcHHHH-------HHHHHHHHhheeEecCHHHHHHhhccCCcCceEEEC---C
Confidence 457999999999999987641 111111111 23455555544321 122222 2
Q ss_pred CCeeeEEEeCHHHHHHHhhHHH---------HHhHHHHHHHHHHCCCC--CCCccceeeeccccchhhhhhhhc
Q psy4003 88 EGIDFYSKITRARFEELCMDLF---------RQTLAPVERALNDAKLD--KGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 88 ~~~~~~~~ltr~~fe~l~~~~~---------~~~~~~i~~~l~~a~~~--~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
+|. .++++++.|+ +.+.++ ..+...+.+.+.....+ ++-++.|+|+||+|++|-+.++++
T Consensus 248 dg~--~i~i~~erf~-~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~ 318 (394)
T 1k8k_B 248 DGR--IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLE 318 (394)
T ss_dssp TSC--EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHH
T ss_pred CCC--EEEECchhhc-ChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHH
Confidence 343 4667777773 333332 23567777778776432 233467999999999999999884
No 125
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=22.48 E-value=1.1e+02 Score=31.77 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=31.2
Q ss_pred eCHHHHHH-HhhHHHHHhHHHHHHHHHHCCCCCCCccceeeeccccchhhhhhhhc
Q psy4003 96 ITRARFEE-LCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150 (535)
Q Consensus 96 ltr~~fe~-l~~~~~~~~~~~i~~~l~~a~~~~~~~~~i~lvGGs~riP~vq~~~~ 150 (535)
.++.++-+ +++.+.-.+...++. +++.+.+ +..|.++||.+|.|+..|++.
T Consensus 356 ~~~~~~~rAvlEgia~~~~~~~~~-l~~~g~~---~~~i~~~GG~a~s~~~~Qi~A 407 (484)
T 2itm_A 356 HGPNELARAVLEGVGYALADGMDV-VHACGIK---PQSVTLIGGGARSEYWRQMLA 407 (484)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHTTTCC---CSCEEEESGGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC---cceEEEEeccccCHHHHHHHH
Confidence 35555433 233444444444433 3444544 458999999999999999774
No 126
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A*
Probab=21.75 E-value=1.4e+02 Score=30.28 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhhcccCCCCcceEEEecCc-cccHHHHHHHHHhhC
Q psy4003 166 ARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGS-IRIPKIQKMLQDFFN 221 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~V~LvGGs-sriP~v~~~l~~~f~ 221 (535)
++.+.+.+.-......-+++||.++|+.+.+||.|++.-.+ ..+|..-..|...+|
T Consensus 72 ~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~p~~a~~v~~~LG 128 (379)
T 3euo_A 72 ELHEVFMSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELG 128 (379)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCCCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCCCHHHHHHHHcC
Confidence 34444455555666777889999999999999998776543 246878888888884
No 127
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=21.68 E-value=1.2e+02 Score=29.70 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=29.0
Q ss_pred Ccce-EEEecCcccc--HH-----HHHHHHH--hh----CCCccCCCCCchhhHHhhHHHHHHH
Q psy4003 196 SIHD-VVLVGGSIRI--PK-----IQKMLQD--FF----NGKSLNLSINPDEAVAYGAAVQAAI 245 (535)
Q Consensus 196 ~i~~-V~LvGGssri--P~-----v~~~l~~--~f----~~~~~~~~~~~deaVa~GAa~~a~~ 245 (535)
+.+. |++.||-+.. ++ +++.+.+ .+ ...++.... .+.+..+|||.++..
T Consensus 264 ~P~~gvvigGGi~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~a~l~GAa~l~~~ 326 (332)
T 1sz2_A 264 GTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIV-HDNPGLLGSGAHLRQ 326 (332)
T ss_dssp TCTTEEEEECSSSGGGHHHHHHSSHHHHHHCCGGGHHHHTTCCEEEEC-CSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEChhhhhHHHHhccHHHHHHHHhcCchhhHHhCceEEEEE-CCchhHHHHHHHHHH
Confidence 6666 9999998753 33 4444442 12 111222232 678899999988753
No 128
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=21.33 E-value=99 Score=33.93 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=29.1
Q ss_pred hhcccCCCCcceEEEecCccccHHHHHHHH-HhhCCCccCCCCCchhhHHhhHHHH
Q psy4003 188 NDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ-DFFNGKSLNLSINPDEAVAYGAAVQ 242 (535)
Q Consensus 188 ~~~~~~~~~i~~V~LvGGssriP~v~~~l~-~~f~~~~~~~~~~~deaVa~GAa~~ 242 (535)
..+|+...||+.|+|.||+..---+...+. -+++.....+..-.-.++-.||.+.
T Consensus 526 ~~~gi~~~di~~v~lAGaFG~~l~~~~a~~iGllP~~~~~ki~~vGN~sl~GA~~~ 581 (631)
T 3zyy_X 526 AMVDLPLEAIDRVIIAGGFGKYLNIKDAITIGLLPDIDINKFSYVGNSSLKGARKA 581 (631)
T ss_dssp HHTTCCGGGCCEEEEESSSCSEEEHHHHHHHTSSCCSCGGGEEECSCHHHHHHHHH
T ss_pred HHcCCCHHHccEEEEeccccccCCHHHHhhcCCCCCccccCEEEECcHHHHHHHHH
Confidence 334444449999999998765444444443 4443322222222235566666654
No 129
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.61 E-value=3e+02 Score=21.29 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHhhHHHHHHHHHHHHHhcC
Q psy4003 453 RMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSG 493 (535)
Q Consensus 453 ~~~~~l~~l~~~D~~~~e~~~akN~LEs~Iy~~r~~Le~~~ 493 (535)
.++++.+++...|...++.+....+.++.|..+++.|+...
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566667777777777777777777777777776543
Done!