BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4004
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/291 (74%), Positives = 236/291 (81%), Gaps = 36/291 (12%)
Query: 28 KSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 87
K TFTAWCNSHLRKAGT IENIEEDFR+GLKLMLLLEVISGE L KP+RGKMR HKI
Sbjct: 7 KQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKI 66
Query: 88 ANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 147
+NVNKALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTIILRFAIQDISVEE +AKEGL
Sbjct: 67 SNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGL 126
Query: 148 LLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFD 207
LLW QRKTAPYKNVN+QNFH+S+KDGL FCALIHRHRPELIDY KL KD+PL NLNTAFD
Sbjct: 127 LLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFD 186
Query: 208 VAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMPD 267
VAEKYLDIP+MLD ED++ T +PDE+AIMTYVS +YHAF
Sbjct: 187 VAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAF--------------------- 225
Query: 268 ERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD 318
SGAQKAETAANRICKVL VNQENE+LME+YE+LASD
Sbjct: 226 ---------------SGAQKAETAANRICKVLAVNQENEQLMEDYEKLASD 261
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/232 (84%), Positives = 211/232 (90%)
Query: 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRG 80
L K TFTAWCNSHLRKAGT IENIEEDFRNGLKLMLLLEVISGE LP+PD+G
Sbjct: 15 LLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKG 74
Query: 81 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 140
KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE
Sbjct: 75 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 134
Query: 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQ 200
+AKEGLLLWCQRKTAPY+NVNVQNFH S+KDGLA CALIHRHRP+LIDY KL KD+P+
Sbjct: 135 TSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIG 194
Query: 201 NLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
NLNTAF+VAEKYLDIP+MLD ED++NTPKPDE+AIMTYVSC+YHAF GA+Q
Sbjct: 195 NLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQA 246
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/231 (84%), Positives = 211/231 (91%)
Query: 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRG 80
L K TFTAWCNSHLRKAGT IENIEEDFRNGLKLMLLLEVISGE LP+PD+G
Sbjct: 19 LLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKG 78
Query: 81 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 140
KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE
Sbjct: 79 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE 138
Query: 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQ 200
+AKEGLLLWCQRKTAPY+NVNVQNFH S+KDGLA CALIHRHRP+LIDY KL KD+P+
Sbjct: 139 TSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIG 198
Query: 201 NLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQ 251
NLNTAF+VAEKYLDIP+MLD ED++NTPKPDE+AIMTYVSC+YHAF GA+Q
Sbjct: 199 NLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQ 249
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/219 (86%), Positives = 205/219 (93%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92
TFTAWCNSHLRKAGT IENIEEDFR+GLKLMLLLEVISGE L KP+RGKMR HKI+NVNK
Sbjct: 11 TFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNK 70
Query: 93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQ 152
ALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTIILRFAIQDISVEE +AKEGLLLWCQ
Sbjct: 71 ALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQ 130
Query: 153 RKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKY 212
RKTAPYKNVN+QNFH+S+KDGL FCALIHRHRPELIDY KL KD+PL NLNTAFDVAEKY
Sbjct: 131 RKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKY 190
Query: 213 LDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQ 251
LDIP+MLD ED++ T +PDE+AIMTYVS +YHAF GAQ+
Sbjct: 191 LDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQE 229
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/217 (85%), Positives = 201/217 (92%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92
TFTAWCNSHLRKAGT IENI+EDFR+GLKLMLLLEVISGE LPKP+RGKMR HKI NVNK
Sbjct: 16 TFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNK 75
Query: 93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQ 152
ALDFIASKGVKLVSIGAEEIVDGN KMTLGMIWTIILRFAIQDISVEE +AKEGLLLWCQ
Sbjct: 76 ALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQ 135
Query: 153 RKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKY 212
RKTAPYKNVNVQNFH+S+KDGLAF ALIHRHRPELI+Y KL KD+P+ NLN AF+VAEKY
Sbjct: 136 RKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPVTNLNNAFEVAEKY 195
Query: 213 LDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGA 249
LDIP+MLD ED++NT +PDE AIMTYVS +YHAF GA
Sbjct: 196 LDIPKMLDAEDIVNTARPDEEAIMTYVSSFYHAFSGA 232
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 154/218 (70%), Gaps = 6/218 (2%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92
TFT W N HL KA I ++ ED R+G L+ LLEV+SG++LP+ ++G+MRFHK+ NV
Sbjct: 77 TFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQI 135
Query: 93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV----EEMTAKEGLL 148
ALD++ + VKLV+I ++I DGN K+TLG+IWTIIL F I DI V E+MTAKE LL
Sbjct: 136 ALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLL 195
Query: 149 LWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDV 208
LW QR Y+ + NF S++DG F A+IHRH+P LID +K+ + L+NL+ AF V
Sbjct: 196 LWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSV 255
Query: 209 AEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
AE+ L + R+LDPED ++ P+PDE++I+TYVS Y A
Sbjct: 256 AERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAM 292
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/231 (50%), Positives = 158/231 (68%), Gaps = 14/231 (6%)
Query: 33 TFTAWCNSHLRKAGTA-----IENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 87
TFT W N HL K A I ++ ED R+G L+ LLEV+SG++LP+ ++G+MRFHK+
Sbjct: 16 TFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKL 74
Query: 88 ANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV----EEMTA 143
NV ALD++ + VKLV+I ++I DGN K+TLG+IWTIIL F I DI V E+MTA
Sbjct: 75 QNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTA 134
Query: 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLN 203
KE LLLW QR Y+ + NF S++DG F A+IHRH+P LID +K+ + L+NL+
Sbjct: 135 KEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLD 194
Query: 204 TAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF---QGAQQ 251
AF VAE+ L + R+LDPED ++ P+PDE++I+TYVS Y A GAQ+
Sbjct: 195 QAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAMPRVPGAQE 244
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 154/223 (69%), Gaps = 11/223 (4%)
Query: 33 TFTAWCNSHLRKAGTA-----IENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 87
TFT W N HL K A I ++ ED R+G L+ LLEV+SG++LP+ ++G+MRFHK+
Sbjct: 19 TFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKL 77
Query: 88 ANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV----EEMTA 143
NV ALD++ + VKLV+I ++I DGN K+TLG+IWTIIL F I DI V E+MTA
Sbjct: 78 QNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTA 137
Query: 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLN 203
KE LLLW QR Y+ + NF S++DG F A+IHRH+P LID +K+ + L+NL+
Sbjct: 138 KEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLD 197
Query: 204 TAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
AF VAE+ L + R+LDPED ++ P+PDE++I+TYVS Y A
Sbjct: 198 QAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAM 239
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|M Chain M, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|L Chain L, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|O Chain O, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|N Chain N, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|Q Chain Q, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|P Chain P, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|S Chain S, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|R Chain R, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|T Chain T, Model Of Alpha-Actinin Ch1 Bound To F-Actin
Length = 109
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/101 (96%), Positives = 99/101 (98%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92
TFTAWCNSHLRKAGT IENIEEDFRNGLKLMLLLEVISGE LP+PD+GKMRFHKIANVNK
Sbjct: 9 TFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNK 68
Query: 93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 133
ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI
Sbjct: 69 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 109
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 141/221 (63%), Gaps = 9/221 (4%)
Query: 33 TFTAWCNSHLRKAGTA-IENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN 91
TFT W N+ K+G I + D ++G KL+ LLE ++G +LPK +RG R H + NVN
Sbjct: 6 TFTKWINARFSKSGKPPINDXFTDLKDGRKLLDLLEGLTGTSLPK-ERGSTRVHALNNVN 64
Query: 92 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI------SVEEMTAKE 145
+ L + V+LV+IG +IVDGN K+TLG++W+IIL + ++D+ +++ +++
Sbjct: 65 RVLQVLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDVXKDVXSDLQQTNSEK 124
Query: 146 GLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTA 205
LL W ++ T PY VNV NF S+ DGLAF A++HRH+P+L + K+ K +P++ L A
Sbjct: 125 ILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKXSPIERLEHA 184
Query: 206 FDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
F A+ YL I ++LDPED + PD+++I+ Y++ +
Sbjct: 185 FSKAQTYLGIEKLLDPED-VAVRLPDKKSIIXYLTSLFEVL 224
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 145/228 (63%), Gaps = 12/228 (5%)
Query: 33 TFTAWCNSHLRKAGTA-IENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN 91
TFT W N+ K G IEN+ D ++G +L+ LLE ++G+ LPK ++G R H + NVN
Sbjct: 20 TFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVN 78
Query: 92 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI------SVEEMTAKE 145
KAL + + V LV+IG+ +IVDGN K+TLG+IW IIL + ++++ +++ +++
Sbjct: 79 KALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIMAGLQQTNSEK 138
Query: 146 GLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHK-LSKDNPLQNLNT 204
LL W ++ T Y VNV NF S+ DGLA ALIH HRP+L D++ +S+ + Q L
Sbjct: 139 ILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEH 198
Query: 205 AFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
AF++A L I ++LDPED ++T PD+++I+ Y++ + QQV
Sbjct: 199 AFNIARYQLGIEKLLDPED-VDTTYPDKKSILMYITSLFQVL--PQQV 243
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 21 TFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENV 80
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DISVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG++WT+IL ++I D ++ T
Sbjct: 81 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQT 140
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K PY + + NF+ +++DG A AL+ P L D+ P+ N
Sbjct: 141 PKQRLLGWIQNKI-PY--LPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDN 197
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L +P+++ PE++I+ P DE ++MTY+S + A
Sbjct: 198 AREAMQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 240
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 24 TFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENV 83
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DISVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG++WT+IL ++I D ++ T
Sbjct: 84 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQT 143
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K PY + + NF+ +++DG A AL+ P L D+ P+ N
Sbjct: 144 PKQRLLGWIQNKI-PY--LPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDN 200
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L +P+++ PE++I+ P DE ++MTY+S + A
Sbjct: 201 AREAMQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 243
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 24 TFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENV 83
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DISVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG++WT+IL ++I D ++ T
Sbjct: 84 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQT 143
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K PY + + NF+ +++DG A AL+ P L D+ P+ N
Sbjct: 144 PKQRLLGWIQNKI-PY--LPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDN 200
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L +P+++ PE++I+ P DE ++MTY+S + A
Sbjct: 201 AREAVQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 243
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 51 TFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENV 110
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DISVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG+IWT+IL ++I D ++ T
Sbjct: 111 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAKKQT 170
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K + + NF ++ G A AL+ P L D+ P+ N
Sbjct: 171 PKQRLLGWIQNK---LPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTN 227
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L IP+++ PE++++ P DE ++MTY+S + A
Sbjct: 228 AREAMQQADDWLGIPQVITPEEIVD-PNVDEHSVMTYLSQFPKA 270
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + R R ++ NV
Sbjct: 31 TFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRXYRKYHQRPTFRQXQLENV 90
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DISVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG++WT+IL ++I D ++ T
Sbjct: 91 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISXPVWEDEGDDDAKKQT 150
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K PY + + NF+ +++DG A AL+ P L D+ P+ N
Sbjct: 151 PKQRLLGWIQNKI-PY--LPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDN 207
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L +P+++ PE++I+ P DE ++ TY+S + A
Sbjct: 208 AREAXQQADDWLGVPQVITPEEIIH-PDVDEHSVXTYLSQFPKA 250
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 48 TFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENV 107
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DISVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG+IWT+IL ++I D ++ T
Sbjct: 108 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAKKQT 167
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K + + NF ++ G A AL+ P L D+ P+ N
Sbjct: 168 PKQRLLGWIQNK---LPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTN 224
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L IP+++ PE++++ P DE ++MTY+S + A
Sbjct: 225 AREAMQQADDWLGIPQVITPEEIVD-PNVDEHSVMTYLSQFPKA 267
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 24 TFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENV 83
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DISVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG++WT+IL ++I D ++ T
Sbjct: 84 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQT 143
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL Q K PY + + NF+ +++DG A AL+ P L D+ P+ N
Sbjct: 144 PKQRLLGRIQNKI-PY--LPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDN 200
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L +P+++ PE++I+ P DE ++MTY+S + A
Sbjct: 201 AREAMQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 243
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 15/224 (6%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANV 90
TFT WCN HL+ I N++ D +GL+L+ LLEV+S + + + R R ++ NV
Sbjct: 51 TFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENV 110
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DISVEEMT 142
+ AL+F+ + +KLVSI ++ IVDGNLK+ LG+IWT+IL ++I D ++ T
Sbjct: 111 SVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAKKQT 170
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI-DYHKLSKDNPLQN 201
K+ LL W Q K + + NF ++ G A AL+ P L D+ P+ N
Sbjct: 171 PKQRLLGWIQNK---LPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTN 227
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245
A A+ +L IP+++ PE++++ P D+ ++MTY+S + A
Sbjct: 228 AREAMQQADDWLGIPQVITPEEIVD-PNVDKHSVMTYLSQFPKA 270
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At
1.1 Angstrom Resolution
Length = 109
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQN 201
+AK+ LLLWCQ KTA Y NVN+ NF S++DG+AF ALIH+HRP+LID+ KL K N N
Sbjct: 3 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 62
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
L AF++AE++L + ++LDPED I+ PDE++I+TYV YYH F
Sbjct: 63 LQNAFNLAEQHLGLTKLLDPED-ISVDHPDEKSIITYVVTYYHYF 106
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQN 201
+AK+ LLLWCQ KTA Y NVN+ NF S++DG+AF ALIH+HRP+LID+ KL K N N
Sbjct: 2 SAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYN 61
Query: 202 LNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246
L AF++AE++L + ++LDPED I+ PDE++I+TYV YYH F
Sbjct: 62 LQNAFNLAEQHLGLTKLLDPED-ISVDHPDEKSIITYVVTYYHYF 105
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNL 202
AK+ LLLWCQ KTA Y NVNV NF S++DGLAF A++H+HRP+L+D+ L K N NL
Sbjct: 8 AKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNL 67
Query: 203 NTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
AF++AEK L + ++LDPED +N +PDE++I+TYV+ YYH F
Sbjct: 68 QNAFNLAEKELGLTKLLDPED-VNVDQPDEKSIITYVATYYHYFS 111
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLN 203
K+ LL WC+ KT Y++V++QNF S+ DG+AFCAL+H PE DY +LS N QN
Sbjct: 9 KQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFE 68
Query: 204 TAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYY 243
AF AE + D P++LD ED++ +PD + + TY+ +Y
Sbjct: 69 VAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFY 108
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 68/101 (67%)
Query: 147 LLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAF 206
LL WCQR+T Y VNV + +S+K GLA CA+IHR+RP+LID+ L + N +N AF
Sbjct: 14 LLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAF 73
Query: 207 DVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
D+AEK L I ++ +++ + +PD+ +++ Y++ +Y F+
Sbjct: 74 DIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 114
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 71/103 (68%)
Query: 147 LLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAF 206
LL WCQ++T Y++VNV + S++ GLA CA+IHR RPELI++ L++D+ ++N AF
Sbjct: 14 LLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINFDSLNEDDAVENNQLAF 73
Query: 207 DVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGA 249
DVAE+ IP + +++ + +PD+ +++ Y+S +Y F+G
Sbjct: 74 DVAEREFGIPPVTTGKEMASAQEPDKLSMVMYLSKFYELFRGT 116
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 138 VEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDN 197
+++ +++ LL W ++ T PY VNV NF S+ DGLAF A++HRH+P+L + K+ K +
Sbjct: 4 LQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMS 63
Query: 198 PLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQV 252
P++ L AF A+ YL I ++LDPED + PD+++I+ Y++ + QQV
Sbjct: 64 PIERLEHAFSKAQTYLGIEKLLDPED-VAVRLPDKKSIIMYLTSLFEVL--PQQV 115
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From
Smoothelin-Like 1
pdb|2K3S|A Chain A, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
Length = 119
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQ 200
+ +K LL WC+ T Y++V++QNF S+ G+AFCALIH+ PE DY +L
Sbjct: 3 LGSKNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPEAFDYAELDPAKRRH 62
Query: 201 NLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQ 258
N AF AEK D ++L+ +D++ PD + + TY+ Q+++ S VQ
Sbjct: 63 NFTLAFSTAEKLADCAQLLEVDDMVRLAVPDSKCVYTYI----------QELYRSLVQ 110
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNL 202
A + LL+WC+ T Y+ V + NF S+++GL+FCA++H RP+LIDY L+ + +N
Sbjct: 10 ASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENN 69
Query: 203 NTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYV 239
A+D + I R+L+P D++ PD+ +MTY+
Sbjct: 70 KKAYD-GFASIGISRLLEPSDMVLLAIPDKLTVMTYL 105
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human
Mical-1
Length = 118
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLN 203
+E LL WCQ +TA Y V+V + S+ DGLA CAL++R +P L++ +L L+
Sbjct: 15 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATA 74
Query: 204 TAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
A VAE L I ++ + ++ P ++ Y+S ++ AF+
Sbjct: 75 WALKVAENELGITPVVSAQAVVAGSDP--LGLIAYLSHFHSAFK 116
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 116
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLN 203
+E LL WCQ +TA Y V+V + S+ DGLA CAL++R +P L++ +L L+
Sbjct: 9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATA 68
Query: 204 TAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
A VAE L I ++ + ++ P ++ Y+S ++ AF+
Sbjct: 69 WALKVAENELGITPVVSAQAVVAGSDP--LGLIAYLSHFHSAFK 110
>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex
Length = 231
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 20/227 (8%)
Query: 34 FTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETL-----PKPDRGKMRFHKIA 88
+ W NS + + N+ ED RNG L+ +L+ +S ++ KP KM F K+
Sbjct: 11 YRLWINSL--GIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPI-KMPFRKVE 67
Query: 89 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI--SVEEMTAKEG 146
N N+ + LV++ +IV GN K+ LG++W ++RF + + S+
Sbjct: 68 NCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQ-LMRFHMLQLLKSLRSEMTDAD 126
Query: 147 LLLWCQRKTAPY-KNVNVQNFH-LSFKDGLAFCALIHRHRPELIDYHKLSK----DNPLQ 200
+L W RK + + +++F S GL F L+ P +++++ ++K D
Sbjct: 127 ILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRL 186
Query: 201 NLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
N VA K L L PED++ + + ++ S Y + Q
Sbjct: 187 NATYIVSVARK-LGCSVFLLPEDIVEVNQ--KMILILTASIMYWSLQ 230
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 34 FTAWCNSHLRKAG--TAIENIEEDFRNGLKLMLLLEVISGETLPKPDR-GKMRFHKIANV 90
+T W N +L K+G I ++++D +G+ L +++V++ E + + K R I N+
Sbjct: 23 YTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENI 82
Query: 91 NKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTI 127
+ L+F+A+KG+ + + AEEI +GNLK LG+ +++
Sbjct: 83 DACLNFLAAKGINIQGLSAEEIRNGNLKAILGLFFSL 119
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 23/231 (9%)
Query: 34 FTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETL-----PKPDRGKMRFHKIA 88
+ W NS + + N+ ED RNG L+ +L+ +S ++ KP KM F K+
Sbjct: 281 YRLWINS--LGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPI-KMPFRKVE 337
Query: 89 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV-------EEM 141
N N+ + LV++ +IV GN K+ LG++W ++ +Q + +EM
Sbjct: 338 NCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEM 397
Query: 142 TAKEGLLLWCQRKTAPY-KNVNVQNFH-LSFKDGLAFCALIHRHRPELIDYHKLSKD--N 197
T + +L W RK + + +++F S GL F L+ P +++++ ++K +
Sbjct: 398 TDAD-ILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETD 456
Query: 198 PLQNLNTAFDVA-EKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247
+ LN + V+ + L L PED++ + + ++ S Y + Q
Sbjct: 457 DEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQ--KMILILTASIMYWSLQ 505
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 101 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS----------------VEEM--- 141
G +V+IG +++ +G + LG+I +I + D++ VEE+
Sbjct: 92 GCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRL 151
Query: 142 TAKEGLLLWC--QRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPL 199
++ LL W K YK V NF KD A+ L++ PE D L +PL
Sbjct: 152 PPEKVLLKWMNFHLKKGGYKKT-VSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPL 210
Query: 200 QNLNTAFDVAEKYLDIPRMLDPEDLI 225
+ AE+ ++ R L E+++
Sbjct: 211 ERAELVLSHAER-MNCKRYLTAEEIV 235
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 21/211 (9%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETL--------PKPDRGKMRF 84
FT W NS +I + + R+GL L+ + I+ T+ P MRF
Sbjct: 289 VFTLWLNS--LDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRF 346
Query: 85 HKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII---LRFAIQDISVEEM 141
+ N N A+D ++G LV I +I DG+ +TL ++W ++ + + +S
Sbjct: 347 KAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSLSRGGK 406
Query: 142 TAKEG-LLLWCQRKTAP-YKNVNVQNFH-LSFKDGLAFCALIHRHRPELIDYHKLSKDN- 197
T + ++ W A K +++F S G+ ++H + E +DY+ ++ +
Sbjct: 407 TLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGST 466
Query: 198 ---PLQNLNTAFDVAEKYLDIPRMLDPEDLI 225
+QN A +A K + +L PED++
Sbjct: 467 EELAIQNARLAISIARKLGAVIFIL-PEDIV 496
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 24/154 (15%)
Query: 98 ASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV----------EE------- 140
A G+ + +IGA +I++G + LG++W II R + I + EE
Sbjct: 98 AMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQF 157
Query: 141 --MTAKEGLLLWCQR--KTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD 196
+ ++ LL W K A + V NF DG + L+++ PEL L
Sbjct: 158 LRLPPEKILLRWFNYHLKAANWPRT-VSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTT 216
Query: 197 NPLQNLNTAFDVAEKYLDIPRMLDPEDLI-NTPK 229
+ LQ AEK LD + L P ++ PK
Sbjct: 217 DVLQRAEQVLQNAEK-LDCRKYLTPTAMVAGNPK 249
>pdb|2K2R|A Chain A, The Nmr Structure Of Alpha-Parvin Ch2PAXILLIN LD1 COMPLEX
Length = 129
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP------KPDRGKMRFHK 86
T + N HL K + +E F +G+ L+LL+ ++ G +P PD + K
Sbjct: 24 TLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFE---QK 80
Query: 87 IANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 131
+ NV+ A + + G++ E+IV+ +LK TL +++ + ++
Sbjct: 81 VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKY 125
>pdb|2VZC|A Chain A, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin
pdb|2VZC|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin
pdb|2VZD|A Chain A, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin In Complex With Paxillin Ld1
Motif
pdb|2VZD|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha Parvin In Complex With Paxillin Ld1
Motif
pdb|2VZG|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha-Parvin In Complex With Paxillin Ld2
Motif
pdb|2VZI|B Chain B, Crystal Structure Of The C-Terminal Calponin Homology
Domain Of Alpha-Parvin In Complex With Paxillin Ld4
Motif
Length = 131
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP------KPDRGKMRFHK 86
T + N HL K + +E F +G+ L+LL+ ++ G +P PD + K
Sbjct: 26 TLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFE---QK 82
Query: 87 IANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 131
+ NV+ A + + G++ E+IV+ +LK TL +++ + ++
Sbjct: 83 VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKY 127
>pdb|3KMW|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 129
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP------KPDRGKMRFHK 86
T + N HL K + +E F +G+ L+LL+ ++ G +P PD + K
Sbjct: 24 TLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFE---QK 80
Query: 87 IANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 131
+ NV+ A + + G++ E+IV+ +LK TL +++ + ++
Sbjct: 81 VLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKY 125
>pdb|4EDL|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDL|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDM|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain
pdb|4EDN|A Chain A, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|B Chain B, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|C Chain C, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|D Chain D, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|E Chain E, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|F Chain F, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|G Chain G, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|H Chain H, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|I Chain I, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
pdb|4EDN|J Chain J, Crystal Structure Of Beta-Parvin Ch2 Domain In Complex
With Paxillin Ld1 Motif
Length = 133
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 27 AKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP------KPDRG 80
K L+TF N HL K + +E F +G+ L+LL+ ++ +P P+
Sbjct: 25 VKKSLITF---VNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYFVPLHHFYLTPESF 81
Query: 81 KMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 131
+ H NV+ A + + G+K E++V+ +LK TL +++ + ++
Sbjct: 82 DQKVH---NVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTKY 129
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 19/117 (16%)
Query: 89 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDI------------ 136
N+N AL+ ++ G +V+IGAE++ G + LG++W II DI
Sbjct: 96 NLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALL 155
Query: 137 ----SVEE---MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPE 186
++EE ++ +E LL W + NF KD A+ L+++ P+
Sbjct: 156 RDGETLEELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPK 212
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 18/18 (100%)
Query: 301 VNQENERLMEEYERLASD 318
VNQENERLMEEYERLAS+
Sbjct: 5 VNQENERLMEEYERLASE 22
>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2
From Schizosaccharomyces Pombe
Length = 159
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 37 WCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVNKALD 95
W L E+ RNG+ L LL++ + L K +++F N+NK LD
Sbjct: 19 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLD 78
Query: 96 FIASKGV-KLVSIGAEEIVDG-NLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 147
FI G+ ++ +I +G NL + I + ++QD++ + + E L
Sbjct: 79 FIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENL 132
>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of
An Iqgap Protein From Schizosaccharomyces Pombe
Length = 203
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 37 WCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVNKALD 95
W L E+ RNG+ L LL++ + L K +++F N+NK LD
Sbjct: 63 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLD 122
Query: 96 FIASKGVKLVSIGAEEIVD----GNLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 147
FI G+ L I E+ D NL + I + ++QD++ + + E L
Sbjct: 123 FI--HGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENL 176
>pdb|3KMU|B Chain B, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 129
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 33 TFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP------KPDRGKMRFHK 86
T + N HL K + +E F +G+ L+LL ++ G +P PD + K
Sbjct: 24 TLITFVNKHLNKLNLEVTELETQFADGVYLVLLXGLLEGYFVPLHSFFLTPDSFE---QK 80
Query: 87 IANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRF 131
+ NV+ A + G++ E+IV+ +LK TL +++ + ++
Sbjct: 81 VLNVSFAFELXQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKY 125
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 69 ISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEI----------VDGNLK 118
ISG L + D + F KI ++ + ++ I+ K + + +G I +D NL
Sbjct: 31 ISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLA 90
Query: 119 MTLGMIWTIILRFAIQD 135
+GM+ TII A+++
Sbjct: 91 DNMGMMATIINGLALEN 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,033,642
Number of Sequences: 62578
Number of extensions: 360280
Number of successful extensions: 873
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 64
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)