RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4003
(535 letters)
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 168 bits (426), Expect = 5e-50
Identities = 113/145 (77%), Positives = 127/145 (87%), Gaps = 1/145 (0%)
Query: 6 SVLAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTA 65
S+L I++G +F+VKSTAGDTHLGGEDFDNR+V F EFKRKHKKDI N RAVRRLRTA
Sbjct: 20 SILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTA 78
Query: 66 CERAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKL 125
CERAKRTLSSST+AS+EID+L+EGIDFY+ ITRARFEEL DLFR TL PVE+AL DAKL
Sbjct: 79 CERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKL 138
Query: 126 DKGSIHDVVLVGGSIRIPKIQKMLQ 150
DK IHD+VLVGGS RIPKIQK+LQ
Sbjct: 139 DKSQIHDIVLVGGSTRIPKIQKLLQ 163
Score = 131 bits (331), Expect = 2e-36
Identities = 75/91 (82%), Positives = 79/91 (86%)
Query: 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 216
DFY+ ITRARFEEL DLFR TL PVE+AL DAKLDK IHD+VLVGGS RIPKIQK+L
Sbjct: 103 IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLL 162
Query: 217 QDFFNGKSLNLSINPDEAVAYGAAVQAAILS 247
QDFFNGK LN SINPDEAVAYGAAVQAAILS
Sbjct: 163 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 193
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 166 bits (422), Expect = 2e-49
Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 6 SVLAIDE---GSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRL 62
S++ IDE F+V +T GDTHLGGEDFD+RL+ + +EFK+ D+ + A++RL
Sbjct: 18 SIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRL 77
Query: 63 RTACERAKRTLSSSTEASLEIDALHEGI----DFYSKITRARFEELCMDLFRQTLAPVER 118
+ A E+AK LSS+ + + + + K+TRA+ E L DL +++ ++
Sbjct: 78 KEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKV 137
Query: 119 ALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQ 150
AL DA L I DV+LVGG R+P +QK +
Sbjct: 138 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVA 169
Score = 122 bits (308), Expect = 5e-33
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 216
+ K+TRA+ E L DL +++ ++ AL DA L I DV+LVGG R+P +QK +
Sbjct: 109 KHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKV 168
Query: 217 QDFFNGKSLNLSINPDEAVAYGAAVQAAILS 247
+FF GK +NPDEAVA GAAVQ +L+
Sbjct: 169 AEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 198
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 160 bits (405), Expect = 2e-47
Identities = 93/144 (64%), Positives = 109/144 (75%), Gaps = 2/144 (1%)
Query: 337 LSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSR-YQNAVTIQVFEGERAMTKDNNLLGTF 395
L I G + T IP Q ++F+ Q V IQV+EGERAMTKDNNLLG F
Sbjct: 17 LGIETAGGVMTVLIK-RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 75
Query: 396 NLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKGRLSKDDIDRML 455
LTGIPPAPRGVP+IEVTFD+DANGILNVSA D STGK +ITI NDKGRLSK+DI+RM+
Sbjct: 76 ELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMV 135
Query: 456 AEAEKYKAEDDKQRERVAAKNKLE 479
EAEKYKAED+KQR++V++KN LE
Sbjct: 136 QEAEKYKAEDEKQRDKVSSKNSLE 159
Score = 67.7 bits (165), Expect = 5e-14
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 251 SSAIQDVLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
S +QD+LL+DV PLSLGIETAGGVMT +++RN+ IP KQ QTFT
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFT 45
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 110 bits (275), Expect = 2e-29
Identities = 53/109 (48%), Positives = 71/109 (65%), Gaps = 2/109 (1%)
Query: 337 LSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSR-YQNAVTIQVFEGERAMTKDNNLLGTF 395
L I +G + T + IP + FS + Q+AV+I V +GER DN LG F
Sbjct: 11 LGIETMGGVMTTLIAKN-TTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQF 69
Query: 396 NLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKG 444
NL GI PAPRG+P+IEVTFD+DA+GIL+VSAKD ++GK ++ITI+ G
Sbjct: 70 NLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
Score = 71.5 bits (175), Expect = 9e-16
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 257 VLLVDVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
VLL+DV PLSLGIET GGVMT ++ +N+ IP K Q F+
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFS 39
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 95.8 bits (238), Expect = 2e-24
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 337 LSIMYVGNITTWRTNSHFNPIPLFQPKSFSHSR-YQNAVTIQVFEGERAMTKDNNLLGTF 395
L + +G + IP+ + + F+ + Q A++I V +GER + +D L F
Sbjct: 8 LGLETMGGLVEKVIP-RNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARF 66
Query: 396 NLTGIPPAPRGVPKIEVTFDLDANGILNVSAKDSSTGKAERITIQNDKG 444
L GIP P G I VTF +DA+G+L+V+A + STG I ++ G
Sbjct: 67 ALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
Score = 62.7 bits (152), Expect = 1e-12
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 261 DVAPLSLGIETAGGVMTKIVERNSRIPCKQQQTFT 295
DV PLSLG+ET GG++ K++ RN+ IP + Q FT
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFT 36
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 86.7 bits (215), Expect = 2e-21
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVS 505
L++D+I +M+ +AE D K E V +N+ + + ++ E++G KL DKT++
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 506 QACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
A +A T L+G +K E +++ L Q
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQ 87
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 75.6 bits (186), Expect = 1e-17
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 474 AKNKLESYAFAVKQAAEDS--GSKLSDADKTSVSQACSATLTWLEGNSLAEKEEFEDRLK 531
+ LESYAF +K ED K++D DK + C+ ++WL+ N AEKEEFE + K
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 532 TLQQ 535
L++
Sbjct: 62 ELEK 65
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 73.8 bits (181), Expect = 1e-16
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQAAEDSGSKLSDADKTSVS 505
L+ +I M+ ++ Y +D K R K + ++ A + LS A++ +
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 506 QACSATLTWLEGNSLAEKEEFEDRLKTLQQ 535
A + +G+ + + E +K + +
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDK 87
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 69.2 bits (168), Expect = 3e-14
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGS---IHDVVLVGGSIRIPKIQ 213
+ E + + V L + S + L GG + +
Sbjct: 95 LPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLD 154
Query: 214 KMLQDFFNGKSLNLSINPDEAVAYGAAVQA 243
+LQ G S+ S P AVA GA +
Sbjct: 155 TLLQKET-GISVIRSEEPLTAVAKGAGMVL 183
Score = 53.0 bits (126), Expect = 1e-08
Identities = 17/142 (11%), Positives = 41/142 (28%), Gaps = 12/142 (8%)
Query: 21 TAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEAS 80
T + G++ D +V + + ++ + + + + E +
Sbjct: 31 TWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKE-----NDELETT 85
Query: 81 LEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGS---IHDVVLVG 137
+ L G+ + E + + V L + S + L G
Sbjct: 86 VSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTG 145
Query: 138 GSIRIPKIQKMLQ----IPPLI 155
G + + +LQ I +
Sbjct: 146 GGSLLRGLDTLLQKETGISVIR 167
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 61.4 bits (148), Expect = 8e-12
Identities = 18/152 (11%), Positives = 42/152 (27%), Gaps = 29/152 (19%)
Query: 8 LAIDEGSLFQVKSTAGDTHLGGEDFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACE 67
++ G L + GD+ LG + + + +
Sbjct: 21 ISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYL---------------- 64
Query: 68 RAKRTLSSSTEASLEIDALHEGIDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDK 127
A I + +I + + + L +E+ + + +
Sbjct: 65 -----------ADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEF 113
Query: 128 GSIHDVVLVGGSIRI--PKIQKMLQIPPLIFR 157
V+++GG + ++K QI F
Sbjct: 114 SGYTHVMVIGGGAELICDAVKKHTQIRDERFF 145
Score = 55.3 bits (132), Expect = 1e-09
Identities = 9/89 (10%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 157 RDFYSKITRARFEELCMDLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKML 216
+I + + + L +E+ + + + V+++GG + I +
Sbjct: 76 NYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAV 133
Query: 217 QDFFNGKSLNLSI--NPDEAVAYGAAVQA 243
+ + N + G +
Sbjct: 134 KKHTQIRDERFFKTNNSQYDLVNGMYLIG 162
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 31.9 bits (72), Expect = 0.16
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 428 DSSTGKAERITIQNDKG--RLSKDDIDRMLAEAEKYKAEDDKQRE 470
S E ++ D+ L+ ++I++ +AE EK K E++K+++
Sbjct: 199 QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 31.0 bits (69), Expect = 0.30
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 174 DLFRQTLAPVERALNDAKLDKGSIHDVVLVGGSIRIPKIQKMLQDFFNGKSLNLSINPDE 233
D+ V + G + DVV+ GG + ++ L++ G + S
Sbjct: 185 DIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQY 243
Query: 234 AVAYGAAVQAA 244
A GAA+ A
Sbjct: 244 NGALGAALYAY 254
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 150
Score = 27.5 bits (60), Expect = 2.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477
SK+DI+ +LA AE+ + E ++ + AK K
Sbjct: 13 FSKEDIETVLATAERLERELKEKGQLEYAKGK 44
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia
coli [TaxId: 562]}
Length = 150
Score = 27.1 bits (59), Expect = 3.2
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477
+ +++ +L A K KA+ +E K
Sbjct: 14 FTPAELNSLLQLAAKLKADKKSGKEEAKLTGK 45
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Length = 75
Score = 25.5 bits (56), Expect = 3.9
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 31 DFDNRLVTFFADEFKRKHKKDILANTRAVRRLRTACERAKRTLSSSTEASLEIDALHEGI 90
+FD F ++ R K + RL A ++ S A I L E +
Sbjct: 7 EFDEDAWQFLIADYLRPEKPAF---RKCYERLELAAREHGWSIPSRATAFRRIQQLDEAM 63
Query: 91 DFYSKITRAR 100
+ R
Sbjct: 64 -----VVACR 68
>d2ia1a1 d.359.1.1 (A:1-166) Uncharacterized protein BH3703
{Bacillus halodurans [TaxId: 86665]}
Length = 166
Score = 27.0 bits (60), Expect = 4.6
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 6/58 (10%)
Query: 413 TFDLDANGILNVS--AKDSSTGKAERITIQNDK--GRLSKDDIDRMLAEAEKYKAEDD 466
A+G N+ + + G + +D + +Y E
Sbjct: 100 QMTFYASGKFNIDFYYDKNPFDTFLTRLAWQYEHFGTIPEDSFYK--ETLNEYLEEKA 155
>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 150
Score = 26.7 bits (58), Expect = 4.9
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKNK 477
S ++ +L + K E+ K K
Sbjct: 15 HSTRELRYLLDLSRDLKRAKYTGTEQQHLKRK 46
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
2285]}
Length = 146
Score = 26.3 bits (57), Expect = 5.6
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQRERVAAKN 476
S+D+++ + A +KY + R+ ++ K
Sbjct: 10 FSRDELEDIFALTDKYSKNLNDTRKILSGKT 40
>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 193
Score = 26.9 bits (59), Expect = 5.9
Identities = 12/69 (17%), Positives = 24/69 (34%)
Query: 429 SSTGKAERITIQNDKGRLSKDDIDRMLAEAEKYKAEDDKQRERVAAKNKLESYAFAVKQA 488
+K ++ D + M +EA + E+ K + +K L V
Sbjct: 83 EREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNP 142
Query: 489 AEDSGSKLS 497
+ SK++
Sbjct: 143 LDMKASKIA 151
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 27.2 bits (59), Expect = 5.9
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 81 LEIDALHEGIDFYSKITRARFEELCMDLFRQTLAP 115
+ L + + T ARFE +D R L P
Sbjct: 258 VNTGDLETSAERFQADTLARFENRGVDPMRPLLPP 292
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 26.3 bits (57), Expect = 6.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 446 LSKDDIDRMLAEAEKYKAEDDKQ 468
LS+DD++ +LA A K KA +
Sbjct: 15 LSRDDLNLVLATAAKLKANPQPE 37
>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
[TaxId: 10891]}
Length = 666
Score = 27.2 bits (60), Expect = 6.5
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 220 FNGKSLNL-SINPDEAVAYGAAVQAAI--LSGDTSSAIQDVLLVDVAPLSLGIETAGGVM 276
GKS S +P+ Q+ I +S I +V+ L +++
Sbjct: 373 LGGKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLY-AEDSSFTAQ 431
Query: 277 TKIVERNSRIPCKQQQTFTEQPSKLPSSVETPVLPSKMS----CWPDAIGGQLRFTP 329
+ I + + +Q P + T + + ++ PD L +P
Sbjct: 432 SIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSP 488
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,886,374
Number of extensions: 88617
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 32
Length of query: 535
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,171,896
Effective search space: 521493720
Effective search space used: 521493720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)