RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4003
(535 letters)
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 299 bits (767), Expect = 5e-97
Identities = 111/145 (76%), Positives = 129/145 (88%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I++G +F+VKSTAGDTHLGGEDFDNR+V+ A+EFKRKHKKDI N RAVRRLRTA
Sbjct: 229 SILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTA 287
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
CERAKRTLSSST+AS+EID+L+EG+DFY+ ITRARFEEL DLFR TL PVE+AL DAKL
Sbjct: 288 CERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKL 347
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
DKG I ++VLVGGS RIPKIQK+LQ
Sbjct: 348 DKGQIQEIVLVGGSTRIPKIQKLLQ 372
Score = 208 bits (533), Expect = 2e-62
Identities = 75/92 (81%), Positives = 80/92 (86%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
DFY+ ITRARFEEL DLFR TL PVE+AL DAKLDKG I ++VLVGGS RIPKIQK+LQ
Sbjct: 313 DFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQ 372
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILSGD 249
DFFNGK LN SINPDEAVAYGAAVQAAIL GD
Sbjct: 373 DFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 298 bits (766), Expect = 5e-97
Identities = 72/145 (49%), Positives = 106/145 (73%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L+I+ G +F+V++T+GDTHLGGEDFD ++V FK+KH D+ N +A+ +L+
Sbjct: 221 SLLSIENG-VFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKRE 279
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
E+AKR LSS +EID+ +GID +TRA+FEEL +DLF++TL PVE+ L D+ L
Sbjct: 280 AEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGL 339
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
+K + D+VLVGGS RIPK+Q++L+
Sbjct: 340 EKKDVDDIVLVGGSTRIPKVQQLLE 364
Score = 203 bits (520), Expect = 1e-60
Identities = 53/90 (58%), Positives = 71/90 (78%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D +TRA+FEEL +DLF++TL PVE+ L D+ L+K + D+VLVGGS RIPK+Q++L+
Sbjct: 305 DLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLE 364
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILS 247
+F+GK + INPDEAVAYGAAVQA +LS
Sbjct: 365 SYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 295 bits (757), Expect = 1e-93
Identities = 113/145 (77%), Positives = 125/145 (86%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I G +F+VKSTAGDTHLGGEDFDNR+V F EFKRKHKKDI N RAVRRLRTA
Sbjct: 208 SILTIAAG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTA 266
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
CERAKRTLSSST+AS+EID+L+EGIDFY+ ITRARFEEL DLFR TL PVE+AL DAKL
Sbjct: 267 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 326
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
DK IHD+VLVGGS RIPKIQK+LQ
Sbjct: 327 DKSQIHDIVLVGGSTRIPKIQKLLQ 351
Score = 292 bits (751), Expect = 1e-92
Identities = 108/138 (78%), Positives = 119/138 (86%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
DFY+ ITRARFEEL DLFR TL PVE+AL DAKLDK IHD+VLVGGS RIPKIQK+LQ
Sbjct: 292 DFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQ 351
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMT 277
DFFNGK LN SINPDEAVAYGAAVQAAILSGD S +QD+LL+DV PLSLGIETAGGVMT
Sbjct: 352 DFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMT 411
Query: 278 KIVERNSRIPCKQQQTFT 295
+++RN+ IP KQ QTFT
Sbjct: 412 VLIKRNTTIPTKQTQTFT 429
Score = 252 bits (645), Expect = 5e-77
Identities = 96/136 (70%), Positives = 113/136 (83%), Gaps = 1/136 (0%)
Query: 356 PIPLFQPKSFS-HSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTF 414
IP Q ++F+ +S Q V IQV+EGERAMTKDNNLLG F LTGIPPAPRGVP+IEVTF
Sbjct: 419 TIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 478
Query: 415 DLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAA 474
D+DANGILNVSA D STGK +ITI NDKGRLSK+DI+RM+ EAEKYKAED+KQR++V++
Sbjct: 479 DIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSS 538
Query: 475 KNKLESYAFAVKQAAE 490
KN LESYAF +K E
Sbjct: 539 KNSLESYAFNMKATVE 554
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 278 bits (714), Expect = 5e-86
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S++A +G +V TA D H GG DFD + FADEFK K+K DI N +A R+ TA
Sbjct: 212 SIMAFKKG-QLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTA 270
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
E+ K+ LS++T A ++++ +D S+++R EEL L + PV +AL AKL
Sbjct: 271 AEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKL 330
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
+ V ++GG+ RIP +++ +
Sbjct: 331 SAEEVDFVEIIGGTTRIPTLKQSIS 355
Score = 249 bits (638), Expect = 5e-75
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 158 DFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 217
D S+++R EEL L + PV +AL AKL + V ++GG+ RIP +++ +
Sbjct: 296 DVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSIS 355
Query: 218 DFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGV-- 275
+ F GK L+ ++N DEA+A GAA AI S ++ D+ P S+ V
Sbjct: 356 EAF-GKPLSTTLNQDEAIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVED 412
Query: 276 --MTKIVERNSRIPCKQQQTFT 295
++ S P + T
Sbjct: 413 EDHMEVFPAGSSFPSTKLITLN 434
Score = 236 bits (604), Expect = 5e-70
Identities = 34/196 (17%), Positives = 74/196 (37%), Gaps = 18/196 (9%)
Query: 355 NPIPLFQPKSFS-HSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGI--PPAPRGVPKIE 411
+ P + + + + A + T + + + +TG+ P VP ++
Sbjct: 423 SSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP-VK 479
Query: 412 VTFDLDANGILNVS----------AKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKY 461
+ D +G+ + D+ T K + +TI L ++ ++ + +
Sbjct: 480 LKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEM 539
Query: 462 KAEDDKQRERVAAKNKLESYAFAVKQAAEDS-GSKLSDADKTSVSQACSATLTWL-EGNS 519
A+D E KN LE Y + ++ E+ SDA+KT + + WL +
Sbjct: 540 LAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGF 599
Query: 520 LAEKEEFEDRLKTLQQ 535
+ K ++ + + L
Sbjct: 600 DSIKAKYIAKYEELAS 615
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 240 bits (615), Expect = 7e-78
Identities = 81/124 (65%), Positives = 106/124 (85%), Gaps = 1/124 (0%)
Query: 357 IPLFQPKSFS-HSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFD 415
IP K+F+ ++ Q V+IQV+EGERAMT+DN+ LGTF L+GIPPAPRGVP+IEVTF+
Sbjct: 29 IPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFN 88
Query: 416 LDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAK 475
+DANGILNVSA+D STGK+ RITIQN+KGRL++ DIDRM+ EA++++ ED +QRERV A+
Sbjct: 89 IDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQAR 148
Query: 476 NKLE 479
N+LE
Sbjct: 149 NQLE 152
Score = 79.9 bits (198), Expect = 5e-18
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 261 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
DVAPLSLGIETAGGVMT +++RN+RIP K +TFT
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFT 38
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 239 bits (613), Expect = 1e-77
Identities = 78/124 (62%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
Query: 357 IPLFQPKSFS-HSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFD 415
IP + + FS Q V I+V+EGERAM+KDNNLLG F LTGIPPAPRGVP+IEVTF
Sbjct: 29 IPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVPQIEVTFA 88
Query: 416 LDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAK 475
LDANGIL VSA D TGK+E ITI NDKGRL++++IDRM+ EAEK+ +ED + +V ++
Sbjct: 89 LDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESR 148
Query: 476 NKLE 479
NKLE
Sbjct: 149 NKLE 152
Score = 79.9 bits (198), Expect = 5e-18
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 261 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
DV L+LGIET GGVMT +++RN+ IP K+ Q F+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFS 38
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 237 bits (607), Expect = 1e-76
Identities = 66/124 (53%), Positives = 95/124 (76%), Gaps = 1/124 (0%)
Query: 357 IPLFQPKSFS-HSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFD 415
IP + + FS + Q+AV+I ++EGER M DN+ LG F++TGIPPAPRGVP+IEVTF+
Sbjct: 29 IPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFE 88
Query: 416 LDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAK 475
+D NGIL+VSA+D TG ++TI ND RLS +DI+RM+ +A+K+ A+D Q+E+V ++
Sbjct: 89 IDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESR 148
Query: 476 NKLE 479
N+LE
Sbjct: 149 NELE 152
Score = 79.2 bits (196), Expect = 1e-17
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 261 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
DV PL+LGIET GGVMTK++ RN+ IP K+ Q F+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFS 38
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 205 bits (523), Expect = 4e-63
Identities = 73/165 (44%), Positives = 107/165 (64%), Gaps = 4/165 (2%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q+AVTI V +GER DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAKD +
Sbjct: 45 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 104
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
+GK ++ITI+ G L++D+I +M+ +AE D K E V +N+ + + ++ E
Sbjct: 105 SGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVE 163
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
++G KL DKT++ A +A T L+G +K E +++ L Q
Sbjct: 164 EAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQ 205
Score = 73.8 bits (182), Expect = 3e-15
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 257 VLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
VLL+DV PLSLGIET GGVMT ++ +N+ IP K Q F+
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFS 39
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 206 bits (527), Expect = 1e-59
Identities = 73/165 (44%), Positives = 106/165 (64%), Gaps = 4/165 (2%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q+AVTI V +GER DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAKD +
Sbjct: 433 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 492
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
+GK ++ITI+ G L++D+I +M+ +AE D K E V +N+ + + ++ E
Sbjct: 493 SGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVE 551
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
++G KL DKT++ A +A T L+G K E +++ L Q
Sbjct: 552 EAGDKLPADDKTAIESALTALETALKGED---KAAIEAKMQELAQ 593
Score = 197 bits (503), Expect = 3e-56
Identities = 69/134 (51%), Positives = 92/134 (68%), Gaps = 5/134 (3%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
K+TRA+ E L DL +++ P++ AL DA L I DV+LVGG R+P +QK + +FF
Sbjct: 299 KVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF- 357
Query: 222 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVE 281
GK +NPDEAVA GAAVQ +L+GD ++DVLL+DV PLSLGIET GGVMT ++
Sbjct: 358 GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 282 RNSRIPCKQQQTFT 295
+N+ IP K Q F+
Sbjct: 414 KNTTIPTKHSQVFS 427
Score = 157 bits (399), Expect = 9e-42
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 11/154 (7%)
Query: 6 SVLAIDEGS---LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRL 62
S++ IDE F+V +T GDTHLGGEDFD+RL+ + +EFK+ D+ + A++RL
Sbjct: 203 SIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRL 262
Query: 63 RTACERAKRTLSSS--TEASLE-IDALHEG---IDFYSKITRARFEELCMDLFRQTLAPV 116
+ A E+AK LSS+ T+ +L I A G ++ K+TRA+ E L DL +++ P+
Sbjct: 263 KEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNI--KVTRAKLESLVEDLVNRSIEPL 320
Query: 117 ERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
+ AL DA L I DV+LVGG R+P +QK +
Sbjct: 321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVA 354
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 190 bits (485), Expect = 2e-57
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q A++I V +GER + +D L F L GIP P G I VTF +DA+G+L+V+A + S
Sbjct: 42 QTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKS 101
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TG I ++ G L+ +I M+ ++ Y +D K R K + ++ A
Sbjct: 102 TGVEASIQVKPSYG-LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA 160
Query: 491 DSGSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
+ LS A++ + A + +G+ + + E +K + +
Sbjct: 161 ADAALLSAAERQVIDDAAAHLSEVAQGD---DVDAIEQAIKNVDK 202
Score = 68.7 bits (169), Expect = 2e-13
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 261 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
DV PLSLG+ET GG++ K++ RN+ IP + Q FT
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFT 36
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 195 bits (499), Expect = 2e-56
Identities = 67/142 (47%), Positives = 93/142 (65%), Gaps = 9/142 (6%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
+TRA+FEEL L +T+ PV +AL DA L I V+LVGGS RIP +Q+ ++
Sbjct: 268 TLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL- 326
Query: 222 GKSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVE 281
GK + +NPDE VA GAA+Q +++G+ ++DV+L+DV PLSLGIET GGV TK++E
Sbjct: 327 GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIE 382
Query: 282 RNSRIPCKQQQTFT----EQPS 299
RN+ IP + Q FT Q +
Sbjct: 383 RNTTIPTSKSQVFTTAADNQTT 404
Score = 182 bits (463), Expect = 2e-51
Identities = 58/109 (53%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q V I V +GER M DN LG F LTGIPPAPRGVP+IEVTFD+DANGI++V AKD
Sbjct: 402 QTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDLG 461
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 479
T K + ITI++ G LS+++I RM+ EAE+ D K++E +N+ +
Sbjct: 462 TNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
Score = 160 bits (407), Expect = 2e-43
Identities = 61/149 (40%), Positives = 95/149 (63%), Gaps = 5/149 (3%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L + +G +F+VK+TAGD HLGG+DFD ++ + ++FK++H D+ + A++RL+ A
Sbjct: 176 SILELGDG-VFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDA 234
Query: 66 CERAKRTLSSSTEASLE---IDALHEG-IDFYSKITRARFEELCMDLFRQTLAPVERALN 121
E+AK+ LS T+ + I A G + +TRA+FEEL L +T+ PV +AL
Sbjct: 235 AEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQ 294
Query: 122 DAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
DA L I V+LVGGS RIP +Q+ ++
Sbjct: 295 DAGLTPADIDKVILVGGSTRIPAVQEAIK 323
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 183 bits (468), Expect = 1e-55
Identities = 67/120 (55%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q V I+V +GER M DN LLG F L GIPPAPRGVP+IEVTFD+DANGI++VSAKD
Sbjct: 64 QTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKG 123
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
TG+ ++I IQ+ G LSKDDI+ M+ AEKY ED +++ERV A N E + E
Sbjct: 124 TGREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
Score = 82.3 bits (204), Expect = 2e-18
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 242 QAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
L + +DV PLSLGIET GGV TK++ RN+ IP K+ Q F+
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFS 58
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 175 bits (447), Expect = 5e-53
Identities = 65/109 (59%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q V I+VF+GER M N LLG F+L GIPPAPRGVP++EVTFD+DANGI+NVSA+D
Sbjct: 44 QTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRG 103
Query: 431 TGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLE 479
TGK ++I IQ+ G LSKD I+ M+ EAEK AED K++E V N+ E
Sbjct: 104 TGKEQQIVIQSSGG-LSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151
Score = 66.2 bits (162), Expect = 4e-13
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 261 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
DV PLSLGIET GG+MTK++ RN+ IP K+ Q F+
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFS 38
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 161 bits (411), Expect = 6e-45
Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 19/158 (12%)
Query: 6 SVLAIDEGS---LFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRL 62
S++ IDE F+V +T GDTHLGGEDFD+RL+ + +EFK+ D+ + A++RL
Sbjct: 203 SIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRL 262
Query: 63 RTACERAKRTLSSSTEASLEI-------DA---LHEGIDFYSKITRARFEELCMDLFRQT 112
+ A E+AK LSS+ + ++ DA H I K+TRA+ E L DL ++
Sbjct: 263 KEAAEKAKIELSSAQQT--DVNLPYITADATGPKHMNI----KVTRAKLESLVEDLVNRS 316
Query: 113 LAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
+ ++ AL DA L I DV+LVGG R+P +QK +
Sbjct: 317 IELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVA 354
Score = 129 bits (326), Expect = 3e-33
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
K+TRA+ E L DL +++ ++ AL DA L I DV+LVGG R+P +QK + +FF
Sbjct: 299 KVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF- 357
Query: 222 GKSLNLSINPDEAVAYGAAVQAAILS 247
GK +NPDEAVA GAAVQ +L+
Sbjct: 358 GKEPRKDVNPDEAVAIGAAVQGGVLT 383
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 134 bits (339), Expect = 1e-37
Identities = 46/74 (62%), Positives = 58/74 (78%)
Query: 371 QNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSS 430
Q+AVTI V +GER DN LG FNL GI PAPRG+P+IEVTFD+DA+GIL+VSAKD +
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 431 TGKAERITIQNDKG 444
+GK ++ITI+ G
Sbjct: 121 SGKEQKITIKASSG 134
Score = 78.9 bits (195), Expect = 7e-18
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 238 GAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
G++ + +VDV PLSLGIET GGVMT ++ +N+ IP K Q F+
Sbjct: 2 GSSHHHHHHGLV----PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFS 55
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 96.2 bits (239), Expect = 6e-24
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 458 AEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWL 515
+ + + LESYAF +KQ ED K+S DK + C L WL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 516 EGNSLAEKEEFEDRLKTLQQ 535
+ N AEKEEFE + K L+
Sbjct: 63 DSNQTAEKEEFEHQQKDLEG 82
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 83.8 bits (207), Expect = 1e-19
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 466 DKQRERVAAKNKLESYAFAVKQAAEDSG--SKLSDADKTSVSQACSATLTWLEGNSLAEK 523
+ ERV+AKN LESYAF +K A ED G K+S+ADK V C ++WL+ N+LAEK
Sbjct: 2 NAAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEK 61
Query: 524 EEFEDRLKTLQQ 535
+EFE + K L+Q
Sbjct: 62 DEFEHKRKELEQ 73
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 71.9 bits (176), Expect = 1e-15
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 471 RVAAKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFED 528
+ LESYAF +K ED K++D DK + C+ ++WL+ N AEKEEFE
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 529 RLKTLQQ 535
+ K L++
Sbjct: 62 QQKELEK 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 1e-09
Identities = 83/536 (15%), Positives = 158/536 (29%), Gaps = 134/536 (25%)
Query: 24 DTHLGGEDFDNR-LVTFFADEFKRKHK-KDILANTRAV---------RRLRTACERAKR- 71
D G + + +++ F D F KD+ +++ + A R
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 72 --TLSSSTEASLEI---DALHEGIDF-YSKI-TRARFEELCMDLFRQTLAPVERALNDA- 123
TL S E ++ + L F S I T R + ++ + +R ND
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDNQ 124
Query: 124 KLDKGSIHDVVLVGGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELC-MDLF-RQTLA 181
K ++ ++Q L++ R ++ A+ + + + +A
Sbjct: 125 VFAKYNV------------SRLQPYLKL-----RQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 182 PVERALNDAKLDK---GSIHDVVLVGGSIRIPK-IQKMLQDFFNGKSLNLSINPDEAVAY 237
++ K+ I + L + P+ + +MLQ N + D +
Sbjct: 168 -LD-VCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 238 ---GAAVQAAILSGDTSSAIQDVLLV--DV------APLSLG----IETA-GGVMTKIVE 281
++QA + S ++ LLV +V +L + T V +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 282 RNSRIPC--KQQQTFTEQPSK--LPSSVETPV--LPSKMSCWPDAIGGQLRFTPECCHYS 335
+ T T K L ++ LP E +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----------------REVLTTN 326
Query: 336 ELSIMYVG-----NITTWRTNSHFNPIPLFQPKSFSHSRYQNAV--TIQVFEGE--RAMT 386
+ + + TW H N + + ++ V E R M
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVN-----------CDKLTTIIESSLNVLEPAEYRKMF 375
Query: 387 KDNNLLGTFNL-TGIPPAPRGVPKI---EVTFDLDANGILNVSAKDSSTGKAERITIQND 442
L F IP + + +V D ++N K S E+ Q
Sbjct: 376 DR---LSVFPPSAHIPTI---LLSLIWFDVIKS-DVMVVVNKLHKYSL---VEK---QPK 422
Query: 443 KGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSD 498
+ +S I L K K E++ R ++ Y ++D D
Sbjct: 423 ESTISIPSIYLEL----KVKLENEYALHRSI----VDHYNIPKTFDSDDLIPPYLD 470
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 7e-09
Identities = 90/522 (17%), Positives = 148/522 (28%), Gaps = 204/522 (39%)
Query: 24 DTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEI 83
+ +L G D + A + +++ ++ ++ TA AKR + ++L
Sbjct: 93 NCYLEGND-----IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-F 146
Query: 84 DALHEG-IDFYSK-----ITRARFEEL-------------CMDLFRQTLAPVERALNDAK 124
A+ EG + T FEEL + +TL+ + R DA+
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 125 ------LD-------KGSIHDV-VLVGGSIRIPKI---Q--------KMLQIPPLIFRDF 159
L+ + D L+ I P I Q K+L P R +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 160 YSKIT-----------------RARFEELCMD----LF----R-QTLAPV----ERALND 189
T F LF R P L D
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 190 AKLDKG--------SIHDVVLVGGSIRIPKIQKMLQDFFN-----GKSLNLS-IN-PDEA 234
+ L+ SI + + ++Q + + N GK + +S +N
Sbjct: 327 S-LENNEGVPSPMLSISN-------LTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNL 377
Query: 235 VAYGAAVQAAILSGDTSSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQT- 293
V +SG P SL G+ + R ++ P Q+
Sbjct: 378 V----------VSG--------------PPQSL-----YGLNLTL--RKAKAPSGLDQSR 406
Query: 294 --FTEQPSK-----LPSSV--ETPVL-PSKMSCWPDAIGGQLRFTPECCHYSELSI---- 339
F+E+ K LP + + +L P+ D + + F ++ I
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-----KDIQIPVYD 461
Query: 340 --------MYVGNITT------------WRTNSHFNP--IPLFQPKSFSHSRYQNAVTIQ 377
+ G+I+ W T + F I F P S
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS----------- 510
Query: 378 VFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDLDAN 419
G +T N G GV I LD N
Sbjct: 511 ---GLGVLTHR-------NKDG-----TGVRVIVAG-TLDIN 536
Score = 49.3 bits (117), Expect = 3e-06
Identities = 36/218 (16%), Positives = 56/218 (25%), Gaps = 84/218 (38%)
Query: 89 GIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK--G-SIHDVVLVGGSIRIPKI 145
G+D Y A+ D++ RA D G SI D+V+ P
Sbjct: 1632 GMDLYKTSKAAQ------DVW-------NRA--DNHFKDTYGFSILDIVINN-----PVN 1671
Query: 146 QKMLQIPPLIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGG 205
+ F K R + + + E+ + S
Sbjct: 1672 LTIH------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT------- 1718
Query: 206 SIRIPKIQKMLQDFFNG--KSLNLSINPDEAVAYGAAVQAAILSGDTSSAIQDVL----L 259
F L+ + Q A+ A + L L
Sbjct: 1719 --------------FRSEKGLLSATQF----------TQPALTL--MEKAAFEDLKSKGL 1752
Query: 260 VD----VAPLSLGIE-TA----GGVMT-----KIV-ER 282
+ A SLG E A VM+ ++V R
Sbjct: 1753 IPADATFAGHSLG-EYAALASLADVMSIESLVEVVFYR 1789
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 44.8 bits (105), Expect = 4e-05
Identities = 9/84 (10%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
+I + + + L +E+ + + + V+++GG + I ++
Sbjct: 238 RINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQ 295
Query: 222 --GKSLNLSINPDEAVAYGAAVQA 243
+ + N + G +
Sbjct: 296 IRDERFFKTNNSQYDLVNGMYLIG 319
Score = 42.9 bits (100), Expect = 2e-04
Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 29/151 (19%)
Query: 8 LAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACE 67
++ G L + GD+ LG + +
Sbjct: 178 ISQVMGKLSGISKIYGDSSLGVSLVTSAVKDAL--------------------------- 210
Query: 68 RAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK 127
RT SS A I + +I + + + L +E+ + + +
Sbjct: 211 SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEF 270
Query: 128 GSIHDVVLVGGSIRI--PKIQKMLQIPPLIF 156
V+++GG + ++K QI F
Sbjct: 271 SGYTHVMVIGGGAELICDAVKKHTQIRDERF 301
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 41.0 bits (97), Expect = 4e-04
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 162 KITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFN 221
K +R E+ M + R + + + + + V +VGG+ + + F
Sbjct: 193 KKDFSRHREI-MRVVRPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL- 250
Query: 222 GKSLNLSINPDEAVAYGAAVQA 243
GK + + I+P G A+
Sbjct: 251 GKEVQVPIHPLLVTPLGIALFG 272
Score = 29.9 bits (68), Expect = 1.7
Identities = 19/139 (13%), Positives = 32/139 (23%), Gaps = 49/139 (35%)
Query: 21 TAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEAS 80
D GG L + F A E K+ S E
Sbjct: 163 ATFDEPTGGTHLSLVLAGSYKIPF------------------EEA-ETIKKDFSRHREIM 203
Query: 81 LEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSI 140
+ + E + + I + + QTL V +VGG+
Sbjct: 204 RVVRPVIEKM---ALIVKEVIKNY-----DQTLP------------------VYVVGGTA 237
Query: 141 RIPKIQKMLQ----IPPLI 155
+ + +
Sbjct: 238 YLTGFSEEFSRFLGKEVQV 256
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 40.1 bits (94), Expect = 0.001
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 172 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 231
C++L R A + R ++L+GG + I+ + G +
Sbjct: 414 CLELIRSLGASITR--------------ILLIGGGAKSEAIRTLAPSIL-GMDVTR-PAT 457
Query: 232 DEAVAYGAAVQAAILSGDTSS 252
DE VA GAA QAA + +
Sbjct: 458 DEYVAIGAARQAAWVLSGETE 478
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.004
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 424 VSAKDSSTGKAERIT---IQNDKGRLSKDD------IDRMLAEAEKYKAEDDKQRERVAA 474
++ D T + E I + K RL + D +A+K E ++++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 475 KNKLESYAFAVKQAAEDSGSKLSDAD 500
KNK+ + + A+ + + DAD
Sbjct: 133 KNKINN------RIADKAFYQQPDAD 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.015
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 470 ERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVSQACSATL 512
E+ A K KL++ ++K A+DS L A AT+
Sbjct: 18 EKQALK-KLQA---SLKLYADDSAPAL----------AIKATM 46
Score = 31.8 bits (71), Expect = 0.26
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 209 IPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAI 245
+ K+Q SL L D A A A++A +
Sbjct: 22 LKKLQA---------SLKL-YADDSAPAL--AIKATM 46
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 36.4 bits (85), Expect = 0.024
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 172 CMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINP 231
MD+ + V L+GG R ++ML D G+ L+
Sbjct: 376 GMDVVHACGIKPQS--------------VTLIGGGARSEYWRQMLADIS-GQQLDYRTGG 420
Query: 232 DEAVAYGAAVQAAILSGDTSS 252
D A GAA A I + S
Sbjct: 421 DVGPALGAARLAQIAANPEKS 441
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 33.5 bits (76), Expect = 0.15
Identities = 5/80 (6%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 159 FYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQD 218
+ + + L + + + ++ +GG+ + +++ +
Sbjct: 241 KKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISK 298
Query: 219 FFNGKSLNLSINPDEAVAYG 238
+ + ++ N G
Sbjct: 299 TY-PNNSIITNNSQWTTCEG 317
Score = 33.1 bits (75), Expect = 0.21
Identities = 12/133 (9%), Positives = 30/133 (22%), Gaps = 30/133 (22%)
Query: 7 VLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTAC 66
+ S G +D R+ D + +++ N +A L
Sbjct: 186 FSLYRNCVV--NPSERFIEEHGVKDLIIRV----GDALTDLNNGNLITNEQAESALN--- 236
Query: 67 ERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLD 126
G + + + L + +
Sbjct: 237 ---------------------NGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFK 275
Query: 127 KGSIHDVVLVGGS 139
+ ++ +GG+
Sbjct: 276 LDQLDSLIFIGGT 288
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 33.4 bits (77), Expect = 0.19
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 192 LDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTS 251
L + + +VGG R +M+ D SL + + G A AA+ +
Sbjct: 398 LGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPDAHLHPLRGLAALAAVELEWSH 456
Query: 252 SAIQDVLLVDVAP 264
S + D+
Sbjct: 457 SIQDFLREADLRE 469
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 32.0 bits (72), Expect = 0.42
Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 137 GGSIRIPKIQKMLQIPPLIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGS 196
G SI I+K L+ + F + L + ++ E + + S
Sbjct: 235 GASITPRMIEKGLEYKQCKLNQKTVIDFKDEFYKEQDSLIEEVMSNFEITVGNIN----S 290
Query: 197 IHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAIL 246
I +++ GG I L ++ + + + G +L
Sbjct: 291 IDRIIVTGGGANI--HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELL 337
Score = 28.5 bits (63), Expect = 6.2
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 63 RTACERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALND 122
R A +K++ +S + L ++ T F++ + V
Sbjct: 224 RIASHVSKKSEGASITPRMIEKGLEYKQCKLNQKTVIDFKDEFYKEQDSLIEEVMSNFEI 283
Query: 123 AKLDKGSIHDVVLVGGSIRI--PKIQKMLQIPPLIFRD 158
+ SI +++ GG I + D
Sbjct: 284 TVGNINSIDRIIVTGGGANIHFDSLSHYYSDVFEKADD 321
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 32.3 bits (74), Expect = 0.42
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 155 IFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQK 214
S I AR E+ M ++ VE + + VVL GG +IP+I +
Sbjct: 289 TTAKKLSVIIHARLREI-MSKSKKFFREVEAKIVEEGEIGI-PGGVVLTGGGAKIPRINE 346
Query: 215 MLQDFFN 221
+ + F
Sbjct: 347 LATEVFK 353
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 31.6 bits (72), Expect = 0.78
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 195 GSIHDVVLVGG-SIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSSA 253
+H++ GG + + ++ D + + ++ + + A GAA+ A++ +G
Sbjct: 438 VEVHELYACGGLPQKNHLLMQIFADVT-NREIKVAAS-KQTPALGAAMFASVAAGSEVGG 495
Query: 254 IQDVLLVDVAPLSLGIETAGGVMTKIVER 282
IE A M ++ +
Sbjct: 496 YDS------------IEEAAKKMGRVKDE 512
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 30.7 bits (70), Expect = 1.4
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 163 ITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNG 222
+ R F+ L + L + + + +VGG + + ++ D
Sbjct: 367 LARCIFDSLALLY-ADVLHELAQLRG------EDFSQLHIVGGGCQNTLLNQLCADACG- 418
Query: 223 KSLNLSINPDEAVAYGAAVQAAILSGDTSS 252
+ + P EA G + + ++
Sbjct: 419 --IRVIAGPVEASTLGNIGIQLMTLDELNN 446
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 30.4 bits (69), Expect = 1.7
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 195 GSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQAAILSG 248
+I ++ GG + P + + G ++ L EA+ G+A+ + +G
Sbjct: 441 YNIDTMMASGGGTKNPIFVQEHANAT-GCAMLL-PEESEAMLLGSAMMGTVAAG 492
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 30.1 bits (67), Expect = 1.8
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 169 EELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLS 228
+ DL + + + L + + ++ VGG + I ++ G + +
Sbjct: 272 GPILEDLANRIIENIRLNLRG---EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIK 326
Query: 229 I-NPDEAVAYG 238
+ A A G
Sbjct: 327 PEDLQFANALG 337
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 29.5 bits (66), Expect = 1.9
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 357 IPLFQPKSFSHSRYQNAVTIQVFEGERAMTKDNNLLGTFNLTGIPPAPRGVPKIEVTFDL 416
+ F P+ + + + G+ +D + + P V + +T L
Sbjct: 81 VKHFSPEELKVKVLGDVIEV---HGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSL 137
Query: 417 DANGILNVSAKDSSTGKAER-ITIQ 440
++G+L V+ ER I I
Sbjct: 138 SSDGVLTVNGPRKQVSGPERTIPIT 162
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 29.8 bits (67), Expect = 2.3
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 152 PPLIFRDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPK 211
R EL R++L L +A + L+GG ++
Sbjct: 268 RERYSPGRIYDAIRPVLVEL-TQELRRSLEFFRIQLEEASPEV-----GYLLGGGSKLRG 321
Query: 212 IQKMLQDFFN 221
+ +L D
Sbjct: 322 LASLLTDTLG 331
Score = 27.9 bits (62), Expect = 9.2
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 67 ERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALN--DAK 124
E KRT +T + + + L + + + R + + + + R+L +
Sbjct: 242 EEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQ 301
Query: 125 LDKGSIHDVVLVGGSIRIPKIQKMLQ 150
L++ S L+GG ++ + +L
Sbjct: 302 LEEASPEVGYLLGGGSKLRGLASLLT 327
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 29.5 bits (66), Expect = 2.5
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 183 VERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQ 242
+R + K G +VV+VGG R I + + + + P A GAA+
Sbjct: 194 AKRVSSLVKR-IGVQRNVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALY 251
Query: 243 A 243
A
Sbjct: 252 A 252
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 29.4 bits (66), Expect = 3.8
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 441 NDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAED 491
+++ +L ++D +L AE + D + + L F V D
Sbjct: 742 DNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFL--KQFEVTDYKAD 790
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 29.1 bits (66), Expect = 4.4
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 22/96 (22%)
Query: 163 ITRARFE------ELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 216
+ RA E + + +R G R ++
Sbjct: 375 LWRALLEAVALAFRHHVAVLDDIGHAPQR--------------FFASDGGTRSRVWMGIM 420
Query: 217 QDFFNGKSLNLSINPDEAVAYGAAVQAAILSGDTSS 252
D + + L N A GAA AAI GD
Sbjct: 421 ADVL-QRPVQLLAN-PLGSAVGAAWVAAIGGGDDLG 454
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 28.7 bits (64), Expect = 4.8
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 183 VERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDEAVAYGAAVQ 242
R + A G + DVV+ GG + ++ L++ G + S A GAA+
Sbjct: 196 ASRVIGLANR-VGIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALY 253
Query: 243 A 243
A
Sbjct: 254 A 254
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB:
1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Length = 146
Score = 27.2 bits (60), Expect = 8.9
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAE 490
L L +A+ + R + ++E+ A+ +A E
Sbjct: 103 LDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANE-ALVKALE 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,985,238
Number of extensions: 493683
Number of successful extensions: 1572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1539
Number of HSP's successfully gapped: 79
Length of query: 535
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 437
Effective length of database: 3,965,535
Effective search space: 1732938795
Effective search space used: 1732938795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)