Query psy4004
Match_columns 319
No_of_seqs 233 out of 1464
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:56:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 100.0 2.8E-80 6.1E-85 642.6 22.1 268 13-318 33-306 (2473)
2 KOG0035|consensus 100.0 8.9E-53 1.9E-57 426.0 6.2 276 6-318 5-283 (890)
3 COG5069 SAC6 Ca2+-binding acti 100.0 8.4E-48 1.8E-52 363.0 7.5 258 23-316 3-266 (612)
4 KOG0046|consensus 100.0 1.1E-30 2.4E-35 249.7 13.6 219 22-246 381-615 (627)
5 KOG0046|consensus 100.0 5.8E-30 1.3E-34 244.7 14.8 277 25-317 115-428 (627)
6 cd00014 CH Calponin homology d 99.8 2.3E-18 5E-23 136.6 9.1 103 30-132 2-107 (107)
7 PF00307 CH: Calponin homology 99.7 6.9E-18 1.5E-22 134.0 9.2 102 144-247 1-108 (108)
8 smart00033 CH Calponin homolog 99.7 7.9E-18 1.7E-22 132.4 8.7 98 31-129 2-102 (103)
9 cd00014 CH Calponin homology d 99.7 4.1E-17 8.8E-22 129.4 5.7 102 143-247 2-107 (107)
10 KOG3631|consensus 99.7 1E-15 2.2E-20 136.7 13.1 211 32-247 93-363 (365)
11 PF00307 CH: Calponin homology 99.6 5.9E-16 1.3E-20 122.8 8.3 101 31-132 1-108 (108)
12 smart00033 CH Calponin homolog 99.6 9E-16 2E-20 120.6 3.7 97 144-241 2-102 (103)
13 KOG3631|consensus 99.3 1.2E-11 2.6E-16 110.8 9.9 111 22-132 250-363 (365)
14 COG5069 SAC6 Ca2+-binding acti 99.3 2.6E-11 5.6E-16 116.2 10.8 212 26-243 376-610 (612)
15 PF11971 CAMSAP_CH: CAMSAP CH 99.3 2E-12 4.3E-17 98.6 2.4 76 150-226 1-83 (85)
16 KOG0518|consensus 99.0 4.3E-13 9.4E-18 138.0 -13.2 215 23-241 20-246 (1113)
17 KOG2046|consensus 98.8 1.6E-08 3.5E-13 87.4 9.1 109 8-116 4-113 (193)
18 KOG0035|consensus 98.5 2.2E-07 4.8E-12 96.3 5.9 211 31-248 144-522 (890)
19 KOG0517|consensus 98.2 2.6E-06 5.7E-11 92.6 7.1 156 141-304 47-289 (2473)
20 KOG0516|consensus 98.1 6.5E-07 1.4E-11 97.3 1.0 110 27-137 72-187 (1047)
21 PF11971 CAMSAP_CH: CAMSAP CH 98.0 6E-06 1.3E-10 63.0 3.3 78 37-114 1-83 (85)
22 COG5199 SCP1 Calponin [Cytoske 97.9 4.8E-05 1.1E-09 63.0 6.8 102 28-130 12-115 (178)
23 PF06294 DUF1042: Domain of Un 97.5 4.2E-05 9.1E-10 65.3 1.4 95 147-247 1-100 (158)
24 PF06294 DUF1042: Domain of Un 97.3 0.0007 1.5E-08 57.8 6.3 97 35-133 2-101 (158)
25 KOG0532|consensus 95.4 0.012 2.7E-07 59.1 3.1 69 50-118 595-670 (722)
26 KOG2046|consensus 95.1 0.085 1.8E-06 46.1 7.1 100 142-246 25-129 (193)
27 KOG2996|consensus 94.6 0.038 8.3E-07 55.4 4.1 70 46-115 27-102 (865)
28 KOG2996|consensus 92.7 0.096 2.1E-06 52.6 3.2 83 160-244 27-117 (865)
29 KOG2128|consensus 92.3 0.29 6.4E-06 53.7 6.5 94 34-129 47-144 (1401)
30 PF05622 HOOK: HOOK protein; 87.8 0.66 1.4E-05 48.9 4.6 101 31-135 9-125 (713)
31 KOG0532|consensus 87.6 0.28 6E-06 49.7 1.5 62 164-226 595-666 (722)
32 COG5261 IQG1 Protein involved 87.4 1.1 2.4E-05 47.2 5.6 93 23-116 31-132 (1054)
33 KOG3000|consensus 81.7 4 8.7E-05 38.3 6.2 97 143-245 16-117 (295)
34 COG5199 SCP1 Calponin [Cytoske 81.5 3 6.5E-05 35.0 4.7 99 143-245 14-115 (178)
35 KOG0165|consensus 44.8 26 0.00055 37.1 3.9 57 80-136 338-400 (1023)
36 PF05622 HOOK: HOOK protein; 42.0 14 0.00029 39.1 1.5 94 142-241 7-117 (713)
37 PF06395 CDC24: CDC24 Calponin 41.9 28 0.00061 26.7 2.8 61 165-225 5-71 (89)
38 cd08540 SAM_PNT-ERG Sterile al 37.4 29 0.00062 25.7 2.2 35 144-180 10-46 (75)
39 COG5261 IQG1 Protein involved 32.6 42 0.00091 36.0 3.2 75 148-226 50-130 (1054)
40 cd08541 SAM_PNT-FLI-1 Sterile 32.5 38 0.00082 26.1 2.2 34 144-179 22-57 (91)
41 KOG0165|consensus 30.1 6.8 0.00015 41.1 -2.8 81 52-133 352-435 (1023)
42 KOG2128|consensus 29.5 82 0.0018 35.6 4.9 78 146-226 46-129 (1401)
43 cd08537 SAM_PNT-ESE-1-like Ste 27.6 50 0.0011 24.7 2.1 34 143-179 14-51 (78)
44 COG3622 Hfi Hydroxypyruvate is 26.0 1.6E+02 0.0034 27.0 5.4 63 49-111 76-149 (260)
45 KOG3000|consensus 25.4 1.8E+02 0.004 27.3 5.9 90 30-124 16-108 (295)
46 cd08539 SAM_PNT-ESE-3-like Ste 25.1 42 0.00092 24.8 1.3 36 143-179 9-46 (74)
47 cd08757 SAM_PNT_ESE Sterile al 24.1 69 0.0015 23.1 2.3 33 144-179 7-43 (68)
48 cd08535 SAM_PNT-Tel_Yan Steril 24.0 70 0.0015 23.2 2.3 34 144-180 8-43 (68)
49 cd08536 SAM_PNT-Mae Sterile al 23.7 74 0.0016 22.9 2.3 32 145-179 8-41 (66)
50 cd08203 SAM_PNT Sterile alpha 23.6 74 0.0016 22.7 2.3 33 144-179 7-41 (66)
51 PF05858 BIV_Env: Bovine immun 23.6 50 0.0011 32.4 1.8 36 5-40 7-45 (548)
52 PHA00727 hypothetical protein 23.0 26 0.00056 30.9 -0.2 44 22-66 73-116 (278)
53 COG2452 Predicted site-specifi 20.8 2.6E+02 0.0057 24.6 5.5 75 28-114 72-155 (193)
54 KOG0607|consensus 20.6 35 0.00077 32.8 0.2 69 48-116 137-211 (463)
No 1
>KOG0517|consensus
Probab=100.00 E-value=2.8e-80 Score=642.63 Aligned_cols=268 Identities=53% Similarity=0.879 Sum_probs=258.7
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHH
Q psy4004 13 ASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNK 92 (319)
Q Consensus 13 ~~~~~~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~ 92 (319)
=+.+||+. |+++++.+||||||+|||+||...++.|.|||+||+||+.|++|||+|||+.+|+|.+++||+|++||+++
T Consensus 33 FErsRIKa-LadERe~vQKKTFTKWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdK 111 (2473)
T KOG0517|consen 33 FERSRIKA-LADEREAVQKKTFTKWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDK 111 (2473)
T ss_pred HHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHH
Confidence 46788954 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh------hhhhhhHHHHHHHhhhCCCCCcccccC
Q psy4004 93 ALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE------EMTAKEGLLLWCQRKTAPYKNVNVQNF 166 (319)
Q Consensus 93 aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~------~~~~k~~LL~W~q~~~~~~~~v~V~nf 166 (319)
||+|++...|.+.|||++||||||..+||||||+||++|||++|+++ ..|+|++||.|||.+|+|||+|+|+||
T Consensus 112 aLqFLkeqkVhLEniGshDIVDGN~rL~LGLIWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~nF 191 (2473)
T KOG0517|consen 112 ALQFLKEQKVHLENIGSHDIVDGNHRLILGLIWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNITNF 191 (2473)
T ss_pred HHHHHHhcccccccCCcccccCCcchhhHHHHHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccccC
Confidence 99999999999999999999999999999999999999999999875 578999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHh
Q psy4004 167 HLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAF 246 (319)
Q Consensus 167 s~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f 246 (319)
|+||+||++|+||||+||||++||+++.++++.+|++.||++|+++|||++||||||+ ++..||||||||||+.|||||
T Consensus 192 TtSWRdGLaFNALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV-~v~~PDEKSIITYV~~YYHyF 270 (2473)
T KOG0517|consen 192 TTSWRDGLAFNALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDV-NVEQPDEKSIITYVVTYYHYF 270 (2473)
T ss_pred ccchhcchhHHHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhc-CccCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 788999999999999999999
Q ss_pred cccchhhhhhhccccCCCCCcchhhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy4004 247 QGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD 318 (319)
Q Consensus 247 ~~~~~~~~~~~~~~~n~~~~de~~i~~yv~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
+ ++....+.++||+||++.++++++|+++||.++||
T Consensus 271 s------------------------------------KmK~~~v~gKRIgkVl~~lme~ekm~~~YE~Lasd 306 (2473)
T KOG0517|consen 271 S------------------------------------KMKQLAVEGKRIGKVLDQLMETEKMIEQYEGLASD 306 (2473)
T ss_pred H------------------------------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 66666688999999999999999999999999986
No 2
>KOG0035|consensus
Probab=100.00 E-value=8.9e-53 Score=425.97 Aligned_cols=276 Identities=72% Similarity=1.137 Sum_probs=263.3
Q ss_pred ccccCCchhhhHHHHHhHHHHHHHHHHHHHHHHHhhhc-ccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchh
Q psy4004 6 SFRPQRSASVGRIITFLQAVHAKSHLLTFTAWCNSHLR-KAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRF 84 (319)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~WiN~~L~-~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~ 84 (319)
.-|-+++.++.+. ..++..|+++|.+||+.|+|++|. ..+..|.++.+|++||..|+.|++.++|+.+++|.++.+|+
T Consensus 5 ~~~l~~e~~~a~~-~~~~~~~e~~q~kTft~W~~s~L~ir~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l~~~~~~~~r~ 83 (890)
T KOG0035|consen 5 LGRLQREEEWAAK-FLLTPAWEKVQLKTFTKWCNSKLRIRAGSSIEEIEEDFSNGLKLLILLEVISGENLPPPTRGKMRV 83 (890)
T ss_pred hhccchhhHHHHH-hhcCccHHHHhccccccccchhhhhcccCccchhhhhhhhhhhhhhhcccccCCccCCCCCCccch
Confidence 3455666777776 458999999999999999999999 77888999999999999999999999999999998889999
Q ss_pred hHhhhHHHHHHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh-hhhhhhHHHHHHHhhhCCCCCccc
Q psy4004 85 HKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE-EMTAKEGLLLWCQRKTAPYKNVNV 163 (319)
Q Consensus 85 ~~ieNv~~aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~-~~~~k~~LL~W~q~~~~~~~~v~V 163 (319)
|+++|++.+|.|++..|+.+++|++++|+|||.++++|++|+|+++|.|++++.. ..++++.||.|||++|++|.++.|
T Consensus 84 hk~En~~~~l~~~~sk~v~~~~iga~eivd~n~~~~l~~i~tlilr~~i~~is~~~e~~a~egllLwcq~~Ta~y~~v~v 163 (890)
T KOG0035|consen 84 HKLENVNKALVFIESKGVKLVSIGAEEIVDGNLKLTLGLIWTLILRFAIQDISVECELSAKEGLLLWCQRKTAPYSNVNV 163 (890)
T ss_pred hhhccccceEEEeccccccccccchhhhcCcchhhhhHHHHHhhccccccchhhhcchhhhhhhhhheecccCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhhCCCccc-cCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHH
Q psy4004 164 QNFHLSFKDGLAFCALIHRHRPELID-YHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCY 242 (319)
Q Consensus 164 ~nfs~sw~DG~al~aLi~~~~P~li~-~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l 242 (319)
.||++||+||.+|||+||+|||+++| |+.+++.++.+|++.||++|++.+|||++|+++|+++...||++.||||++++
T Consensus 164 ~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ld~ed~~~~~~pde~aimtyv~~~ 243 (890)
T KOG0035|consen 164 QNFHTSWKDGLAFCALIHRHRPDLIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRLLDAEDIVEAAIPDEKAIMTYVSSY 243 (890)
T ss_pred ccceecccchHHHHHHHHhcChhhhhhhhhcCccchhHHhhhhhhhhhhcCCcccccCccccccCCCCchhhhhhhhhhc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccchhhhhhhccccCCCCCcchhhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy4004 243 YHAFQGAQQVFHSRVQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLASD 318 (319)
Q Consensus 243 ~~~f~~~~~~~~~~~~~~~n~~~~de~~i~~yv~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
|++|+ +..+++++.++||++.++.++++.++++||+++++
T Consensus 244 ~~~fS------------------------------------g~~~~~t~~n~i~s~~av~qe~~~~~e~~e~~~s~ 283 (890)
T KOG0035|consen 244 YHAFS------------------------------------GAEAAETAANRICSVLAVNQEKETTMEEYETLASE 283 (890)
T ss_pred ccccc------------------------------------CcchhhhhcccccchhhccccccchHHHHHHHhhh
Confidence 99999 66678899999999999999999999999999974
No 3
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=100.00 E-value=8.4e-48 Score=362.97 Aligned_cols=258 Identities=39% Similarity=0.653 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC-CccchHHHhhhHHHHHHHHHHhcCCCCCCC-CCCCchhhHhhhHHHHHHHHHhC
Q psy4004 23 QAVHAKSHLLTFTAWCNSHLRKAGT-AIENIEEDFRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVNKALDFIASK 100 (319)
Q Consensus 23 ~~~~~~~q~~~f~~WiN~~L~~~~~-~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~-~~~~~r~~~ieNv~~aL~~lk~~ 100 (319)
..+|+.+|+++|++|.|..|...+. .+.||..|++||+.|.+|++.++......+ ..|.+|+|.++|++.+++|++..
T Consensus 3 a~kwq~vq~ktftkw~nekL~s~~~~~~~dL~~Dl~dgv~l~qlLe~~~kd~~g~yn~~p~tr~h~~envs~~le~ik~k 82 (612)
T COG5069 3 AKKWQKVQKKTFTKWTNEKLISGGQKEFGDLDTDLKDGVKLAQLLEALQKDNAGEYNETPETRIHVMENVSGRLEFIKGK 82 (612)
T ss_pred hHHHHHHhhccchHHHhHHHhhcccHHHhhhccccccHHHHHHHHHHhhhccccccCCCHHHHHHHhhccccceeeeccC
Confidence 4589999999999999999987554 599999999999999999999998877665 57899999999999999999999
Q ss_pred CceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchhh-hhhhhHHHHHHHhhhCCCC-CcccccCCCCCcchHHHHH
Q psy4004 101 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEE-MTAKEGLLLWCQRKTAPYK-NVNVQNFHLSFKDGLAFCA 178 (319)
Q Consensus 101 gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~~-~~~k~~LL~W~q~~~~~~~-~v~V~nfs~sw~DG~al~a 178 (319)
|+++.||+|.||||||+++++||||++|.++.+..|..+. .+....++.||++.+++|. .+.+.+|+.||+||+|||+
T Consensus 83 g~~l~Nigp~divdGn~klilGliw~lisr~tia~inEegelt~~~~lllwc~~~t~~y~p~vd~~df~rswrdGLaf~a 162 (612)
T COG5069 83 GVKLFNIGPQDIVDGNPKLILGLIWSLISRLTIATINEEGELTKHINLLLWCDEDTGGYKPEVDTFDFFRSWRDGLAFSA 162 (612)
T ss_pred CceeeeeCccccccCchhhhheeeeeeeehhhhhcccchhhHHhhhhhheeccccccCcCCCccHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999998765 7788899999999999985 4889999999999999999
Q ss_pred HHHhhCCCccccCCCC--CCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhcccchhhhhh
Q psy4004 179 LIHRHRPELIDYHKLS--KDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSR 256 (319)
Q Consensus 179 Li~~~~P~li~~~~l~--~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~~~~~~~~~~ 256 (319)
|||.++||++|+..++ ..+...|...||+.|++-+|||+++..+|++++..|||+++||||+-+|+.|.
T Consensus 163 LIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~rli~vedivnV~~pDERsimtyv~~y~~rf~--------- 233 (612)
T COG5069 163 LIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSWYIIRFG--------- 233 (612)
T ss_pred HHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchHhhcCcceeeecCCcchHHHHHHHHHHHHHHh---------
Confidence 9999999999998887 78889999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCcchhhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4004 257 VQHMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLA 316 (319)
Q Consensus 257 ~~~~~n~~~~de~~i~~yv~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
-..|.+.+.+|+-+++...+....|.-.||..+
T Consensus 234 ---------------------------~l~Kid~al~rv~rllE~~et~~qlrl~yE~~l 266 (612)
T COG5069 234 ---------------------------LLEKIDIALHRVYRLLEADETLIQLRLPYEIIL 266 (612)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 677889888899999999999999988888754
No 4
>KOG0046|consensus
Probab=99.97 E-value=1.1e-30 Score=249.66 Aligned_cols=219 Identities=26% Similarity=0.426 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC------CCCCchhhHhhhHHHHHH
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP------DRGKMRFHKIANVNKALD 95 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~------~~~~~r~~~ieNv~~aL~ 95 (319)
-.+..+..+.++|+.|+|+. ...+.|+++|+|++||.+|.++++++++..+.+. ..-.+.+.++|||++|++
T Consensus 381 ~~~~~~~reer~fr~WmNSl--gv~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~ 458 (627)
T KOG0046|consen 381 TEDEEESREERTFRLWMNSL--GVNPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVK 458 (627)
T ss_pred chhHhHHHHHHHHHHHHHhc--CCcHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHH
Confidence 34567778899999999997 5567799999999999999999999999877432 122456899999999999
Q ss_pred HHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh----hhhhhhHHHHHHHhhhCC-CCCcccccCCC-C
Q psy4004 96 FIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE----EMTAKEGLLLWCQRKTAP-YKNVNVQNFHL-S 169 (319)
Q Consensus 96 ~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~----~~~~k~~LL~W~q~~~~~-~~~v~V~nfs~-s 169 (319)
..++.+..+++|.+.||+|||.++||+|+||||++|.++-+..- .....+.++.|+|+++.. .+.-.|.+|.+ +
T Consensus 459 lGk~~~FSLVgi~G~DI~dGNk~LtLAlvWQLMR~ytL~vL~~l~~~~~~~tD~dIv~WaN~klk~~Gk~s~IrSFkD~s 538 (627)
T KOG0046|consen 459 LGKQLKFSLVGIAGQDIVDGNKTLTLALVWQLMRRYTLQVLKSLRSGGKDITDSDIVNWANRKLKKAGKKSQIRSFKDKS 538 (627)
T ss_pred HHhhcceeeeccccccccccchHhHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhcCCccccccccCcc
Confidence 99999999999999999999999999999999999988654321 224567899999999863 44668999996 9
Q ss_pred CcchHHHHHHHHhhCCCccccCCCCC----CChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 170 FKDGLAFCALIHRHRPELIDYHKLSK----DNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 170 w~DG~al~aLi~~~~P~li~~~~l~~----~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
.+||+.+..||+++.|..|||+-+++ ++...|+++|+++|++ +|+..++-|||++++. .|+|||..+++|.+
T Consensus 539 iS~g~~vLDLidaI~P~~Vn~~LV~~G~t~EdK~~NAkYaIS~ARK-iGa~IyaLPEDIvEV~---pKMvltvfA~lM~~ 614 (627)
T KOG0046|consen 539 ISDGLFVLDLLDAIKPGVVNYSLVTSGNTDEEKLLNAKYAISVARK-LGASIYALPEDIVEVN---PKMVLTVFASLMAW 614 (627)
T ss_pred cccCcchHHHHhhcCcCccchhhccCCCChhhhhhcchhhHhHHHh-hCceEEeccHHHhhhc---hhhhHHHHHHHHHh
Confidence 99999999999999999999998864 5668999999999997 9999999999999753 69999999999866
Q ss_pred h
Q psy4004 246 F 246 (319)
Q Consensus 246 f 246 (319)
-
T Consensus 615 ~ 615 (627)
T KOG0046|consen 615 S 615 (627)
T ss_pred c
Confidence 3
No 5
>KOG0046|consensus
Probab=99.97 E-value=5.8e-30 Score=244.70 Aligned_cols=277 Identities=21% Similarity=0.367 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccC-----C----CccchHHHhhhHHHHHHHHHHhcCCCCCCC----CCCCchhhHhhhHH
Q psy4004 25 VHAKSHLLTFTAWCNSHLRKAG-----T----AIENIEEDFRNGLKLMLLLEVISGETLPKP----DRGKMRFHKIANVN 91 (319)
Q Consensus 25 ~~~~~q~~~f~~WiN~~L~~~~-----~----~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~----~~~~~r~~~ieNv~ 91 (319)
...+.++..|++|||+.|+..+ + .-++||+.++||++||+|++.--+.++... ++..++++..||.+
T Consensus 115 ti~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~ 194 (627)
T KOG0046|consen 115 TINEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLN 194 (627)
T ss_pred eecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchh
Confidence 4556678999999999998764 2 245999999999999999999888877431 56788999999999
Q ss_pred HHHHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh-------------------hhhhhhHHHHHHH
Q psy4004 92 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE-------------------EMTAKEGLLLWCQ 152 (319)
Q Consensus 92 ~aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~-------------------~~~~k~~LL~W~q 152 (319)
.||+-++..||.++||+++||.+|.+.++||||||||+...+.++... ..++++.||+|+|
T Consensus 195 l~lnSAkAiGc~VvNIga~Dl~eGrphLVLGLiwQiIkiglladi~l~~~p~L~~Ll~d~e~lEelm~L~PEkiLLrW~N 274 (627)
T KOG0046|consen 195 LALNSAKAIGCTVVNIGAQDLAEGRPHLVLGLIWQIIKIGLLADINLKKNPQLVRLLEDGETLEELMRLPPEKILLRWMN 274 (627)
T ss_pred hHHhhcccccceEEecCchhhhcCCceeeHHHHHHHHHHHHhhhcccccCHHHHHHHhCCccHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988877542 4578999999999
Q ss_pred hhhC--CCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCC
Q psy4004 153 RKTA--PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKP 230 (319)
Q Consensus 153 ~~~~--~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~p 230 (319)
.+++ +| ...++||+++..||.++..|++..-|+..+...+...+..++.+..++-|++ +||.++++|.|++++.
T Consensus 275 ~HL~kag~-~k~~~nFs~DikD~eaY~~LLnqlap~~~~~~~l~~~d~l~RA~~vLq~Aek-l~Cr~~ltp~dvV~G~-- 350 (627)
T KOG0046|consen 275 YHLKKAGW-KKTVTNFSSDIKDSEAYTHLLNQLAPEHCSPAPLQETDDLERAELVLQQAEK-LDCRRYLTPTDVVAGN-- 350 (627)
T ss_pred HHHHhccc-ceehhhhhhhhccHHHHHHHHHHhccccCCccccccCChHhHHHHHHHHHHh-cCCccccCHHHHhcCC--
Confidence 9986 44 4678999999999999999999999999999999999999999999999997 9999999999999753
Q ss_pred ChhhHHHHHHHHHHHhcccchhhhhhhccccCCCCC---cchhhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy4004 231 DERAIMTYVSCYYHAFQGAQQVFHSRVQHMTNTAMP---DERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENER 307 (319)
Q Consensus 231 De~si~~yls~l~~~f~~~~~~~~~~~~~~~n~~~~---de~~i~~yv~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 307 (319)
.+..+.||+.+|+.++|...........+...... .+|.--.|+.++ -....+..+..-++.-..
T Consensus 351 -~kLNLAFVA~lFn~~pgL~~~~~~~~~e~~~~~~~~~reer~fr~WmNSl-----------gv~p~vn~~f~Dl~dglV 418 (627)
T KOG0046|consen 351 -PKLNLAFVANLFNTHPGLEKPENEEIAEMMTEDEEESREERTFRLWMNSL-----------GVNPYVNNLFEDLRDGLV 418 (627)
T ss_pred -chhhHHHHHHhcccCCCCCCccccchhcccchhHhHHHHHHHHHHHHHhc-----------CCcHHHHHHHHhhhhhhH
Confidence 58999999999999997665433222111111111 111111122222 123345566677777777
Q ss_pred HHHHHHHhcc
Q psy4004 308 LMEEYERLAS 317 (319)
Q Consensus 308 ~~~~~~~~~~ 317 (319)
+-+-||+...
T Consensus 419 llq~~dki~p 428 (627)
T KOG0046|consen 419 LLQLYDKVSP 428 (627)
T ss_pred HHHHHHHccC
Confidence 7777777654
No 6
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.76 E-value=2.3e-18 Score=136.60 Aligned_cols=103 Identities=33% Similarity=0.640 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhhhcccCC-CccchHHHhhhHHHHHHHHHHhcCCCCCCCC-CCCchhhHhhhHHHHHHHHHhCCceeeec
Q psy4004 30 HLLTFTAWCNSHLRKAGT-AIENIEEDFRNGLKLMLLLEVISGETLPKPD-RGKMRFHKIANVNKALDFIASKGVKLVSI 107 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~~~-~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~-~~~~r~~~ieNv~~aL~~lk~~gv~l~~i 107 (319)
|++++++|||.++...+. .++|+.++|+||++||+|++.+.|..++... .+.+++++++|++.++++++..|++...+
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~~~ 81 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVVNF 81 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCceecc
Confidence 688999999999998876 7999999999999999999999999987643 27889999999999999999999987689
Q ss_pred Cchhhh-ccchhhhhhHHHHHHHHhh
Q psy4004 108 GAEEIV-DGNLKMTLGMIWTIILRFA 132 (319)
Q Consensus 108 ~~~dIv-dgn~k~iLgLiW~li~~f~ 132 (319)
.++||+ +||.+.+++++|+|+.+|.
T Consensus 82 ~~~Dl~~~~n~~~vl~~l~~l~~~~~ 107 (107)
T cd00014 82 DAEDLVEDGDEKLVLGLLWSLIRKFL 107 (107)
T ss_pred CHHHHhhCCCceeeHHHHHHHHHhhC
Confidence 999999 9999999999999999884
No 7
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.74 E-value=6.9e-18 Score=133.98 Aligned_cols=102 Identities=34% Similarity=0.688 Sum_probs=90.7
Q ss_pred hhHHHHHHHhhhCCC-CCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCC-----ChhhhHHHHHHHHHHhCCCCC
Q psy4004 144 KEGLLLWCQRKTAPY-KNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD-----NPLQNLNTAFDVAEKYLDIPR 217 (319)
Q Consensus 144 k~~LL~W~q~~~~~~-~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~-----~~~~n~~~a~~~a~~~lgip~ 217 (319)
++.|++|||.++..+ .+.+|+||.++|+||++||.||+.+.|+.+++..+.+. +..+|++.|++++++.+|+|.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 468999999999876 36789999999999999999999999999999988443 579999999999999899999
Q ss_pred CCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 218 MLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 218 ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
.++++|+.+ .+|++.++.|+++++++|+
T Consensus 81 ~~~~~dl~~--~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 81 LLSPEDLVE--KGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp TS-HHHHHS--TT-HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHH--CcCHHHHHHHHHHHHHHHC
Confidence 999999985 7899999999999999985
No 8
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.74 E-value=7.9e-18 Score=132.39 Aligned_cols=98 Identities=39% Similarity=0.626 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCC--CCCCchhhHhhhHHHHHHHHHhCCceeeec
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANVNKALDFIASKGVKLVSI 107 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~--~~~~~r~~~ieNv~~aL~~lk~~gv~l~~i 107 (319)
++++++|+|.++... +..|+|+.++|+||++||+|++.+.|..++.. ..+.+++++++|++.+++++++.|+....+
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~ 81 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKLVLF 81 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCeeecc
Confidence 578999999999987 47799999999999999999999999998754 247778999999999999999999888899
Q ss_pred CchhhhccchhhhhhHHHHHHH
Q psy4004 108 GAEEIVDGNLKMTLGMIWTIIL 129 (319)
Q Consensus 108 ~~~dIvdgn~k~iLgLiW~li~ 129 (319)
.++||++|+ +.+++++|+|+.
T Consensus 82 ~~~Dl~~~~-k~~~~v~~~l~~ 102 (103)
T smart00033 82 EPEDLVEGN-KLILGVIWTLIL 102 (103)
T ss_pred CHHHHhhcc-hHHHHHHHHHHh
Confidence 999999999 999999999975
No 9
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.68 E-value=4.1e-17 Score=129.43 Aligned_cols=102 Identities=36% Similarity=0.661 Sum_probs=91.4
Q ss_pred hhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCC---CCCChhhhHHHHHHHHHHhCCCCCC-
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKL---SKDNPLQNLNTAFDVAEKYLDIPRM- 218 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l---~~~~~~~n~~~a~~~a~~~lgip~l- 218 (319)
.++.+++||+..+..+..+.++||.++|+||++||+|++.+.|+.+++... ......+|++.+++.+++ +|+|..
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~-~gi~~~~ 80 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEK-LGVPVVN 80 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHH-cCCceec
Confidence 467899999999998865689999999999999999999999999977663 456778999999999997 999998
Q ss_pred CCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 219 LDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 219 l~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
++|+|+.+ .+|++.|++|+++++++|.
T Consensus 81 ~~~~Dl~~--~~n~~~vl~~l~~l~~~~~ 107 (107)
T cd00014 81 FDAEDLVE--DGDEKLVLGLLWSLIRKFL 107 (107)
T ss_pred cCHHHHhh--CCCceeeHHHHHHHHHhhC
Confidence 99999974 6899999999999999874
No 10
>KOG3631|consensus
Probab=99.66 E-value=1e-15 Score=136.69 Aligned_cols=211 Identities=17% Similarity=0.308 Sum_probs=166.9
Q ss_pred HHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHh-CCce--eeecC
Q psy4004 32 LTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIAS-KGVK--LVSIG 108 (319)
Q Consensus 32 ~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~-~gv~--l~~i~ 108 (319)
+.+..|||..|....+.|.+|.+|+-||.+|.+|+|+|.+.++..+....+.+-+-+.++.+++.+.. .+.+ -..++
T Consensus 93 kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~klev~evtqse~~QkqKLq~Vleavnr~L~~~~~q~kWs 172 (365)
T KOG3631|consen 93 KVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALKLEVAEVTQSEIGQKQKLQTVLEAVNRSLQLPEWQAKWS 172 (365)
T ss_pred HHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhhccchhhhhhhHHHHHHHHHHHHHHHHHhcCchhhhccc
Confidence 78999999999988889999999999999999999999999987765555555555556666665544 2222 33589
Q ss_pred chhhhccchhhhhhHHHHHHHHhhhcc-----cchh--------------------------------------------
Q psy4004 109 AEEIVDGNLKMTLGMIWTIILRFAIQD-----ISVE-------------------------------------------- 139 (319)
Q Consensus 109 ~~dIvdgn~k~iLgLiW~li~~f~i~~-----i~~~-------------------------------------------- 139 (319)
++-|.+.+.-+||.|+-.+..||+..- ++.+
T Consensus 173 vdsIh~Kdl~ailhLLVaLa~~frapirlPdnV~v~Vvvvqk~~g~lks~~i~EqlT~~tt~l~~~~~rDaFDtLFd~aP 252 (365)
T KOG3631|consen 173 VDSIHNKDLVAILHLLVALAKHFRAPIRLPDNVQVQVVVVQKREGGLKSEKIVEQLTTYTTDLDGRPERDAFDTLFDHAP 252 (365)
T ss_pred hhhhccchHHHHHHHHHHHHHHcCCCccCCCceEEEEEEEEeccccchHHHHHHHHhhhhHhhcCCCchhhHHHHHhhCc
Confidence 999999999999999999999997531 1000
Q ss_pred --hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCC-----CCCChhhhHHHHHHHHHHh
Q psy4004 140 --EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKL-----SKDNPLQNLNTAFDVAEKY 212 (319)
Q Consensus 140 --~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l-----~~~~~~~n~~~a~~~a~~~ 212 (319)
-...|+.|+.+||.++... +++|+++.+.|+||..+.-|+.....-.++...+ +.....+|...||+..++
T Consensus 253 dKln~VK~sli~FvNkhLnkl-nLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~D- 330 (365)
T KOG3631|consen 253 DKLNVVKKSLITFVNKHLNKL-NLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMKD- 330 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-cceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHHc-
Confidence 1246788999999999877 8999999999999999998888776666654443 234568999999999998
Q ss_pred CCCC-CCCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 213 LDIP-RMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 213 lgip-~ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
.|.. +-..|||+++ .|-+|.+..+..+|..|.
T Consensus 331 ~GL~kp~~rpeDIvN---~D~KSTLRvLy~LFtKyk 363 (365)
T KOG3631|consen 331 GGLEKPKVRPEDIVN---KDLKSTLRVLYNLFTKYK 363 (365)
T ss_pred cCcCCCCCChHHhhc---ccHHHHHHHHHHHHHhhc
Confidence 7775 4699999984 689999988777766554
No 11
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.64 E-value=5.9e-16 Score=122.83 Aligned_cols=101 Identities=29% Similarity=0.490 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhhccc--CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCC---CCCchhhHhhhHHHHHHHHHh-CCcee
Q psy4004 31 LLTFTAWCNSHLRKA--GTAIENIEEDFRNGLKLMLLLEVISGETLPKPD---RGKMRFHKIANVNKALDFIAS-KGVKL 104 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~--~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~---~~~~r~~~ieNv~~aL~~lk~-~gv~l 104 (319)
++.+.+|||.++... +.+|.|+.+||+||++||+|++.+.|..++... ...+.+++++|++.+++++++ .|++.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 478999999999987 678999999999999999999999999875321 112789999999999999999 89997
Q ss_pred eecCchhhh-ccchhhhhhHHHHHHHHhh
Q psy4004 105 VSIGAEEIV-DGNLKMTLGMIWTIILRFA 132 (319)
Q Consensus 105 ~~i~~~dIv-dgn~k~iLgLiW~li~~f~ 132 (319)
.. .++||+ +|+.+.+++++|+|+.+|+
T Consensus 81 ~~-~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 81 LL-SPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp TS--HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred CC-CHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 75 999999 9999999999999999985
No 12
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.58 E-value=9e-16 Score=120.61 Aligned_cols=97 Identities=27% Similarity=0.432 Sum_probs=81.8
Q ss_pred hhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC----CCChhhhHHHHHHHHHHhCCCCCCC
Q psy4004 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS----KDNPLQNLNTAFDVAEKYLDIPRML 219 (319)
Q Consensus 144 k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~----~~~~~~n~~~a~~~a~~~lgip~ll 219 (319)
++.++.|||..+..+.+..|.||+++|+||.+||+|++.+.|+.++..... .....+|++.+++.+++..+.+.++
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~ 81 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKLVLF 81 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCeeecc
Confidence 578999999999988678899999999999999999999999999876654 2345799999999999863347899
Q ss_pred CcccccCCCCCChhhHHHHHHH
Q psy4004 220 DPEDLINTPKPDERAIMTYVSC 241 (319)
Q Consensus 220 ~~eD~~~~~~pDe~si~~yls~ 241 (319)
+|+|++++. ++..+++.|+..
T Consensus 82 ~~~Dl~~~~-k~~~~v~~~l~~ 102 (103)
T smart00033 82 EPEDLVEGN-KLILGVIWTLIL 102 (103)
T ss_pred CHHHHhhcc-hHHHHHHHHHHh
Confidence 999998754 777777777654
No 13
>KOG3631|consensus
Probab=99.30 E-value=1.2e-11 Score=110.82 Aligned_cols=111 Identities=21% Similarity=0.384 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC---CCCCchhhHhhhHHHHHHHHH
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP---DRGKMRFHKIANVNKALDFIA 98 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~~~~r~~~ieNv~~aL~~lk 98 (319)
...+-...-|+++..++|.||.+-+..|.+|.+.|.||+.|.-|+..|.|-.+|-+ -.|.+.-++++|++.|++.++
T Consensus 250 ~aPdKln~VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~ 329 (365)
T KOG3631|consen 250 HAPDKLNVVKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMK 329 (365)
T ss_pred hCcHHHHHHHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHH
Confidence 45666777899999999999999999999999999999999999999999998864 478888999999999999999
Q ss_pred hCCceeeecCchhhhccchhhhhhHHHHHHHHhh
Q psy4004 99 SKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFA 132 (319)
Q Consensus 99 ~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~ 132 (319)
+.|..-+..+|+||++++.|.+|.+++.++-+|.
T Consensus 330 D~GL~kp~~rpeDIvN~D~KSTLRvLy~LFtKyk 363 (365)
T KOG3631|consen 330 DGGLEKPKVRPEDIVNKDLKSTLRVLYNLFTKYK 363 (365)
T ss_pred ccCcCCCCCChHHhhcccHHHHHHHHHHHHHhhc
Confidence 9999988999999999999999999999998763
No 14
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.27 E-value=2.6e-11 Score=116.22 Aligned_cols=212 Identities=21% Similarity=0.317 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhc-CCCCCCC--------CCCCchhhHhhhHHHHHHH
Q psy4004 26 HAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVIS-GETLPKP--------DRGKMRFHKIANVNKALDF 96 (319)
Q Consensus 26 ~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~-~~~~~~~--------~~~~~r~~~ieNv~~aL~~ 96 (319)
..+.+.+.||-|.|++ ...+.|.|++.|++||..+.+.++... +..+..+ ....+|+...+|++++.++
T Consensus 376 e~efear~~Tf~l~~~--~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG~E~~rfka~en~nyavdl 453 (612)
T COG5069 376 EGEFEARVFTFWLNSL--DVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASGIEENRFKAFENENYAVDL 453 (612)
T ss_pred hhHHHHHHHHHHHHHh--cCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccccccchhhhhhhhcccchhhhh
Confidence 3445678999999998 456789999999999999999998766 5555332 1236799999999999999
Q ss_pred HHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcc---c-chhhhhhhhHHHHHHHhhhCCC-CCcccccCCC-CC
Q psy4004 97 IASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQD---I-SVEEMTAKEGLLLWCQRKTAPY-KNVNVQNFHL-SF 170 (319)
Q Consensus 97 lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~---i-~~~~~~~k~~LL~W~q~~~~~~-~~v~V~nfs~-sw 170 (319)
-...|+.+++|..-||.+|+. ..++|.|+.++.-.--- . ..+..-....+..|.++....| .+-.+..|.. +-
T Consensus 454 G~~~gf~~v~ik~le~~~~~r-~k~tl~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~ 532 (612)
T COG5069 454 GITEGFSLVGIKGLEILDGIR-LKLTLVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAG 532 (612)
T ss_pred hhhcCeeeeeechhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcc
Confidence 999999999999999999998 99999999886532110 0 0112223456888988765444 2345677764 55
Q ss_pred cc-hHHHHHHHHhhCCCccccCCCCCC----ChhhhHH-HHHH--HHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHH
Q psy4004 171 KD-GLAFCALIHRHRPELIDYHKLSKD----NPLQNLN-TAFD--VAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCY 242 (319)
Q Consensus 171 ~D-G~al~aLi~~~~P~li~~~~l~~~----~~~~n~~-~a~~--~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l 242 (319)
+. |.-+..+++-..|+++||+.++.. ....|.+ +|++ ++++ +|--..+-|+||.. ..| ..-+++|+.+|
T Consensus 533 s~~gv~yl~v~~~i~sel~D~d~v~~~~~~f~diad~rsl~is~~ilRs-~~aii~~lpe~in~-~r~-~Ldvltfi~sl 609 (612)
T COG5069 533 SVSGVFYLDVLKGIHSELVDYDLVTRGFTEFDDIADARSLAISSKILRS-LGAIIKFLPEDING-VRP-RLDVLTFIESL 609 (612)
T ss_pred ccccchHHHHHHHHhhhhcChhhhhhhHHHHHHhhhhhhhhccHHHHHH-hhhHheechhhhcc-cCc-cchHHHHHHHH
Confidence 55 888999999999999999998753 4467777 8888 8887 56435577899853 334 34488988887
Q ss_pred H
Q psy4004 243 Y 243 (319)
Q Consensus 243 ~ 243 (319)
+
T Consensus 610 m 610 (612)
T COG5069 610 M 610 (612)
T ss_pred h
Confidence 6
No 15
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=99.26 E-value=2e-12 Score=98.60 Aligned_cols=76 Identities=32% Similarity=0.578 Sum_probs=64.9
Q ss_pred HHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC------CCChhhhHHHHHHHHHHhCCCCCC-CCcc
Q psy4004 150 WCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS------KDNPLQNLNTAFDVAEKYLDIPRM-LDPE 222 (319)
Q Consensus 150 W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~------~~~~~~n~~~a~~~a~~~lgip~l-l~~e 222 (319)
|++.....+ +..|.||+.||+||.+||+|||+|+|++++++.+. ..+...|++...+.+.+.||.... +++|
T Consensus 1 ~~~~~~~~~-~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~e 79 (85)
T PF11971_consen 1 WVNARCAPY-FPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPE 79 (85)
T ss_pred CCCcccCCC-CcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHH
Confidence 566666555 78999999999999999999999999999997775 246689999999999999988664 7999
Q ss_pred cccC
Q psy4004 223 DLIN 226 (319)
Q Consensus 223 D~~~ 226 (319)
|+..
T Consensus 80 dl~~ 83 (85)
T PF11971_consen 80 DLLY 83 (85)
T ss_pred HHhc
Confidence 9864
No 16
>KOG0518|consensus
Probab=99.05 E-value=4.3e-13 Score=138.03 Aligned_cols=215 Identities=21% Similarity=0.183 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCC--CCCchhhHhhhHHHHHHHHHhC
Q psy4004 23 QAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPD--RGKMRFHKIANVNKALDFIASK 100 (319)
Q Consensus 23 ~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~--~~~~r~~~ieNv~~aL~~lk~~ 100 (319)
.++|.-++...+|.|+-.+....|..+.+|..++.||+.|..++++++.....+.+ .|- ++..+|++.|+++....
T Consensus 20 ~ae~~i~~~~~~T~~~t~~~~~aG~~~~slk~~~~dg~~~p~~v~vl~~~~~skv~~~~p~--~q~~~~v~~a~~~ft~d 97 (1113)
T KOG0518|consen 20 VAEVKIQDNLDGTVTVTYDPQRAGFYILSLKYDGSDGVNLPSLVQVLSAVDTSKVKKKGPG--IQGLHNVREALNKFTVD 97 (1113)
T ss_pred ceeeEEEecCCceEEEEEccccCcceeEEEEecCccccccceeeEEeeccccceeEEecCC--ccCcchhhhhhhhhhhc
Confidence 44566666777777777777778888999999999999999999999988766542 232 89999999999999988
Q ss_pred CceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchhhhhhhhHHHHHHHhhhC-----CCCCcccccCCCCCcchHH
Q psy4004 101 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTA-----PYKNVNVQNFHLSFKDGLA 175 (319)
Q Consensus 101 gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~~~~~k~~LL~W~q~~~~-----~~~~v~V~nfs~sw~DG~a 175 (319)
+..+++|+..+|++++.+++++++|+++.++ ...+-..+...++.=+.|.+.... .-+.+.+.+|+++|.||.|
T Consensus 98 ~r~~~nigs~hivd~v~~~~g~~~~~~v~~~-~dg~y~~k~~p~e~~~h~~e~~~~e~~~~~sP~~~~v~~~td~n~~~A 176 (1113)
T KOG0518|consen 98 NRKETNIGSAHIVDHVVKLIGSLTWTLVQDY-GDGIYKTKRTPKEKGEHEVEVLYDEKPVPASPFVVKVNEGTDWNDVQA 176 (1113)
T ss_pred cceeeccCCcccccccccccccceeEeeecc-CCcceeeecCchhccchhhhhhhcccccccCCceeccccccCcccceE
Confidence 8889999999999999999999999999988 222222234455555566654221 2356788999999999999
Q ss_pred HHHHHHhhCCCcc-ccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCc----ccccCCCCCChhhHHHHHHH
Q psy4004 176 FCALIHRHRPELI-DYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDP----EDLINTPKPDERAIMTYVSC 241 (319)
Q Consensus 176 l~aLi~~~~P~li-~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~----eD~~~~~~pDe~si~~yls~ 241 (319)
+-+++..-+|+.. .|..........|+..|++-+++.+-.++...+ -.+.. ..||+.++++|++.
T Consensus 177 lg~~le~~~vg~p~~f~v~~~Ga~~gnl~~a~~gpse~~~~~~di~~g~c~veyip-~~~gd~sv~~~~gg 246 (1113)
T KOG0518|consen 177 LGPGLESARVGKPNVFEVETPGAGQGNLEVAVEGPSEALTVIPDIKPGSCSVEYIP-PEPGDYSVNTYYGG 246 (1113)
T ss_pred eccchhhcccCCCceeEEecCCccccceeeeecChhhhcccccccCCCcceeeecC-CCCCceEEeeeecc
Confidence 9999999999977 778777888899999999999988888888777 55653 68999999999866
No 17
>KOG2046|consensus
Probab=98.83 E-value=1.6e-08 Score=87.36 Aligned_cols=109 Identities=14% Similarity=0.222 Sum_probs=89.7
Q ss_pred ccCCchhhhHHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHh
Q psy4004 8 RPQRSASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKI 87 (319)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~i 87 (319)
|++.++--..+..+++..++...++....||-..+......=.|+.+-|+||++||+|++.|.+..+++.+.+.+.++++
T Consensus 4 ~~~~~gl~~~v~~k~~~k~~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qm 83 (193)
T KOG2046|consen 4 RGPSYGLSREVQQKIESKYDDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQM 83 (193)
T ss_pred CCCccchHHHHHHHhhcccCHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHH
Confidence 66677777788888999999999999999999974443333579999999999999999999996666556899999999
Q ss_pred hhHHHHHHHHHhCCceeee-cCchhhhccc
Q psy4004 88 ANVNKALDFIASKGVKLVS-IGAEEIVDGN 116 (319)
Q Consensus 88 eNv~~aL~~lk~~gv~l~~-i~~~dIvdgn 116 (319)
||++.-+.+++..|++-.. .-+.|+.+|.
T Consensus 84 EnIs~Fi~a~~~ygv~~~d~FqtvDLfE~k 113 (193)
T KOG2046|consen 84 ENISNFIKAAKKYGVPEVDLFQTVDLFEGK 113 (193)
T ss_pred HHHHHHHHHHHhcCCChhhcccccccccCC
Confidence 9999999999999987443 4456777764
No 18
>KOG0035|consensus
Probab=98.45 E-value=2.2e-07 Score=96.33 Aligned_cols=211 Identities=19% Similarity=0.214 Sum_probs=156.2
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHh-CCceeeecC
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIAS-KGVKLVSIG 108 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~-~gv~l~~i~ 108 (319)
+....-|+...-+.. +..|.++.+..+||..+|.+++.-.+.-++.+ ...+.-..++|++.|.+.+.. .|++-. +.
T Consensus 144 ~egllLwcq~~Ta~y~~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y-~~lt~~~~~~n~~~A~~iAek~l~i~r~-ld 221 (890)
T KOG0035|consen 144 KEGLLLWCQRKTAPYSNVNVQNFHTSWKDGLAFCALIHRHRPDLIDQY-DKLTKQDPVENLNLAFDIAEKFLGIPRL-LD 221 (890)
T ss_pred hhhhhhheecccCCccccccccceecccchHHHHHHHHhcChhhhhhh-hhcCccchhHHhhhhhhhhhhcCCcccc-cC
Confidence 455677877664443 35688999999999999999999888877742 234455779999999999887 666532 67
Q ss_pred chhhhcc---chhhhhhHHHHHHHHhhhcc-----------------------------cc-------------------
Q psy4004 109 AEEIVDG---NLKMTLGMIWTIILRFAIQD-----------------------------IS------------------- 137 (319)
Q Consensus 109 ~~dIvdg---n~k~iLgLiW~li~~f~i~~-----------------------------i~------------------- 137 (319)
++|+++- +.+.|..-+-+....|.... .+
T Consensus 222 ~ed~~~~~~pde~aimtyv~~~~~~fSg~~~~~t~~n~i~s~~av~qe~~~~~e~~e~~~s~~l~~~~~~~P~l~~r~~~ 301 (890)
T KOG0035|consen 222 AEDIVEAAIPDEKAIMTYVSSYYHAFSGAEAAETAANRICSVLAVNQEKETTMEEYETLASELLEWIARRTPWLQNRVTD 301 (890)
T ss_pred ccccccCCCCchhhhhhhhhhccccccCcchhhhhcccccchhhccccccchHHHHHHHhhhhhhHHHhcCccccccccc
Confidence 7777765 33344433333333333110 00
Q ss_pred ----------------------hh--------------------------------------------------------
Q psy4004 138 ----------------------VE-------------------------------------------------------- 139 (319)
Q Consensus 138 ----------------------~~-------------------------------------------------------- 139 (319)
.+
T Consensus 302 ~~~~~~q~~l~~~rd~~~r~~~~e~~v~~~~~~~~~~st~q~k~~~~~~p~~~~s~~~~~S~~~~~~~~le~~~~~~e~~ 381 (890)
T KOG0035|consen 302 SVGAKAQRKLEFSRDAVYRRLEKEPLVEDKGRLESGFSTLQTKLRLESRPAKLASSGVLVSDINDAWQGLEQAEKLYEES 381 (890)
T ss_pred chhhhhccccccccccccccccccccccccccccccchhhhhhhhhhcccccCcccccccccccccccchhhhccccccc
Confidence 00
Q ss_pred -------------------------------------hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHh
Q psy4004 140 -------------------------------------EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHR 182 (319)
Q Consensus 140 -------------------------------------~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~ 182 (319)
.......||.||+..+.+|+.+++.++ ++|..|.+||||+|.
T Consensus 382 ll~~~~~l~~~~~~~~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~-~~~~~~e~~~ai~~~ 460 (890)
T KOG0035|consen 382 LLAEIRRLERLEHLASKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLS-AHQDNVEAFCAIAHE 460 (890)
T ss_pred chhhhHHHhhhhhhhhhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchh-hhhcchhHHHHHHHH
Confidence 001223589999999999999999999 999999999999999
Q ss_pred hCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhcc
Q psy4004 183 HRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQG 248 (319)
Q Consensus 183 ~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~~ 248 (319)
|.|+.+++..+...+..+|+..+++.+. + +++..|.++.....||...+|+|.-+...++.+
T Consensus 461 ~~~~~~~~~~~~a~~~q~i~dq~~~~~~--l--s~~r~pal~~~~~~~dk~~~~~le~a~Raa~~~ 522 (890)
T KOG0035|consen 461 LNELLYDDAKLVAADCQHICDQWDDLGQ--L--SRKRRPALMQMEKVLDKLAVLTLEFAKRAAPFN 522 (890)
T ss_pred hhhhhhhhhhhhhhhhhhccccccccch--h--hhhhchhhhhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999988765 2 788888887766778888999998777766654
No 19
>KOG0517|consensus
Probab=98.20 E-value=2.6e-06 Score=92.60 Aligned_cols=156 Identities=21% Similarity=0.314 Sum_probs=113.2
Q ss_pred hhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCC--CChhhhHHHHHHHHHHhCCCC-C
Q psy4004 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSK--DNPLQNLNTAFDVAEKYLDIP-R 217 (319)
Q Consensus 141 ~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~--~~~~~n~~~a~~~a~~~lgip-~ 217 (319)
...|+.+.+|||++++.. +.+|.|+-++.+||+.|..|+.-+..+.++...--. -..++|+..|+.+-.+ =-|+ .
T Consensus 47 ~vQKKTFTKWvNShL~rv-~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLke-qkVhLE 124 (2473)
T KOG0517|consen 47 AVQKKTFTKWVNSHLARV-SCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKE-QKVHLE 124 (2473)
T ss_pred HHHHHhHHHHHHHHHHHh-cchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHh-cccccc
Confidence 446889999999999766 789999999999999999999998888775433211 2458999999998876 2343 3
Q ss_pred CCCcccccCCCCCChhhHHHHHHHHHHHhc--------------------------------------------------
Q psy4004 218 MLDPEDLINTPKPDERAIMTYVSCYYHAFQ-------------------------------------------------- 247 (319)
Q Consensus 218 ll~~eD~~~~~~pDe~si~~yls~l~~~f~-------------------------------------------------- 247 (319)
.+-++||++++ ++.++..+..+.-.|.
T Consensus 125 niGshDIVDGN---~rL~LGLIWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~nFTtSWRdGLaF 201 (2473)
T KOG0517|consen 125 NIGSHDIVDGN---HRLILGLIWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNITNFTTSWRDGLAF 201 (2473)
T ss_pred cCCcccccCCc---chhhHHHHHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccccCccchhcchhH
Confidence 58899999753 5666655555443332
Q ss_pred -------------------------------ccchhhhh-hhc--cccCCCCCcchhhhhcccccccccccchhhHHHHH
Q psy4004 248 -------------------------------GAQQVFHS-RVQ--HMTNTAMPDERAIMTYVSSYYHCFSGAQKAETAAN 293 (319)
Q Consensus 248 -------------------------------~~~~~~~~-~~~--~~~n~~~~de~~i~~yv~~~~~~~~~~~~~~~~~~ 293 (319)
-+++.... .+. .=++.+.|||++|+|||++||| ++.|...-..
T Consensus 202 NALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV~v~~PDEKSIITYV~~YYH---yFsKmK~~~v 278 (2473)
T KOG0517|consen 202 NALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDVNVEQPDEKSIITYVVTYYH---YFSKMKQLAV 278 (2473)
T ss_pred HHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhcCccCCCcchHHHHHHHHHH---HHHHHHHHHh
Confidence 00110000 001 1236666999999999999999 9999888888
Q ss_pred HHHHHHHHHHH
Q psy4004 294 RICKVLKVNQE 304 (319)
Q Consensus 294 r~~~~~~~~~~ 304 (319)
--.+|.|++-.
T Consensus 279 ~gKRIgkVl~~ 289 (2473)
T KOG0517|consen 279 EGKRIGKVLDQ 289 (2473)
T ss_pred hhhHHHHHHHH
Confidence 88889888763
No 20
>KOG0516|consensus
Probab=98.13 E-value=6.5e-07 Score=97.30 Aligned_cols=110 Identities=32% Similarity=0.479 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCC---C-CCCCchhhHhhhHHHHHHHHHhCCc
Q psy4004 27 AKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPK---P-DRGKMRFHKIANVNKALDFIASKGV 102 (319)
Q Consensus 27 ~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~---~-~~~~~r~~~ieNv~~aL~~lk~~gv 102 (319)
..+|+++|+.|+|.++.+....|++++++|.+ ...+.+++...+...+. + .....+++.++|+..++++++...+
T Consensus 72 ~~~~k~~f~~~~~~~l~~~~~~ve~~~~~l~~-~~~i~~l~~~e~~~~~~~~~~~~~~~~~~~~l~n~q~~l~~~k~~~~ 150 (1047)
T KOG0516|consen 72 DLVQKKLFPDWLAKELEKVMKHVEDLYEDLRD-LNSISLLEVEELLVAVRKQEPEQDRQERLHDLENVQAALTALKEDLA 150 (1047)
T ss_pred HHHHHhccchhhHHHHHHhccchhHHhhhhhh-hhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhHHHHHhhhccchHHHH
Confidence 68899999999999999998899999999985 45555555544443322 1 2456678999999999999999999
Q ss_pred eeee--cCchhhhccchhhhhhHHHHHHHHhhhcccc
Q psy4004 103 KLVS--IGAEEIVDGNLKMTLGMIWTIILRFAIQDIS 137 (319)
Q Consensus 103 ~l~~--i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~ 137 (319)
.+.+ +..++|..|+++.+|+++|.++++||..+..
T Consensus 151 el~~~~~~~~~~~~~~~~~~l~~~~ei~l~~Q~~~ll 187 (1047)
T KOG0516|consen 151 ELVNFLIRDAEIKLGNPELGLGLIWEIILHFQYVKLL 187 (1047)
T ss_pred HHHHhhcccchhhccchhhhhhhHHHHHHHHHHHHhh
Confidence 9988 9999999999999999999999999996543
No 21
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.97 E-value=6e-06 Score=63.04 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=63.1
Q ss_pred HHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC----CCCCchhhHhhhHHHHHHHHHh-CCceeeecCchh
Q psy4004 37 WCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP----DRGKMRFHKIANVNKALDFIAS-KGVKLVSIGAEE 111 (319)
Q Consensus 37 WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~----~~~~~r~~~ieNv~~aL~~lk~-~gv~l~~i~~~d 111 (319)
|.|..-.-....|.||..||+||+.||.|+....++.++.. ....+....+.|+....+|..+ .|.+.....+||
T Consensus 1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~ed 80 (85)
T PF11971_consen 1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPED 80 (85)
T ss_pred CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHH
Confidence 44444444567899999999999999999999999998763 2445678999999999999887 578777778998
Q ss_pred hhc
Q psy4004 112 IVD 114 (319)
Q Consensus 112 Ivd 114 (319)
+..
T Consensus 81 l~~ 83 (85)
T PF11971_consen 81 LLY 83 (85)
T ss_pred Hhc
Confidence 864
No 22
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=97.85 E-value=4.8e-05 Score=63.00 Aligned_cols=102 Identities=13% Similarity=0.218 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHhCCcee-ee
Q psy4004 28 KSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKL-VS 106 (319)
Q Consensus 28 ~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~~gv~l-~~ 106 (319)
..|.+..+-||...|.+.-.+-.||.+-|+||++||+++...++..+.. +..++++-.++|+...++++++.+|+- .-
T Consensus 12 ~~~~kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~y-KeSkmpFVQmenIs~Fin~~~k~~vpe~el 90 (178)
T COG5199 12 DKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDIKY-KESKMPFVQMENISSFINGLKKLRVPEYEL 90 (178)
T ss_pred HHHHHHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCccccee-cccCCceeeHHHHHHHHHHHHHhCCCHHHH
Confidence 3466788999999887654456899999999999999999888888754 677899999999999999999988752 11
Q ss_pred cCchhhhcc-chhhhhhHHHHHHHH
Q psy4004 107 IGAEEIVDG-NLKMTLGMIWTIILR 130 (319)
Q Consensus 107 i~~~dIvdg-n~k~iLgLiW~li~~ 130 (319)
..-.|+.+. |...++.-+.++-++
T Consensus 91 FQT~DLFE~kd~~qV~~~l~slSRy 115 (178)
T COG5199 91 FQTNDLFEAKDLRQVVICLYSLSRY 115 (178)
T ss_pred HHhhhHHhhcCHHHHHHHHHHHHHH
Confidence 344566664 566677667766544
No 23
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=97.48 E-value=4.2e-05 Score=65.25 Aligned_cols=95 Identities=29% Similarity=0.410 Sum_probs=57.1
Q ss_pred HHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCCh----hhhHHHH-HHHHHHhCCCCCCCCc
Q psy4004 147 LLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNP----LQNLNTA-FDVAEKYLDIPRMLDP 221 (319)
Q Consensus 147 LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~----~~n~~~a-~~~a~~~lgip~ll~~ 221 (319)
|++|++..-- .+.+.|+..+|+||..++.|+++|.|..+|+..+.+... ..|.+.- ..+..+ +|++ ++.
T Consensus 1 l~~WL~~l~l---s~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~k-l~~~--l~~ 74 (158)
T PF06294_consen 1 LLKWLQSLDL---SRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKK-LGIK--LDK 74 (158)
T ss_dssp HHHHHHHS-----S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGG-GT------H
T ss_pred ChHHHhcCCC---CCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHH-cCCC--CCH
Confidence 6799998211 356788889999999999999999999999988876543 5666665 555554 8987 777
Q ss_pred ccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 222 EDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 222 eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
+++-+.-....-.+...|..+|..+.
T Consensus 75 ~~i~~i~~~~~Gaae~lL~~L~~~l~ 100 (158)
T PF06294_consen 75 EDIEGIINCKPGAAESLLYQLYTKLT 100 (158)
T ss_dssp HHHHHHHTT-TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 75433223345566777778888885
No 24
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=97.26 E-value=0.0007 Score=57.77 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=70.2
Q ss_pred HHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCC--CCCCCchhhHhhhHHHH-HHHHHhCCceeeecCchh
Q psy4004 35 TAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPK--PDRGKMRFHKIANVNKA-LDFIASKGVKLVSIGAEE 111 (319)
Q Consensus 35 ~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~--~~~~~~r~~~ieNv~~a-L~~lk~~gv~l~~i~~~d 111 (319)
.+|+++ | .....+.++..||.||+.+.+++....++.+.- +..+.+...++.|-... ..+++..|+++..-..++
T Consensus 2 ~~WL~~-l-~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~l~~~~i~~ 79 (158)
T PF06294_consen 2 LKWLQS-L-DLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIKLDKEDIEG 79 (158)
T ss_dssp HHHHHH-S---S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT----HHHHHH
T ss_pred hHHHhc-C-CCCCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 589999 2 223468899999999999999999999987643 35677888999999988 899999999987777789
Q ss_pred hhccchhhhhhHHHHHHHHhhh
Q psy4004 112 IVDGNLKMTLGMIWTIILRFAI 133 (319)
Q Consensus 112 Ivdgn~k~iLgLiW~li~~f~i 133 (319)
|+.|.+..+-.|+..|+..++-
T Consensus 80 i~~~~~Gaae~lL~~L~~~l~~ 101 (158)
T PF06294_consen 80 IINCKPGAAESLLYQLYTKLTK 101 (158)
T ss_dssp HHTT-TTTTHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999887743
No 25
>KOG0532|consensus
Probab=95.35 E-value=0.012 Score=59.12 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=55.1
Q ss_pred cchHHHhhhHHHHHHHHHHhcCCCCCC-----CCCC-CchhhHhhhHHHHHHHHHhCCceeee-cCchhhhccchh
Q psy4004 50 ENIEEDFRNGLKLMLLLEVISGETLPK-----PDRG-KMRFHKIANVNKALDFIASKGVKLVS-IGAEEIVDGNLK 118 (319)
Q Consensus 50 ~dl~~dl~DGv~L~~Lle~l~~~~~~~-----~~~~-~~r~~~ieNv~~aL~~lk~~gv~l~~-i~~~dIvdgn~k 118 (319)
.||...|.|||+||+|++.+-+..++- |.-+ .+...+--||.-.|+++++.||+-.. +++.||+.+...
T Consensus 595 ~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVpEa~lCS~~Dilq~~~r 670 (722)
T KOG0532|consen 595 EDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVPEADLCSPMDILQKIER 670 (722)
T ss_pred hhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCChHhhcCHHHhhhhhcc
Confidence 589999999999999999999977643 3222 34567888999999999999998433 688999988533
No 26
>KOG2046|consensus
Probab=95.09 E-value=0.085 Score=46.08 Aligned_cols=100 Identities=17% Similarity=0.306 Sum_probs=66.1
Q ss_pred hhhhHHHHHHHhhhCCCCCcc-cccCCCCCcchHHHHHHHHhhCCCccccC--CCCCCChhhhHHHHHHHHHHhCCCCC-
Q psy4004 142 TAKEGLLLWCQRKTAPYKNVN-VQNFHLSFKDGLAFCALIHRHRPELIDYH--KLSKDNPLQNLNTAFDVAEKYLDIPR- 217 (319)
Q Consensus 142 ~~k~~LL~W~q~~~~~~~~v~-V~nfs~sw~DG~al~aLi~~~~P~li~~~--~l~~~~~~~n~~~a~~~a~~~lgip~- 217 (319)
.....|+.|+...... +.+ -.||...+.||..||.|++.+.|...... +...=...+|+..-+..|++ +|++.
T Consensus 25 ~~~~el~~WI~~~~~~--~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi~a~~~-ygv~~~ 101 (193)
T KOG2046|consen 25 ELEKELREWIENVVLT--ELPARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQMENISNFIKAAKK-YGVPEV 101 (193)
T ss_pred HHHHHHHHHHHHhhcc--CCCcccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHHHHHHHHHHHHHh-cCCChh
Confidence 3456799999874211 222 47899999999999999999999554333 22222347888887776665 99986
Q ss_pred -CCCcccccCCCCCChhhHHHHHHHHHHHh
Q psy4004 218 -MLDPEDLINTPKPDERAIMTYVSCYYHAF 246 (319)
Q Consensus 218 -ll~~eD~~~~~~pDe~si~~yls~l~~~f 246 (319)
+...-|+-+ .-|.-.+..-+..|=.+.
T Consensus 102 d~FqtvDLfE--~kd~~~V~vtL~aLa~~a 129 (193)
T KOG2046|consen 102 DLFQTVDLFE--GKDMAQVQVTLLALARKA 129 (193)
T ss_pred hccccccccc--CCCHHHHHHHHHHHHHHH
Confidence 566677654 345555555555554443
No 27
>KOG2996|consensus
Probab=94.56 E-value=0.038 Score=55.37 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=54.5
Q ss_pred CCCccchHHHhhhHHHHHHHHHHhcCCCCCCC----CCCCchhhHhhhHHHHHHHHHh-CCceee-ecCchhhhcc
Q psy4004 46 GTAIENIEEDFRNGLKLMLLLEVISGETLPKP----DRGKMRFHKIANVNKALDFIAS-KGVKLV-SIGAEEIVDG 115 (319)
Q Consensus 46 ~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~----~~~~~r~~~ieNv~~aL~~lk~-~gv~l~-~i~~~dIvdg 115 (319)
+..|-||...|+|||.||+|++-|.+..+... ....+.+-++.|++..+.++.. .|..-. -..|.|+.|-
T Consensus 27 ~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~~Fglr~seLF~afDLfdv 102 (865)
T KOG2996|consen 27 SAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEAFDLFDV 102 (865)
T ss_pred cchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHHHhCCchhhhcchhhhhhh
Confidence 34577999999999999999999999887542 2345678999999999999987 455422 2578888774
No 28
>KOG2996|consensus
Probab=92.68 E-value=0.096 Score=52.64 Aligned_cols=83 Identities=19% Similarity=0.352 Sum_probs=64.7
Q ss_pred CcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCC------ChhhhHHHHHHHHHHhCCCCC--CCCcccccCCCCCC
Q psy4004 160 NVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD------NPLQNLNTAFDVAEKYLDIPR--MLDPEDLINTPKPD 231 (319)
Q Consensus 160 ~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~------~~~~n~~~a~~~a~~~lgip~--ll~~eD~~~~~~pD 231 (319)
+-.|-+|..-.+||+.||.|+|.+.|..||...+.-. =.+.|++.-+.+..+.+|... |.+|.|+-++. |
T Consensus 27 ~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~~Fglr~seLF~afDLfdv~--d 104 (865)
T KOG2996|consen 27 SAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEAFDLFDVR--D 104 (865)
T ss_pred cchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHHHhCCchhhhcchhhhhhhh--h
Confidence 4467888899999999999999999999998777432 227899998888888899965 89999987653 4
Q ss_pred hhhHHHHHHHHHH
Q psy4004 232 ERAIMTYVSCYYH 244 (319)
Q Consensus 232 e~si~~yls~l~~ 244 (319)
-.-++--||.|-+
T Consensus 105 FgKVi~tlS~LS~ 117 (865)
T KOG2996|consen 105 FGKVIKTLSRLSH 117 (865)
T ss_pred HHHHHHHHHHhcc
Confidence 4555555665543
No 29
>KOG2128|consensus
Probab=92.30 E-value=0.29 Score=53.74 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=70.0
Q ss_pred HHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCC-C-CCCCchhhHhhhHHHHHHHHHhCCceee-ecCch
Q psy4004 34 FTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPK-P-DRGKMRFHKIANVNKALDFIASKGVKLV-SIGAE 110 (319)
Q Consensus 34 f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~-~-~~~~~r~~~ieNv~~aL~~lk~~gv~l~-~i~~~ 110 (319)
-.+||...|.+.=++-.+|.+.|++||.|++|.+.+.|...-. + ..... +..-.|++.-++++..-|++-. -..-.
T Consensus 47 ~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~-frHtdNi~q~~~~me~iglP~iF~~E~~ 125 (1401)
T KOG2128|consen 47 AKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLH-FRHTDNINQWLRAMESIGLPEIFYPETT 125 (1401)
T ss_pred HHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCce-eecchhHHHHHHHHhhcCCCcccccchh
Confidence 3589999999886667899999999999999999999865432 2 33333 8889999999999999888732 12346
Q ss_pred hhhcc-chhhhhhHHHHHHH
Q psy4004 111 EIVDG-NLKMTLGMIWTIIL 129 (319)
Q Consensus 111 dIvdg-n~k~iLgLiW~li~ 129 (319)
||.+| |.. +.--|.+|..
T Consensus 126 Dvy~~kN~p-~i~cihaLs~ 144 (1401)
T KOG2128|consen 126 DVYEGKNIP-VIYCIHALSL 144 (1401)
T ss_pred hhhcCCCCc-eeeHHHHHHH
Confidence 99999 444 4444444443
No 30
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=87.83 E-value=0.66 Score=48.90 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCC-----C--CCCCchhhHhhhHHHHHHHHHh----
Q psy4004 31 LLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPK-----P--DRGKMRFHKIANVNKALDFIAS---- 99 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~-----~--~~~~~r~~~ieNv~~aL~~lk~---- 99 (319)
...+..|||+. . .+.++.+ +.||.||++|..++..|.|..+.. . ..+....-++.|+...+.-+..
T Consensus 9 ~~~Lv~Wv~tf-~-~~~~~~~-~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~yy~e 85 (713)
T PF05622_consen 9 CDSLVTWVQTF-N-LSAPCSS-YEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKSYYQE 85 (713)
T ss_dssp HHHHHHHHTT-----SS---S-HHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-C-CCCCcCC-HHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999995 2 3334544 579999999999999999987642 1 1122334578898888876664
Q ss_pred -CCceeeecCc---hhhhc-cchhhhhhHHHHHHHHhhhcc
Q psy4004 100 -KGVKLVSIGA---EEIVD-GNLKMTLGMIWTIILRFAIQD 135 (319)
Q Consensus 100 -~gv~l~~i~~---~dIvd-gn~k~iLgLiW~li~~f~i~~ 135 (319)
.|-.++.... ..|.. ++..-+ +-+-.|++-..++.
T Consensus 86 ~L~~~i~~~~~Pd~~~Iae~~d~~El-~kLL~LlLgcAV~c 125 (713)
T PF05622_consen 86 ELGQQISEMPLPDLQAIAENSDPEEL-KKLLQLLLGCAVQC 125 (713)
T ss_dssp TT-----TTT---HHHHHTT--HHHH-HHHHHHHHHHTTSS
T ss_pred HcCCCcCcCCCCCHHHHHhCCCHHHH-HHHHHHHHHHhhcC
Confidence 3443332222 23443 444443 34455666666654
No 31
>KOG0532|consensus
Probab=87.62 E-value=0.28 Score=49.73 Aligned_cols=62 Identities=19% Similarity=0.491 Sum_probs=48.3
Q ss_pred ccCCCCCcchHHHHHHHHhhCCCccccCCC--------CCCChhhhHHHHHHHHHHhCCCCC--CCCcccccC
Q psy4004 164 QNFHLSFKDGLAFCALIHRHRPELIDYHKL--------SKDNPLQNLNTAFDVAEKYLDIPR--MLDPEDLIN 226 (319)
Q Consensus 164 ~nfs~sw~DG~al~aLi~~~~P~li~~~~l--------~~~~~~~n~~~a~~~a~~~lgip~--ll~~eD~~~ 226 (319)
.||..-..||.+||.|++++||-.+..=.+ .......|++..+++.++ +|+|- +-+|.|++.
T Consensus 595 ~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRk-iGVpEa~lCS~~Dilq 666 (722)
T KOG0532|consen 595 EDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRK-IGVPEADLCSPMDILQ 666 (722)
T ss_pred hhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHH-cCCChHhhcCHHHhhh
Confidence 688999999999999999999965533222 223457899998998886 99995 678888763
No 32
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=87.40 E-value=1.1 Score=47.22 Aligned_cols=93 Identities=17% Similarity=0.279 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHH-------HHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC-CCCCchhhHhhhHHHHH
Q psy4004 23 QAVHAKSHLLTF-------TAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVNKAL 94 (319)
Q Consensus 23 ~~~~~~~q~~~f-------~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~-~~~~~r~~~ieNv~~aL 94 (319)
+.+....|.-.| ..||...+...-. -..+.+.|++||.|..|.+.+.+..+... ......+..-.|+|..|
T Consensus 31 ak~r~~lraYeyLCRv~EaK~WIee~~~~~l~-~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN~Fl 109 (1054)
T COG5261 31 AKNRSALRAYEYLCRVSEAKIWIEEVIEEALP-ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNINAFL 109 (1054)
T ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHhccCCc-hhhHHHHHhccchHHHHHHHhCCCceeEeeecccceeeccccHHHHH
Confidence 445555554433 4799998876543 55678999999999999999999877542 23566788899999999
Q ss_pred HHHHhCCcee-eecCchhhhccc
Q psy4004 95 DFIASKGVKL-VSIGAEEIVDGN 116 (319)
Q Consensus 95 ~~lk~~gv~l-~~i~~~dIvdgn 116 (319)
+++..-|++- --..-.|+.+|.
T Consensus 110 d~i~~vGlPe~FhFEl~DlYekK 132 (1054)
T COG5261 110 DLIEHVGLPESFHFELQDLYEKK 132 (1054)
T ss_pred hHhhhcCCcceeeeehHhhhccC
Confidence 9999988873 236677999873
No 33
>KOG3000|consensus
Probab=81.69 E-value=4 Score=38.28 Aligned_cols=97 Identities=18% Similarity=0.358 Sum_probs=65.1
Q ss_pred hhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC-----CCChhhhHHHHHHHHHHhCCCCC
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS-----KDNPLQNLNTAFDVAEKYLDIPR 217 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~-----~~~~~~n~~~a~~~a~~~lgip~ 217 (319)
....+|.|++..+... ..+|. ....|-|.|.|.+...|..|+...+. .-....|.+.--+.. +.+||.+
T Consensus 16 sR~E~laW~N~~l~~n-~~kIE----e~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f-~klgi~k 89 (295)
T KOG3000|consen 16 SRLEILAWINDLLQLN-LTKIE----ELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCF-NKLGIDK 89 (295)
T ss_pred chHHHHHHHHhhhhcc-hhhhh----hhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHH-HhcCCcc
Confidence 3457899999876421 22333 44569999999999999888766663 234456666544444 4599999
Q ss_pred CCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 218 MLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 218 ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
.+++++++-++..|-.-.+-|+--||+.
T Consensus 90 ~v~vdkLvKg~~qDNlEF~qWfkkffd~ 117 (295)
T KOG3000|consen 90 VVDVDKLVKGPFQDNLEFLQWFKKFFDA 117 (295)
T ss_pred cccHHHHhcccccchHHHHHHHHHHhhc
Confidence 9999999877666665544444444443
No 34
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=81.48 E-value=3 Score=35.04 Aligned_cols=99 Identities=17% Similarity=0.335 Sum_probs=68.9
Q ss_pred hhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC-CCChhhhHHHHHHHHHHhCCCCC--CC
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS-KDNPLQNLNTAFDVAEKYLDIPR--ML 219 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~-~~~~~~n~~~a~~~a~~~lgip~--ll 219 (319)
+.+..-.|+-..+..- --+--||-+.+.||..||.++..-.|.-|.|.... +--..+|+..-++.+.+ +++|. +.
T Consensus 14 ~~kev~~Wie~~l~~k-~~ppgdll~~lkdGv~lCril~ea~~~~I~yKeSkmpFVQmenIs~Fin~~~k-~~vpe~elF 91 (178)
T COG5199 14 QQKEVTLWIETVLGEK-FEPPGDLLSLLKDGVRLCRILNEASPLDIKYKESKMPFVQMENISSFINGLKK-LRVPEYELF 91 (178)
T ss_pred HHHHHHHHHHHHHHhh-hCCcccHHHHHhcchHHHHHHhhcCcccceecccCCceeeHHHHHHHHHHHHH-hCCCHHHHH
Confidence 4556778987665321 11235788999999999999999999888776542 22336899998998886 89985 56
Q ss_pred CcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 220 DPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 220 ~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
.-.|+-+ .-|..-++..+..|-.|
T Consensus 92 QT~DLFE--~kd~~qV~~~l~slSRy 115 (178)
T COG5199 92 QTNDLFE--AKDLRQVVICLYSLSRY 115 (178)
T ss_pred HhhhHHh--hcCHHHHHHHHHHHHHH
Confidence 6667654 45666666666555444
No 35
>KOG0165|consensus
Probab=44.80 E-value=26 Score=37.06 Aligned_cols=57 Identities=9% Similarity=0.010 Sum_probs=46.9
Q ss_pred CCchhhHhhhHHHHHHHHHhCCceeee-----cCchhhhccchhhhhhHHHHHH-HHhhhccc
Q psy4004 80 GKMRFHKIANVNKALDFIASKGVKLVS-----IGAEEIVDGNLKMTLGMIWTII-LRFAIQDI 136 (319)
Q Consensus 80 ~~~r~~~ieNv~~aL~~lk~~gv~l~~-----i~~~dIvdgn~k~iLgLiW~li-~~f~i~~i 136 (319)
..+|+..+.|+..++++..+.|+.+.. +..+++.+|.+..+..++|.|. .+.+++..
T Consensus 338 rq~r~~N~~~~ai~~q~~~~aGl~Lk~~~e~~~~~~~~~~~~R~~a~~r~~kI~~V~l~L~~~ 400 (1023)
T KOG0165|consen 338 RQTRFLNVRASAIIIQRKWRAGLPLKIAHEHFLMIKRHRAACRIQAHYRGYKIRQVSLRLKSA 400 (1023)
T ss_pred hHhHHhhHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHHHHhhhHhHHHHhccceeEEEehhh
Confidence 567889999999999999999998642 4558999999999999999998 56555543
No 36
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=42.03 E-value=14 Score=39.14 Aligned_cols=94 Identities=17% Similarity=0.345 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCcccc---CCCCC---CC---hhhhHHHHHH----H
Q psy4004 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDY---HKLSK---DN---PLQNLNTAFD----V 208 (319)
Q Consensus 142 ~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~---~~l~~---~~---~~~n~~~a~~----~ 208 (319)
..-..|+.|++..-. .-++.++ .++.||++|..+++.+-|..++- ..+.. ++ ...|++..+. +
T Consensus 7 ~l~~~Lv~Wv~tf~~---~~~~~~~-~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~y 82 (713)
T PF05622_consen 7 ELCDSLVTWVQTFNL---SAPCSSY-EDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKSY 82 (713)
T ss_dssp HHHHHHHHHHTT------SS---SH-HHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCC---CCCcCCH-HHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 345689999986421 2345555 58999999999999999998752 23321 22 2467665544 3
Q ss_pred HHHhCCCCC----CCCcccccCCCCCChhhHHHHHHH
Q psy4004 209 AEKYLDIPR----MLDPEDLINTPKPDERAIMTYVSC 241 (319)
Q Consensus 209 a~~~lgip~----ll~~eD~~~~~~pDe~si~~yls~ 241 (319)
-.+.||-+. +.+...|. ..+|..-+...+..
T Consensus 83 y~e~L~~~i~~~~~Pd~~~Ia--e~~d~~El~kLL~L 117 (713)
T PF05622_consen 83 YQEELGQQISEMPLPDLQAIA--ENSDPEELKKLLQL 117 (713)
T ss_dssp HHTTT-----TTT---HHHHH--TT--HHHHHHHHHH
T ss_pred HHHHcCCCcCcCCCCCHHHHH--hCCCHHHHHHHHHH
Confidence 344455532 12222333 34666555544443
No 37
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=41.88 E-value=28 Score=26.71 Aligned_cols=61 Identities=20% Similarity=0.414 Sum_probs=36.3
Q ss_pred cCCCCCcchHHHHHHHHhhCCCc-cccCCCCCCCh---hhhHHHHHHHHHHhCCCCC--CCCccccc
Q psy4004 165 NFHLSFKDGLAFCALIHRHRPEL-IDYHKLSKDNP---LQNLNTAFDVAEKYLDIPR--MLDPEDLI 225 (319)
Q Consensus 165 nfs~sw~DG~al~aLi~~~~P~l-i~~~~l~~~~~---~~n~~~a~~~a~~~lgip~--ll~~eD~~ 225 (319)
-+-..|+-|..||.|.++..|+. ++.+.....+. ...+-.-+....++||+|. +.+-.|+-
T Consensus 5 ~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~ 71 (89)
T PF06395_consen 5 QLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLY 71 (89)
T ss_pred HHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccc
Confidence 33456889999999999999973 44433222222 1111222233456799984 57777764
No 38
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=37.43 E-value=29 Score=25.74 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=22.3
Q ss_pred hhHHHHHHHhhhCCCCCcccccCCCCC--cchHHHHHHH
Q psy4004 144 KEGLLLWCQRKTAPYKNVNVQNFHLSF--KDGLAFCALI 180 (319)
Q Consensus 144 k~~LL~W~q~~~~~~~~v~V~nfs~sw--~DG~al~aLi 180 (319)
++....|++-.+..| +++-.|+ ..| -||.+||+|=
T Consensus 10 ~~~V~~WL~Wa~~ef-~L~~~~~-~~F~~m~Gk~LC~Ls 46 (75)
T cd08540 10 TDHVRQWLEWAVKEY-GLPDVDV-LLFQNIDGKELCKMT 46 (75)
T ss_pred HHHHHHHHHHHHHHh-CCCCCCc-ccccCCCHHHHHhCC
Confidence 345667777667666 3443444 346 3999999973
No 39
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=32.59 E-value=42 Score=35.97 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=55.0
Q ss_pred HHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCcc----ccCCCCCCChhhhHHHHHHHHHHhCCCCCC--CCc
Q psy4004 148 LLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI----DYHKLSKDNPLQNLNTAFDVAEKYLDIPRM--LDP 221 (319)
Q Consensus 148 L~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li----~~~~l~~~~~~~n~~~a~~~a~~~lgip~l--l~~ 221 (319)
-.|.-..+... .+-.-|..|.|+|+.|+.|..++.||+. +-+.+ .-.+.+|++.-|+..+. .|+|.. .+.
T Consensus 50 K~WIee~~~~~--l~~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~L-QfrHtdNIN~Fld~i~~-vGlPe~FhFEl 125 (1054)
T COG5261 50 KIWIEEVIEEA--LPELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKL-QFRHTDNINAFLDLIEH-VGLPESFHFEL 125 (1054)
T ss_pred HHHHHHHhccC--CchhhHHHHHhccchHHHHHHHhCCCceeEeeecccc-eeeccccHHHHHhHhhh-cCCcceeeeeh
Confidence 46887776422 2234577899999999999999999975 22333 33557899999999985 999976 556
Q ss_pred ccccC
Q psy4004 222 EDLIN 226 (319)
Q Consensus 222 eD~~~ 226 (319)
.|+-+
T Consensus 126 ~DlYe 130 (1054)
T COG5261 126 QDLYE 130 (1054)
T ss_pred Hhhhc
Confidence 67644
No 40
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=32.53 E-value=38 Score=26.13 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=20.6
Q ss_pred hhHHHHHHHhhhCCCCCcccccCCCCC--cchHHHHHH
Q psy4004 144 KEGLLLWCQRKTAPYKNVNVQNFHLSF--KDGLAFCAL 179 (319)
Q Consensus 144 k~~LL~W~q~~~~~~~~v~V~nfs~sw--~DG~al~aL 179 (319)
++....|++-.+..| ++.=.|+ ..| -||.+||.|
T Consensus 22 ~~hV~~WL~Wa~~ef-~L~~vd~-~~F~~m~Gk~LC~L 57 (91)
T cd08541 22 QEHVRQWLEWAIKEY-GLMEIDT-SFFQNMDGKELCKM 57 (91)
T ss_pred HHHHHHHHHHHHHHc-CCCCCCh-hhccCCCHHHHHhC
Confidence 456677777666666 2322222 245 389999997
No 41
>KOG0165|consensus
Probab=30.08 E-value=6.8 Score=41.08 Aligned_cols=81 Identities=19% Similarity=0.116 Sum_probs=62.6
Q ss_pred hHHHhhhHHHHHHHHHHh-cCCCCCCC--CCCCchhhHhhhHHHHHHHHHhCCceeeecCchhhhccchhhhhhHHHHHH
Q psy4004 52 IEEDFRNGLKLMLLLEVI-SGETLPKP--DRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII 128 (319)
Q Consensus 52 l~~dl~DGv~L~~Lle~l-~~~~~~~~--~~~~~r~~~ieNv~~aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li 128 (319)
+.-++.+|+.|..+.|-. .++.+.-. .....+..+|-||...|..+.. |+...++..+-+|.|+...+++..|.++
T Consensus 352 ~q~~~~aGl~Lk~~~e~~~~~~~~~~~~R~~a~~r~~kI~~V~l~L~~~~s-gl~T~~~~~~~~Vg~~~~i~~S~~~~~~ 430 (1023)
T KOG0165|consen 352 IQRKWRAGLPLKIAHEHFLMIKRHRAACRIQAHYRGYKIRQVSLRLKSAAS-GLITQKYIRAREVGKHERIKYSEFKKST 430 (1023)
T ss_pred HhHhhhcCcchHHHHHHHHHHHHHHHHhhhHhHHHHhccceeEEEehhhhc-cccHHHHHHHHhhcccccchhHHHHHHH
Confidence 445889999999988863 34333111 1245678889999999988885 8988899999999999999999999988
Q ss_pred HHhhh
Q psy4004 129 LRFAI 133 (319)
Q Consensus 129 ~~f~i 133 (319)
.-.+.
T Consensus 431 ~~~~a 435 (1023)
T KOG0165|consen 431 VILQA 435 (1023)
T ss_pred HHHHh
Confidence 76543
No 42
>KOG2128|consensus
Probab=29.49 E-value=82 Score=35.60 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=56.5
Q ss_pred HHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCcc----ccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCc
Q psy4004 146 GLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELI----DYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDP 221 (319)
Q Consensus 146 ~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li----~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~ 221 (319)
..-+|.-..+..- -.+-++|-.+.|+|+.|+.|...|.||.- .-..+. -.+-+|+..-+.+.+. .|+|.+.-|
T Consensus 46 E~k~W~e~cl~ed-L~pttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~-frHtdNi~q~~~~me~-iglP~iF~~ 122 (1401)
T KOG2128|consen 46 EAKRWIEECLGED-LPPTTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLH-FRHTDNINQWLRAMES-IGLPEIFYP 122 (1401)
T ss_pred HHHHHHHHHhccc-CCCchHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCce-eecchhHHHHHHHHhh-cCCCccccc
Confidence 3458987766432 33557777889999999999999999763 222222 3456889988888885 999998877
Q ss_pred c--cccC
Q psy4004 222 E--DLIN 226 (319)
Q Consensus 222 e--D~~~ 226 (319)
| |+-+
T Consensus 123 E~~Dvy~ 129 (1401)
T KOG2128|consen 123 ETTDVYE 129 (1401)
T ss_pred chhhhhc
Confidence 7 5543
No 43
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=27.59 E-value=50 Score=24.67 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=24.1
Q ss_pred hhhHHHHHHHhhhC--CC--CCcccccCCCCCcchHHHHHH
Q psy4004 143 AKEGLLLWCQRKTA--PY--KNVNVQNFHLSFKDGLAFCAL 179 (319)
Q Consensus 143 ~k~~LL~W~q~~~~--~~--~~v~V~nfs~sw~DG~al~aL 179 (319)
.|...+.|++..+. .| .++++.+| --||.+||.+
T Consensus 14 tk~qVleWL~~~~e~n~~dl~~v~f~~F---~MnG~~LC~l 51 (78)
T cd08537 14 TKTQVLEWISYHVEKNKYDASSIDFSRC---DMDGATLCNC 51 (78)
T ss_pred cHHHHHHHHHHHHHhccCCcccCCHHHh---CCchHHHHcc
Confidence 46678999998883 34 24444444 6799999986
No 44
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=26.01 E-value=1.6e+02 Score=27.05 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=42.6
Q ss_pred ccchHHHhhhHHHHHHHHHHhcC-CCCCC-----C---CCCCchhhHhhhHHHHHHHHHhCCcee--eecCchh
Q psy4004 49 IENIEEDFRNGLKLMLLLEVISG-ETLPK-----P---DRGKMRFHKIANVNKALDFIASKGVKL--VSIGAEE 111 (319)
Q Consensus 49 v~dl~~dl~DGv~L~~Lle~l~~-~~~~~-----~---~~~~~r~~~ieNv~~aL~~lk~~gv~l--~~i~~~d 111 (319)
+.+-..++++||-+...--.--| ..+.. | ....++..-++|+..|-+.+...|+.+ ..|+..|
T Consensus 76 lp~r~~~fr~~v~~a~~ya~aLg~~~vh~mag~~p~~~~~~~~~~t~venLr~aAd~l~~~gi~~liEplN~~d 149 (260)
T COG3622 76 LPGREEEFRLGVALAIEYATALGCKQVHCLAGIPPEGVDTEAMWATFVENLRYAADLLAAEGIRLLIEPLNLRD 149 (260)
T ss_pred CCCchHHHHhHHHHHHHHHHHhCCCceeeeecCCCCCccHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCCCC
Confidence 55778999999988766554444 44321 1 123345568999999999999999874 4555543
No 45
>KOG3000|consensus
Probab=25.43 E-value=1.8e+02 Score=27.34 Aligned_cols=90 Identities=19% Similarity=0.315 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC---CCCCchhhHhhhHHHHHHHHHhCCceeee
Q psy4004 30 HLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP---DRGKMRFHKIANVNKALDFIASKGVKLVS 106 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~~~~r~~~ieNv~~aL~~lk~~gv~l~~ 106 (319)
-...+..|+|..|.-.-.. .++++.|-..|.|..-+.+..++-+ -..+.-...+.|....=.-.++.|+..+
T Consensus 16 sR~E~laW~N~~l~~n~~k----IEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi~k~- 90 (295)
T KOG3000|consen 16 SRLEILAWINDLLQLNLTK----IEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKLGIDKV- 90 (295)
T ss_pred chHHHHHHHHhhhhcchhh----hhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHHHhcCCccc-
Confidence 3456889999987632223 3567889999999999999887653 2333334455555544444556677654
Q ss_pred cCchhhhccchhhhhhHH
Q psy4004 107 IGAEEIVDGNLKMTLGMI 124 (319)
Q Consensus 107 i~~~dIvdgn~k~iLgLi 124 (319)
|..++++.|..--.|-++
T Consensus 91 v~vdkLvKg~~qDNlEF~ 108 (295)
T KOG3000|consen 91 VDVDKLVKGPFQDNLEFL 108 (295)
T ss_pred ccHHHHhcccccchHHHH
Confidence 778888888766666543
No 46
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=25.13 E-value=42 Score=24.82 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=23.5
Q ss_pred hhhHHHHHHHhhhCCCCCcccc--cCCCCCcchHHHHHH
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQ--NFHLSFKDGLAFCAL 179 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~--nfs~sw~DG~al~aL 179 (319)
.+...+.|++..+..+ .++.. +|...--||.+||.+
T Consensus 9 tk~~V~~WL~~~~~~~-~~~~~~i~~~~F~MnG~~LC~m 46 (74)
T cd08539 9 TKYQVWEWLQHLLDTN-QLDASCIPFQEFDINGEHLCSM 46 (74)
T ss_pred CHHHHHHHHHHHHHHc-CCCcccccHHHcCCChHHHHcc
Confidence 3567888998875544 23333 444446799999986
No 47
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=24.06 E-value=69 Score=23.10 Aligned_cols=33 Identities=27% Similarity=0.531 Sum_probs=21.7
Q ss_pred hhHHHHHHHhhhCCC--C--CcccccCCCCCcchHHHHHH
Q psy4004 144 KEGLLLWCQRKTAPY--K--NVNVQNFHLSFKDGLAFCAL 179 (319)
Q Consensus 144 k~~LL~W~q~~~~~~--~--~v~V~nfs~sw~DG~al~aL 179 (319)
++..+.|++..+..| + ++.+.+| =-||.+||.+
T Consensus 7 ~~~V~~Wl~w~~~e~~l~~~~i~~~~F---~m~Gk~LC~m 43 (68)
T cd08757 7 KNDVLEWLQFVAEQNKLDAECISFQKF---NIDGQTLCSM 43 (68)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCcccc---CCCHHHHHcC
Confidence 456777887666543 1 2455566 4689999986
No 48
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=23.99 E-value=70 Score=23.17 Aligned_cols=34 Identities=21% Similarity=0.556 Sum_probs=21.9
Q ss_pred hhHHHHHHHhhhCCC--CCcccccCCCCCcchHHHHHHH
Q psy4004 144 KEGLLLWCQRKTAPY--KNVNVQNFHLSFKDGLAFCALI 180 (319)
Q Consensus 144 k~~LL~W~q~~~~~~--~~v~V~nfs~sw~DG~al~aLi 180 (319)
++....|++-.+..| +.+.+.+| =-||.+||.+=
T Consensus 8 ~~~V~~WL~wa~~ef~L~~i~~~~F---~mnGk~LC~ls 43 (68)
T cd08535 8 RDDVLQWLRWAENEFSLPPIDSNTF---EMNGKALCLLT 43 (68)
T ss_pred HHHHHHHHHHHHHhcCCCCCChhcc---CCCHHHHhcCC
Confidence 345666766666555 24455666 36999999963
No 49
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=23.72 E-value=74 Score=22.89 Aligned_cols=32 Identities=25% Similarity=0.587 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhCCC--CCcccccCCCCCcchHHHHHH
Q psy4004 145 EGLLLWCQRKTAPY--KNVNVQNFHLSFKDGLAFCAL 179 (319)
Q Consensus 145 ~~LL~W~q~~~~~~--~~v~V~nfs~sw~DG~al~aL 179 (319)
+....|++..+..| +.+.+.+|. -||.+||.|
T Consensus 8 ~~V~~WL~w~~~ef~L~~~~~~~F~---m~Gk~LC~l 41 (66)
T cd08536 8 EHVRTWLRWVSARYQLEVVDLDKFL---MNGKGLCLM 41 (66)
T ss_pred HHHHHHHHHHHHHhCCCCCCccccC---CCHHHHHcC
Confidence 45667777666655 234556663 599999996
No 50
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=23.61 E-value=74 Score=22.71 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=22.0
Q ss_pred hhHHHHHHHhhhCCC--CCcccccCCCCCcchHHHHHH
Q psy4004 144 KEGLLLWCQRKTAPY--KNVNVQNFHLSFKDGLAFCAL 179 (319)
Q Consensus 144 k~~LL~W~q~~~~~~--~~v~V~nfs~sw~DG~al~aL 179 (319)
++....|++.....| +.+++.+| =-||..||.+
T Consensus 7 ~~~V~~Wl~w~~~~f~L~~~~~~~F---~m~G~~Lc~l 41 (66)
T cd08203 7 KEHVLQWLEWAVKEFSLPPIDFSKF---NMNGKELCLL 41 (66)
T ss_pred HHHHHHHHHHHHHhcCCCCCChhhc---CCCHHHHHhC
Confidence 356677887777655 23445555 4689999986
No 51
>PF05858 BIV_Env: Bovine immunodeficiency virus surface protein (SU); InterPro: IPR008411 (Bovine immunodeficiency virus) (BIV), like the human immunodeficiency virus, is a lentivirus. It shows a great deal of genomic diversity, mostly in the viral envelope gene []. This property of the BIV group of viruses may play an important role in the pathobiology of the virus, particularly the conserved (C) 2, hypervariable (V) 1, V2 and C3 regions []. The surface protein (SU) attaches the virus to the host cell by binding to its receptor. This interaction triggers the refolding of the transmembrane protein (TM) and is thought to activate its fusogenic potential by unmasking its fusion peptide. Fusion occurs at the host cell plasma membrane. The transmembrane protein (TM) acts as a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes. Membranes fusion leads to delivery of the nucleocapsid into the cytoplasm. ; GO: 0016021 integral to membrane, 0030120 vesicle coat
Probab=23.60 E-value=50 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=28.9
Q ss_pred cccccCCchhhhHHHHHhHHHHHHH---HHHHHHHHHHh
Q psy4004 5 ISFRPQRSASVGRIITFLQAVHAKS---HLLTFTAWCNS 40 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~---q~~~f~~WiN~ 40 (319)
-.+||++++.....+.++|++-++. -++++++|||.
T Consensus 7 r~ErgE~~G~s~elr~LlQe~i~~grLT~rEaL~~WINN 45 (548)
T PF05858_consen 7 RVERGEGEGRSEELRDLLQEDIDKGRLTAREALTRWINN 45 (548)
T ss_pred ccccccccCCcchHHHHHHHHhhcCcccHHHHHHhhhhC
Confidence 3589999999999888888766553 37899999986
No 52
>PHA00727 hypothetical protein
Probab=23.04 E-value=26 Score=30.85 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHH
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLL 66 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Ll 66 (319)
...+..+++.+.-.+|||+.|-....-|.-| ..=+||.-|.-|-
T Consensus 73 ~kkekvdv~vkv~kkwinsrlftaehyvaml-qqs~dglqllflr 116 (278)
T PHA00727 73 FKKEKVDVRVKVVKKWINSRLFTAEHYVAML-QQSKDGLQLLFLR 116 (278)
T ss_pred hhhhhcceeeehhHHHHhhhhccHHHHHHHH-HhcccchhhhhhH
Confidence 3445555666777899999987655445433 4558998886543
No 53
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=20.76 E-value=2.6e+02 Score=24.58 Aligned_cols=75 Identities=17% Similarity=0.365 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHH-----HHHHHHhcCCCCCCC----CCCCchhhHhhhHHHHHHHHH
Q psy4004 28 KSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKL-----MLLLEVISGETLPKP----DRGKMRFHKIANVNKALDFIA 98 (319)
Q Consensus 28 ~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L-----~~Lle~l~~~~~~~~----~~~~~r~~~ieNv~~aL~~lk 98 (319)
..|.+-.+.| +..+..+.+|+..|+.. .+|+-.+.+..+.+. +.+..|+. ......+++
T Consensus 72 ~rQv~~l~~~--------~~~~~~v~~digSgln~~Rk~~~kll~li~~~~V~rVvV~ykDRL~RFG----fe~le~~~~ 139 (193)
T COG2452 72 ERQINYLTNY--------GYKVDEVLTDIGSGLNMQRKGLLKLLKLVEGNSVRRVVVSYKDRLNRFG----FELVEAVCK 139 (193)
T ss_pred HHHHHHHHHh--------ccccceeeehhhhhhhhhhhhHHHHHHHHcCCceeEEEEEccchHhHHh----HHHHHHHHH
Confidence 3455556676 45566666666666543 678888888776542 34445555 566667888
Q ss_pred hCCceeeecCchhhhc
Q psy4004 99 SKGVKLVSIGAEEIVD 114 (319)
Q Consensus 99 ~~gv~l~~i~~~dIvd 114 (319)
..|+.++-++.++.-+
T Consensus 140 a~~~eivvv~~~e~~~ 155 (193)
T COG2452 140 AHNVEIVVVNQEDKDS 155 (193)
T ss_pred hcCcEEEEecCCCCCH
Confidence 8999987777665543
No 54
>KOG0607|consensus
Probab=20.55 E-value=35 Score=32.79 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=45.0
Q ss_pred CccchHHHhhhHHHHHHHHHHhcCCCCCC------CCCCCchhhHhhhHHHHHHHHHhCCceeeecCchhhhccc
Q psy4004 48 AIENIEEDFRNGLKLMLLLEVISGETLPK------PDRGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGN 116 (319)
Q Consensus 48 ~v~dl~~dl~DGv~L~~Lle~l~~~~~~~------~~~~~~r~~~ieNv~~aL~~lk~~gv~l~~i~~~dIvdgn 116 (319)
.|-.|.+-|.|-..+.-.+|++.|+++-. .-...-..+-+.-+..||+|+..+||--..+.||+|.=-+
T Consensus 137 nilqLiefFEdd~~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~ 211 (463)
T KOG0607|consen 137 NILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCES 211 (463)
T ss_pred cHHHHHHHhcccceEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecC
Confidence 45566666666666666667777766521 1112223455778899999999999877777777775443
Done!