RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4003
(535 letters)
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 286 bits (735), Expect = 2e-92
Identities = 111/145 (76%), Positives = 126/145 (86%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I++G +F+VK+TAGDTHLGGEDFDNRLV F EFKRKHKKDI N RA+RRLRTA
Sbjct: 203 SLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTA 261
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
CERAKRTLSSST+AS+EID+L EGIDFY+ ITRARFEELC DLFR TL PVE+ L DAKL
Sbjct: 262 CERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKL 321
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
DK IHD+VLVGGS RIPK+QK+LQ
Sbjct: 322 DKSQIHDIVLVGGSTRIPKVQKLLQ 346
Score = 192 bits (489), Expect = 5e-56
Identities = 74/90 (82%), Positives = 79/90 (87%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
DFY+ ITRARFEELC DLFR TL PVE+ L DAKLDK IHD+VLVGGS RIPK+QK+LQ
Sbjct: 287 DFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQ 346
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILS 247
DFFNGK LN SINPDEAVAYGAAVQAAILS
Sbjct: 347 DFFNGKELNKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 258 bits (662), Expect = 1e-78
Identities = 114/181 (62%), Positives = 139/181 (76%), Gaps = 3/181 (1%)
Query: 357 IPLFQPKSFS-HSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFD 415
IP + + F+ ++ Q V IQVFEGERAMTKDNNLLG F+L GIPPAPRGVP+IEVTFD
Sbjct: 422 IPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481
Query: 416 LDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAK 475
+DANGILNVSA+D STGK+ +ITI NDKGRLSK DIDRM+ EAEKYKAED+ RERV AK
Sbjct: 482 IDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAK 541
Query: 476 NKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTL 533
N LE+Y +++K +D KLSD+DK ++ +A L WLE N LAEKEEFE + K +
Sbjct: 542 NGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEV 601
Query: 534 Q 534
+
Sbjct: 602 E 602
Score = 243 bits (623), Expect = 7e-73
Identities = 94/138 (68%), Positives = 114/138 (82%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D+ I+RARFEELC D FR TL PVE+ L DA +DK S+H+VVLVGGS RIPK+Q +++
Sbjct: 294 DYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIK 353
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMT 277
DFFNGK SINPDEAVAYGAAVQAAIL+G+ SS +QD+LL+DV PLSLG+ETAGGVMT
Sbjct: 354 DFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMT 413
Query: 278 KIVERNSRIPCKQQQTFT 295
K++ERN+ IP K+ Q FT
Sbjct: 414 KLIERNTTIPTKKSQIFT 431
Score = 243 bits (622), Expect = 1e-72
Identities = 96/146 (65%), Positives = 122/146 (83%), Gaps = 2/146 (1%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK-KDILANTRAVRRLRT 64
S+L I++G +F+VK+TAGDTHLGGEDFDNRLV F +FKRK++ KD+ +N RA+RRLRT
Sbjct: 209 SLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRT 267
Query: 65 ACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAK 124
CERAKRTLSSST+A++EID+L EGID+ I+RARFEELC D FR TL PVE+ L DA
Sbjct: 268 QCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAG 327
Query: 125 LDKGSIHDVVLVGGSIRIPKIQKMLQ 150
+DK S+H+VVLVGGS RIPK+Q +++
Sbjct: 328 MDKRSVHEVVLVGGSTRIPKVQSLIK 353
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 214 bits (547), Expect = 1e-64
Identities = 78/145 (53%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L ID G +F+V +T GDTHLGGEDFD R++ F FK+KH KDI + RA+++LR
Sbjct: 204 SLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRRE 262
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
E+AKR LSS + +EI++L +G DF +TRA+FEEL MDLF++TL PV++ L DA L
Sbjct: 263 VEKAKRALSSQHQTRIEIESLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADL 322
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
K I ++VLVGGS RIPK+Q++L+
Sbjct: 323 KKSDIDEIVLVGGSTRIPKVQQLLK 347
Score = 153 bits (389), Expect = 9e-42
Identities = 55/87 (63%), Positives = 69/87 (79%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
DF +TRA+FEEL MDLF++TL PV++ L DA L K I ++VLVGGS RIPK+Q++L+
Sbjct: 288 DFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLK 347
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAA 244
+FFNGK + INPDEAVAYGAAVQA
Sbjct: 348 EFFNGKEPSRGINPDEAVAYGAAVQAG 374
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 219 bits (561), Expect = 2e-64
Identities = 95/201 (47%), Positives = 131/201 (65%), Gaps = 8/201 (3%)
Query: 337 LSIMYVGNITTWRTNSHFNPIPLFQPKSFS-HSRYQNAVTIQVFEGERAMTKDNNLLGTF 395
L I +G + T + IP + + FS + Q AV IQV++GER M DN LLG+F
Sbjct: 393 LGIETLGGVMT-KLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSF 451
Query: 396 NLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRML 455
L GIPPAPRGVP+IEVTFD+DANGIL VSAKD TGK ++ITI G LS D+I+RM+
Sbjct: 452 ELDGIPPAPRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMV 510
Query: 456 AEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATLTWL 515
+AE+Y AED K++ER+ AKN+ E Y ++++++ ++ G KL +ADK V + WL
Sbjct: 511 KDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKV----EEAIEWL 566
Query: 516 EGNSLAE-KEEFEDRLKTLQQ 535
+ E KEE E + + LQ+
Sbjct: 567 KEELEGEDKEEIEAKTEELQK 587
Score = 217 bits (555), Expect = 2e-63
Identities = 80/147 (54%), Positives = 104/147 (70%), Gaps = 3/147 (2%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I +G +F+V +T GDTHLGGEDFDNRLV F +EFK+K+ D+ + RA++RLR A
Sbjct: 201 SILEIGDG-VFEVLATNGDTHLGGEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREA 259
Query: 66 CERAKRTLSS-STEASLEIDALHE-GIDFYSKITRARFEELCMDLFRQTLAPVERALNDA 123
E+AK LSS TE +L G D +TRA+FEELC DLF +TL PVE+AL DA
Sbjct: 260 AEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDA 319
Query: 124 KLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
KL K I +VVLVGGS RIP +Q++++
Sbjct: 320 KLSKSEIDEVVLVGGSTRIPAVQELVK 346
Score = 213 bits (544), Expect = 6e-62
Identities = 83/138 (60%), Positives = 105/138 (76%), Gaps = 3/138 (2%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D +TRA+FEELC DLF +TL PVE+AL DAKL K I +VVLVGGS RIP +Q++++
Sbjct: 287 DVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVK 346
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMT 277
+FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DV PLSLGIET GGVMT
Sbjct: 347 EFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMT 403
Query: 278 KIVERNSRIPCKQQQTFT 295
K++ RN+ IP K+ Q F+
Sbjct: 404 KLIPRNTTIPTKKSQIFS 421
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 216 bits (553), Expect = 6e-63
Identities = 76/165 (46%), Positives = 105/165 (63%), Gaps = 4/165 (2%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q AVTI V +GER M DN LG FNLTGIPPAPRGVP+IEVTFD+DANGI++VSAKD
Sbjct: 426 QPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKG 485
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TGK + ITI G LS ++I+RM+ +AE ED K++E V A+N+ +S + ++ +
Sbjct: 486 TGKEQSITITASSG-LSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK 544
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
+ G K+ +K + A L+G +KE + + + L Q
Sbjct: 545 ELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQ 586
Score = 211 bits (539), Expect = 8e-61
Identities = 73/134 (54%), Positives = 100/134 (74%), Gaps = 5/134 (3%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
K+TRA+FEEL DL +T+ P ++AL DA L I +V+LVGGS R+P +Q+++++FF
Sbjct: 292 KLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF- 350
Query: 222 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVE 281
GK N +NPDE VA GAA+Q +L+GD ++DVLL+DV PLSLGIET GGVMTK++E
Sbjct: 351 GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIE 406
Query: 282 RNSRIPCKQQQTFT 295
RN+ IP K+ Q F+
Sbjct: 407 RNTTIPTKKSQVFS 420
Score = 168 bits (428), Expect = 2e-45
Identities = 68/153 (44%), Positives = 99/153 (64%), Gaps = 17/153 (11%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I +G +F+V ST GDTHLGG+DFD R++ + ADEFK+++ D+ + A++RL+ A
Sbjct: 200 SILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEA 258
Query: 66 CERAKRTLSSSTEASLEI-------DA---LHEGIDFYSKITRARFEELCMDLFRQTLAP 115
E+AK LSS+ + EI DA H I K+TRA+FEEL DL +T+ P
Sbjct: 259 AEKAKIELSSAQQT--EINLPFITADASGPKHLEI----KLTRAKFEELTEDLVERTIEP 312
Query: 116 VERALNDAKLDKGSIHDVVLVGGSIRIPKIQKM 148
++AL DA L I +V+LVGGS R+P +Q++
Sbjct: 313 CKQALKDAGLSVSDIDEVILVGGSTRMPAVQEL 345
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 193 bits (493), Expect = 1e-54
Identities = 78/166 (46%), Positives = 109/166 (65%), Gaps = 2/166 (1%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q AV I V +GER M DN LG F LTGIPPAPRGVP+IEVTFD+DANGIL+VSAKD
Sbjct: 424 QPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKG 483
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TGK + ITI G LS+++I+RM+ EAE ED K++E + A+N +S A+ ++ +
Sbjct: 484 TGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK 542
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAE-KEEFEDRLKTLQQ 535
++G KL +K + +A + L+G + E K + E+ + LQ+
Sbjct: 543 EAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQK 588
Score = 192 bits (489), Expect = 4e-54
Identities = 78/142 (54%), Positives = 101/142 (71%), Gaps = 9/142 (6%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
+TRA+FEEL DL +T PV +AL DA L I +V+LVGGS RIP +Q++++DFF
Sbjct: 290 TLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF- 348
Query: 222 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVE 281
GK N S+NPDE VA GAA+Q +L GD ++DVLL+DV PLSLGIET GGVMTK++E
Sbjct: 349 GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIE 404
Query: 282 RNSRIPCKQQQTFT----EQPS 299
RN+ IP K+ Q F+ QP+
Sbjct: 405 RNTTIPTKKSQVFSTAADNQPA 426
Score = 153 bits (388), Expect = 3e-40
Identities = 67/149 (44%), Positives = 94/149 (63%), Gaps = 5/149 (3%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I +G F+V STAGDTHLGG+DFD R++ + ADEFK++ D+ + A++RL+ A
Sbjct: 198 SILEIGDGV-FEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEA 256
Query: 66 CERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRARFEELCMDLFRQTLAPVERALN 121
E+AK LSS + I A G +TRA+FEEL DL +T PV +AL
Sbjct: 257 AEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALK 316
Query: 122 DAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
DA L I +V+LVGGS RIP +Q++++
Sbjct: 317 DAGLSASDIDEVILVGGSTRIPAVQELVK 345
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 186 bits (474), Expect = 6e-54
Identities = 65/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S++ ++ G F+V +T GD HLGG+DFDN L + A++FK K D+ + RA+RRL+ A
Sbjct: 200 SLVEVEGGV-FEVLATGGDNHLGGDDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEA 258
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
E+AK LSSS EA++ + L G D ++TR FEEL L +T+ VER L DA L
Sbjct: 259 AEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRPLLERTIDLVERVLADAGL 318
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
I V+LVGGS RIP ++++L+
Sbjct: 319 KPEDIDAVLLVGGSSRIPLVRELLE 343
Score = 119 bits (301), Expect = 1e-29
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D ++TR FEEL L +T+ VER L DA L I V+LVGGS RIP ++++L+
Sbjct: 284 DLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLE 343
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAA 244
+ F K SI+PDEAVA GAA+ AA
Sbjct: 344 ELFGKK-PLRSIDPDEAVALGAAIYAA 369
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 185 bits (470), Expect = 5e-51
Identities = 115/305 (37%), Positives = 157/305 (51%), Gaps = 70/305 (22%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
SVL + +G +F+V ST+GDTHLGG+DFD R+V + A FK+
Sbjct: 239 SVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKD------------------ 279
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
EGID +Q L + A AK+
Sbjct: 280 ----------------------EGIDLLKD--------------KQALQRLTEAAEKAKI 303
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELCMDLFRQTLAPVER 185
+ S L SI +P I P I + +TRA+FEELC DL + PVE
Sbjct: 304 ELSS-----LTQTSISLPFITATADGPKHI----DTTLTRAKFEELCSDLLDRCKTPVEN 354
Query: 186 ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245
AL DAKL I +V+LVGGS RIP +Q++++ GK N+++NPDE VA GAAVQA +
Sbjct: 355 ALRDAKLSFKDIDEVILVGGSTRIPAVQELVKK-LTGKDPNVTVNPDEVVALGAAVQAGV 413
Query: 246 LSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSKLPSSV 305
L+G+ S D++L+DV PLSLG+ET GGVMTKI+ RN+ +P + + F+ +SV
Sbjct: 414 LAGEVS----DIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADG-QTSV 468
Query: 306 ETPVL 310
E VL
Sbjct: 469 EINVL 473
Score = 142 bits (360), Expect = 3e-36
Identities = 68/165 (41%), Positives = 97/165 (58%), Gaps = 4/165 (2%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q +V I V +GER +DN LG+F L GIPPAPRGVP+IEV FD+DANGIL+VSA D
Sbjct: 465 QTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKG 524
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TGK + ITI L KD+++RM+ EAEK+ ED ++R+ V KN+ +S + ++ +
Sbjct: 525 TGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK 583
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
+ G K+ K V + S ++ +D + L Q
Sbjct: 584 ELGDKVPADVKEKVEAKLKELKDAIASGST---QKMKDAMAALNQ 625
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 172 bits (439), Expect = 5e-47
Identities = 81/148 (54%), Positives = 104/148 (70%), Gaps = 6/148 (4%)
Query: 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 222
+TRA+FEELC DL + PVE AL DAKLDK I +VVLVGGS RIP IQ++++ G
Sbjct: 295 LTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-G 353
Query: 223 KSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVER 282
K N S+NPDE VA GAAVQA +L+G+ ++D+LL+DV PLSLG+ET GGVMTKI+ R
Sbjct: 354 KKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGVMTKIIPR 409
Query: 283 NSRIPCKQQQTFTEQPSKLPSSVETPVL 310
N+ IP K+ + F+ +VE VL
Sbjct: 410 NTTIPTKKSEVFSTAVDNQT-NVEIHVL 436
Score = 162 bits (413), Expect = 2e-43
Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q V I V +GER + KDN LGTF L GIPPAPRGVP+IEVTFD+DANGIL+V+AKD
Sbjct: 428 QTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKG 487
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TGK + ITIQ L KD+++RM+ EAEK AED ++RE++ KN+ ES + ++ +
Sbjct: 488 TGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK 546
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTL 533
+ K+S+ K + L+ ++ + + L+
Sbjct: 547 ELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKA 589
Score = 145 bits (367), Expect = 3e-37
Identities = 70/149 (46%), Positives = 98/149 (65%), Gaps = 5/149 (3%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L + +G +F+V ST+GDTHLGG+DFD ++V + EFK+K D+ + +A++RL A
Sbjct: 202 SILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEA 260
Query: 66 CERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRARFEELCMDLFRQTLAPVERALN 121
E+AK LS+ T+ + I A G +TRA+FEELC DL + PVE AL
Sbjct: 261 AEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALK 320
Query: 122 DAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
DAKLDK I +VVLVGGS RIP IQ++++
Sbjct: 321 DAKLDKSDIDEVVLVGGSTRIPAIQELVK 349
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 172 bits (437), Expect = 5e-47
Identities = 68/145 (46%), Positives = 102/145 (70%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I +G +F+V +T GD HLGG+DFDN L+ + EFK K D+ ++ A++RLR A
Sbjct: 187 SLLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREA 245
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
E+AK LSS+T+ S+ + ++ ID ++TRA+FEEL +DL +T+ PVE+AL DA L
Sbjct: 246 AEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGL 305
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
+K I V+LVGGS RIP +Q++++
Sbjct: 306 EKSDIDLVILVGGSTRIPAVQELVK 330
Score = 167 bits (426), Expect = 2e-45
Identities = 80/138 (57%), Positives = 103/138 (74%), Gaps = 5/138 (3%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D ++TRA+FEEL +DL +T+ PVE+AL DA L+K I V+LVGGS RIP +Q++++
Sbjct: 271 DLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVK 330
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMT 277
+FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV T
Sbjct: 331 EFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRT 385
Query: 278 KIVERNSRIPCKQQQTFT 295
I+ERN+ IP K+ Q F+
Sbjct: 386 PIIERNTTIPVKKSQEFS 403
Score = 163 bits (415), Expect = 7e-44
Identities = 81/165 (49%), Positives = 112/165 (67%), Gaps = 6/165 (3%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q AV I VF+GER M DN LG F L GIPPAPRGVP+IEVTFD+DANGILNV+AKD
Sbjct: 409 QTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLG 468
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TGK + ITI+ G LS ++I+RM+ +AE A D K RE V A+N+ ES +++++A +
Sbjct: 469 TGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALK 527
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
+ K+S+ +K + +A + LEG EKEE + +++ LQ+
Sbjct: 528 EIV-KVSEEEKEKIEEAITDLEEALEG----EKEEIKAKIEELQE 567
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 171 bits (436), Expect = 2e-46
Identities = 72/133 (54%), Positives = 95/133 (71%), Gaps = 4/133 (3%)
Query: 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 222
+TRA+FEEL DL T+ P+++AL DA L I V+LVGGS RIP +Q+ +Q FF G
Sbjct: 294 LTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG 353
Query: 223 KSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVER 282
K + S+NPDEAVA GAA+QA +L G+ ++D+LL+DV PLSLGIET G V TKI+ER
Sbjct: 354 KQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIER 409
Query: 283 NSRIPCKQQQTFT 295
N+ IP + Q F+
Sbjct: 410 NTTIPTSKSQVFS 422
Score = 162 bits (411), Expect = 4e-43
Identities = 71/165 (43%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q +V I V +GERAM KDN LG F LTGIPPAPRGVP+IEV+F++D NGIL VSA+D
Sbjct: 428 QTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQG 487
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TG+ + I I N G LS ++I+RM EAEKY ED ++++ + KN+ +S ++ + +
Sbjct: 488 TGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK 546
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
++G +S+ K Q L ++ EE + +L+ QQ
Sbjct: 547 ENGELISEELKQRAEQKVEQLEAALTDPNI-SLEELKQQLEEFQQ 590
Score = 126 bits (317), Expect = 1e-30
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 13/153 (8%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L + +G +F+VK+TAG+ HLGG+DFDN +V + + F+++ D+ + A++RLR A
Sbjct: 201 SILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREA 259
Query: 66 CERAKRTLSSSTEASL--------EIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVE 117
E+AK LSS S+ E H ++ TRA+FEEL DL T+ P++
Sbjct: 260 AEKAKIELSSMLTTSINLPFITADETGPKHLEMEL----TRAKFEELTKDLVEATIEPMQ 315
Query: 118 RALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
+AL DA L I V+LVGGS RIP +Q+ +Q
Sbjct: 316 QALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQ 348
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 170 bits (431), Expect = 1e-45
Identities = 81/165 (49%), Positives = 115/165 (69%), Gaps = 4/165 (2%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q V I+VF+GER M DN LLG F+L GIPPAPRGVP+IEVTFD+DANGI+N+SA D S
Sbjct: 467 QTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKS 526
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TGK + ITIQ+ G LS ++I++M+ EAE+YK +D+K++E V AKN+ E+ ++V++
Sbjct: 527 TGKKQEITIQSSGG-LSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS 585
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
D K+SDADK + Q + + L + + +D+ K LQ+
Sbjct: 586 DLKDKISDADKDELKQKITKLRSTLSSEDV---DSIKDKTKQLQE 627
Score = 149 bits (377), Expect = 2e-38
Identities = 65/134 (48%), Positives = 96/134 (71%), Gaps = 5/134 (3%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
K++RA+ EEL DL ++T+ P E+ + DA + K ++DV+LVGG R+PK+ + ++ F
Sbjct: 333 KLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF- 391
Query: 222 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVE 281
GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DV PLSLGIET GGV T+++
Sbjct: 392 GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLIN 447
Query: 282 RNSRIPCKQQQTFT 295
RN+ IP K+ Q F+
Sbjct: 448 RNTTIPTKKSQVFS 461
Score = 119 bits (301), Expect = 1e-28
Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 5/149 (3%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I G +F+VK+T G+T LGGEDFD R++ + EFK++ D+ + A++RLR A
Sbjct: 241 SILEI-LGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREA 299
Query: 66 CERAKRTLSSSTEASLE---IDALHEGID-FYSKITRARFEELCMDLFRQTLAPVERALN 121
E AK LSS T+ + I A G K++RA+ EEL DL ++T+ P E+ +
Sbjct: 300 AETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIK 359
Query: 122 DAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
DA + K ++DV+LVGG R+PK+ + ++
Sbjct: 360 DAGVKKDELNDVILVGGMTRMPKVSETVK 388
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 170 bits (432), Expect = 1e-45
Identities = 109/312 (34%), Positives = 158/312 (50%), Gaps = 84/312 (26%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L + G +F+VK+T+GDT LGG DFD R+V + A++F K D+ + +A++RL A
Sbjct: 202 SLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEA 260
Query: 66 CERAKRTLS--SSTEASLE-IDALHEG---IDFYSKITRARFEELCMDLFRQTLAPVERA 119
E+AK LS S T+ SL I A +G I+ +++ R +FE LC DL + L PV+RA
Sbjct: 261 AEKAKIELSGVSVTDISLPFITATEDGPKHIE--TRLDRKQFESLCGDLLDRLLRPVKRA 318
Query: 120 LNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELCMDLFRQT 179
L DA L I +VVLVGGS R+P +Q+++ R + E Q
Sbjct: 319 LKDAGLSPEDIDEVVLVGGSTRMPMVQQLV-------RTLIPR-------EPN-----QN 359
Query: 180 LAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGA 239
+ P E VV VG +I
Sbjct: 360 VNPDE---------------VVAVGAAI-------------------------------- 372
Query: 240 AVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTF-TEQP 298
QA IL+G+ ++D+LL+DV PLSLG+ET GGVM K++ RN+ IP ++ F T +
Sbjct: 373 --QAGILAGE----LKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSEN 426
Query: 299 SKLPSSVETPVL 310
++ SSVE V
Sbjct: 427 NQ--SSVEIHVW 436
Score = 145 bits (367), Expect = 5e-37
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 6/172 (3%)
Query: 356 PIPLFQPKSFSHSRY-QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTF 414
IP+ + FS S Q++V I V++GER M DN LG F L+GIPPAPRGVP+++V F
Sbjct: 412 TIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAF 471
Query: 415 DLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAA 474
D+DANGIL VSA D +TG+ + +TIQ LS+ +++RM+ EAE ED ++RER+
Sbjct: 472 DIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKADEDRRRRERIEK 530
Query: 475 KNKLESYAFA----VKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAE 522
+N+ + ++ AA + G ++ + +V A LE + E
Sbjct: 531 RNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRE 582
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 162 bits (411), Expect = 6e-45
Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 9/151 (5%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I +G +F+V +T GDTHLGG+DFD R++ + +EFK++ D+ + A++RL+ A
Sbjct: 201 SILEIGDG-VFEVLATNGDTHLGGDDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEA 259
Query: 66 CERAKRTLSSSTEASLE---IDALHEG---IDFYSKITRARFEELCMDLFRQTLAPVERA 119
E+AK LSS TE + I A G ++ +TRA+FEEL DL +T+ PV++A
Sbjct: 260 AEKAKIELSSVTETEINLPFITADATGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQA 317
Query: 120 LNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
L DAKL I +V+LVGGS RIP +Q++++
Sbjct: 318 LKDAKLSPSDIDEVILVGGSTRIPAVQELVK 348
Score = 127 bits (321), Expect = 2e-32
Identities = 44/85 (51%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
+TRA+FEEL DL +T+ PV++AL DAKL I +V+LVGGS RIP +Q+++++ F
Sbjct: 293 TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF- 351
Query: 222 GKSLNLSINPDEAVAYGAAVQAAIL 246
GK N +NPDE VA GAA+Q +L
Sbjct: 352 GKEPNKGVNPDEVVAIGAAIQGGVL 376
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 155 bits (395), Expect = 1e-42
Identities = 69/145 (47%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S++A ++G L +V STA D +LGG DFD L FA EFK K+K D+L+N +A RL A
Sbjct: 209 SIVAFNKGKL-KVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAA 267
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
CE+ K+ LS++TEA L I+ L E D KI R FEELC L + P+E+AL +A L
Sbjct: 268 CEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGL 327
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
K IH V +VGGS RIP +++++
Sbjct: 328 TKEDIHSVEIVGGSTRIPAVKELIA 352
Score = 106 bits (268), Expect = 4e-25
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 216
+D KI R FEELC L + P+E+AL +A L K IH V +VGGS RIP +++++
Sbjct: 292 KDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELI 351
Query: 217 QDFFNGKSLNLSINPDEAVAYGAAVQAAILS 247
F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 352 AKVF-GKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 159 bits (404), Expect = 3e-42
Identities = 61/133 (45%), Positives = 89/133 (66%), Gaps = 3/133 (2%)
Query: 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 222
ITR +F L L ++TL RAL DA ++ + +VV+VGGS R+P +++ + +FF
Sbjct: 295 ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGR 354
Query: 223 KSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVER 282
L SI+PD+ VA GAA+QA IL+G+ + D+LL+DV PLSLG+ET GG++ KI+ R
Sbjct: 355 TPLT-SIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKIIPR 411
Query: 283 NSRIPCKQQQTFT 295
N+ IP + Q FT
Sbjct: 412 NTTIPVARAQEFT 424
Score = 97.9 bits (245), Expect = 1e-21
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q A+ I V +GER + D L F L GIPP G +I VTF +DA+G+L+V+A + S
Sbjct: 430 QTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKS 489
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQR-----ERVAAKNKLESYAFAV 485
TG I ++ G L+ D+I RML ++ + AE+D Q ++V A+ LE A+
Sbjct: 490 TGVEASIQVKPSYG-LTDDEIARMLKDSMSH-AEEDMQARALAEQKVEAERVLE----AL 543
Query: 486 KQAAEDSGSKLSDADKTSVSQA 507
+ A G LS A++ ++ A
Sbjct: 544 QAALAADGDLLSAAERAAIDAA 565
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 150 bits (380), Expect = 1e-40
Identities = 65/148 (43%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 3 TNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRL 62
T+ ++L ++ G +++V +T+ D +LGGE F L + A+EFKRK K+D+ N RA+ +L
Sbjct: 202 TDVTILRVNSG-MYRVLATSTDDNLGGESFTETLSQYLANEFKRKWKQDVRGNARAMMKL 260
Query: 63 RTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALND 122
A E AK+ LS+ A+ +++L+EGIDF ++RARFE LC LF + L P+E+ L
Sbjct: 261 NNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQ 320
Query: 123 AKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
A L K I+ VVL GGS RIPK+Q++++
Sbjct: 321 ANLTKTDINKVVLCGGSSRIPKLQQLIK 348
Score = 106 bits (266), Expect = 6e-25
Identities = 43/87 (49%), Positives = 57/87 (65%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
DF ++RARFE LC LF + L P+E+ L A L K I+ VVL GGS RIPK+Q++++
Sbjct: 289 DFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIK 348
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAA 244
D F + SI+PDE +A GAA QA
Sbjct: 349 DLFPSVEVLNSISPDEVIAIGAAKQAG 375
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 153 bits (390), Expect = 2e-40
Identities = 65/139 (46%), Positives = 90/139 (64%), Gaps = 3/139 (2%)
Query: 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 216
+DF K+TR FE L L ++TL+ RAL DA L I VVLVGGS R+P +++ +
Sbjct: 273 KDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAV 332
Query: 217 QDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVM 276
+ F + L I+PD+ VA GAA+QA +L+G+ D+LL+DV PLSLGIET GG++
Sbjct: 333 AELFGQEPLT-DIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMGGLV 389
Query: 277 TKIVERNSRIPCKQQQTFT 295
KI+ RN+ IP + Q FT
Sbjct: 390 EKIIPRNTPIPVARAQEFT 408
Score = 106 bits (268), Expect = 2e-24
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 6/155 (3%)
Query: 356 PIPLFQPKSFSHSRY---QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEV 412
PIP+ + + F+ Y Q A+ I V +GER + +D L F L GIPP G +I V
Sbjct: 398 PIPVARAQEFT--TYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRV 455
Query: 413 TFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERV 472
TF +DA+G+L VSA++ STG + I ++ G LS ++I+RML ++ K+ ED R
Sbjct: 456 TFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMYARALA 514
Query: 473 AAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQA 507
K + E A++ A G LS+ ++ ++ A
Sbjct: 515 EQKVEAERILEALQAALAADGDLLSEDERAAIDAA 549
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 147 bits (372), Expect = 2e-39
Identities = 68/149 (45%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I +G +F+VKST GDT LGGEDFDN L+ EFK++ D+ + A++RLR A
Sbjct: 202 SILEIQKG-VFEVKSTNGDTFLGGEDFDNALLRHLVKEFKKEQGIDLTKDNMALQRLREA 260
Query: 66 CERAKRTLSSS--TEASLE-IDALHEG-IDFYSKITRARFEELCMDLFRQTLAPVERALN 121
E+AK LSSS T+ +L I A G K+TRA+FE L DL ++T+ P ++AL
Sbjct: 261 AEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALK 320
Query: 122 DAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
DA + K I +V+LVGG R+PK+Q+ ++
Sbjct: 321 DAGVSKSDIGEVILVGGMTRMPKVQETVK 349
Score = 106 bits (267), Expect = 4e-25
Identities = 41/85 (48%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
K+TRA+FE L DL ++T+ P ++AL DA + K I +V+LVGG R+PK+Q+ +++ F
Sbjct: 294 KLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF- 352
Query: 222 GKSLNLSINPDEAVAYGAAVQAAIL 246
GK + +NPDEAVA GAA+Q +L
Sbjct: 353 GKEPSKGVNPDEAVAIGAAIQGGVL 377
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 144 bits (366), Expect = 2e-38
Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
Query: 16 FQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK--KDILANTRAVRRLRTACERAKRTL 73
+V D LGG +FD RL A EF+ KHK D+ N RA+ +L RAK L
Sbjct: 225 IEVLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVL 284
Query: 74 SSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDV 133
S+++EA + I++L++ IDF +KITRA FEELC DLF + +AP+++AL A L I V
Sbjct: 285 SANSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSV 344
Query: 134 VLVGGSIRIPKIQKMLQ 150
L+GG+ R+PK+Q+ L
Sbjct: 345 ELIGGATRVPKVQEELS 361
Score = 103 bits (259), Expect = 6e-24
Identities = 43/88 (48%), Positives = 56/88 (63%)
Query: 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 216
DF +KITRA FEELC DLF + +AP+++AL A L I V L+GG+ R+PK+Q+ L
Sbjct: 301 IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEEL 360
Query: 217 QDFFNGKSLNLSINPDEAVAYGAAVQAA 244
+ K L +N DEA A GAA AA
Sbjct: 361 SEAVGKKKLGKHLNADEAAAMGAAYYAA 388
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 139 bits (353), Expect = 8e-37
Identities = 65/145 (44%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I++G +F+VK+T GDT LGGEDFDN +V + EFKRK+K D+ N +A++R++ A
Sbjct: 202 SILNIEDG-VFEVKATNGDTMLGGEDFDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEA 260
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
E+AK LSSS E+ +E+ L ITR FE+L + ++T+ P ++ L DA L
Sbjct: 261 AEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGL 320
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
K I +V+LVGG R+P IQ ++Q
Sbjct: 321 RKKDIDEVILVGGMTRMPYIQNVVQ 345
Score = 101 bits (253), Expect = 2e-23
Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 222
ITR FE+L + ++T+ P ++ L DA L K I +V+LVGG R+P IQ ++Q+ F G
Sbjct: 291 ITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIF-G 349
Query: 223 KSLNLSINPDEAVAYGAAVQAAIL 246
K + S+NPDEAVA GAA+Q +IL
Sbjct: 350 KKPSKSVNPDEAVALGAAIQGSIL 373
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 139 bits (351), Expect = 2e-36
Identities = 67/148 (45%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 2 RTNGSVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRR 61
RT+ SV+A+ G L+ + +TA D LGG+ D+ LV FA EF +K K D N RA+ +
Sbjct: 205 RTDVSVIAVRGG-LYTILATAHDPGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAK 263
Query: 62 LRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALN 121
LR E K+TLS+ST A+ +++L EGIDF+S I R RFE L +FRQ A V A+
Sbjct: 264 LRAESEITKKTLSASTSATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVA 323
Query: 122 DAKLDKGSIHDVVLVGGSIRIPKIQKML 149
A LD I +V+LVGG+ PK+ L
Sbjct: 324 KAGLDALDIDEVLLVGGTAFTPKLASNL 351
Score = 74.7 bits (184), Expect = 2e-14
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
DF+S I R RFE L +FRQ A V A+ A LD I +V+LVGG+ PK+ L
Sbjct: 293 DFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLS 352
Query: 218 DFFNGK-------SLNLSINPDEAVAYGAAVQAA 244
F +++ +++P E VA G A+QA+
Sbjct: 353 YLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 125 bits (317), Expect = 4e-32
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 10/146 (6%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHK--KDILANTRAVRRLR 63
SVL + +G + +V+++AGD +LGGEDF L + F +KH + L + + RL
Sbjct: 175 SVLELFDG-VMEVRASAGDNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSE-LARLL 228
Query: 64 TACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDA 123
A ERAKR LS EA + + EG + +TR FEE+C L + P+ERAL DA
Sbjct: 229 RAAERAKRALSDQEEAEMSVR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDA 286
Query: 124 KLDKGSIHDVVLVGGSIRIPKIQKML 149
+L I +++LVGG+ R+P ++K++
Sbjct: 287 RLKPSDIDEIILVGGATRMPVVRKLV 312
Score = 99.9 bits (250), Expect = 5e-23
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
+TR FEE+C L + P+ERAL DA+L I +++LVGG+ R+P ++K++ F
Sbjct: 258 TLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLF- 316
Query: 222 GKSLNLSINPDEAVAYGAAVQAA 244
G+ + +NPDE VA GAA+QA
Sbjct: 317 GRFPLVHLNPDEVVALGAAIQAG 339
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 129 bits (324), Expect = 1e-31
Identities = 72/170 (42%), Positives = 109/170 (64%), Gaps = 5/170 (2%)
Query: 357 IPLFQPKSFSH-SRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFD 415
IP + ++FS + Q V I+VF+GER M DN ++G F+L GIPPAPRGVP+IEVTFD
Sbjct: 438 IPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFD 497
Query: 416 LDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAK 475
+DANGI +V+AKD +TGK + ITI + G LSK+ I++M+ ++E++ D +RE V +
Sbjct: 498 IDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHAEADRVKRELVEVR 556
Query: 476 NKLESYA-FAVKQAAEDSGSKLSDADKTSVSQACSATLTWLEGNSLAEKE 524
N E+ A +Q E +SDA+K +V + +E ++A+ +
Sbjct: 557 NNAETQLTTAERQLGE--WKYVSDAEKENVKTLVAELRKAMENPNVAKDD 604
Score = 119 bits (299), Expect = 2e-28
Identities = 58/134 (43%), Positives = 90/134 (67%), Gaps = 5/134 (3%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
I+R++FE + L +++AP ++ + DA ++ I+DVVLVGG R+PK+ + ++ FF
Sbjct: 319 HISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF- 377
Query: 222 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVE 281
K +NPDEAVA GAA +L GD ++ ++L+DV PLSLGIET GGV T+++
Sbjct: 378 QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIP 433
Query: 282 RNSRIPCKQQQTFT 295
+N+ IP K+ QTF+
Sbjct: 434 KNTTIPTKKSQTFS 447
Score = 100 bits (250), Expect = 3e-22
Identities = 56/144 (38%), Positives = 87/144 (60%), Gaps = 5/144 (3%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
SVL I G +F+VK+T GDTHLGGEDFD L + +EF++ D+ A++R+R A
Sbjct: 227 SVLEI-AGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREA 285
Query: 66 CERAKRTLSSSTEASLEIDALHEGID----FYSKITRARFEELCMDLFRQTLAPVERALN 121
E+AK LSS+ E + + + D I+R++FE + L +++AP ++ +
Sbjct: 286 AEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMK 345
Query: 122 DAKLDKGSIHDVVLVGGSIRIPKI 145
DA ++ I+DVVLVGG R+PK+
Sbjct: 346 DAGVELKEINDVVLVGGMTRMPKV 369
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 120 bits (303), Expect = 5e-30
Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S++A +G L +V TA D H GG DFD + FADEFK K+K DI N +A R+ TA
Sbjct: 208 SIVAFKKGQL-KVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTA 266
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
E+ K+ LS++T A ++++ +D S+++R EEL L + PV +AL AKL
Sbjct: 267 AEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKL 326
Query: 126 DKGSIHDVVLVGGSIRIPKIQKML 149
+ V ++GG+ RIP +++ +
Sbjct: 327 SAEEVDFVEIIGGTTRIPTLKQSI 350
Score = 82.8 bits (204), Expect = 4e-17
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D S+++R EEL L + PV +AL AKL + V ++GG+ RIP +++ +
Sbjct: 292 DVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSIS 351
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAA 244
+ F GK L+ ++N DEA+A GAA A
Sbjct: 352 EAF-GKPLSTTLNQDEAIAKGAAFICA 377
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 114 bits (288), Expect = 5e-28
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L + +G +F+V +T GD+ LGG+DFD L +K+ L + L
Sbjct: 196 SILKLHKG-VFEVLATGGDSALGGDDFDQLLAELL----LKKYGLKSLISDEDQAELLLI 250
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
+AK LS + E +E+ G DF ITR FE+L L ++TL ++AL DA L
Sbjct: 251 ARKAKEALSGAEE--VEVR----GQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGL 304
Query: 126 DKGSIHDVVLVGGSIRIPKIQKML 149
I V+LVGGS RIP +Q+ +
Sbjct: 305 SVKDIKGVILVGGSTRIPLVQEAV 328
Score = 106 bits (268), Expect = 2e-25
Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 156 FRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKM 215
+DF ITR FE+L L ++TL ++AL DA L I V+LVGGS RIP +Q+
Sbjct: 268 GQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEA 327
Query: 216 LQDFFNGKSLNLSINPDEAVAYGAAVQA 243
+ FF K L INPDE VA GAA+QA
Sbjct: 328 VSKFFGQKPLC-DINPDEVVAIGAALQA 354
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 107 bits (269), Expect = 2e-25
Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
SV A ++G L +V +TA DT LGG FD LV +F +EF +K+K DI + RA+ RL
Sbjct: 210 SVCAFNKGKL-KVLATAFDTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQE 268
Query: 66 CERAKRTLSS-STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAK 124
CE+ K+ +S+ +++ L I+ ID + R +F E+C DL + P+ L AK
Sbjct: 269 CEKLKKLMSANASDLPLNIECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAK 328
Query: 125 LDKGSIHDVVLVGGSIRIPKIQK 147
L K I+ V +VGG+ RIP +++
Sbjct: 329 LKKEDIYAVEIVGGATRIPAVKE 351
Score = 80.4 bits (198), Expect = 2e-16
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D + R +F E+C DL + P+ L AKL K I+ V +VGG+ RIP +++ +
Sbjct: 295 DVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKIS 354
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILS 247
FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 355 KFF-GKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 106 bits (265), Expect = 6e-25
Identities = 55/143 (38%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S A ++G L +V TA D LGG++FD +LV F EFK K+K D + RA+ RL
Sbjct: 210 SACAFNKGKL-KVLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQE 268
Query: 66 CERAKRTLSS-STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAK 124
CE+ K+ +SS ST+ L I+ D K+ R++FEELC DL ++ P+ L
Sbjct: 269 CEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTH 328
Query: 125 LDKGSIHDVVLVGGSIRIPKIQK 147
L + V +VGG+ RIP +++
Sbjct: 329 LKVEDVSAVEIVGGATRIPAVKE 351
Score = 73.1 bits (179), Expect = 6e-14
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 216
+D K+ R++FEELC DL ++ P+ L L + V +VGG+ RIP +++ +
Sbjct: 294 KDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERI 353
Query: 217 QDFFNGKSLNLSINPDEAVAYGAAVQAAILS 247
FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 354 AKFF-GKDVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 106 bits (265), Expect = 1e-24
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 159 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQD 218
F ++TR FE L DLF++ L P+E L + LDK + ++VLVGGS RIP+I++++
Sbjct: 315 FEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGR 374
Query: 219 FFNGKSLNLSINPDEAVAYGAAVQAAILSG 248
FF GK N S++P+ AV G A+QA I+ G
Sbjct: 375 FF-GKDPNTSVDPELAVVTGVAIQAGIIGG 403
Score = 103 bits (259), Expect = 6e-24
Identities = 58/150 (38%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L +G +F ++ AG+ LGG+DF+ RL+ + + K+ K + N ++RLR A
Sbjct: 226 SLLNK-QGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGK-VPDNKEDIQRLRQA 283
Query: 66 CERAK--RTLSSSTEASLEIDALHEG---IDFYSKITRARFEELCMDLFRQTLAPVERAL 120
E AK TL ST SL + L EG + F ++TR FE L DLF++ L P+E L
Sbjct: 284 VEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVL 343
Query: 121 NDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
+ LDK + ++VLVGGS RIP+I++++
Sbjct: 344 AEGHLDKEEVDEIVLVGGSTRIPRIRQVIG 373
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 103 bits (259), Expect = 4e-24
Identities = 56/159 (35%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
SV A ++G L +V +T D +LGG +FD LV +F DEFK K+K ++ N+RA+ RL
Sbjct: 210 SVCAFNKGKL-KVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQE 268
Query: 66 CERAKRTLSS-STEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAK 124
CE+ K+ +S+ +++ L I+ +D SK+ RA+FE+LC L + P++ + A
Sbjct: 269 CEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQAN 328
Query: 125 LDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKI 163
L + I+ + +VGG+ RIP +++ QI +D + +
Sbjct: 329 LQREDIYSIEIVGGATRIPAVKE--QITSFFLKDISTTL 365
Score = 75.1 bits (184), Expect = 1e-14
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D SK+ RA+FE+LC L + P++ + A L + I+ + +VGG+ RIP +++ +
Sbjct: 295 DVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQIT 354
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILS 247
FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 355 SFFL-KDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 93.4 bits (232), Expect = 5e-20
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 154 LIFRDFYSK----ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRI 209
L ++D ++ I + E+L + L +T+ + L A I V+LVGG+ RI
Sbjct: 264 LTYKDSFNNDNISINKQTLEQLILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRI 321
Query: 210 PKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGI 269
P I+ L F L+ I+PD+AV +GAA+QA L + + LL+DV PLSLG+
Sbjct: 322 PLIKDELYKAFKVDILS-DIDPDKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGM 376
Query: 270 ETAGGVMTKIVERNSRIPCKQQQTFT 295
E GG++ KI+ RN+ IP + FT
Sbjct: 377 ELYGGIVEKIIMRNTPIPISVVKEFT 402
Score = 81.4 bits (201), Expect = 3e-16
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Query: 356 PIPLFQPKSFS-HSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTF 414
PIP+ K F+ ++ Q + + +GER M D L F L G+PP G + EVTF
Sbjct: 392 PIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTF 451
Query: 415 DLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAA 474
+DA+GIL+VSA + + + I ++ + G + K +ID ML A K D R A
Sbjct: 452 AIDADGILSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEA 510
Query: 475 KNKLESYAFAVKQAAEDSGSKLSDADKTSVS 505
+ E+ F +++A + + LS+++ + ++
Sbjct: 511 VIEAEALIFNIERAIAELTTLLSESEISIIN 541
Score = 57.9 bits (140), Expect = 7e-09
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I EG +FQV +T GD LGG D D + + ++F + D L
Sbjct: 208 SILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTL----------QL 256
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
++AK TL+ + S D + I + E+L + L +T+ + L A
Sbjct: 257 AKKAKETLTY--KDSFNNDNIS--------INKQTLEQLILPLVERTINIAQECLEQAGN 306
Query: 126 DKGSIHDVVLVGGSIRIPKIQKML 149
I V+LVGG+ RIP I+ L
Sbjct: 307 PN--IDGVILVGGATRIPLIKDEL 328
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 55.2 bits (134), Expect = 4e-08
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 61 RLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERAL 120
RL A E AK LSS E +++D + G++ + +TRA FE + A V+ AL
Sbjct: 302 RLARAVEAAKIALSSQDETRIDLDFVEVGLE--APVTRAEFEGAIAPDLERIEAAVDEAL 359
Query: 121 NDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
A + +I V L GGS +P +++
Sbjct: 360 AQAGVSPDAIDRVFLTGGSSLVPAVRQAFA 389
Score = 41.0 bits (97), Expect = 0.001
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFF 220
+TRA FE + A V+ AL A + +I V L GGS +P +++ F
Sbjct: 335 VTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARF 392
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 42.7 bits (101), Expect = 4e-04
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 174 DLFRQTLAPVERALNDA-----KLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 228
DL R L V AL D+ + I + L+GG + P ++ML D F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFG-----TP 417
Query: 229 I---NPDEAVAYGAAVQAAILSG 248
+ +E A GAA+ AA G
Sbjct: 418 VDVPEGEEGPALGAAILAAWALG 440
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 42.7 bits (101), Expect = 4e-04
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 172 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 231
+DL R L+GG + P ++++ D N + +
Sbjct: 384 GLDLLRALGLKSTEIR--------------LIGGGAKSPAWRQIIADIMNAEVVVPDT-- 427
Query: 232 DEAVAYGAAVQAA-ILSGDTSSAIQDVLLVD 261
+EA A GAA+QAA L+G+ + + L D
Sbjct: 428 EEAAALGAAIQAAWCLTGEDGADVALAELCD 458
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 35.8 bits (83), Expect = 0.056
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 40/169 (23%)
Query: 91 DFYSKITRARFEELCMDLFRQTLAPVE--RALNDAKLD-----------KGSIHDVVLVG 137
D Y I ++ R L + + LD GS + G
Sbjct: 286 DRYYLIAGLPSGGFAIEWLRNILGGEASSKRAQEKLLDSAALFYPYSRGSGSPIRSEIAG 345
Query: 138 GS---IRIPKIQKMLQIPPLIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK 194
G+ + Q+ ITR+ E L + R TL +E+
Sbjct: 346 GAFYGLTDTTSQED--------------ITRSVLEGLTFE-ARSTLECLEKL-------G 383
Query: 195 GSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQA 243
+V++GG R ++ GK + ++ E VA GAA+ A
Sbjct: 384 FEGSRIVVIGGGSRNKLWLQLKASVL-GKPIE-VLDEAELVALGAALLA 430
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 35.8 bits (83), Expect = 0.060
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 222
+ RA E + L L + L + V +VGG R P ++L D
Sbjct: 375 LARAVLEGVAFAL-ADGLEAL-EELGGKPPSR-----VRVVGGGARSPLWLQILADALG- 426
Query: 223 KSLNLSINPD-EAVAYGAAVQAAILSGDTSSAIQDVL 258
L + + EA A G A AA G + + L
Sbjct: 427 --LPVVVPEVEEAGALGGAALAAAALGGIYDSAEGAL 461
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 34.6 bits (80), Expect = 0.12
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 194 KGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSA 253
+ + L+GG + +++L D G + L N + A + GAA+ AA+ +GD +
Sbjct: 390 GTAPQRIKLIGGGAKSELWRQILADVL-GVPVELPANAEGA-SVGAALLAAVGAGDFADL 447
Query: 254 IQDVLLVDVAPLS 266
+ V P+
Sbjct: 448 NEAARTVRQLPVI 460
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 33.7 bits (78), Expect = 0.26
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 60 RRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERA 119
R +R+A E AK LS E +D + +G+ ++I++ EE + L V+ A
Sbjct: 336 RLVRSA-EEAKIALSDQAETRASLDFISDGLA--TEISQQGLEEAISQPLARILELVQLA 392
Query: 120 LNDAKLDKGSIHDVV-LVGGSIRIPKIQKMLQ 150
L+ A DV+ L GGS R P I+ L
Sbjct: 393 LDQA----QVKPDVIYLTGGSARSPLIRAALA 420
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system. A
number of bacteria obtain nitrogen by biotin- and
ATP-dependent urea degradation system distinct from
urease. The two characterized proteins of this system
are the enzymes urea carboxylase and allophanate
hydrolase, but other, uncharacterized proteins co-occur
as genes encoded nearby in multiple organisms. This
family includes predicted permeases of the amino acid
permease family, likely to transport either urea or a
compound from which urea is derived. It is found so far
only Actinobacteria, whereas a number of other species
with the urea carboxylase have an adjacent ABC
transporter operon.
Length = 475
Score = 33.7 bits (77), Expect = 0.29
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 245 ILSGDTSSAIQDVLLVDVA----PLSLGIETAGGVMTKIVERNSRIPCKQQQTFTEQPSK 300
+LS S VLLVDVA +L I+TAG + + R+ ++P + Q S+
Sbjct: 288 VLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLP------ASAQLSR 341
Query: 301 LPSSVETPVLPS 312
+ TP+LPS
Sbjct: 342 VHPRTGTPILPS 353
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 32.3 bits (74), Expect = 0.36
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 222
+ RA E L + L RQ L AL + I GG R P + ++L D
Sbjct: 119 LYRALLEGLALAL-RQIL----EALAELGAPIDRII---ASGGGSRNPLLLQLLADALG- 169
Query: 223 KSLNLSIN-PDEAVAYGAAVQAAI 245
+ + EA A GAA+ AA+
Sbjct: 170 --RPVEVPETAEATALGAALLAAV 191
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 32.2 bits (74), Expect = 0.62
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 22/111 (19%)
Query: 145 IQKMLQIPPL-------IFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSI 197
++ +++P + + R S+I AR EE+ ++L V+ L + L
Sbjct: 270 DEETIEVPSVGSDIPRQVTRSELSEIIEARVEEI-LEL-------VKAELRKSGLPNHLP 321
Query: 198 HDVVLVGGSIRIPKIQKMLQDFF-----NGKSLNLSINPDEAV--AYGAAV 241
VVL GG ++P I ++ + F G LN+ D A A+ AV
Sbjct: 322 GGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
Score = 30.3 bits (69), Expect = 2.5
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 94 SKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKI----QKML 149
S+I AR EE+ ++L V+ L + L VVL GG ++P I +++
Sbjct: 293 SEIIEARVEEI-LEL-------VKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIF 344
Query: 150 QIP-----PLIFRDFYSKITRARFEELCM 173
P PL F
Sbjct: 345 GRPVRLGVPLNIVGLTDIARNPAFSTAVG 373
>gnl|CDD|131404 TIGR02351, thiH, thiazole biosynthesis protein ThiH. Members this
protein family are the ThiH protein of thiamine
biosynthesis, a homolog of the BioB protein of biotin
biosynthesis. Genes for the this protein generally are
found in operons with other thiamin biosynthesis genes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 366
Score = 31.2 bits (71), Expect = 1.2
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 91 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
F +I +EE+ D++ T A VERALN S+ D + + P +++M Q
Sbjct: 1 TFKDEIEDILWEEVSYDIYSFTAADVERALNK---RHLSLEDFLALLSPAAEPYLEEMAQ 57
Query: 151 IPPLIFRDFYSKITRARF 168
K+TR RF
Sbjct: 58 KA--------KKLTRKRF 67
Score = 30.8 bits (70), Expect = 1.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD 193
F +I +EE+ D++ T A VERALN L
Sbjct: 1 TFKDEIEDILWEEVSYDIYSFTAADVERALNKRHLS 36
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 31.2 bits (71), Expect = 1.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 430 STGKAERITIQNDKGRLSKD--DIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAV 485
GKA++ I++ K L D + LAE +K D K+ E A + FAV
Sbjct: 226 KEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGDLKNFAV 283
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 30.7 bits (70), Expect = 2.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 185 RALNDAKL-DKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVA-YGA-AV 241
+AL D L K ++ G + + +KM KS ++P+EAV YGA V
Sbjct: 549 KALFDEGLVPKDEPFKKLITQGMVLGEEGEKM------SKSKGNVVDPEEAVEKYGADTV 602
Query: 242 QAAILS 247
+ I+
Sbjct: 603 RLYIMF 608
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 27.6 bits (62), Expect = 3.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 432 GKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 479
KAER + +L+K + DR+ E +K KA+++ + R K KL+
Sbjct: 22 NKAERQARREA--KLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLK 67
>gnl|CDD|218286 pfam04840, Vps16_C, Vps16, C-terminal region. This protein forms
part of the Class C vacuolar protein sorting (Vps)
complex. Vps16 is essential for vacuolar protein
sorting, which is essential for viability in plants, but
not yeast. The Class C Vps complex is required for
SNARE-mediated membrane fusion at the lysosome-like
yeast vacuole. It is thought to play essential roles in
membrane docking and fusion at the Golgi-to-endosome and
endosome-to-vacuole stages of transport. The role of
VPS16 in this complex is not known.
Length = 319
Score = 29.7 bits (67), Expect = 3.5
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 19/107 (17%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVE---------RALNDAKLDKGSIHDVVLVGGSIR 208
DFY+ F++L F+Q E +A + K S + L+ ++
Sbjct: 102 DFYN--QDDDFQDLAHFHFQQAETEKEQEGRHSALPQAKDAYSQVKNSELEEKLIEDQLK 159
Query: 209 IPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQ 255
+ ++Q+ L+D F G +LS++ V IL G T A Q
Sbjct: 160 LLRLQETLEDRFAGSFTDLSVH--------DTVSKLILIGQTKRAEQ 198
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 29.9 bits (68), Expect = 4.5
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 40 FADEFKRKHKKDILANTRAVRRLRTAC------ERAKRTLSSSTEASL-------EIDAL 86
F + + R R +R ERA + + SS EA+ E+ A
Sbjct: 819 FPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAPTVYIADPELLAA 878
Query: 87 HEGIDF 92
EG+DF
Sbjct: 879 LEGLDF 884
>gnl|CDD|236425 PRK09240, thiH, thiamine biosynthesis protein ThiH; Reviewed.
Length = 371
Score = 29.4 bits (67), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 91 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD 126
FY + + +++L + + +T A VERALN +L
Sbjct: 2 SFYDEWRQLDWDDLRLRINSKTAADVERALNKDRLS 37
Score = 29.4 bits (67), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD 193
FY + + +++L + + +T A VERALN +L
Sbjct: 2 SFYDEWRQLDWDDLRLRINSKTAADVERALNKDRLS 37
>gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Aspartate
transcarbamylase (ATCase) is an alternate name.PyrB
encodes the catalytic chain of aspartate
carbamoyltransferase, an enzyme of pyrimidine
biosynthesis, which organizes into trimers. In some
species, including E. coli and the Archaea but excluding
Bacillus subtilis, a regulatory subunit PyrI is also
present in an allosterically regulated hexameric
holoenzyme. Several molecular weight classes of ATCase
are described in MEDLINE:96303527 and often vary within
taxa. PyrB and PyrI are fused in Thermotoga
maritima.Ornithine carbamoyltransferases are in the same
superfamily and form an outgroup [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 301
Score = 28.9 bits (65), Expect = 6.0
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAF 483
LS+++I+ +L A + + + + K K+ + F
Sbjct: 9 LSREEIELLLETARELEQVLNGKEPLKLLKGKILANLF 46
>gnl|CDD|213874 TIGR03857, F420_MSMEG_2249, probable F420-dependent oxidoreductase,
MSMEG_2249 family. Coenzyme F420 has a limited
phylogenetic distribution, including methanogenic
archaea, Mycobacterium tuberculosis and related species,
Colwellia psychrerythraea 34H, Rhodopseudomonas
palustris HaA2, and others. Partial phylogenetic
profiling identifies protein subfamilies, within the
larger family called luciferase-like monooxygenanases
(pfam00296), that appear only in F420-positive genomes
and are likely to be F420-dependent. This model
describes a distinctive subfamily, found only in
F420-biosynthesizing members of the Actinobacteria of
the bacterial luciferase-like monooxygenase (LLM)
superfamily [Unknown function, Enzymes of unknown
specificity].
Length = 329
Score = 29.0 bits (65), Expect = 6.7
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 27 LGGEDFDNRLV-TFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSS 75
L G FD ++ F E A R+V +R A E A R +S
Sbjct: 166 LAGRAFDGVILHPFLTPE----------AVARSVAIVRRAAEAAGRDPAS 205
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 28.6 bits (64), Expect = 7.5
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 433 KAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDS 492
AE+ Q ++ ++ + EA+ +A + K + A+ K + A KQA E++
Sbjct: 99 AAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAK--EEAKKQAEEEA 156
Query: 493 GSKLSDADK 501
+K + K
Sbjct: 157 KAKAAAEAK 165
>gnl|CDD|221736 pfam12724, Flavodoxin_5, Flavodoxin domain. This is a family of
flavodoxins. Flavodoxins are electron transfer proteins
that carry a molecule of non-covalently bound FMN.
Length = 141
Score = 27.6 bits (62), Expect = 9.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 199 DVVLVGGSIRIPKIQKMLQDF 219
D V++G SIR KI L F
Sbjct: 43 DAVIIGASIRYGKILPELAKF 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,928,880
Number of extensions: 2653025
Number of successful extensions: 3048
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2955
Number of HSP's successfully gapped: 115
Length of query: 535
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 433
Effective length of database: 6,413,494
Effective search space: 2777042902
Effective search space used: 2777042902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)