Query psy4004
Match_columns 319
No_of_seqs 233 out of 1464
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 22:56:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wku_A Alpha-actinin 3; calpon 100.0 3.4E-65 1.2E-69 466.1 19.2 238 12-250 11-248 (254)
2 4b7l_A Filamin-B; structural p 100.0 7E-63 2.4E-67 468.9 17.2 225 23-251 11-246 (347)
3 3f7p_A Plectin-1; plakin, hemi 100.0 9.9E-63 3.4E-67 456.7 16.5 225 21-247 65-293 (296)
4 3hoc_A Filamin-A; calponin hom 100.0 1.3E-61 4.5E-66 444.8 16.1 221 21-245 39-270 (272)
5 1sh5_A Plectin 1, PLTN, PCN; a 100.0 2.7E-60 9.2E-65 431.8 16.8 226 22-249 5-239 (245)
6 2wa7_A Filamin-B; disease muta 100.0 1E-59 3.4E-64 428.0 18.5 220 22-245 13-243 (245)
7 1sjj_A Actinin; 3-helix bundle 100.0 6.4E-61 2.2E-65 503.9 7.4 259 23-317 2-260 (863)
8 1dxx_A Dystrophin; structural 100.0 2E-59 6.8E-64 426.3 15.0 225 22-248 9-241 (246)
9 1aoa_A T-fimbrin; actin-bindin 100.0 5.9E-53 2E-57 389.6 17.1 220 21-244 16-275 (275)
10 1pxy_A Fimbrin-like protein; c 100.0 4.7E-51 1.6E-55 406.2 16.7 219 22-247 269-504 (506)
11 1rt8_A Fimbrin; filamentous ac 100.0 5.6E-49 1.9E-53 391.8 18.2 225 23-252 6-268 (513)
12 1rt8_A Fimbrin; filamentous ac 100.0 8.8E-49 3E-53 390.4 18.0 215 22-244 279-512 (513)
13 1pxy_A Fimbrin-like protein; c 100.0 3.1E-46 1.1E-50 371.5 16.9 223 25-252 3-259 (506)
14 1bkr_A Spectrin beta chain; fi 100.0 3.4E-36 1.2E-40 240.0 9.7 106 141-247 2-107 (109)
15 1wyq_A Spectrin beta chain, br 100.0 2.4E-36 8.1E-41 247.1 6.4 110 140-250 5-114 (127)
16 2d88_A Protein mical-3; all al 100.0 6.2E-36 2.1E-40 242.8 8.2 113 139-251 6-118 (121)
17 1wyl_A NEDD9 interacting prote 100.0 1.2E-35 4.2E-40 239.4 8.0 108 140-249 5-112 (116)
18 2d87_A Smoothelin splice isofo 100.0 3.3E-35 1.1E-39 240.5 9.9 110 140-249 5-114 (128)
19 1bhd_A Utrophin; calponin homo 100.0 1E-35 3.4E-40 240.5 6.4 110 140-250 6-115 (118)
20 2d89_A EHBP1 protein; all alph 100.0 4.1E-35 1.4E-39 237.3 7.8 111 139-250 6-116 (119)
21 2vzc_A Alpha-parvin; membrane, 100.0 6.6E-33 2.3E-37 228.0 11.3 114 21-134 14-130 (131)
22 2yrn_A Neuron navigator 2 isof 100.0 4.8E-30 1.6E-34 210.7 8.3 114 21-134 10-126 (129)
23 1wjo_A T-plastin; CH domain, a 99.9 6.4E-24 2.2E-28 171.5 5.4 102 142-247 7-115 (124)
24 1wjo_A T-plastin; CH domain, a 99.6 4.4E-16 1.5E-20 125.6 8.6 102 30-132 8-115 (124)
25 1p2x_A RNG2 protein, RAS GTPas 99.3 1.6E-11 5.4E-16 103.7 12.3 136 32-168 14-158 (159)
26 1p5s_A RAS GTPase-activating-l 99.3 1.7E-11 5.8E-16 107.3 12.1 146 21-168 46-202 (203)
27 1wyp_A Calponin 1; CH domain, 99.2 1.3E-11 4.3E-16 101.6 7.8 104 21-126 9-114 (136)
28 1h67_A Calponin alpha; cytoske 99.2 2.9E-11 1E-15 95.6 8.0 89 31-121 5-95 (108)
29 1wyn_A Calponin-2; CH domain, 99.2 2.1E-11 7.3E-16 101.4 7.1 106 22-129 10-117 (146)
30 1wym_A Transgelin-2; CH domain 99.1 3.7E-11 1.3E-15 101.0 6.0 95 21-116 9-112 (155)
31 1ujo_A Transgelin; CH domain, 99.1 2.1E-10 7.1E-15 95.2 7.9 91 26-116 6-105 (144)
32 2vzc_A Alpha-parvin; membrane, 99.0 7.3E-10 2.5E-14 90.5 9.5 101 142-247 22-128 (131)
33 2d89_A EHBP1 protein; all alph 99.0 4.6E-10 1.6E-14 90.2 7.9 100 31-133 11-114 (119)
34 1wyr_A RHO guanine nucleotide 99.0 9.7E-10 3.3E-14 88.5 9.1 92 31-124 8-107 (121)
35 1wyl_A NEDD9 interacting prote 99.0 8.2E-10 2.8E-14 88.3 7.6 99 31-132 9-110 (116)
36 2rr8_A Iqgap1 protein; F-actin 99.0 1E-09 3.5E-14 95.2 7.6 108 8-116 5-123 (190)
37 2d87_A Smoothelin splice isofo 99.0 1.4E-09 4.9E-14 88.3 7.7 102 31-135 9-115 (128)
38 3i6x_A P195, RAS GTPase-activa 98.9 4.3E-09 1.5E-13 91.3 10.5 99 22-121 41-151 (193)
39 2d88_A Protein mical-3; all al 98.9 1.9E-09 6.6E-14 86.7 7.7 100 31-133 11-115 (121)
40 2l3g_A RHO guanine nucleotide 98.9 6.1E-09 2.1E-13 84.3 10.0 89 31-121 14-111 (126)
41 1aoa_A T-fimbrin; actin-bindin 98.9 2.1E-09 7.2E-14 98.4 7.0 98 30-128 169-274 (275)
42 1bkr_A Spectrin beta chain; fi 98.8 6.1E-09 2.1E-13 82.3 6.9 98 31-131 5-106 (109)
43 2yrn_A Neuron navigator 2 isof 98.8 4.6E-09 1.6E-13 85.4 6.1 104 141-248 17-125 (129)
44 1wyq_A Spectrin beta chain, br 98.8 1.1E-08 3.8E-13 82.9 6.7 99 31-132 9-111 (127)
45 1bhd_A Utrophin; calponin homo 98.8 4.8E-09 1.6E-13 84.1 4.4 98 31-131 10-111 (118)
46 1wku_A Alpha-actinin 3; calpon 98.6 5E-08 1.7E-12 88.3 8.0 101 30-133 141-246 (254)
47 1sh5_A Plectin 1, PLTN, PCN; a 98.6 2.1E-08 7.2E-13 90.2 4.7 100 30-132 134-237 (245)
48 1dxx_A Dystrophin; structural 98.6 2.5E-08 8.6E-13 89.8 3.8 99 31-131 137-239 (246)
49 3hoc_A Filamin-A; calponin hom 98.5 2.7E-07 9.1E-12 84.2 9.2 100 142-247 47-152 (272)
50 2qjz_A Microtubule-associated 98.5 4.4E-07 1.5E-11 72.8 9.1 96 31-131 7-105 (123)
51 3f7p_A Plectin-1; plakin, hemi 98.5 6.2E-08 2.1E-12 89.4 4.6 99 30-131 190-292 (296)
52 2wa7_A Filamin-B; disease muta 98.5 5.2E-07 1.8E-11 81.1 9.5 101 141-247 19-125 (245)
53 1wyo_A Protein EB3, microtubul 98.5 5.4E-07 1.9E-11 75.2 8.7 97 30-131 23-122 (159)
54 4b7l_A Filamin-B; structural p 98.4 6.5E-07 2.2E-11 84.5 9.1 100 143-247 18-122 (347)
55 2qjz_A Microtubule-associated 98.1 6.2E-06 2.1E-10 66.1 6.9 96 143-247 6-106 (123)
56 1sjj_A Actinin; 3-helix bundle 98.1 5.2E-06 1.8E-10 86.9 7.9 101 142-247 8-111 (863)
57 1wyo_A Protein EB3, microtubul 98.0 1.1E-05 3.7E-10 67.3 6.7 97 142-247 22-123 (159)
58 1ujo_A Transgelin; CH domain, 97.8 5E-05 1.7E-09 62.6 7.9 99 143-245 10-120 (144)
59 1h67_A Calponin alpha; cytoske 97.8 2.7E-05 9.2E-10 61.1 5.4 94 143-242 4-101 (108)
60 2ee7_A Sperm flagellar protein 97.8 1.2E-05 4.1E-10 64.8 3.1 98 144-247 17-119 (127)
61 2ee7_A Sperm flagellar protein 97.8 0.0001 3.5E-09 59.3 8.6 103 28-132 14-119 (127)
62 1wyp_A Calponin 1; CH domain, 97.7 8.6E-05 2.9E-09 60.6 8.1 97 143-245 18-118 (136)
63 1p2x_A RNG2 protein, RAS GTPas 97.7 9.8E-05 3.4E-09 61.9 8.3 97 144-245 13-115 (159)
64 1wym_A Transgelin-2; CH domain 97.7 6.6E-05 2.3E-09 62.7 6.2 96 143-245 18-127 (155)
65 1wyn_A Calponin-2; CH domain, 97.6 9.1E-05 3.1E-09 61.2 6.8 96 143-246 18-119 (146)
66 3i6x_A P195, RAS GTPase-activa 97.6 7.9E-05 2.7E-09 64.4 6.4 99 143-246 48-161 (193)
67 1p5s_A RAS GTPase-activating-l 97.6 0.00017 5.8E-09 62.8 8.1 98 143-245 56-159 (203)
68 2rr8_A Iqgap1 protein; F-actin 97.6 9.5E-05 3.3E-09 63.8 6.1 97 144-245 27-138 (190)
69 1wyr_A RHO guanine nucleotide 97.4 0.00036 1.2E-08 55.7 7.1 99 143-245 7-113 (121)
70 2l3g_A RHO guanine nucleotide 97.4 0.00044 1.5E-08 55.6 7.3 98 143-243 13-118 (126)
71 3ky9_A Proto-oncogene VAV; cal 97.3 0.0005 1.7E-08 69.0 8.4 92 34-125 10-116 (587)
72 2r8u_A Microtubule-associated 97.1 0.00097 3.3E-08 60.0 7.6 94 143-246 16-115 (268)
73 4abo_I MAL3, microtubule integ 96.8 0.0015 5.1E-08 53.3 5.5 94 143-247 7-106 (145)
74 4abo_I MAL3, microtubule integ 96.8 0.0082 2.8E-07 49.0 9.5 96 31-132 8-106 (145)
75 2qjx_A Protein BIM1; calponin 96.7 0.01 3.6E-07 47.5 9.7 89 30-124 11-102 (127)
76 2r8u_A Microtubule-associated 96.7 0.008 2.7E-07 54.0 9.7 97 31-132 17-116 (268)
77 2qjx_A Protein BIM1; calponin 96.7 0.0048 1.6E-07 49.4 7.3 94 143-247 11-110 (127)
78 3ky9_A Proto-oncogene VAV; cal 95.8 0.0075 2.6E-07 60.4 5.0 96 146-243 9-119 (587)
79 1wix_A HOOK homolog 1, RSGI RU 94.1 0.097 3.3E-06 43.7 6.4 67 30-99 10-83 (164)
80 1wix_A HOOK homolog 1, RSGI RU 86.0 0.36 1.2E-05 40.2 2.4 72 141-216 8-92 (164)
81 3bqs_A Uncharacterized protein 27.3 36 0.0012 25.2 2.4 71 82-154 4-85 (93)
82 3lhk_A Putative DNA binding pr 20.5 80 0.0027 25.1 3.5 117 26-156 19-146 (154)
83 3mab_A Uncharacterized protein 20.2 75 0.0026 23.4 3.0 73 82-154 4-85 (93)
No 1
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=100.00 E-value=3.4e-65 Score=466.06 Aligned_cols=238 Identities=82% Similarity=1.291 Sum_probs=219.1
Q ss_pred chhhhHHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHH
Q psy4004 12 SASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVN 91 (319)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~ 91 (319)
+.+.++. ..++++|+.+|+++|++|||++|.+.+..|+||++||+||++||+|+|+|+|++++++..+.+|++++||++
T Consensus 11 ~~~~~~~-~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~~~~~~~~eNi~ 89 (254)
T 1wku_A 11 EEDWDRD-LLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVN 89 (254)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCSCCSHHHHHHHHH
T ss_pred ccccchh-hhhhccchHHHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCCCCCCccHHHHHHhHH
Confidence 3444555 457899999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchhhhhhhhHHHHHHHhhhCCCCCcccccCCCCCc
Q psy4004 92 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFK 171 (319)
Q Consensus 92 ~aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~ 171 (319)
.||+|+++.|+++++|+++||+|||+++||||+|+||++|++++++.+..+++++||+|||.++++|++++|+||++||+
T Consensus 90 ~aL~~~k~~gv~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~i~~~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~s~~ 169 (254)
T 1wku_A 90 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWK 169 (254)
T ss_dssp HHHHHHHTTTCCCCSCCHHHHHHCCHHHHHHHHHHHHHHHHTTTCEETTEEHHHHHHHHHHHHHTTCTTCCCCSSSGGGT
T ss_pred HHHHHHHHcCCCccCCCHHHHhccchHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHccCCCCCcCCCCccchh
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred chHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhcccc
Q psy4004 172 DGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQ 250 (319)
Q Consensus 172 DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~~~~ 250 (319)
||+|||+|||+|+|+++||+.+.+.++.+|+++||++|++++|||++++|||+++++.||++++||||++||++|++.+
T Consensus 170 DG~a~~aLi~~~~P~~id~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~~~~~~~~ 248 (254)
T 1wku_A 170 DGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAE 248 (254)
T ss_dssp TSHHHHHHHHHHCTTSCCGGGCCTTCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHCCCcccccccCcCCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999988778999999999999999999533
No 2
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=100.00 E-value=7e-63 Score=468.92 Aligned_cols=225 Identities=36% Similarity=0.653 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC--CCCCchhhHhhhHHHHHHHHHhC
Q psy4004 23 QAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DRGKMRFHKIANVNKALDFIASK 100 (319)
Q Consensus 23 ~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~--~~~~~r~~~ieNv~~aL~~lk~~ 100 (319)
+++|+++|++|||+|||+||.+.+..|+||++||+||++|++|+|+|+|++++++ .+|.+|+|+++|++.||+|+++.
T Consensus 11 d~~we~iQ~ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~ 90 (347)
T 4b7l_A 11 DAPWKKIQQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRE 90 (347)
T ss_dssp --CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999999999764 57899999999999999999999
Q ss_pred CceeeecCchhhhccchhhhhhHHHHHHHHhhhcccch--------hhhhhhhHHHHHHHhhhCCCCCcccccCCCCCcc
Q psy4004 101 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV--------EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKD 172 (319)
Q Consensus 101 gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~--------~~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~D 172 (319)
|+++++|+++||+|||+++||||+|+||++|+++.+.. +..++++.||+|||.++ ++++|+||++||+|
T Consensus 91 g~~lv~i~~~DIvdGn~~liLgLiW~li~~~~i~~~~~~~~~~~~~~~~~~k~~LL~W~~~~~---~~~~v~nF~~sw~D 167 (347)
T 4b7l_A 91 SIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKI---PYLPITNFNQNWQD 167 (347)
T ss_dssp TCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSCCC-------CCCCHHHHHHHHHHHHC---TTSCCCCSSGGGTT
T ss_pred ccccCCCCcchhhcCCHhhHHHHHHHHHHHHhhhhhhcccccchhhhhhhHHHHHHHHHHhhC---CCcccCCCCCCccc
Confidence 99999999999999999999999999999999986532 24578999999999986 57889999999999
Q ss_pred hHHHHHHHHhhCCCcc-ccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhcccch
Q psy4004 173 GLAFCALIHRHRPELI-DYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQ 251 (319)
Q Consensus 173 G~al~aLi~~~~P~li-~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~~~~~ 251 (319)
|+|||||||+|+|+++ ||+.+++.+..+|+++||++|+++||||++|+|||++. ..|||+||||||++||+++..+..
T Consensus 168 G~af~aLi~~~~P~~~~d~~~l~~~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~-~~pDeksimtYvs~~~~~~~~~~~ 246 (347)
T 4b7l_A 168 GKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKAKLKPGA 246 (347)
T ss_dssp SHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTC-TTCCHHHHHHHHTTGGGCCCCTTC
T ss_pred hHHHHHHHHHhCCccccchhhcCcCCHHHHHHHHHHHHHHhcCCCcccCHHHcCC-CCCChhHHHHHHHHHhhhccCccc
Confidence 9999999999999999 89999999999999999999999999999999999985 579999999999999999875543
No 3
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=100.00 E-value=9.9e-63 Score=456.68 Aligned_cols=225 Identities=50% Similarity=0.863 Sum_probs=214.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHhC
Q psy4004 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASK 100 (319)
Q Consensus 21 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~~ 100 (319)
+++++|+.+|+++|++|||++|.+.+..|+||++||+||++||+|+|+|+|+.+++ .++++|+|++||++.||+|+++.
T Consensus 65 ~~~~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~-~~~~~r~~kleNvn~aL~~lk~~ 143 (296)
T 3f7p_A 65 RIADERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDYLRHR 143 (296)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCSSHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCcccc-cCCcChhhhhhhHHHHHHHHHHh
Confidence 46789999999999999999999988899999999999999999999999999987 46789999999999999999999
Q ss_pred CceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh----hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHH
Q psy4004 101 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE----EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAF 176 (319)
Q Consensus 101 gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~----~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al 176 (319)
|+++++|+++||+|||+++||||+|+||++|+++++..+ ..+++++||+|||.++++|++++|+||++||+||++|
T Consensus 144 gv~lv~I~~~DIvdGn~kliLgLlW~Li~~~~i~~i~~~g~~~~~s~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af 223 (296)
T 3f7p_A 144 QVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLF 223 (296)
T ss_dssp TCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCCCSSCCTTSCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHH
T ss_pred CccccCCChhhhhccchHHHHHHHHHhhcccceeeeeccCCcccCCHHHHHHHHHHHHhcCCCCCcCCCccccccccHHH
Confidence 999999999999999999999999999999999988643 4678999999999999999999999999999999999
Q ss_pred HHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 177 CALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 177 ~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
|+|||+|+|+++||+.+.+.+..+|+++||++|++++|||++++|||++ ...||+++|||||++||++|+
T Consensus 224 ~aLI~~~~P~lid~~~l~~~~~~~N~~~Af~~Ae~~LGi~~ll~pEDi~-~~~pDeksimtyvs~ly~~fp 293 (296)
T 3f7p_A 224 NAIIHRHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVD-VPQPDEKSIITYVSSLYDAMP 293 (296)
T ss_dssp HHHHHHHCGGGCCHHHHTTSCHHHHHHHHHHHHHHHHCCCCCCCHHHHS-SSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCcCccCHHHcCcccHHHHHHHHHHHHHHhCCCCccCCHHHhc-CCCCcHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999889999999999986 457999999999999999998
No 4
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=100.00 E-value=1.3e-61 Score=444.80 Aligned_cols=221 Identities=37% Similarity=0.659 Sum_probs=201.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCC-CCC-CCCCchhhHhhhHHHHHHHHH
Q psy4004 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETL-PKP-DRGKMRFHKIANVNKALDFIA 98 (319)
Q Consensus 21 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~-~~~-~~~~~r~~~ieNv~~aL~~lk 98 (319)
..+++|+.+|++||++|||++|.+.+..|+||++||+||++||+|+|+|+|+++ ++. .+|.+|+|+++||+.||+|++
T Consensus 39 ~~d~~w~~vQkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk 118 (272)
T 3hoc_A 39 AEDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLD 118 (272)
T ss_dssp ---CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred hhChhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999998 543 467899999999999999999
Q ss_pred hCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccch--------hhhhhhhHHHHHHHhhhCCCCCcccccCCCCC
Q psy4004 99 SKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV--------EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSF 170 (319)
Q Consensus 99 ~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~--------~~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw 170 (319)
+.|+++++|+++||+|||+++||||+|+||++|+++.+.. +..++++.||+|||.+ |++++|+||++||
T Consensus 119 ~~gv~lvnI~~~DIvdGn~kliLgLlW~Li~~~~i~~l~~~~e~~~~~~~~s~k~~LL~W~n~~---~~~~~I~nFs~sw 195 (272)
T 3hoc_A 119 RESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWDEEEDEEAKKQTPKQRLLGWIQNK---LPQLPITNFSRDW 195 (272)
T ss_dssp HTTCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CCHHHHHHHHHHHH---CTTSCCCCSSGGG
T ss_pred HcCCcccccccchhhcCCHHHHHHHHHHHHHHHhhhhhhccccccccccccCHHHHHHHHHHhh---CCCCCCCChhhcc
Confidence 9999999999999999999999999999999999987632 2457899999999987 4689999999999
Q ss_pred cchHHHHHHHHhhCCCcc-ccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 171 KDGLAFCALIHRHRPELI-DYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 171 ~DG~al~aLi~~~~P~li-~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
+||++||+|||+|+|+++ ||+.+.+.+..+|+++||++|++++|||++++|||++. ..||++||||||++||++
T Consensus 196 ~DG~af~aLi~~~~P~li~d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~ll~peDiv~-~~pD~ksimtYvs~~~~a 270 (272)
T 3hoc_A 196 QSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVD-PNVDKHSVMTYLSQFPKA 270 (272)
T ss_dssp TTSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTC-TTCCHHHHHHHHTTCC--
T ss_pred cchHHHHHHHHHhCcccccchhhcCccCHHHHHHHHHHHHHHhCCCCccCCHHHhcc-CCCChHHHHHHHHHhhcc
Confidence 999999999999999999 89999999999999999999999999999999999986 479999999999999875
No 5
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=100.00 E-value=2.7e-60 Score=431.85 Aligned_cols=226 Identities=50% Similarity=0.850 Sum_probs=211.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcc-----cCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHH
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRK-----AGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDF 96 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~-----~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~ 96 (319)
.+++|+.+|+++|++|||++|.+ .+..|+||++||+||++||+|+|+|+|+++++ ..+++++|++||++.||+|
T Consensus 5 ~~~e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~~~eNv~~aL~~ 83 (245)
T 1sh5_A 5 EFDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHKLQNVQIALDY 83 (245)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCC-CCCCSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccC-CCCcchHHHHHhHHHHHHH
Confidence 35789999999999999999988 45679999999999999999999999999986 4678999999999999999
Q ss_pred HHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh----hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcc
Q psy4004 97 IASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE----EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKD 172 (319)
Q Consensus 97 lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~----~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~D 172 (319)
+++.|+++++|+++||+|||+++||||+|+||++|+++.+..+ ..+++++||+|||.++++|++++|+||++||+|
T Consensus 84 ~k~~g~~l~~I~~~DIvdg~~k~iLgLlw~li~~~~i~~i~~~g~~~~~~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~D 163 (245)
T 1sh5_A 84 LRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRD 163 (245)
T ss_dssp HHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHTTTTCCCTTCCSSCCHHHHHHHHHHHHTTTSTTCCCCCSSGGGTT
T ss_pred HHHcCCcccCCChHhhhcccHHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHhccCCCcccCCccccccc
Confidence 9999999999999999999999999999999999999987643 357889999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhccc
Q psy4004 173 GLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGA 249 (319)
Q Consensus 173 G~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~~~ 249 (319)
|+|||+|||+|+|+++||+.+...+..+|+++||++|++++|||++++|||++. ..||++++||||++||++|++.
T Consensus 164 G~a~~aLi~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~~lGi~~~l~peDi~~-~~pd~k~i~tyva~l~~~~~~~ 239 (245)
T 1sh5_A 164 GRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDV-PQPDEKSIITYVSSLYDAMPRV 239 (245)
T ss_dssp SHHHHHHHHTTCTTTCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCCHHHHSS-SSCCHHHHHHHHHHHHHHCC--
T ss_pred hHHHHHHHHHHCCCCCCHHHcccCCHHHHHHHHHHHHHHhCCCCccCCHHHhcc-CCCcHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999998899999999999864 5799999999999999999953
No 6
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=100.00 E-value=1e-59 Score=427.96 Aligned_cols=220 Identities=37% Similarity=0.672 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCC-CCC-CCCCchhhHhhhHHHHHHHHHh
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETL-PKP-DRGKMRFHKIANVNKALDFIAS 99 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~-~~~-~~~~~r~~~ieNv~~aL~~lk~ 99 (319)
.+++|+.+|+++|++|||++|.+.+..|+||++||+||++||+|+|+|+|+.+ ++. .+|.+|+|++||++.||+|+++
T Consensus 13 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~ 92 (245)
T 2wa7_A 13 EDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDR 92 (245)
T ss_dssp --CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999998888999999999999999999999999998 443 4568999999999999999999
Q ss_pred CCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccc--------hhhhhhhhHHHHHHHhhhCCCCCcccccCCCCCc
Q psy4004 100 KGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS--------VEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFK 171 (319)
Q Consensus 100 ~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~--------~~~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~ 171 (319)
.|+++++|+++||+||++++||||+|+||++|+++.+. ....++++.||+|||.++ ++++|+||++||+
T Consensus 93 ~g~~lv~I~~~DIvdG~~kliLgLlW~li~~~~i~~~~~~~~~~~~~~~~~~~~~LL~W~~~~~---~~~~v~nFs~s~~ 169 (245)
T 2wa7_A 93 ESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKI---PYLPITNFNQNWQ 169 (245)
T ss_dssp TTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSCCSSCC----CCCCHHHHHHHHHHHHS---TTSCCCCSSGGGT
T ss_pred cCCcccCCCHHHhhCCCHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHhC---CCCCCCCCcccch
Confidence 99999999999999999999999999999999997652 224578999999999986 4689999999999
Q ss_pred chHHHHHHHHhhCCCcc-ccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 172 DGLAFCALIHRHRPELI-DYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 172 DG~al~aLi~~~~P~li-~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
||+|||+|||+|+|+++ ||+.++..+..+|+++||++|++++|||++++|||+++ +.||++|+||||++||++
T Consensus 170 dG~a~~aLi~~~~P~~i~~~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~-~~~d~ksi~tyvs~~~~~ 243 (245)
T 2wa7_A 170 DGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 243 (245)
T ss_dssp TSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHSCCCCSSCHHHHTC-TTCCHHHHHHHHTHHHHC
T ss_pred hhHHHHHHHHHHCccccccccccCcccHHHHHHHHHHHHHHhCCCCccCCHHHhcc-CCCcHHHHHHHHHHHhcc
Confidence 99999999999999999 99999999999999999999999999999999999986 579999999999999985
No 7
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=100.00 E-value=6.4e-61 Score=503.95 Aligned_cols=259 Identities=83% Similarity=1.272 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHhCCc
Q psy4004 23 QAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGV 102 (319)
Q Consensus 23 ~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~~gv 102 (319)
++.|+.+|+++|++|||++|.+.+++|+||++||+||++||+|+|+|+|++++++.++.+++|+++|++.||+|++..|+
T Consensus 2 ~~~~~~~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~~~g~ 81 (863)
T 1sjj_A 2 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGV 81 (863)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeCCCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred eeeecCchhhhccchhhhhhHHHHHHHHhhhcccchhhhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHh
Q psy4004 103 KLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHR 182 (319)
Q Consensus 103 ~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~ 182 (319)
++++|+|+||+|||+++||||+|+||++|++++++.+..++++.||+|||.++++|++++|+||++||+||++||+|||+
T Consensus 82 ~~~~i~~~di~~g~~~~~l~l~w~l~~~~~~~~~~~~~~~~~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~ 161 (863)
T 1sjj_A 82 KLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHR 161 (863)
T ss_dssp CCTTCCSHHHHTTCHHHHHHHHHHHHSCCCCCCCCCCCCCSTTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHT
T ss_pred ccCCCChHHhhcCCHHHHHHHHHHHHHHHhhcccchhccchHHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred hCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhcccchhhhhhhccccC
Q psy4004 183 HRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQVFHSRVQHMTN 262 (319)
Q Consensus 183 ~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~~~~~~~~~~~~~~~n 262 (319)
|+|+++||+.+.+.++.+|+++||++|++++|||++++|+|+++++.||+++|||||++||++|++
T Consensus 162 ~~p~~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~~~~~~-------------- 227 (863)
T 1sjj_A 162 HRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSG-------------- 227 (863)
T ss_dssp TCCSSSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTTTTTCC--------------
T ss_pred hCCCCcChhhCCCCCHHHHHHHHHHHHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHHHHhcc--------------
Confidence 999999999999999999999999999999999999999999888889999999999999999993
Q ss_pred CCCCcchhhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4004 263 TAMPDERAIMTYVSSYYHCFSGAQKAETAANRICKVLKVNQENERLMEEYERLAS 317 (319)
Q Consensus 263 ~~~~de~~i~~yv~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
..+.+++.+||++++....+++.|.++|+++++
T Consensus 228 ----------------------~~~~~~~~~~~~~~~~~~~~~e~l~~~y~~~~~ 260 (863)
T 1sjj_A 228 ----------------------AQKAETAANRICKVLAVNQENEQLMEDYEKLAS 260 (863)
T ss_dssp ----------------------CSCSTTCCTTCCCCTTTHHHHHHHHHHHHHHHH
T ss_pred ----------------------cchhhHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 333444566788888888888888888888765
No 8
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=100.00 E-value=2e-59 Score=426.33 Aligned_cols=225 Identities=39% Similarity=0.720 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCC-CccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHhC
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGT-AIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASK 100 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~-~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~~ 100 (319)
.+++|+.+|+++|++|||++|.+.+. .|+||++||+||++||+|+|.|+|+++++ .++.+|+|++||++.||+++++.
T Consensus 9 ~~~e~~~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~-~~~~~~~~~~eNv~~aL~~~k~~ 87 (246)
T 1dxx_A 9 DSYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPK-EKGSTRVHALNNVNKALRVLQNN 87 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCC-CCCSSHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCC-CCCccHHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999998764 79999999999999999999999999986 45789999999999999999999
Q ss_pred CceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh------hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchH
Q psy4004 101 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE------EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGL 174 (319)
Q Consensus 101 gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~------~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~ 174 (319)
|+++++|+++||+|||+++||||+|+||++|++..+..+ ..++++.||+|||.++++|++++|+||++||+||+
T Consensus 88 g~~l~~I~~~DIvdg~~~liL~Llw~li~~~~i~~~~~e~~~~~~~~~~~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~ 167 (246)
T 1dxx_A 88 NVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGL 167 (246)
T ss_dssp TCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSH
T ss_pred CCccccCCHHHhhcccHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccHHHHHHHHHHHHhccCCCCCcCCCcccchhHH
Confidence 999999999999999999999999999999999876543 34578899999999999999999999999999999
Q ss_pred HHHHHHHhhCCCccccCCCC-CCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHHHhcc
Q psy4004 175 AFCALIHRHRPELIDYHKLS-KDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQG 248 (319)
Q Consensus 175 al~aLi~~~~P~li~~~~l~-~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~~ 248 (319)
|||+|||+|+|+++||+.+. ..++.+|++.||++|++++|||++++|||++. ..||++++||||++||++|++
T Consensus 168 a~~aLi~~~~P~li~~~~~~~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~-~~pD~k~i~tyva~l~~~~~~ 241 (246)
T 1dxx_A 168 ALNALIHSHRPDLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDT-TYPDKKSILMYITSLFQVLPQ 241 (246)
T ss_dssp HHHHHHHHHCGGGSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCCHHHHSS-SSCCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHCcCccchhhhcccCCHHHHHHHHHHHHHHhCCCCccCCHHHhhc-CCCcHHHHHHHHHHHHHHccC
Confidence 99999999999999999886 68899999999999998899999999999975 589999999999999999994
No 9
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=100.00 E-value=5.9e-53 Score=389.64 Aligned_cols=220 Identities=20% Similarity=0.382 Sum_probs=192.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcccC---------CCccchHHHhhhHHHHHHHHHHhcCCCCC--CCC-CCCchhhHhh
Q psy4004 21 FLQAVHAKSHLLTFTAWCNSHLRKAG---------TAIENIEEDFRNGLKLMLLLEVISGETLP--KPD-RGKMRFHKIA 88 (319)
Q Consensus 21 ~~~~~~~~~q~~~f~~WiN~~L~~~~---------~~v~dl~~dl~DGv~L~~Lle~l~~~~~~--~~~-~~~~r~~~ie 88 (319)
..+..|+..|+++|++|||++|.+.+ ..|.||++||+||++||+|+|.++|+.++ ... .+.++++++|
T Consensus 16 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~e 95 (275)
T 1aoa_A 16 GTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQE 95 (275)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHH
Confidence 35678999999999999999998743 35899999999999999999999999886 333 3556899999
Q ss_pred hHHHHHHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh-------------------hhhhhhHHHH
Q psy4004 89 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE-------------------EMTAKEGLLL 149 (319)
Q Consensus 89 Nv~~aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~-------------------~~~~k~~LL~ 149 (319)
|++.||+++++.|+++++|+++||+||++++||||+|+||++|++..++.. ..++++.||+
T Consensus 96 Nv~~aL~~~k~~g~~l~~I~~~DIvdg~~~liLgLlw~li~~~~~~~I~~~~~~~l~~ll~~ge~~~~~~~~s~~~~LL~ 175 (275)
T 1aoa_A 96 NLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLR 175 (275)
T ss_dssp HHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSSCTTCC--------CHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCHHHHHcCcHHHHHHHHHHHHHHhhhcccccccChHHHHhhccCCchhhhhccCHHHHHHH
Confidence 999999999999999999999999999999999999999999998776421 2367889999
Q ss_pred HHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCC---------ccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCC
Q psy4004 150 WCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPE---------LIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLD 220 (319)
Q Consensus 150 W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~---------li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~ 220 (319)
|||+++..++...|+||++||+||++||+|||+|+|+ .+|++.++..+..+|+++||++|+ .+|||++++
T Consensus 176 W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~-~lGi~~~l~ 254 (275)
T 1aoa_A 176 WANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQAD-KLGCRQFVT 254 (275)
T ss_dssp HHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHT-TTTCCCSCC
T ss_pred HHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHH-HcCCCCcCC
Confidence 9999885442223999999999999999999999999 789999999999999999999999 599999999
Q ss_pred cccccCCCCCChhhHHHHHHHHHH
Q psy4004 221 PEDLINTPKPDERAIMTYVSCYYH 244 (319)
Q Consensus 221 ~eD~~~~~~pDe~si~~yls~l~~ 244 (319)
|||++ .||++++||||++||+
T Consensus 255 peDi~---~~~~k~i~tyva~Lfn 275 (275)
T 1aoa_A 255 PADVV---SGNPKLNLAFVANLFN 275 (275)
T ss_dssp HHHHH---TTCHHHHHHHHHHHHC
T ss_pred HHHcC---CCChhHHHHHHHHHhC
Confidence 99997 4789999999999985
No 10
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=100.00 E-value=4.7e-51 Score=406.20 Aligned_cols=219 Identities=24% Similarity=0.421 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC--CC--CCchhhHhhhHHHHHHHH
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP--DR--GKMRFHKIANVNKALDFI 97 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~--~~--~~~r~~~ieNv~~aL~~l 97 (319)
.+++|+.+|+++|++|||+++. +..|+||++||+||++|++|+|+|+|++++.+ .+ +++|+|+++||+.||+|+
T Consensus 269 ~~~~~~~~q~ktf~~WiN~~~~--~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~ 346 (506)
T 1pxy_A 269 TEDVETCRDERCYRLWINSLGI--DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIG 346 (506)
T ss_dssp --CCHHHHHHHHHHHHHTTTTC--SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCC--CCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHH
Confidence 3678999999999999999974 57899999999999999999999999988632 22 368999999999999999
Q ss_pred HhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccch-------hhhhhhhHHHHHHHhhhCC-CCCcccccCC-C
Q psy4004 98 ASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV-------EEMTAKEGLLLWCQRKTAP-YKNVNVQNFH-L 168 (319)
Q Consensus 98 k~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~-------~~~~~k~~LL~W~q~~~~~-~~~v~V~nfs-~ 168 (319)
++.|+++++|+++||+|||.++||||+|+|| ||++.++.. .....++.||+|||+++.+ +.+++|+||+ +
T Consensus 347 k~~~v~l~~I~~~dIvdg~~kl~L~Liw~li-r~~i~~~~~~l~~~~~~~~~~~~~LL~W~~~~~~~~~~~~~i~nF~d~ 425 (506)
T 1pxy_A 347 KQLKFSLVNVAGNDIVQGNKKLILGLLWQLM-RFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDK 425 (506)
T ss_dssp HHTTCCCCSCCHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTTCCCCCSSTTCG
T ss_pred HHcCCcccCCCHHHHhcCCHHHHHHHHHHHH-HHhhHHHHHHhhcccccccccHHHHHHHHHHHhhhcCCccccCCCCcc
Confidence 9999999999999999999999999999998 888766531 2234578999999999986 4589999999 8
Q ss_pred CCcchHHHHHHHHhhCCCccccCCCCCC----ChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHHHH
Q psy4004 169 SFKDGLAFCALIHRHRPELIDYHKLSKD----NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCYYH 244 (319)
Q Consensus 169 sw~DG~al~aLi~~~~P~li~~~~l~~~----~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l~~ 244 (319)
||+||+|||+|||+|+|+++||+.+.+. +..+|+++||++|+ ++|||++++|||++ .||++++|||+++||+
T Consensus 426 s~~dG~a~~aLi~~~~P~li~~~~l~~~~s~~~~~~N~~~a~~~a~-~lGi~~~l~peDi~---~~d~ksi~tyv~~l~~ 501 (506)
T 1pxy_A 426 SLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVAR-KLGCSVFLLPEDIV---EVNQKMILILTASIMY 501 (506)
T ss_dssp GGGGCHHHHHHHHHHCGGGCCTTSCCCSCSHHHHHHHHHHHHHHHH-HHTCCCCCCHHHHH---TTCHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhCCCeeehhhcccCCCchhHHHHHHHHHHHHH-HcCCCCcCCHHHcc---CCChhHHHHHHHHHHH
Confidence 9999999999999999999999999764 46899999999997 59999999999997 3699999999999999
Q ss_pred Hhc
Q psy4004 245 AFQ 247 (319)
Q Consensus 245 ~f~ 247 (319)
++.
T Consensus 502 ~~~ 504 (506)
T 1pxy_A 502 WSL 504 (506)
T ss_dssp HHT
T ss_pred HHh
Confidence 976
No 11
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=100.00 E-value=5.6e-49 Score=391.77 Aligned_cols=225 Identities=23% Similarity=0.377 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC---------CCccchHHHhhhHHHHHHHHHHhcCCCCCC-----C--CCCCchhhH
Q psy4004 23 QAVHAKSHLLTFTAWCNSHLRKAG---------TAIENIEEDFRNGLKLMLLLEVISGETLPK-----P--DRGKMRFHK 86 (319)
Q Consensus 23 ~~~~~~~q~~~f~~WiN~~L~~~~---------~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~-----~--~~~~~r~~~ 86 (319)
...|+..|+++|++|||++|.+.+ ..|.||++||+||++||+|+|.++|++++. | .++.+++++
T Consensus 6 ~~~~~~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~~ 85 (513)
T 1rt8_A 6 MHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKC 85 (513)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHH
T ss_pred cCcccHHHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHHH
Confidence 457899999999999999999753 247899999999999999999999987742 1 246889999
Q ss_pred hhhHHHHHHHHHhCCc-eeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh-------------------hhhhhhH
Q psy4004 87 IANVNKALDFIASKGV-KLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE-------------------EMTAKEG 146 (319)
Q Consensus 87 ieNv~~aL~~lk~~gv-~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~-------------------~~~~k~~ 146 (319)
+||++.||++++..|+ ++++|+++||+||+.++||||+|+||++|+++.++.+ ..++++.
T Consensus 86 ~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~~~liLgLiW~li~~~~l~~i~~~~~pel~~l~~~~e~~~~~~~~~~~~~ 165 (513)
T 1rt8_A 86 IENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKI 165 (513)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHSSCCC----------------CHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCCcCHHhhhcCCHHHHHHHHHHHHHHhhhcccccccCHHHHhhhccCCchhhhhcCCHHHH
Confidence 9999999999999999 9999999999999999999999999999999877532 2467899
Q ss_pred HHHHHHhhhC--CCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccc
Q psy4004 147 LLLWCQRKTA--PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDL 224 (319)
Q Consensus 147 LL~W~q~~~~--~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~ 224 (319)
||+|||.++. +|+ ++|+||++||+||++||+|||+++|+++|++.+...+..+|+++||++|++ +|||++++|+|+
T Consensus 166 LL~W~n~~l~~~g~~-~~V~nFs~s~~DG~a~~aLl~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~-lgi~~~l~peDi 243 (513)
T 1rt8_A 166 LLRWFNYHLKAANWP-RTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEK-LDCRKYLTPTAM 243 (513)
T ss_dssp HHHHHHHHHHHTTCS-CCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGGGCCCHHHHHHHHHHHHHT-TTCCCSCCHHHH
T ss_pred HHHHHHHHHHhcCCC-cCcccchhhhhccHHHHHHHHHHCccccccCCCCccCHHHHHHHHHHHHHH-cCCCccCCHHHh
Confidence 9999999874 574 999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred cCCCCCChhhHHHHHHHHHHHhcccchh
Q psy4004 225 INTPKPDERAIMTYVSCYYHAFQGAQQV 252 (319)
Q Consensus 225 ~~~~~pDe~si~~yls~l~~~f~~~~~~ 252 (319)
++ +|++++|+||++||++|++..+.
T Consensus 244 ~~---~~~k~il~yva~l~~~~~~~~~~ 268 (513)
T 1rt8_A 244 VA---GNPKLNLAFVAHLFNTHPGLEPL 268 (513)
T ss_dssp HT---TCHHHHHHHHHHHHHHCCCCCC-
T ss_pred cC---CCHHHHHHHHHHHHhhhcccCcc
Confidence 84 68899999999999999976543
No 12
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=100.00 E-value=8.8e-49 Score=390.36 Aligned_cols=215 Identities=24% Similarity=0.450 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCC-----CC-CCC--CCchhhHhhhHHHH
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETL-----PK-PDR--GKMRFHKIANVNKA 93 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~-----~~-~~~--~~~r~~~ieNv~~a 93 (319)
++.+++ .|+++|++|||++. .+..|+||++||+||++||+|+|++.++.+ ++ |.. ..+|+|++|||+.|
T Consensus 279 ~~~e~~-~q~k~f~~WiN~~~--~~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~a 355 (513)
T 1rt8_A 279 FDAEGE-REARVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYA 355 (513)
T ss_dssp --CHHH-HHHHHHHHHHHHTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHH
T ss_pred hcchhH-HHHHHHHHHHHhcC--CCCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHH
Confidence 444554 79999999999994 356799999999999999999996655543 22 211 26899999999999
Q ss_pred HHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccc-----hhhhhhhhHHHHHHHhhhC-CCCCcccccCC
Q psy4004 94 LDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDIS-----VEEMTAKEGLLLWCQRKTA-PYKNVNVQNFH 167 (319)
Q Consensus 94 L~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~-----~~~~~~k~~LL~W~q~~~~-~~~~v~V~nfs 167 (319)
|+|+++.|+++++|+++||+|||+++||||+|+||++|.++.++ .+..+.+ .||+|||+++. +|++++|+||+
T Consensus 356 l~~~~~~gv~lv~i~~~DIvdg~~~~~LgLlW~li~~~~~~~l~~l~~~~~~~~~~-~LL~W~~~~~~~~~~~~~i~nF~ 434 (513)
T 1rt8_A 356 VDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSLSRGGKTLSDS-DMVAWANSMAAKGGKGSQIRSFR 434 (513)
T ss_dssp HHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC------CCCHH-HHHHHHHHHHTTTCSSCCCSSTT
T ss_pred HHHHHHcCceeeccchhhhhcCCchhhHHHHHHHHHHHHHHHHHhhccCCCcCCHH-HHHHHHHHHhhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999888764432 1223444 59999999997 58899999999
Q ss_pred -CCCcchHHHHHHHHhhCCCccccCCCCCC----ChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCCChhhHHHHHHHH
Q psy4004 168 -LSFKDGLAFCALIHRHRPELIDYHKLSKD----NPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKPDERAIMTYVSCY 242 (319)
Q Consensus 168 -~sw~DG~al~aLi~~~~P~li~~~~l~~~----~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~pDe~si~~yls~l 242 (319)
+||+||+|||+|||+|+|+++||+.+.+. +..+|+++||++|++ +|||++++|||++.. ++++|||||++|
T Consensus 435 ~~s~~dG~a~~aLi~~~~P~~i~~~~l~~~~~~~~~~~n~~~af~~A~~-lGi~~~l~peDi~~~---~pksi~tyva~l 510 (513)
T 1rt8_A 435 DPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARK-LGAVIFILPEDIVAV---RPRLVLHFIGSL 510 (513)
T ss_dssp CGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHHHHHHH-TTCCCCCCHHHHHTT---CHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhCCCcCCHHhhccccChhhHHHHHHHHHHHHHH-cCCCccCCHHHhcCC---CcccHHHHHHHH
Confidence 89999999999999999999999998764 689999999999986 999999999999854 359999999999
Q ss_pred HH
Q psy4004 243 YH 244 (319)
Q Consensus 243 ~~ 244 (319)
|+
T Consensus 511 ~~ 512 (513)
T 1rt8_A 511 MA 512 (513)
T ss_dssp HT
T ss_pred Hh
Confidence 96
No 13
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=100.00 E-value=3.1e-46 Score=371.54 Aligned_cols=223 Identities=21% Similarity=0.352 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccC---------CCccchHHHhhhHHHHHHHHHHhcCCCCCCC--C-CC-CchhhHhhhHH
Q psy4004 25 VHAKSHLLTFTAWCNSHLRKAG---------TAIENIEEDFRNGLKLMLLLEVISGETLPKP--D-RG-KMRFHKIANVN 91 (319)
Q Consensus 25 ~~~~~q~~~f~~WiN~~L~~~~---------~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~--~-~~-~~r~~~ieNv~ 91 (319)
.|.+.|+++|++|||++|.+.+ ..|.||++||+||++||+|+|.++|+++..+ + .+ .++++++||++
T Consensus 3 ~~~~~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi~ 82 (506)
T 1pxy_A 3 PGIQSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHT 82 (506)
T ss_dssp ----CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHHH
Confidence 4778899999999999999862 3478999999999999999999999988432 2 23 35899999999
Q ss_pred HHHHHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchh-------------------hhhhhhHHHHHHH
Q psy4004 92 KALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVE-------------------EMTAKEGLLLWCQ 152 (319)
Q Consensus 92 ~aL~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~-------------------~~~~k~~LL~W~q 152 (319)
.+|++++..|+++++|+++||++|+.+++|||+|+||++|+++.++.+ ..++++.||+|||
T Consensus 83 ~~L~~~k~~g~~~~~i~~~Dl~dg~~~liLgLiw~li~~~~l~~i~~~~~p~l~~l~~~~e~~~~~~~~~~~~~LL~W~n 162 (506)
T 1pxy_A 83 LCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMN 162 (506)
T ss_dssp HHHHHHHHTTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSCC-----------------CCSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCHHHHhcCChHHHHHHHHHHHHHHHHHhhhhccCHHHHHhhcCCcchhhhhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876421 2468889999999
Q ss_pred hhhC--CCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCCcccccCCCCC
Q psy4004 153 RKTA--PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLDPEDLINTPKP 230 (319)
Q Consensus 153 ~~~~--~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~~eD~~~~~~p 230 (319)
.++. +| .++|+||++||+||++||+|||+++|+++|++.+...+..+|+++||++|++ +|||++++|+|++++
T Consensus 163 ~~l~~~g~-~~~v~nFs~s~~DG~a~~~Ll~~~~P~~i~~~~l~~~~~~~n~~~a~~~a~~-lGi~~~l~peDi~~~--- 237 (506)
T 1pxy_A 163 FHLKKGGY-KKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIVEG--- 237 (506)
T ss_dssp HHHHHTTC-CSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCCSHHHHHHHHHHHHHH-TTCCCCCCHHHHHTT---
T ss_pred HHHHhcCC-CccCccccccccchHHHHHHHHHhCccccccccCCcCCHHHHHHHHHHHHHH-cCCCCcCCHHHHhcC---
Confidence 8765 66 4899999999999999999999999999999999999999999999999996 999999999999853
Q ss_pred ChhhHHHHHHHHHHHhcccchh
Q psy4004 231 DERAIMTYVSCYYHAFQGAQQV 252 (319)
Q Consensus 231 De~si~~yls~l~~~f~~~~~~ 252 (319)
+.+++||||++||++|++..+.
T Consensus 238 ~~k~v~tyva~l~~~~~~~~~~ 259 (506)
T 1pxy_A 238 SSTLNLAFVAQIFHERNGLNKD 259 (506)
T ss_dssp CHHHHHHHHHHHHHHCCCCC--
T ss_pred ChhHHHHHHHHHhhhcCCCCCc
Confidence 5699999999999999986553
No 14
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=100.00 E-value=3.4e-36 Score=240.05 Aligned_cols=106 Identities=56% Similarity=0.994 Sum_probs=102.3
Q ss_pred hhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCCC
Q psy4004 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRMLD 220 (319)
Q Consensus 141 ~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll~ 220 (319)
.+++++||+|||.++++|++++|+||++||+||+|||||||+|+|+++||+.+...++.+|++.||++|+++||||++|+
T Consensus 2 ~s~k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~ 81 (109)
T 1bkr_A 2 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLD 81 (109)
T ss_dssp CHHHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCcCCHHHHHHHHHHHHHHHcCCCccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 221 PEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 221 ~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
|||++ .+.||+++|||||++||++|+
T Consensus 82 ~eDv~-~~~pD~ksi~tYvs~~~~~f~ 107 (109)
T 1bkr_A 82 PEDIS-VDHPDEKSIITYVVTYYHYFS 107 (109)
T ss_dssp HHHHS-SSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHcc-CCCCcHHHHHHHHHHHHHHhh
Confidence 99985 568999999999999999998
No 15
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=247.12 Aligned_cols=110 Identities=53% Similarity=0.931 Sum_probs=104.5
Q ss_pred hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCC
Q psy4004 140 EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRML 219 (319)
Q Consensus 140 ~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll 219 (319)
..+++++||+|||.++++|++++|+||++||+||+|||||||+|+|+++||+.+...++.+|+++||++|+++||||++|
T Consensus 5 ~~s~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~ll 84 (127)
T 1wyq_A 5 SSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLL 84 (127)
T ss_dssp CCCSTHHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCSSCCHHHHHHHHHHHHHTTCCCCCS
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCChhhHHHHHHHHHHHhcccc
Q psy4004 220 DPEDLINTPKPDERAIMTYVSCYYHAFQGAQ 250 (319)
Q Consensus 220 ~~eD~~~~~~pDe~si~~yls~l~~~f~~~~ 250 (319)
+|||++ .+.||+++|||||++||++|++..
T Consensus 85 ~~eDv~-~~~pDeksimtYvs~l~~~~~~~~ 114 (127)
T 1wyq_A 85 DPEDVN-VDQPDEKSIITYVATYYHYFSKMK 114 (127)
T ss_dssp CTTTSC-SSSCCHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHhc-cCCCcHHHHHHHHHHHHHHhhcCC
Confidence 999985 468999999999999999999543
No 16
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=100.00 E-value=6.2e-36 Score=242.78 Aligned_cols=113 Identities=37% Similarity=0.725 Sum_probs=106.5
Q ss_pred hhhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCC
Q psy4004 139 EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRM 218 (319)
Q Consensus 139 ~~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~l 218 (319)
+..+.+++||+|||.++++|++++|+||++||+||+|||||||+|+|+++||+.+...+..+|+++||++|+++||||++
T Consensus 6 ~~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~l 85 (121)
T 2d88_A 6 SGVARSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPI 85 (121)
T ss_dssp CSCSSSCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCTTCHHHHHHHHHHHHHHHTCCCCS
T ss_pred cccCHHHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCccCHHHHHHHHHHHHHHHcCCCCc
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCChhhHHHHHHHHHHHhcccch
Q psy4004 219 LDPEDLINTPKPDERAIMTYVSCYYHAFQGAQQ 251 (319)
Q Consensus 219 l~~eD~~~~~~pDe~si~~yls~l~~~f~~~~~ 251 (319)
|+|||+++++.||+++|||||++||++|++..+
T Consensus 86 L~peD~~~~~~pD~ksimtYvs~l~~~~~~~~p 118 (121)
T 2d88_A 86 MTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGP 118 (121)
T ss_dssp SCHHHHHHSSCCCHHHHHHHHHHHHHHHSSCCS
T ss_pred CCHHHHhccCCCcHHHHHHHHHHHHHHcccCCC
Confidence 999999866789999999999999999996543
No 17
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=100.00 E-value=1.2e-35 Score=239.36 Aligned_cols=108 Identities=32% Similarity=0.571 Sum_probs=103.1
Q ss_pred hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCC
Q psy4004 140 EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRML 219 (319)
Q Consensus 140 ~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll 219 (319)
..+++++||+|||.++++|++++|+||++||+||+|||+|||+|+|+++||+.+...++.+|+++||++|+++||||++|
T Consensus 5 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL 84 (116)
T 1wyl_A 5 SSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVV 84 (116)
T ss_dssp CSSSHHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSGGGCCHHHHHHHHHHHHHHTTCCCCCS
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHhccCCHHHHHHHHHHHHHHHcCCcccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCChhhHHHHHHHHHHHhccc
Q psy4004 220 DPEDLINTPKPDERAIMTYVSCYYHAFQGA 249 (319)
Q Consensus 220 ~~eD~~~~~~pDe~si~~yls~l~~~f~~~ 249 (319)
+|||++.. ||+++|||||++||++|++.
T Consensus 85 ~peD~~~~--~d~ksv~tYvs~l~~~~~~~ 112 (116)
T 1wyl_A 85 SAQAVVAG--SDPLGLIAYLSHFHSAFKSG 112 (116)
T ss_dssp CHHHHHHT--SCHHHHHHHHHHHHHHSCCS
T ss_pred CHHHHhcC--CchhHHHHHHHHHHHHccCC
Confidence 99999853 89999999999999999954
No 18
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=100.00 E-value=3.3e-35 Score=240.53 Aligned_cols=110 Identities=41% Similarity=0.737 Sum_probs=105.3
Q ss_pred hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCC
Q psy4004 140 EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRML 219 (319)
Q Consensus 140 ~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll 219 (319)
..+++++||+|||.++.+|++++|+||++||+||+|||||||+|+|+++||+.+...+..+|+++||++|++++|||++|
T Consensus 5 ~~~~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgip~lL 84 (128)
T 2d87_A 5 SSGIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLL 84 (128)
T ss_dssp SCCHHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSCSSCHHHHHHHHHHHHHHHHCCCCCS
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcCccCHHHHHHHHHHHHHHcCCCCccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCChhhHHHHHHHHHHHhccc
Q psy4004 220 DPEDLINTPKPDERAIMTYVSCYYHAFQGA 249 (319)
Q Consensus 220 ~~eD~~~~~~pDe~si~~yls~l~~~f~~~ 249 (319)
+|+|++++..||+++|||||++||++|++.
T Consensus 85 ~peD~v~~~~pD~ksvmtYvs~l~~~~~~~ 114 (128)
T 2d87_A 85 DTEDMVRLREPDWKCVYTYIQEFYRCLVQK 114 (128)
T ss_dssp CHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhccCCccHHHHHHHHHHHHHHHhhc
Confidence 999998777899999999999999999843
No 19
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=100.00 E-value=1e-35 Score=240.49 Aligned_cols=110 Identities=38% Similarity=0.766 Sum_probs=102.1
Q ss_pred hhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCCC
Q psy4004 140 EMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRML 219 (319)
Q Consensus 140 ~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~ll 219 (319)
+.+++++||+|||.++++|++++|+||++||+||+|||||||+|+|+++||+.+...++.+|++.||++|++++|||++|
T Consensus 6 ~~~~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll 85 (118)
T 1bhd_A 6 QTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLL 85 (118)
T ss_dssp CSHHHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCS
T ss_pred cCCHHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred CcccccCCCCCChhhHHHHHHHHHHHhcccc
Q psy4004 220 DPEDLINTPKPDERAIMTYVSCYYHAFQGAQ 250 (319)
Q Consensus 220 ~~eD~~~~~~pDe~si~~yls~l~~~f~~~~ 250 (319)
+|+|++ .+.||+++|||||++||++|++..
T Consensus 86 ~~eDv~-~~~pD~ksvmtYvs~l~~~~~~~~ 115 (118)
T 1bhd_A 86 DPEDVA-VRLPDKKSIIMYLTSLFEVLPQQV 115 (118)
T ss_dssp CHHHHH-TSCCCHHHHHHHHHHHHHHC----
T ss_pred CHHHhh-cCCCcHHHHHHHHHHHHHHCcCCC
Confidence 999986 468999999999999999999543
No 20
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=237.33 Aligned_cols=111 Identities=34% Similarity=0.701 Sum_probs=104.8
Q ss_pred hhhhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCChhhhHHHHHHHHHHhCCCCCC
Q psy4004 139 EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNPLQNLNTAFDVAEKYLDIPRM 218 (319)
Q Consensus 139 ~~~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~~~n~~~a~~~a~~~lgip~l 218 (319)
+..+++++||+|||.++++|++++|+||++||+||+|||+|||+|+|+++||+.+...+..+|+++||++|+ +||||++
T Consensus 6 ~~~~~~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~~~~~~n~~~af~~a~-~LGi~~l 84 (119)
T 2d89_A 6 SGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFA-SIGISRL 84 (119)
T ss_dssp SCCCCHHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCTTCSHHHHHHHHHHHH-HHTCCCC
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcccCHHHHHHHHHHHHH-HhCCCcc
Confidence 456789999999999999999999999999999999999999999999999999999999999999999996 5999999
Q ss_pred CCcccccCCCCCChhhHHHHHHHHHHHhcccc
Q psy4004 219 LDPEDLINTPKPDERAIMTYVSCYYHAFQGAQ 250 (319)
Q Consensus 219 l~~eD~~~~~~pDe~si~~yls~l~~~f~~~~ 250 (319)
|+|||++++..||+++|||||++||++|++..
T Consensus 85 l~peDi~~~~~pD~ksvmtYvs~l~~~f~~~~ 116 (119)
T 2d89_A 85 LEPSDMVLLAIPDKLTVMTYLYQIRAHFSSGP 116 (119)
T ss_dssp SCHHHHHHSSSCCHHHHHHHHHHHHHHHSCCC
T ss_pred cCHHHHhccCCCcHHHHHHHHHHHHHHccCCC
Confidence 99999987778999999999999999999643
No 21
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=100.00 E-value=6.6e-33 Score=227.96 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=106.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC---CCCCchhhHhhhHHHHHHHH
Q psy4004 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP---DRGKMRFHKIANVNKALDFI 97 (319)
Q Consensus 21 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~~~~r~~~ieNv~~aL~~l 97 (319)
..+++++.+|++|||+|||+||.+.+.+|+||++||+||++|++|+|+++|+++|.. .+|.+|+|++||++.||+|+
T Consensus 14 ~~~~e~~~~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~l 93 (131)
T 2vzc_A 14 DHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELM 93 (131)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999999999999999999999999999998742 46889999999999999999
Q ss_pred HhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhc
Q psy4004 98 ASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ 134 (319)
Q Consensus 98 k~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~ 134 (319)
++.|+++++|+|+||+|||+++||||+|+||++|+..
T Consensus 94 k~~gi~l~~I~~~DIvdGn~kliLgLiW~li~~~~~~ 130 (131)
T 2vzc_A 94 QDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNV 130 (131)
T ss_dssp HHTTCCCCSSCHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCCcCCCCHHHhhCCCHHhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999863
No 22
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=4.8e-30 Score=210.73 Aligned_cols=114 Identities=28% Similarity=0.483 Sum_probs=106.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcccCC--CccchHHHhhhHHHHHHHHHHhcCCCCCCCC-CCCchhhHhhhHHHHHHHH
Q psy4004 21 FLQAVHAKSHLLTFTAWCNSHLRKAGT--AIENIEEDFRNGLKLMLLLEVISGETLPKPD-RGKMRFHKIANVNKALDFI 97 (319)
Q Consensus 21 ~~~~~~~~~q~~~f~~WiN~~L~~~~~--~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~-~~~~r~~~ieNv~~aL~~l 97 (319)
+.+++|+..|+++|++|||++|.+.+. .|.||++||+||++||+|+|+|+|++++++. .|.++++++||++.||+|+
T Consensus 10 ~~~~~~~~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~ 89 (129)
T 2yrn_A 10 KPVIHGLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFL 89 (129)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHHHHHH
Confidence 356789999999999999999998876 4999999999999999999999999998764 5789999999999999999
Q ss_pred HhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhc
Q psy4004 98 ASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ 134 (319)
Q Consensus 98 k~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~ 134 (319)
+..|+++++|+++||+|||.++||||+|+|+++|+.+
T Consensus 90 ~~~gv~~~~i~~~DI~dgn~~~iL~Llw~L~r~~q~~ 126 (129)
T 2yrn_A 90 AAKGINIQGLSAEEIRNGNLKAILGLFFSLSRYKQQQ 126 (129)
T ss_dssp HHHTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHSSC
T ss_pred HHhCCcccCCChhhhhcCCHhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999875
No 23
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=99.89 E-value=6.4e-24 Score=171.48 Aligned_cols=102 Identities=23% Similarity=0.392 Sum_probs=90.5
Q ss_pred hhhhHHHHHHHhhhCC-CCCcccccCC-CCCcchHHHHHHHHhhCCCccccCCC-----CCCChhhhHHHHHHHHHHhCC
Q psy4004 142 TAKEGLLLWCQRKTAP-YKNVNVQNFH-LSFKDGLAFCALIHRHRPELIDYHKL-----SKDNPLQNLNTAFDVAEKYLD 214 (319)
Q Consensus 142 ~~k~~LL~W~q~~~~~-~~~v~V~nfs-~sw~DG~al~aLi~~~~P~li~~~~l-----~~~~~~~n~~~a~~~a~~~lg 214 (319)
..++.|++|||++++. +..++|+||+ +||+||++||+|||.++|+.+||+.+ +..+..+|+++||++|++ +|
T Consensus 7 i~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~Ark-lG 85 (124)
T 1wjo_A 7 GNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARR-IG 85 (124)
T ss_dssp SCCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHH-TC
T ss_pred cCHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHH-cC
Confidence 3467899999999985 4567899999 99999999999999999999999944 445678999999999985 99
Q ss_pred CCCCCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 215 IPRMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 215 ip~ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
||.++.|||++++ ++|+||||+++||++..
T Consensus 86 ~~~~l~pEDIve~---~pK~ilt~va~l~~~~~ 115 (124)
T 1wjo_A 86 ARVYALPEDLVEV---KPKMVMTVFACLMGRGM 115 (124)
T ss_dssp CSCCCCHHHHHHT---CTTTTTHHHHHHHHHSC
T ss_pred CCcccCHHHHhcC---cchhhHHHHHHHHHHHh
Confidence 9999999999975 45999999999999865
No 24
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=99.64 E-value=4.4e-16 Score=125.64 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhhcccCC--CccchH-HHhhhHHHHHHHHHHhcCCCCCCC--CCCC-chhhHhhhHHHHHHHHHhCCce
Q psy4004 30 HLLTFTAWCNSHLRKAGT--AIENIE-EDFRNGLKLMLLLEVISGETLPKP--DRGK-MRFHKIANVNKALDFIASKGVK 103 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~~~--~v~dl~-~dl~DGv~L~~Lle~l~~~~~~~~--~~~~-~r~~~ieNv~~aL~~lk~~gv~ 103 (319)
.++++++|+|.++++.+. .|.|+. .+++||+.+|.|++.+.++.+... ..+. ++.++.+|+++|++++++.|++
T Consensus 8 ~d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG~~ 87 (124)
T 1wjo_A 8 NDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGAR 87 (124)
T ss_dssp CCHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 468899999999997653 699999 999999999999999999998654 3444 7899999999999999999998
Q ss_pred eeecCchhhhccchhhhhhHHHHHHHHhh
Q psy4004 104 LVSIGAEEIVDGNLKMTLGMIWTIILRFA 132 (319)
Q Consensus 104 l~~i~~~dIvdgn~k~iLgLiW~li~~f~ 132 (319)
+ .+.||||+++++|++|+++|+|+.++.
T Consensus 88 ~-~l~pEDIve~~pK~ilt~va~l~~~~~ 115 (124)
T 1wjo_A 88 V-YALPEDLVEVKPKMVMTVFACLMGRGM 115 (124)
T ss_dssp C-CCCHHHHHHTCTTTTTHHHHHHHHHSC
T ss_pred c-ccCHHHHhcCcchhhHHHHHHHHHHHh
Confidence 6 799999999999999999999998753
No 25
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.31 E-value=1.6e-11 Score=103.67 Aligned_cols=136 Identities=23% Similarity=0.320 Sum_probs=100.0
Q ss_pred HHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCC-CCCchhhHhhhHHHHHHHHHhCCceeeec-Cc
Q psy4004 32 LTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPD-RGKMRFHKIANVNKALDFIASKGVKLVSI-GA 109 (319)
Q Consensus 32 ~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~-~~~~r~~~ieNv~~aL~~lk~~gv~l~~i-~~ 109 (319)
.....||+..|...-..-.++.+.|+||++||+|++.+.+..+++.. .+.+.+++++|++..|++++..|++-..+ .+
T Consensus 14 ~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~ 93 (159)
T 1p2x_A 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFEL 93 (159)
T ss_dssp HHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGCCCH
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCcccccCH
Confidence 67899999998764333469999999999999999999999998764 36788999999999999999999987665 89
Q ss_pred hhhhccc-hhhhhhHHHHHHHHhhhcccchh------hhhhhhHHHHHHHhhhCCCCCcccccCCC
Q psy4004 110 EEIVDGN-LKMTLGMIWTIILRFAIQDISVE------EMTAKEGLLLWCQRKTAPYKNVNVQNFHL 168 (319)
Q Consensus 110 ~dIvdgn-~k~iLgLiW~li~~f~i~~i~~~------~~~~k~~LL~W~q~~~~~~~~v~V~nfs~ 168 (319)
.|+++|. ...++.-+-++.....-..+.+. ...-.+.=|+|++..+..+ |+++.||+.
T Consensus 94 ~DL~e~kn~~~Vi~~L~aL~~~~~~~g~~p~~~~~~~~~~fseeql~~~~~~l~~~-g~~~~~f~~ 158 (159)
T 1p2x_A 94 TDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDEDVSIIVRRLRQS-NVILPNFKA 158 (159)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHHTTTSSCCCCCCCTTCCCCHHHHHHHHHHHHHC-CCCCCCGGG
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhCCCCCCchhhhccCCCCHHHHHHHHHHHHHc-CCCCCCcCC
Confidence 9999984 44444444444444322222111 0111222399999999766 778999964
No 26
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.30 E-value=1.7e-11 Score=107.34 Aligned_cols=146 Identities=22% Similarity=0.289 Sum_probs=101.6
Q ss_pred HhHHHHHH-HHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC-CCCCchhhHhhhHHHHHHHHH
Q psy4004 21 FLQAVHAK-SHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVNKALDFIA 98 (319)
Q Consensus 21 ~~~~~~~~-~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~-~~~~~r~~~ieNv~~aL~~lk 98 (319)
+....++. ..++.+..||+..|...-....+|.+.|+||++||+|++.+.+..+++. ..+.+.+++++|++..|++++
T Consensus 46 k~~~~ye~l~~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~ 125 (203)
T 1p5s_A 46 ETLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIH 125 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHH
Confidence 44556666 3467899999999876433457999999999999999999999999876 456778999999999999999
Q ss_pred hCCceeee-cCchhhhccc-hhhhhhHHHHHHHHhhhcc----cchh---hhhhhhHHHHHHHhhhCCCCCcccccCCC
Q psy4004 99 SKGVKLVS-IGAEEIVDGN-LKMTLGMIWTIILRFAIQD----ISVE---EMTAKEGLLLWCQRKTAPYKNVNVQNFHL 168 (319)
Q Consensus 99 ~~gv~l~~-i~~~dIvdgn-~k~iLgLiW~li~~f~i~~----i~~~---~~~~k~~LL~W~q~~~~~~~~v~V~nfs~ 168 (319)
..|++..+ +.+.|+++|. ...++.-|-++.....-.. +... ..-.++.|.. +|..+..+ |+++.||+.
T Consensus 126 ~~Gvp~~~lF~t~DL~e~kn~~~Vi~~L~aL~~~a~~~g~~p~l~~l~~~~~Fseeql~~-~n~~l~q~-G~~~~~F~~ 202 (203)
T 1p5s_A 126 GIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDEDVSI-IVRRLRQS-NVILPNFKA 202 (203)
T ss_dssp HTTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHTTSSCCCCCCCTTCCCCHHHHHH-HHHHHHHC-CCCCCCSTT
T ss_pred HcCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhcCCCCchhhhcccCCCCHHHHHH-HHHHHHHc-CCCCCCCCC
Confidence 99998777 5999999985 3333333333333221111 1100 1112333444 67766544 677888864
No 27
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.24 E-value=1.3e-11 Score=101.61 Aligned_cols=104 Identities=13% Similarity=0.258 Sum_probs=85.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHhC
Q psy4004 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASK 100 (319)
Q Consensus 21 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~~ 100 (319)
+++.++....+..+..||+..|... + -.+|.+.|+||++||+|++.+.+..+++...+.+.+++++|++..|++++..
T Consensus 9 k~~~ky~~~~~~e~~~WIe~~l~~~-~-~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~ 86 (136)
T 1wyp_A 9 KLAQKYDHQREQELREWIEGVTGRR-I-GNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKY 86 (136)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTCCC-C-CSCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHhCCC-C-cHHHHHHHccHHhHHHHHHhhCCCCcccccccccchHHHHHHHHHHHHHHHc
Confidence 3455666667789999999998753 2 3699999999999999999999999988777788999999999999999999
Q ss_pred Cceeee-cCchhhhcc-chhhhhhHHHH
Q psy4004 101 GVKLVS-IGAEEIVDG-NLKMTLGMIWT 126 (319)
Q Consensus 101 gv~l~~-i~~~dIvdg-n~k~iLgLiW~ 126 (319)
|++..+ +.+.|+++| |...++.-+-.
T Consensus 87 Gv~~~~lF~~~DL~e~kn~~~V~~cL~a 114 (136)
T 1wyp_A 87 GVKPHDIFEANDLFENTNHTQVQSTLLA 114 (136)
T ss_dssp TCCGGGCCCHHHHHSCSCSHHHHHHHHH
T ss_pred CCCcccccCchHHhcCCCHHHHHHHHHH
Confidence 998666 899999997 44444433333
No 28
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.21 E-value=2.9e-11 Score=95.55 Aligned_cols=89 Identities=18% Similarity=0.291 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHhCCceeee-cCc
Q psy4004 31 LLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVS-IGA 109 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~~gv~l~~-i~~ 109 (319)
++.+..||+..+...- -.++.+.|+||++||+|++.+.++.+++...+.+.+++++|++..|++++..|++..+ +.+
T Consensus 5 e~e~~~WIe~~l~~~~--~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~ 82 (108)
T 1h67_A 5 ERQLRVWIEGATGRRI--GDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEA 82 (108)
T ss_dssp SHHHHHHHHHHHSCCC--CSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSCGGGSCCH
T ss_pred HHHHHHHHHHHhCCCC--cHHHHHHHccHHHHHHHHHHhCCCCcccccccccchHHHHHHHHHHHHHHHcCCCcccccCh
Confidence 4568999999987532 3699999999999999999999999988777778899999999999999999998766 899
Q ss_pred hhhhcc-chhhhh
Q psy4004 110 EEIVDG-NLKMTL 121 (319)
Q Consensus 110 ~dIvdg-n~k~iL 121 (319)
.|+++| |...++
T Consensus 83 ~DL~e~kn~~~V~ 95 (108)
T 1h67_A 83 NDLFENTNHTQVQ 95 (108)
T ss_dssp HHHHHTCCSHHHH
T ss_pred hHHHhCCChHHHH
Confidence 999997 444444
No 29
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=101.42 Aligned_cols=106 Identities=14% Similarity=0.278 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHhCC
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKG 101 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~~g 101 (319)
++.++....++.+..||+..+... + -.+|.+.|+||++||+|++.+.+..+++...+.+.+++++|++..|++++..|
T Consensus 10 ~~~ky~~~~~~e~~~WIe~~l~~~-i-~~~l~~~L~DGvvLCkL~N~l~P~~v~kin~~~~~f~~~eNI~~FL~a~~~~G 87 (146)
T 1wyn_A 10 LLSKYDPQKEAELRTWIEGLTGLS-I-GPDFQKGLKDGTILCTLMNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYG 87 (146)
T ss_dssp CCSCCCTTHHHHHHHHHHHHHCCC-C-CSCHHHHHHTTSHHHHHHHHHCTTSCSCCCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHccCCHHHHHHHHHHHHHHhCCC-C-cHHHHHHHccHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHcC
Confidence 444555556789999999998753 2 46999999999999999999999999887777889999999999999999999
Q ss_pred ceeee-cCchhhhcc-chhhhhhHHHHHHH
Q psy4004 102 VKLVS-IGAEEIVDG-NLKMTLGMIWTIIL 129 (319)
Q Consensus 102 v~l~~-i~~~dIvdg-n~k~iLgLiW~li~ 129 (319)
++..+ +.+.|+++| |...++.-|-+|-.
T Consensus 88 v~~~~lF~~~DL~e~kn~~~V~~cL~aL~~ 117 (146)
T 1wyn_A 88 MNPVDLFEANDLFESGNMTQVQVSLLALAG 117 (146)
T ss_dssp CCSSSCCCHHHHHTCSCSHHHHHHHHHHHH
T ss_pred CCcccccChhHHHhcCChHHHHHHHHHHHH
Confidence 98766 899999997 44555444444433
No 30
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.7e-11 Score=100.97 Aligned_cols=95 Identities=16% Similarity=0.286 Sum_probs=81.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcccCCCc-----cchHHHhhhHHHHHHHHHHhcC---CCCCCCCCCCchhhHhhhHHH
Q psy4004 21 FLQAVHAKSHLLTFTAWCNSHLRKAGTAI-----ENIEEDFRNGLKLMLLLEVISG---ETLPKPDRGKMRFHKIANVNK 92 (319)
Q Consensus 21 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~v-----~dl~~dl~DGv~L~~Lle~l~~---~~~~~~~~~~~r~~~ieNv~~ 92 (319)
+++.++....+..+..||+..|... +.. .+|.+.|+||++||+|++.+.+ ..+++.+.+.+.+++++|++.
T Consensus 9 k~~~ky~~~~e~e~~~WIe~~l~~~-l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~~~~~F~~~eNI~~ 87 (155)
T 1wym_A 9 KIEKQYDADLEQILIQWITTQCRKD-VGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQ 87 (155)
T ss_dssp SCCCSCCHHHHHHHHHHHHHHSSSC-CCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCCCCCHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHhCCC-CCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCcccCCCccccHHHHHHH
Confidence 4455666667789999999998764 222 6999999999999999999999 999887777889999999999
Q ss_pred HHHHHHhCCceeeec-Cchhhhccc
Q psy4004 93 ALDFIASKGVKLVSI-GAEEIVDGN 116 (319)
Q Consensus 93 aL~~lk~~gv~l~~i-~~~dIvdgn 116 (319)
.|++++..|++-..+ .+.|+++|.
T Consensus 88 FL~ac~~~Gv~~~~lF~t~DL~e~k 112 (155)
T 1wym_A 88 FLQAAERYGINTTDIFQTVDLWEGK 112 (155)
T ss_dssp HHHHHHHHTCCTTTCCCHHHHHTCS
T ss_pred HHHHHHHcCCCccccCChHHHHhcC
Confidence 999999999986665 899999974
No 31
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.09 E-value=2.1e-10 Score=95.21 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhhhcccCC----CccchHHHhhhHHHHHHHHHHhcC---CCCC-CCCCCCchhhHhhhHHHHHHHH
Q psy4004 26 HAKSHLLTFTAWCNSHLRKAGT----AIENIEEDFRNGLKLMLLLEVISG---ETLP-KPDRGKMRFHKIANVNKALDFI 97 (319)
Q Consensus 26 ~~~~q~~~f~~WiN~~L~~~~~----~v~dl~~dl~DGv~L~~Lle~l~~---~~~~-~~~~~~~r~~~ieNv~~aL~~l 97 (319)
+...++..+..||+..|...-. ...+|.+.|+||++||+|++.+.+ ..++ +.+.+.+.+++++|++..|+++
T Consensus 6 y~~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~~~f~~~eNI~~FL~ac 85 (144)
T 1ujo_A 6 SGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAA 85 (144)
T ss_dssp SCCHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCCchhHHHHHHHHHHHHH
Confidence 3344567899999999876421 247999999999999999999999 7787 6666778999999999999999
Q ss_pred HhCCceeeec-Cchhhhccc
Q psy4004 98 ASKGVKLVSI-GAEEIVDGN 116 (319)
Q Consensus 98 k~~gv~l~~i-~~~dIvdgn 116 (319)
+..|++-..+ .+.|+++|.
T Consensus 86 ~~~Gv~~~~lF~t~DL~e~k 105 (144)
T 1ujo_A 86 EDYGVIKTDMFQTVDLYEGK 105 (144)
T ss_dssp HHHTCCSSSCCCHHHHHTCS
T ss_pred HHcCcCccccCChhHHHhcC
Confidence 9999986665 899999984
No 32
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=99.05 E-value=7.3e-10 Score=90.46 Aligned_cols=101 Identities=17% Similarity=0.363 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCC-----CChhhhHHHHHHHHHHhCCCC
Q psy4004 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSK-----DNPLQNLNTAFDVAEKYLDIP 216 (319)
Q Consensus 142 ~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~-----~~~~~n~~~a~~~a~~~lgip 216 (319)
..++.+.+|+|.+++.+ ++.|+|+.++++||+.||.|+....|+.+++..... ....+|++.|++.+++ .||.
T Consensus 22 ~q~ktft~WiN~~L~~~-~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk~-~gi~ 99 (131)
T 2vzc_A 22 VVKKTLITFVNKHLNKL-NLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQD-GGLE 99 (131)
T ss_dssp HHHHHHHHHHHHHHGGG-TCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHHHHHHc-CCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHHH-cCCC
Confidence 45788999999998776 578999999999999999999999999887654432 2458999999999997 8997
Q ss_pred C-CCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 217 R-MLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 217 ~-ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
. -+.|+|++++ +.+.++..+.+++..|.
T Consensus 100 l~~I~~~DIvdG---n~kliLgLiW~li~~~~ 128 (131)
T 2vzc_A 100 KPKPRPEDIVNC---DLKSTLRVLYNLFTKYR 128 (131)
T ss_dssp CCSSCHHHHHTT---CHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHhhCC---CHHhHHHHHHHHHHHHh
Confidence 5 4999999975 48999999999998886
No 33
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.6e-10 Score=90.19 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHhCCceeeecCc
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVKLVSIGA 109 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~~gv~l~~i~~ 109 (319)
++.+.+|+|.+++.. +..|+|+.++++||..+|.|+..+.++.++.. .......++|++.|++.++..||+.. +.|
T Consensus 11 ~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~--~l~~~~~~~n~~~af~~a~~LGi~~l-l~p 87 (119)
T 2d89_A 11 SQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYK--SLNPQDIKENNKKAYDGFASIGISRL-LEP 87 (119)
T ss_dssp HHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGG--GCCTTCSHHHHHHHHHHHHHHTCCCC-SCH
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChh--hhcccCHHHHHHHHHHHHHHhCCCcc-cCH
Confidence 567899999999876 57799999999999999999999999987542 23334678999999999988999754 799
Q ss_pred hhhhcc---chhhhhhHHHHHHHHhhh
Q psy4004 110 EEIVDG---NLKMTLGMIWTIILRFAI 133 (319)
Q Consensus 110 ~dIvdg---n~k~iLgLiW~li~~f~i 133 (319)
+||+++ +.+.++..+=+++.+|.-
T Consensus 88 eDi~~~~~pD~ksvmtYvs~l~~~f~~ 114 (119)
T 2d89_A 88 SDMVLLAIPDKLTVMTYLYQIRAHFSS 114 (119)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHccC
Confidence 999987 889999999888888753
No 34
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.02 E-value=9.7e-10 Score=88.50 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhhcccC--C----CccchHHHhhhHHHHHHHHHHhcCCCCCCC-CCCCchhhHhhhHHHHHHHHHhCCce
Q psy4004 31 LLTFTAWCNSHLRKAG--T----AIENIEEDFRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVNKALDFIASKGVK 103 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~~--~----~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~-~~~~~r~~~ieNv~~aL~~lk~~gv~ 103 (319)
++.+..|||..+.... . ..+.|.+.|+||++||+|++.+.+..+++. ..+.+.+++++|++..|++++..|+
T Consensus 8 e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~- 86 (121)
T 1wyr_A 8 EEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQV- 86 (121)
T ss_dssp HHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCC-
Confidence 4678999999854221 1 122378999999999999999999999876 4567789999999999999999887
Q ss_pred eeecCchhhhcc-chhhhhhHH
Q psy4004 104 LVSIGAEEIVDG-NLKMTLGMI 124 (319)
Q Consensus 104 l~~i~~~dIvdg-n~k~iLgLi 124 (319)
..+.+.|+++| |...++.-+
T Consensus 87 -~~F~~~DL~e~kn~~~V~~cL 107 (121)
T 1wyr_A 87 -EIFDPDDLYSGVNFSKVLSTL 107 (121)
T ss_dssp -CCCCHHHHHTCSCHHHHHHHH
T ss_pred -CccCHHHHHcCCCHHHHHHHH
Confidence 56899999998 444444333
No 35
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=98.99 E-value=8.2e-10 Score=88.29 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHh-CCceeeecC
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIAS-KGVKLVSIG 108 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~-~gv~l~~i~ 108 (319)
++.+.+|+|.+++.. +..|+|+.++++||..+|.|+..+.+..++.. ........+|++.|++.+++ .||+-. +.
T Consensus 9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~--~l~~~~~~~n~~~af~~Ae~~lgi~~l-L~ 85 (116)
T 1wyl_A 9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPS--ELQGLGALEATAWALKVAENELGITPV-VS 85 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCS--SGGGCCHHHHHHHHHHHHHHTTCCCCC-SC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHH--HhccCCHHHHHHHHHHHHHHHcCCccc-cC
Confidence 577899999999876 57899999999999999999999999988642 34455789999999999987 899744 79
Q ss_pred chhhhcc-chhhhhhHHHHHHHHhh
Q psy4004 109 AEEIVDG-NLKMTLGMIWTIILRFA 132 (319)
Q Consensus 109 ~~dIvdg-n~k~iLgLiW~li~~f~ 132 (319)
|+||+++ +.+.++..+=+++..|.
T Consensus 86 peD~~~~~d~ksv~tYvs~l~~~~~ 110 (116)
T 1wyl_A 86 AQAVVAGSDPLGLIAYLSHFHSAFK 110 (116)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCchhHHHHHHHHHHHHcc
Confidence 9999998 99999988888887774
No 36
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=98.96 E-value=1e-09 Score=95.17 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=84.3
Q ss_pred ccCCchhhhHHHHHhHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCC--CC--------
Q psy4004 8 RPQRSASVGRIITFLQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP--KP-------- 77 (319)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~--~~-------- 77 (319)
|...++-......+.+.++...+ ..+..||+..+...-....+|.+.|+||++||+|++.+.+..++ +.
T Consensus 5 ~~~~~~md~~~~~k~a~~y~~~~-~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~ 83 (190)
T 2rr8_A 5 SLTAEEMDERRRQNVAYEYLCHL-EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRY 83 (190)
T ss_dssp CCCCCCSSSSCSCHHHHHHHHHH-HHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHH
T ss_pred ccChhhhhHHHHHHHHHhhcHHH-HHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccc
Confidence 44444444445556677787777 89999999998754333468999999999999999999999874 21
Q ss_pred CCCCchhhHhhhHHHHHHHHHhCCceeeec-Cchhhhccc
Q psy4004 78 DRGKMRFHKIANVNKALDFIASKGVKLVSI-GAEEIVDGN 116 (319)
Q Consensus 78 ~~~~~r~~~ieNv~~aL~~lk~~gv~l~~i-~~~dIvdgn 116 (319)
+.+.+.+++++|++..|++++..|++-..+ .+.|+++|.
T Consensus 84 ~~~~~~f~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~k 123 (190)
T 2rr8_A 84 KATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRK 123 (190)
T ss_dssp HHTCCCSSTHHHHHHHHHGGGGTTCCSTTCCCHHHHTCTT
T ss_pred cCCCCcchHHHHHHHHHHHHHHcCCCccccCCHHHHHhcC
Confidence 124567899999999999999999986654 899999974
No 37
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=98.95 E-value=1.4e-09 Score=88.32 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHh-CCceeeecC
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIAS-KGVKLVSIG 108 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~-~gv~l~~i~ 108 (319)
++.+.+|+|.++... +..|+|+.++++||..+|.|+..+.+..++.. ........+|++.|++.+++ .||+-. +.
T Consensus 9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~--~l~~~~~~~n~~~af~~Ae~~lgip~l-L~ 85 (128)
T 2d87_A 9 KQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYG--QLSPQNRRQNFEVAFSSAETHADCPQL-LD 85 (128)
T ss_dssp HHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCST--TSCSSCHHHHHHHHHHHHHHHHCCCCC-SC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHH--HcCccCHHHHHHHHHHHHHHcCCCCcc-cC
Confidence 578899999999876 67899999999999999999999999988543 33445779999999999988 688644 89
Q ss_pred chhhhccc---hhhhhhHHHHHHHHhhhcc
Q psy4004 109 AEEIVDGN---LKMTLGMIWTIILRFAIQD 135 (319)
Q Consensus 109 ~~dIvdgn---~k~iLgLiW~li~~f~i~~ 135 (319)
|+||++++ .+.++..+=+++..|.-.+
T Consensus 86 peD~v~~~~pD~ksvmtYvs~l~~~~~~~~ 115 (128)
T 2d87_A 86 TEDMVRLREPDWKCVYTYIQEFYRCLVQKG 115 (128)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHHhhcc
Confidence 99999886 7999999888888885444
No 38
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=98.94 E-value=4.3e-09 Score=91.31 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCC--CC--------CCCCchhhHhhhHH
Q psy4004 22 LQAVHAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP--KP--------DRGKMRFHKIANVN 91 (319)
Q Consensus 22 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~--~~--------~~~~~r~~~ieNv~ 91 (319)
...++....+ ....||+..+...-....+|.+.|+||++||+|++.|.++.+| +. +.+.+.++.++|++
T Consensus 41 ~a~eyl~~~~-e~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~ 119 (193)
T 3i6x_A 41 VAYEYLCHLE-EAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI 119 (193)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHH
Confidence 3334444443 7889999998764333458999999999999999999999885 21 13467899999999
Q ss_pred HHHHHHHhCCceeee-cCchhhhcc-chhhhh
Q psy4004 92 KALDFIASKGVKLVS-IGAEEIVDG-NLKMTL 121 (319)
Q Consensus 92 ~aL~~lk~~gv~l~~-i~~~dIvdg-n~k~iL 121 (319)
..|++++..|++-.. +.+.|+++| |...++
T Consensus 120 ~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~V~ 151 (193)
T 3i6x_A 120 QWLNAMDEIGLPKIFYPETTDIYDRKNMPRCI 151 (193)
T ss_dssp HHHHHHHHHTCCGGGCCCHHHHHSCSCHHHHH
T ss_pred HHHHHHHHcCCCcccCCCcHHHhcCCCHHHHH
Confidence 999999999998655 489999998 344333
No 39
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=98.94 E-value=1.9e-09 Score=86.75 Aligned_cols=100 Identities=12% Similarity=0.198 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHh-CCceeeecC
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIAS-KGVKLVSIG 108 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~-~gv~l~~i~ 108 (319)
++.+.+|+|.+++.. +..|+|+.++++||..+|.|+..+.+..++.. ........+|++.|++.+++ .||+-. +.
T Consensus 11 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~--~l~~~~~~~n~~~af~~Ae~~lgi~~l-L~ 87 (121)
T 2d88_A 11 SSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFD--SLDEQNVEKNNQLAFDIAEKELGISPI-MT 87 (121)
T ss_dssp SCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTT--TSCTTCHHHHHHHHHHHHHHHTCCCCS-SC
T ss_pred HHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHH--HcCccCHHHHHHHHHHHHHHHcCCCCc-CC
Confidence 356789999999876 67899999999999999999999999988542 33445679999999999985 999744 79
Q ss_pred chhhhcc---chhhhhhHHHHHHHHhhh
Q psy4004 109 AEEIVDG---NLKMTLGMIWTIILRFAI 133 (319)
Q Consensus 109 ~~dIvdg---n~k~iLgLiW~li~~f~i 133 (319)
|+||+++ +.+.++..+=+++.+|.-
T Consensus 88 peD~~~~~~pD~ksimtYvs~l~~~~~~ 115 (121)
T 2d88_A 88 GKEMASVGEPDKLSMVMYLTQFYEMFKD 115 (121)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHccc
Confidence 9999985 889999988888887743
No 40
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=98.91 E-value=6.1e-09 Score=84.34 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=71.4
Q ss_pred HHHHHHHHHhh--hcccC---CCccch-HHHhhhHHHHHHHHHHhcCCCCCCC-CCCCchhhHhhhHHHHHHHHHh-CCc
Q psy4004 31 LLTFTAWCNSH--LRKAG---TAIENI-EEDFRNGLKLMLLLEVISGETLPKP-DRGKMRFHKIANVNKALDFIAS-KGV 102 (319)
Q Consensus 31 ~~~f~~WiN~~--L~~~~---~~v~dl-~~dl~DGv~L~~Lle~l~~~~~~~~-~~~~~r~~~ieNv~~aL~~lk~-~gv 102 (319)
+..+.+||+.. |.... ..-.++ .+.|+||++||+|++.+.++.+++. ..+.+.+++++|++..|++++. .|+
T Consensus 14 ~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g~ 93 (126)
T 2l3g_A 14 AEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRL 93 (126)
T ss_dssp HHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCCC
Confidence 46789999998 44322 123466 4999999999999999999999876 4577789999999999999999 886
Q ss_pred eeeecCchhhhcc-chhhhh
Q psy4004 103 KLVSIGAEEIVDG-NLKMTL 121 (319)
Q Consensus 103 ~l~~i~~~dIvdg-n~k~iL 121 (319)
..+.+.|+++| |...++
T Consensus 94 --~lF~t~DL~e~kn~~~V~ 111 (126)
T 2l3g_A 94 --ETFDANDLYQGQNFNKVL 111 (126)
T ss_dssp --CCCCHHHHHTTSCHHHHH
T ss_pred --CccCHHHHHhCCCHHHHH
Confidence 56899999997 434333
No 41
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=98.88 E-value=2.1e-09 Score=98.43 Aligned_cols=98 Identities=19% Similarity=0.311 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhhcccCCC-ccchHHHhhhHHHHHHHHHHhcCCCCCC-------CCCCCchhhHhhhHHHHHHHHHhCC
Q psy4004 30 HLLTFTAWCNSHLRKAGTA-IENIEEDFRNGLKLMLLLEVISGETLPK-------PDRGKMRFHKIANVNKALDFIASKG 101 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~~~~-v~dl~~dl~DGv~L~~Lle~l~~~~~~~-------~~~~~~r~~~ieNv~~aL~~lk~~g 101 (319)
.++.+.+|+|.++...|.. |+|+.++++||+.++.|+..+.|..+|. ...+.+.....+|+..|++.+++.|
T Consensus 169 ~~~~LL~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lG 248 (275)
T 1aoa_A 169 PEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLG 248 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcC
Confidence 3678999999999887765 9999999999999999999999985532 1234455678999999999999999
Q ss_pred ceeeecCchhhhccchhhhhhHHHHHH
Q psy4004 102 VKLVSIGAEEIVDGNLKMTLGMIWTII 128 (319)
Q Consensus 102 v~l~~i~~~dIvdgn~k~iLgLiW~li 128 (319)
++. -+.|+||+++++|+++.++-+|+
T Consensus 249 i~~-~l~peDi~~~~~k~i~tyva~Lf 274 (275)
T 1aoa_A 249 CRQ-FVTPADVVSGNPKLNLAFVANLF 274 (275)
T ss_dssp CCC-SCCHHHHHTTCHHHHHHHHHHHH
T ss_pred CCC-cCCHHHcCCCChhHHHHHHHHHh
Confidence 974 48999999999999998887765
No 42
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=98.82 E-value=6.1e-09 Score=82.26 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHH-hCCceeeecC
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIA-SKGVKLVSIG 108 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk-~~gv~l~~i~ 108 (319)
++.+.+|+|.+++.. +..|+|+.++++||..+|.|+..+.++.++.. ........+|++.|++.++ ..||+-. +.
T Consensus 5 k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~--~l~~~~~~~n~~~af~~Ae~~lgi~~l-l~ 81 (109)
T 1bkr_A 5 KDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFD--KLKKSNAHYNLQNAFNLAEQHLGLTKL-LD 81 (109)
T ss_dssp HHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGG--GCCTTCHHHHHHHHHHHHHHHHCCCCC-CC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHH--HcCcCCHHHHHHHHHHHHHHHcCCCcc-CC
Confidence 678999999998875 57899999999999999999999999887542 2334567999999999997 5899744 78
Q ss_pred chhhhccc--hhhhhhHHHHHHHHh
Q psy4004 109 AEEIVDGN--LKMTLGMIWTIILRF 131 (319)
Q Consensus 109 ~~dIvdgn--~k~iLgLiW~li~~f 131 (319)
|+|++.++ .+.++..+=+++..|
T Consensus 82 ~eDv~~~~pD~ksi~tYvs~~~~~f 106 (109)
T 1bkr_A 82 PEDISVDHPDEKSIITYVVTYYHYF 106 (109)
T ss_dssp HHHHSSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHh
Confidence 99998875 588888877777666
No 43
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=4.6e-09 Score=85.44 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=83.2
Q ss_pred hhhhhHHHHHHHhhhCCCC-CcccccCCCCCcchHHHHHHHHhhCCCccccCC---CCCCChhhhHHHHHHHHHHhCCCC
Q psy4004 141 MTAKEGLLLWCQRKTAPYK-NVNVQNFHLSFKDGLAFCALIHRHRPELIDYHK---LSKDNPLQNLNTAFDVAEKYLDIP 216 (319)
Q Consensus 141 ~~~k~~LL~W~q~~~~~~~-~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~---l~~~~~~~n~~~a~~~a~~~lgip 216 (319)
...+..+..|++.++.... ...|.||.++++||..||.|+....|+.++.-. ...-...+|+..|++.++. .|++
T Consensus 17 ~~q~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~~~-~gv~ 95 (129)
T 2yrn_A 17 EDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAA-KGIN 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHHHHHHHH-hCCc
Confidence 3456789999999886431 125899999999999999999999999886211 1223458999999999986 8998
Q ss_pred C-CCCcccccCCCCCChhhHHHHHHHHHHHhcc
Q psy4004 217 R-MLDPEDLINTPKPDERAIMTYVSCYYHAFQG 248 (319)
Q Consensus 217 ~-ll~~eD~~~~~~pDe~si~~yls~l~~~f~~ 248 (319)
. -+.++|++++ +.+.++..+..++.+|..
T Consensus 96 ~~~i~~~DI~dg---n~~~iL~Llw~L~r~~q~ 125 (129)
T 2yrn_A 96 IQGLSAEEIRNG---NLKAILGLFFSLSRYKQQ 125 (129)
T ss_dssp CTTCCHHHHHHT---CHHHHHHHHHHHHHHHSS
T ss_pred ccCCChhhhhcC---CHhHHHHHHHHHHHHHhh
Confidence 6 4899999864 589999999999998884
No 44
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=98.76 E-value=1.1e-08 Score=82.92 Aligned_cols=99 Identities=14% Similarity=0.245 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHH-hCCceeeecC
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIA-SKGVKLVSIG 108 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk-~~gv~l~~i~ 108 (319)
++.+.+|+|.+++.. +..|+|+.++++||..+|.|+..+.++.++.. ........+|++.|++.++ ..||+-. +.
T Consensus 9 k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~--~l~~~~~~~n~~~af~~Ae~~Lgi~~l-l~ 85 (127)
T 1wyq_A 9 KDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFE--SLKKCNAHYNLQNAFNLAEKELGLTKL-LD 85 (127)
T ss_dssp THHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTT--TSCSSCCHHHHHHHHHHHHHTTCCCCC-SC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHH--HhCcCCHHHHHHHHHHHHHHHcCCCcc-cC
Confidence 467899999998875 57899999999999999999999999988643 2333467899999999998 5899744 78
Q ss_pred chhhhccc--hhhhhhHHHHHHHHhh
Q psy4004 109 AEEIVDGN--LKMTLGMIWTIILRFA 132 (319)
Q Consensus 109 ~~dIvdgn--~k~iLgLiW~li~~f~ 132 (319)
|+|++.++ .+.++..+=+++.+|.
T Consensus 86 ~eDv~~~~pDeksimtYvs~l~~~~~ 111 (127)
T 1wyq_A 86 PEDVNVDQPDEKSIITYVATYYHYFS 111 (127)
T ss_dssp TTTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHhh
Confidence 99998875 6888888888887774
No 45
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=98.76 E-value=4.8e-09 Score=84.05 Aligned_cols=98 Identities=11% Similarity=0.199 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHH-hCCceeeecC
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIA-SKGVKLVSIG 108 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk-~~gv~l~~i~ 108 (319)
++.+.+|+|.++... +..|+|+.++++||..+|.|+..+.++.++.. ........+|++.|++.++ ..||+-. +.
T Consensus 10 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~--~l~~~~~~~n~~~af~~Ae~~lgi~~l-l~ 86 (118)
T 1bhd_A 10 EKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWD--KVVKMSPIERLEHAFSKAQTYLGIEKL-LD 86 (118)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHH--HHHHSCHHHHHHHHHHHHHHHHCCCCC-SC
T ss_pred HHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHH--HhCcCCHHHHHHHHHHHHHHHcCCCcc-cC
Confidence 678999999999876 47899999999999999999999998877532 2223456899999999997 6899744 78
Q ss_pred chhhhcc--chhhhhhHHHHHHHHh
Q psy4004 109 AEEIVDG--NLKMTLGMIWTIILRF 131 (319)
Q Consensus 109 ~~dIvdg--n~k~iLgLiW~li~~f 131 (319)
|+|++.+ +.+.++..+=+++..|
T Consensus 87 ~eDv~~~~pD~ksvmtYvs~l~~~~ 111 (118)
T 1bhd_A 87 PEDVAVRLPDKKSIIMYLTSLFEVL 111 (118)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHC
Confidence 9999987 6688888887777766
No 46
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.64 E-value=5e-08 Score=88.30 Aligned_cols=101 Identities=18% Similarity=0.290 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHh-CCceeeec
Q psy4004 30 HLLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIAS-KGVKLVSI 107 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~-~gv~l~~i 107 (319)
.++.+.+|+|..++.. +..|+|+.++++||..+|.|+..+.|..++.. ....-...+|+..|++.+++ .|++.. +
T Consensus 141 ~~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~--~l~~~~~~~n~~~a~~~A~~~lGi~~~-l 217 (254)
T 1wku_A 141 AKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYA--KLRKDDPIGNLNTAFEVAEKYLDIPKM-L 217 (254)
T ss_dssp HHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGG--GCCTTCHHHHHHHHHHHHHHHSCCCCC-S
T ss_pred HHHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCccccc--ccCcCCHHHHHHHHHHHHHHHcCCCCc-C
Confidence 3568999999998764 56799999999999999999999999988642 23345689999999999986 899853 8
Q ss_pred Cchhhhcc---chhhhhhHHHHHHHHhhh
Q psy4004 108 GAEEIVDG---NLKMTLGMIWTIILRFAI 133 (319)
Q Consensus 108 ~~~dIvdg---n~k~iLgLiW~li~~f~i 133 (319)
.|+||+++ +.+.++..+=+++.+|.-
T Consensus 218 ~peDiv~~~~pD~k~imtyva~l~~~~~~ 246 (254)
T 1wku_A 218 DAEDIVNTPKPDEKAIMTYVSCFYHAFAG 246 (254)
T ss_dssp CHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 99999997 679999999988888754
No 47
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=98.62 E-value=2.1e-08 Score=90.23 Aligned_cols=100 Identities=12% Similarity=0.193 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHHh-CCceeeec
Q psy4004 30 HLLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIAS-KGVKLVSI 107 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk~-~gv~l~~i 107 (319)
.++.+.+|+|.++... +..|+|+.++++||..+|.|+..+.|..++.. ........+|+..|++.+++ .|++.. +
T Consensus 134 ~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~--~l~~~~~~~n~~~a~~~a~~~lGi~~~-l 210 (245)
T 1sh5_A 134 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMN--KVYRQTNLENLDQAFSVAERDLGVTRL-L 210 (245)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHH--HHHHSCHHHHHHHHHHHHHHHHCCCCC-C
T ss_pred HHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHH--HcccCCHHHHHHHHHHHHHHhCCCCcc-C
Confidence 4568999999999875 67899999999999999999999999887642 12234578999999999986 999844 8
Q ss_pred Cchhhhcc--chhhhhhHHHHHHHHhh
Q psy4004 108 GAEEIVDG--NLKMTLGMIWTIILRFA 132 (319)
Q Consensus 108 ~~~dIvdg--n~k~iLgLiW~li~~f~ 132 (319)
.|+||+.+ +.+.++..+-+++.+|.
T Consensus 211 ~peDi~~~~pd~k~i~tyva~l~~~~~ 237 (245)
T 1sh5_A 211 DPEDVDVPQPDEKSIITYVSSLYDAMP 237 (245)
T ss_dssp CHHHHSSSSCCHHHHHHHHHHHHHHCC
T ss_pred CHHHhccCCCcHHHHHHHHHHHHHHcC
Confidence 99999965 67999999988888774
No 48
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=98.57 E-value=2.5e-08 Score=89.80 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHHH-hCCceeeecC
Q psy4004 31 LLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFIA-SKGVKLVSIG 108 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~lk-~~gv~l~~i~ 108 (319)
++.+.+|+|.+++.. +..|.|+.++++||+.+|.|+..+.|..++... ........+|+..|++.++ ..|++. -+.
T Consensus 137 ~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~-~~~~~~~~~n~~~a~~~A~~~lGi~~-~l~ 214 (246)
T 1dxx_A 137 EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNS-VVSQQSATQRLEHAFNIARYQLGIEK-LLD 214 (246)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHH-HHTCCCHHHHHHHHHHHHHHTTCCCC-CCC
T ss_pred HHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchhh-hcccCCHHHHHHHHHHHHHHhCCCCc-cCC
Confidence 678999999999876 578999999999999999999999888775321 0012346789999999998 699984 389
Q ss_pred chhhhccch--hhhhhHHHHHHHHh
Q psy4004 109 AEEIVDGNL--KMTLGMIWTIILRF 131 (319)
Q Consensus 109 ~~dIvdgn~--k~iLgLiW~li~~f 131 (319)
|+||+.+++ +.++..+-+++.+|
T Consensus 215 peDi~~~~pD~k~i~tyva~l~~~~ 239 (246)
T 1dxx_A 215 PEDVDTTYPDKKSILMYITSLFQVL 239 (246)
T ss_dssp HHHHSSSSCCHHHHHHHHHHHHTTS
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHc
Confidence 999999988 99999988888776
No 49
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=98.52 E-value=2.7e-07 Score=84.24 Aligned_cols=100 Identities=15% Similarity=0.331 Sum_probs=82.6
Q ss_pred hhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC--CC---ChhhhHHHHHHHHHHhCCCC
Q psy4004 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS--KD---NPLQNLNTAFDVAEKYLDIP 216 (319)
Q Consensus 142 ~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~--~~---~~~~n~~~a~~~a~~~lgip 216 (319)
..++.+.+|+|.++.+. +..|+|+.++++||+.||.|+..+.|..+ +..+. +. ...+|++.|++.+++ .|++
T Consensus 47 vQkktft~WiN~~L~~~-~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l-~~~~~~~p~~r~~kleNv~~aL~~lk~-~gv~ 123 (272)
T 3hoc_A 47 IQQNTFTRWCNEHLKCV-SKRIANLQTDLSDGLRLIALLEVLSQKKM-HRKHNQRPTFRQMQLENVSVALEFLDR-ESIK 123 (272)
T ss_dssp HHHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHHHHHTSCC-SSCCCSSCCSHHHHHHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHHHHhccC-CCCcccHHHHHhhHHHHHHHHHHHcCCcc-ccccCCCCccHHHHHHHHHHHHHHHHH-cCCc
Confidence 35678999999998765 57899999999999999999999998877 22322 22 258999999999995 8998
Q ss_pred CC-CCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 217 RM-LDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 217 ~l-l~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
.. +.++|++++ +.+.++..+.+++.+|.
T Consensus 124 lvnI~~~DIvdG---n~kliLgLlW~Li~~~~ 152 (272)
T 3hoc_A 124 LVSIDSKAIVDG---NLKLILGLIWTLILHYS 152 (272)
T ss_dssp CSSCCHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhcC---CHHHHHHHHHHHHHHHh
Confidence 64 999999965 47999999999988875
No 50
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=98.51 E-value=4.4e-07 Score=72.85 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCC--CCC-CCCchhhHhhhHHHHHHHHHhCCceeeec
Q psy4004 31 LLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP--KPD-RGKMRFHKIANVNKALDFIASKGVKLVSI 107 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~--~~~-~~~~r~~~ieNv~~aL~~lk~~gv~l~~i 107 (319)
++....|||..|...-..| ++|+||+++|+|++.|.|+.+| +.+ .+.+.++.++|.....+.+++.||+.. |
T Consensus 7 r~ElL~WIN~~L~~~~~ki----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k~-i 81 (123)
T 2qjz_A 7 RHDMLAWINESLQLNLTKI----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI-I 81 (123)
T ss_dssp HHHHHHHHHHHHTCCCCCG----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCC-C
T ss_pred HHHHHHHHHHHHCCCCchH----HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCCc-c
Confidence 4678899999987543334 5799999999999999999998 444 788999999999999999999999864 8
Q ss_pred CchhhhccchhhhhhHHHHHHHHh
Q psy4004 108 GAEEIVDGNLKMTLGMIWTIILRF 131 (319)
Q Consensus 108 ~~~dIvdgn~k~iLgLiW~li~~f 131 (319)
..+.++.|...-.|-++--+-..|
T Consensus 82 ~v~kLvkgk~qdnleflqW~k~f~ 105 (123)
T 2qjz_A 82 PVDKLVKGKFQDNFEFVQWFKKFF 105 (123)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHcCCchhHHHHHHHHHHHH
Confidence 999999999777776554333333
No 51
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.51 E-value=6.2e-08 Score=89.43 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhhccc-CCCccchHHHhhhHHHHHHHHHHhcCCCCCCCCCCCchhhHhhhHHHHHHHH-HhCCceeeec
Q psy4004 30 HLLTFTAWCNSHLRKA-GTAIENIEEDFRNGLKLMLLLEVISGETLPKPDRGKMRFHKIANVNKALDFI-ASKGVKLVSI 107 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~-~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~~~~~r~~~ieNv~~aL~~l-k~~gv~l~~i 107 (319)
.++.+.+|+|.++... +..|+|+.++++||+.+|.|++.+.+..++.. ...+....+|+..|++.+ +..|++.. +
T Consensus 190 ~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~--~l~~~~~~~N~~~Af~~Ae~~LGi~~l-l 266 (296)
T 3f7p_A 190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMN--KVYRQTNLENLDQAFSVAERDLGVTRL-L 266 (296)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHH--HHTTSCHHHHHHHHHHHHHHHHCCCCC-C
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHH--HcCcccHHHHHHHHHHHHHHhCCCCcc-C
Confidence 3677999999999865 57899999999999999999999988877532 112235689999999999 46899744 7
Q ss_pred Cchhhhcc--chhhhhhHHHHHHHHh
Q psy4004 108 GAEEIVDG--NLKMTLGMIWTIILRF 131 (319)
Q Consensus 108 ~~~dIvdg--n~k~iLgLiW~li~~f 131 (319)
.|+||+.+ +.+.++..+-+++.+|
T Consensus 267 ~pEDi~~~~pDeksimtyvs~ly~~f 292 (296)
T 3f7p_A 267 DPEDVDVPQPDEKSIITYVSSLYDAM 292 (296)
T ss_dssp CHHHHSSSSCCHHHHHHHHHHHHHTC
T ss_pred CHHHhcCCCCcHHHHHHHHHHHHHHC
Confidence 99999885 6799999998888776
No 52
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=98.47 E-value=5.2e-07 Score=81.13 Aligned_cols=101 Identities=17% Similarity=0.339 Sum_probs=82.9
Q ss_pred hhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCC--C---ChhhhHHHHHHHHHHhCCC
Q psy4004 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSK--D---NPLQNLNTAFDVAEKYLDI 215 (319)
Q Consensus 141 ~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~--~---~~~~n~~~a~~~a~~~lgi 215 (319)
...++.+.+|+|.++.+. +..|.|+.++++||..||.|+..+.|..+. ..+.. . ...+|++.|++.++. .|+
T Consensus 19 ~~q~~~f~~WiN~~L~~~-~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~-~~~n~~~~~~~~~~eNv~~aL~~~k~-~g~ 95 (245)
T 2wa7_A 19 KIQQNTFTRWCNEHLKCV-NKRIGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRPTFRQMQLENVSVALEFLDR-ESI 95 (245)
T ss_dssp GHHHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHHHHHTCCCS-SCCCSSCCSHHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHHhcccc-CCCccCHHHHcccHHHHHHHHHHHcCCCCc-hhcCCCCCcHHHHHHHHHHHHHHHHH-cCC
Confidence 345778999999998765 567899999999999999999999988763 22221 1 258999999999986 899
Q ss_pred CCC-CCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 216 PRM-LDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 216 p~l-l~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
+.. +.++|++++ +.+.++..+.+++.+|.
T Consensus 96 ~lv~I~~~DIvdG---~~kliLgLlW~li~~~~ 125 (245)
T 2wa7_A 96 KLVSIDSKAIVDG---NLKLILGLVWTLILHYS 125 (245)
T ss_dssp CCCSCCHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHhhCC---CHHHHHHHHHHHHHHHc
Confidence 864 899999965 47999999999998885
No 53
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=5.4e-07 Score=75.20 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCC--CCC-CCCchhhHhhhHHHHHHHHHhCCceeee
Q psy4004 30 HLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLP--KPD-RGKMRFHKIANVNKALDFIASKGVKLVS 106 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~--~~~-~~~~r~~~ieNv~~aL~~lk~~gv~l~~ 106 (319)
+++.+..|||..|...-..| ++|+||+++|+|++.|.+..+| +.+ .+.+.++.++|+....+.+++.||+..
T Consensus 23 sr~ElL~WIN~~L~~~~~ki----E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k~- 97 (159)
T 1wyo_A 23 SRHDMLAWVNDSLHLNYTKI----EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI- 97 (159)
T ss_dssp CHHHHHHHHHHHSCCCCSSG----GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCCC-
T ss_pred hHHHHHHHHHHHHCCCCchh----hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCCc-
Confidence 46778999999986543334 5799999999999999999988 444 788899999999999999999999865
Q ss_pred cCchhhhccchhhhhhHHHHHHHHh
Q psy4004 107 IGAEEIVDGNLKMTLGMIWTIILRF 131 (319)
Q Consensus 107 i~~~dIvdgn~k~iLgLiW~li~~f 131 (319)
|..+.++.|...-.|-++--+-..|
T Consensus 98 ipV~kLvkgk~qdNlEFlqWfk~f~ 122 (159)
T 1wyo_A 98 IPVEKLVKGKFQDNFEFIQWFKKFF 122 (159)
T ss_dssp CCHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred cCHHHHhcCCchhHHHHHHHHHHHH
Confidence 8999999998777776554344433
No 54
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=98.41 E-value=6.5e-07 Score=84.51 Aligned_cols=100 Identities=16% Similarity=0.328 Sum_probs=83.1
Q ss_pred hhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC-C---CChhhhHHHHHHHHHHhCCCCCC
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS-K---DNPLQNLNTAFDVAEKYLDIPRM 218 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~-~---~~~~~n~~~a~~~a~~~lgip~l 218 (319)
.++.+.+|||.++.+. +..|+|+.++++||+.||.|+..+.++.++..... + ....+|++.|++.+++ .|+...
T Consensus 18 Q~ktFt~WiN~~L~~~-~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~-~g~~lv 95 (347)
T 4b7l_A 18 QQNTFTRWCNEHLKSV-NKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDR-ESIKLV 95 (347)
T ss_dssp HHHHHHHHHHHHHGGG-TCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHH-TTCCCS
T ss_pred HHHHHHHHHHHhhCcC-CCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHH-hccccC
Confidence 4678999999998766 57899999999999999999999999887543221 1 2247999999999986 899764
Q ss_pred -CCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 219 -LDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 219 -l~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
+.++|++++ +.+.++..+.+++.+|.
T Consensus 96 ~i~~~DIvdG---n~~liLgLiW~li~~~~ 122 (347)
T 4b7l_A 96 SIDSKAIVDG---NLKLILGLVWTLILHYS 122 (347)
T ss_dssp SCCHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhcC---CHhhHHHHHHHHHHHHh
Confidence 999999975 47999999999998885
No 55
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=98.09 E-value=6.2e-06 Score=66.08 Aligned_cols=96 Identities=15% Similarity=0.346 Sum_probs=69.5
Q ss_pred hhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC-C----CChhhhHHHHHHHHHHhCCCCC
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS-K----DNPLQNLNTAFDVAEKYLDIPR 217 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~-~----~~~~~n~~~a~~~a~~~lgip~ 217 (319)
....||.|++..+. .+++-. ...+||.++|.|++.+.|+.|+...+. . -+..+|++.-.++.. .+|||+
T Consensus 6 sr~ElL~WIN~~L~----~~~~ki-E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~-k~gV~k 79 (123)
T 2qjz_A 6 SRHDMLAWINESLQ----LNLTKI-EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFK-RMGVDK 79 (123)
T ss_dssp CHHHHHHHHHHHHT----CCCCCG-GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHH-HHTCCC
T ss_pred cHHHHHHHHHHHHC----CCCchH-HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHH-HcCCCC
Confidence 45689999999884 222222 479999999999999999999876664 2 233788888666665 499999
Q ss_pred CCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 218 MLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 218 ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
.++.+.++.+. -.-.+-|+--++.+|.
T Consensus 80 ~i~v~kLvkgk---~qdnleflqW~k~f~d 106 (123)
T 2qjz_A 80 IIPVDKLVKGK---FQDNFEFVQWFKKFFD 106 (123)
T ss_dssp CCCHHHHTTCC---HHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHcCC---chhHHHHHHHHHHHHH
Confidence 99999998654 3344555555555554
No 56
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=98.07 E-value=5.2e-06 Score=86.87 Aligned_cols=101 Identities=15% Similarity=0.332 Sum_probs=83.4
Q ss_pred hhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCC--CCCChhhhHHHHHHHHHHhCCCCCC-
Q psy4004 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKL--SKDNPLQNLNTAFDVAEKYLDIPRM- 218 (319)
Q Consensus 142 ~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l--~~~~~~~n~~~a~~~a~~~lgip~l- 218 (319)
..+..+.+|+|.++.+. +..|.|+.++++||+.||.|+..+.|+.++.-.- ..-...+|+..|++.++. .||+..
T Consensus 8 ~q~~~f~~Win~~L~~~-~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~~-~g~~~~~ 85 (863)
T 1sjj_A 8 QQRKTFTAWCNSHLRKA-GTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIAS-KGVKLVS 85 (863)
T ss_dssp HHHHHHHHHHHHHHHHH-CSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHHH-TTCCCTT
T ss_pred HHHHHHHHHHHHHhccC-CCCccCHHHHhcCHHHHHHHHHHhCCCceeCCCCCccHHHHHHHHHHHHHHHHH-cCCccCC
Confidence 35678999999998655 4679999999999999999999999998865221 112347999999999986 899864
Q ss_pred CCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 219 LDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 219 l~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
+.|+|++++ +.+.++..+.+++.+|.
T Consensus 86 i~~~di~~g---~~~~~l~l~w~l~~~~~ 111 (863)
T 1sjj_A 86 IGAEEIVDG---NVKMTLGMIWTIILRFA 111 (863)
T ss_dssp CCSHHHHTT---CHHHHHHHHHHHHSCCC
T ss_pred CChHHhhcC---CHHHHHHHHHHHHHHHh
Confidence 999999965 47999999999988876
No 57
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.1e-05 Score=67.30 Aligned_cols=97 Identities=12% Similarity=0.340 Sum_probs=70.7
Q ss_pred hhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC-----CCChhhhHHHHHHHHHHhCCCC
Q psy4004 142 TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS-----KDNPLQNLNTAFDVAEKYLDIP 216 (319)
Q Consensus 142 ~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~-----~~~~~~n~~~a~~~a~~~lgip 216 (319)
..+..||.|++..+. .+++-. ...+||.++|.|++.+.|+.|+...+. .-+..+|++...++.. .+||+
T Consensus 22 ~sr~ElL~WIN~~L~----~~~~ki-E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~-k~gV~ 95 (159)
T 1wyo_A 22 LSRHDMLAWVNDSLH----LNYTKI-EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFK-KMGVD 95 (159)
T ss_dssp CCHHHHHHHHHHHSC----CCCSSG-GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHH-HHTCC
T ss_pred hhHHHHHHHHHHHHC----CCCchh-hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHH-HcCCC
Confidence 456789999999884 222222 479999999999999999999866554 2344788888776665 49999
Q ss_pred CCCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 217 RMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 217 ~ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
+.++.+.++.+.. .-.+-|+--|+.+|.
T Consensus 96 k~ipV~kLvkgk~---qdNlEFlqWfk~f~d 123 (159)
T 1wyo_A 96 KIIPVEKLVKGKF---QDNFEFIQWFKKFFD 123 (159)
T ss_dssp CCCCHHHHTTTCS---HHHHHHHHHHHHHHH
T ss_pred CccCHHHHhcCCc---hhHHHHHHHHHHHHH
Confidence 9999999986643 344555555555554
No 58
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=97.82 E-value=5e-05 Score=62.59 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=70.7
Q ss_pred hhhHHHHHHHhhhCCC-C--CcccccCCCCCcchHHHHHHHHhhCC---CccccCCCCC-C---ChhhhHHHHHHHHHHh
Q psy4004 143 AKEGLLLWCQRKTAPY-K--NVNVQNFHLSFKDGLAFCALIHRHRP---ELIDYHKLSK-D---NPLQNLNTAFDVAEKY 212 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~-~--~v~V~nfs~sw~DG~al~aLi~~~~P---~li~~~~l~~-~---~~~~n~~~a~~~a~~~ 212 (319)
.++.+..|+...+..- + .-...+|....+||.+||.|++++.| +.|+. .+.. . ...+|+...+..+++
T Consensus 10 ~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~-kin~~~~~f~~~eNI~~FL~ac~~- 87 (144)
T 1ujo_A 10 LEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKV-PENPPSMVFKQMEQVAQFLKAAED- 87 (144)
T ss_dssp HHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCC-CSSCCCSHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcce-eecCCCchhHHHHHHHHHHHHHHH-
Confidence 4678999999988532 1 11235888999999999999999999 77762 2222 1 237899999999986
Q ss_pred CCCCC--CCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 213 LDIPR--MLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 213 lgip~--ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
+|+|. +..+.|+.+. -+...|+..|..|-.+
T Consensus 88 ~Gv~~~~lF~t~DL~e~--kn~~~V~~cL~aL~~~ 120 (144)
T 1ujo_A 88 YGVIKTDMFQTVDLYEG--KDMAAVQRTLMALGSL 120 (144)
T ss_dssp HTCCSSSCCCHHHHHTC--SCHHHHHHHHHHHHHH
T ss_pred cCcCccccCChhHHHhc--CCHHHHHHHHHHHHHH
Confidence 99997 5799999763 3455555555555433
No 59
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=97.79 E-value=2.7e-05 Score=61.07 Aligned_cols=94 Identities=17% Similarity=0.365 Sum_probs=69.0
Q ss_pred hhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCC--CChhhhHHHHHHHHHHhCCCCC--C
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSK--DNPLQNLNTAFDVAEKYLDIPR--M 218 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~--~~~~~n~~~a~~~a~~~lgip~--l 218 (319)
.++.+..|++..+..- + -.+|..+.+||.+||.|++++.|+.++.-.-.. -...+|+...+..+++ +|+|. +
T Consensus 4 ~e~e~~~WIe~~l~~~--~-~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~-~Gv~~~~l 79 (108)
T 1h67_A 4 TERQLRVWIEGATGRR--I-GDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKH-YGVKPHDI 79 (108)
T ss_dssp SSHHHHHHHHHHHSCC--C-CSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHH-HTSCGGGS
T ss_pred HHHHHHHHHHHHhCCC--C-cHHHHHHHccHHHHHHHHHHhCCCCcccccccccchHHHHHHHHHHHHHHH-cCCCcccc
Confidence 3567899999988532 1 257889999999999999999999986321111 1237999999999985 99996 6
Q ss_pred CCcccccCCCCCChhhHHHHHHHH
Q psy4004 219 LDPEDLINTPKPDERAIMTYVSCY 242 (319)
Q Consensus 219 l~~eD~~~~~~pDe~si~~yls~l 242 (319)
..+.|+.+. -+...|+..+..+
T Consensus 80 F~~~DL~e~--kn~~~V~~~l~aL 101 (108)
T 1h67_A 80 FEANDLFEN--TNHTQVQSTLIAL 101 (108)
T ss_dssp CCHHHHHHT--CCSHHHHHHHHHH
T ss_pred cChhHHHhC--CChHHHHHHHHHH
Confidence 899998764 3445555555444
No 60
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.2e-05 Score=64.76 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=71.0
Q ss_pred hhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCCCh----hhhHHHH-HHHHHHhCCCCCC
Q psy4004 144 KEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKDNP----LQNLNTA-FDVAEKYLDIPRM 218 (319)
Q Consensus 144 k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~~~----~~n~~~a-~~~a~~~lgip~l 218 (319)
...|++|++..--. .++.|+..+|+||..++.|+++|.|.++|+....+.+. ..|.+.- ..+.. .+|++
T Consensus 17 ~~el~~WL~~l~Ls---~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~-kl~~~-- 90 (127)
T 2ee7_A 17 LHQLYLWVDNIPLS---RPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLK-RLNFS-- 90 (127)
T ss_dssp HHHHHHHHHHSCCS---CCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTG-GGTCC--
T ss_pred HHHHHHHHHcCCCC---CCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHH-HcCCC--
Confidence 45799999953322 35788999999999999999999999999988876544 5666654 23454 48987
Q ss_pred CCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 219 LDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 219 l~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
++.+++...-...+-.+...|..+|..+.
T Consensus 91 l~~~~i~~i~~~~~Gaie~lL~~L~~~l~ 119 (127)
T 2ee7_A 91 VPDDVMRKIAQCAPGVVELVLIPLRQRLE 119 (127)
T ss_dssp CCHHHHHHHHTTCTTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77766533323345667777778888877
No 61
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.0001 Score=59.28 Aligned_cols=103 Identities=10% Similarity=0.107 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCC--CCCCCchhhHhhhHHHHH-HHHHhCCcee
Q psy4004 28 KSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPK--PDRGKMRFHKIANVNKAL-DFIASKGVKL 104 (319)
Q Consensus 28 ~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~--~~~~~~r~~~ieNv~~aL-~~lk~~gv~l 104 (319)
+.+.+.+.+|++.. .-..++.++..||.||+.+.+++....++.+.- +..+.+...++.|=+..- .+++..|+.+
T Consensus 14 ~ee~~el~~WL~~l--~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~~l 91 (127)
T 2ee7_A 14 EEALHQLYLWVDNI--PLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNFSV 91 (127)
T ss_dssp HHHHHHHHHHHHHS--CCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTCCC
T ss_pred HHHHHHHHHHHHcC--CCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCCCC
Confidence 34567788999953 234468899999999999999999999986654 356778889999998874 7899999988
Q ss_pred eecCchhhhccchhhhhhHHHHHHHHhh
Q psy4004 105 VSIGAEEIVDGNLKMTLGMIWTIILRFA 132 (319)
Q Consensus 105 ~~i~~~dIvdgn~k~iLgLiW~li~~f~ 132 (319)
..-..+.|+.|.+..+-.|++.|..+++
T Consensus 92 ~~~~i~~i~~~~~Gaie~lL~~L~~~l~ 119 (127)
T 2ee7_A 92 PDDVMRKIAQCAPGVVELVLIPLRQRLE 119 (127)
T ss_dssp CHHHHHHHHTTCTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7777789999999999999998876653
No 62
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.75 E-value=8.6e-05 Score=60.59 Aligned_cols=97 Identities=18% Similarity=0.338 Sum_probs=71.1
Q ss_pred hhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCC--CChhhhHHHHHHHHHHhCCCCC--C
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSK--DNPLQNLNTAFDVAEKYLDIPR--M 218 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~--~~~~~n~~~a~~~a~~~lgip~--l 218 (319)
.++.+..|++..+..- + -.+|....+||.+||.|++.+.|+.+..-.-.. -...+|+...+..++. +|+|. +
T Consensus 18 ~~~e~~~WIe~~l~~~--~-~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~-~Gv~~~~l 93 (136)
T 1wyp_A 18 REQELREWIEGVTGRR--I-GNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITK-YGVKPHDI 93 (136)
T ss_dssp HHHHHHHHHHHHTCCC--C-CSCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSSCSHHHHHHHHHHHHHHHH-HTCCGGGC
T ss_pred HHHHHHHHHHHHhCCC--C-cHHHHHHHccHHhHHHHHHhhCCCCcccccccccchHHHHHHHHHHHHHHH-cCCCcccc
Confidence 4578999999987532 2 258999999999999999999999884211111 1247999999999985 99996 6
Q ss_pred CCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 219 LDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 219 l~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
..+.|+.+. -+...|+..+..+-.+
T Consensus 94 F~~~DL~e~--kn~~~V~~cL~aL~~~ 118 (136)
T 1wyp_A 94 FEANDLFEN--TNHTQVQSTLLALASM 118 (136)
T ss_dssp CCHHHHHSC--SCSHHHHHHHHHHHHH
T ss_pred cCchHHhcC--CCHHHHHHHHHHHHHH
Confidence 999999764 3445555555555433
No 63
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.73 E-value=9.8e-05 Score=61.86 Aligned_cols=97 Identities=11% Similarity=0.259 Sum_probs=71.2
Q ss_pred hhHHHHHHHhhhCCCCCcc-cccCCCCCcchHHHHHHHHhhCCCccccC---CCCCCChhhhHHHHHHHHHHhCCCCC--
Q psy4004 144 KEGLLLWCQRKTAPYKNVN-VQNFHLSFKDGLAFCALIHRHRPELIDYH---KLSKDNPLQNLNTAFDVAEKYLDIPR-- 217 (319)
Q Consensus 144 k~~LL~W~q~~~~~~~~v~-V~nfs~sw~DG~al~aLi~~~~P~li~~~---~l~~~~~~~n~~~a~~~a~~~lgip~-- 217 (319)
.+.+..|+...+.. .++ -.+|....+||.+||.|++.+.|+.+..- +...-...+|+...+..+++ +|+|.
T Consensus 13 ~~e~~~WIe~~l~~--~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~-~Gv~~~~ 89 (159)
T 1p2x_A 13 VDEAKKWIEECLGT--DLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHG-IGLPEIF 89 (159)
T ss_dssp HHHHHHHHHHHHTS--CCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHH-TTCCGGG
T ss_pred HHHHHHHHHHHhCC--CCCChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHH-cCCCccc
Confidence 46788999988852 122 34788999999999999999999988321 12234568999999999985 99997
Q ss_pred CCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 218 MLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 218 ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
+..+.|+.+. -+...|+..+..+-.+
T Consensus 90 lF~~~DL~e~--kn~~~Vi~~L~aL~~~ 115 (159)
T 1p2x_A 90 HFELTDIYEG--KNLPKVIYCIHALSYF 115 (159)
T ss_dssp CCCHHHHSSC--SCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhc--CCHHHHHHHHHHHHHH
Confidence 5799999763 4455555555555443
No 64
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=6.6e-05 Score=62.66 Aligned_cols=96 Identities=19% Similarity=0.328 Sum_probs=71.2
Q ss_pred hhhHHHHHHHhhhCCCCCccc-----ccCCCCCcchHHHHHHHHhhCC---CccccCCCCCC----ChhhhHHHHHHHHH
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNV-----QNFHLSFKDGLAFCALIHRHRP---ELIDYHKLSKD----NPLQNLNTAFDVAE 210 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V-----~nfs~sw~DG~al~aLi~~~~P---~li~~~~l~~~----~~~~n~~~a~~~a~ 210 (319)
.++.+..|+...+..- ++. .+|....+||.+||.|++.+.| +.|+ .+... ...+|+...+..++
T Consensus 18 ~e~e~~~WIe~~l~~~--l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~--kIn~~~~~F~~~eNI~~FL~ac~ 93 (155)
T 1wym_A 18 LEQILIQWITTQCRKD--VGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK--KIQASTMAFKQMEQISQFLQAAE 93 (155)
T ss_dssp HHHHHHHHHHHHSSSC--CCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC--CCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--CCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC--cccCCCccccHHHHHHHHHHHHH
Confidence 4668999999887531 222 5788899999999999999999 8886 22222 23789999999998
Q ss_pred HhCCCCC--CCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 211 KYLDIPR--MLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 211 ~~lgip~--ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
+ +|+|. +..+.|+.+. -+...|+..|..+-.+
T Consensus 94 ~-~Gv~~~~lF~t~DL~e~--kn~~~Vi~cL~aL~~~ 127 (155)
T 1wym_A 94 R-YGINTTDIFQTVDLWEG--KNMACVQRTLMNLGGL 127 (155)
T ss_dssp H-HTCCTTTCCCHHHHHTC--SCHHHHHHHHHHHHHH
T ss_pred H-cCCCccccCChHHHHhc--CCHHHHHHHHHHHHHH
Confidence 6 99997 5699999763 4556666666555444
No 65
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.65 E-value=9.1e-05 Score=61.19 Aligned_cols=96 Identities=17% Similarity=0.354 Sum_probs=71.8
Q ss_pred hhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCCC----ChhhhHHHHHHHHHHhCCCCC-
Q psy4004 143 AKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSKD----NPLQNLNTAFDVAEKYLDIPR- 217 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~~----~~~~n~~~a~~~a~~~lgip~- 217 (319)
.++.+..|++..+..- + -.+|-...+||.+||.|++.+.|+.+. .+... ...+|+...+..++. +|+|.
T Consensus 18 ~~~e~~~WIe~~l~~~--i-~~~l~~~L~DGvvLCkL~N~l~P~~v~--kin~~~~~f~~~eNI~~FL~a~~~-~Gv~~~ 91 (146)
T 1wyn_A 18 KEAELRTWIEGLTGLS--I-GPDFQKGLKDGTILCTLMNKLQPGSVP--KINRSMQNWHQLENLSNFIKAMVS-YGMNPV 91 (146)
T ss_dssp HHHHHHHHHHHHHCCC--C-CSCHHHHHHTTSHHHHHHHHHCTTSCS--CCCCSSCHHHHHHHHHHHHHHHHH-HTCCSS
T ss_pred HHHHHHHHHHHHhCCC--C-cHHHHHHHccHHHHHHHHHHhCCCCcc--ccccccccccHHHHHHHHHHHHHH-cCCCcc
Confidence 4678999999988422 2 257888999999999999999999884 22221 247999999999985 99996
Q ss_pred -CCCcccccCCCCCChhhHHHHHHHHHHHh
Q psy4004 218 -MLDPEDLINTPKPDERAIMTYVSCYYHAF 246 (319)
Q Consensus 218 -ll~~eD~~~~~~pDe~si~~yls~l~~~f 246 (319)
+..+.|+.+. -+...|+..|..+-.+.
T Consensus 92 ~lF~~~DL~e~--kn~~~V~~cL~aL~~~a 119 (146)
T 1wyn_A 92 DLFEANDLFES--GNMTQVQVSLLALAGKA 119 (146)
T ss_dssp SCCCHHHHHTC--SCSHHHHHHHHHHHHHH
T ss_pred cccChhHHHhc--CChHHHHHHHHHHHHHH
Confidence 6899999764 34456666665555443
No 66
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=97.63 E-value=7.9e-05 Score=64.37 Aligned_cols=99 Identities=9% Similarity=0.224 Sum_probs=73.4
Q ss_pred hhhHHHHHHHhhhCCCCCcc-cccCCCCCcchHHHHHHHHhhCCCccccCCCC------------CCChhhhHHHHHHHH
Q psy4004 143 AKEGLLLWCQRKTAPYKNVN-VQNFHLSFKDGLAFCALIHRHRPELIDYHKLS------------KDNPLQNLNTAFDVA 209 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~~~~v~-V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~------------~~~~~~n~~~a~~~a 209 (319)
..+.+..|+...+.. .++ ..+|....+||.+||.|++.+.|+.++...+. .-...+|+...+..+
T Consensus 48 ~~~e~~~WIe~~lg~--~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac 125 (193)
T 3i6x_A 48 HLEEAKRWMEACLGE--DLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAM 125 (193)
T ss_dssp HHHHHHHHHHHHHSS--CCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHH
Confidence 344789999998853 122 24899999999999999999999998644431 123479999999999
Q ss_pred HHhCCCCC--CCCcccccCCCCCChhhHHHHHHHHHHHh
Q psy4004 210 EKYLDIPR--MLDPEDLINTPKPDERAIMTYVSCYYHAF 246 (319)
Q Consensus 210 ~~~lgip~--ll~~eD~~~~~~pDe~si~~yls~l~~~f 246 (319)
++ +|+|. +..+.|+.+ .-+...|+..|..|-.+.
T Consensus 126 ~~-~Gvp~~~lFet~DL~e--~kn~~~V~~cL~aL~~~a 161 (193)
T 3i6x_A 126 DE-IGLPKIFYPETTDIYD--RKNMPRCIYCIHALSLYL 161 (193)
T ss_dssp HH-HTCCGGGCCCHHHHHS--CSCHHHHHHHHHHHHHHH
T ss_pred HH-cCCCcccCCCcHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 85 99997 679999875 345566666666664443
No 67
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=97.59 E-value=0.00017 Score=62.81 Aligned_cols=98 Identities=11% Similarity=0.233 Sum_probs=72.0
Q ss_pred hhhHHHHHHHhhhCC-CCCcccccCCCCCcchHHHHHHHHhhCCCccccC---CCCCCChhhhHHHHHHHHHHhCCCCC-
Q psy4004 143 AKEGLLLWCQRKTAP-YKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYH---KLSKDNPLQNLNTAFDVAEKYLDIPR- 217 (319)
Q Consensus 143 ~k~~LL~W~q~~~~~-~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~---~l~~~~~~~n~~~a~~~a~~~lgip~- 217 (319)
..+.+..|+...+.. .+ ...+|-...+||.+||.|++++.|+.+..- +...-...+|+...+..+++ +|+|.
T Consensus 56 ~~~e~~~WIe~~l~~~l~--~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~-~Gvp~~ 132 (203)
T 1p5s_A 56 RVDEAKKWIEECLGTDLG--PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHG-IGLPEI 132 (203)
T ss_dssp HHHHHHHHHHHHHTSCCC--CGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHH-TTCCGG
T ss_pred HHHHHHHHHHHHhCCCCC--ChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHH-cCCCcc
Confidence 467899999988742 22 245898999999999999999999988321 12233568999999999985 99997
Q ss_pred -CCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 218 -MLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 218 -ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
+..+.|+.+. -+...|+..|..+-.+
T Consensus 133 ~lF~t~DL~e~--kn~~~Vi~~L~aL~~~ 159 (203)
T 1p5s_A 133 FHFELTDIYEG--KNLPKVIYCIHALSYF 159 (203)
T ss_dssp GCCCHHHHHSC--SCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHhc--CCHHHHHHHHHHHHHH
Confidence 4799999764 3445555555544433
No 68
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=97.57 E-value=9.5e-05 Score=63.75 Aligned_cols=97 Identities=9% Similarity=0.214 Sum_probs=71.9
Q ss_pred hhHHHHHHHhhhCCCCCcc-cccCCCCCcchHHHHHHHHhhCCCccccCCCC------------CCChhhhHHHHHHHHH
Q psy4004 144 KEGLLLWCQRKTAPYKNVN-VQNFHLSFKDGLAFCALIHRHRPELIDYHKLS------------KDNPLQNLNTAFDVAE 210 (319)
Q Consensus 144 k~~LL~W~q~~~~~~~~v~-V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~------------~~~~~~n~~~a~~~a~ 210 (319)
.+.+..|+...+.. .++ ..+|....+||.+||.|++.+.|+.++...+. .-...+|+...+..++
T Consensus 27 ~~e~~~WIe~~lg~--~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~ 104 (190)
T 2rr8_A 27 LEEAKRWMEACLGE--DLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMD 104 (190)
T ss_dssp HHHHHHHHHHHSCC--CCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCC--CCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHH
Confidence 37899999988742 122 35798999999999999999999998643331 2244799999999888
Q ss_pred HhCCCCC--CCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 211 KYLDIPR--MLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 211 ~~lgip~--ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
+ +|+|. +..+.|+.+. -+...|+..|..+-.+
T Consensus 105 ~-~Gvp~~~lFet~DL~e~--kn~~~Vi~cL~aL~~~ 138 (190)
T 2rr8_A 105 E-IGLPKIFYPETTDIYDR--KNMPRCIYCIHALSLY 138 (190)
T ss_dssp G-TTCCSTTCCCHHHHTCT--TCCHHHHHHHHHHHHH
T ss_pred H-cCCCccccCCHHHHHhc--CCHHHHHHHHHHHHHH
Confidence 6 99997 5799998764 3455566665555444
No 69
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=97.40 E-value=0.00036 Score=55.71 Aligned_cols=99 Identities=19% Similarity=0.382 Sum_probs=69.1
Q ss_pred hhhHHHHHHHhhhC-CCCCcc---ccc-CCCCCcchHHHHHHHHhhCCCccccCCCCCC---ChhhhHHHHHHHHHHhCC
Q psy4004 143 AKEGLLLWCQRKTA-PYKNVN---VQN-FHLSFKDGLAFCALIHRHRPELIDYHKLSKD---NPLQNLNTAFDVAEKYLD 214 (319)
Q Consensus 143 ~k~~LL~W~q~~~~-~~~~v~---V~n-fs~sw~DG~al~aLi~~~~P~li~~~~l~~~---~~~~n~~~a~~~a~~~lg 214 (319)
.++.+..|.+..+. ..++.+ -.+ |....+||.+||.|++++.|+.++.-.-.+. ...+|+...+..+++ +|
T Consensus 7 ~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~-~g 85 (121)
T 1wyr_A 7 GEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCAT-LQ 85 (121)
T ss_dssp SHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHH-cC
Confidence 46688999998753 221211 123 5688999999999999999999973211122 257999999999987 79
Q ss_pred CCCCCCcccccCCCCCChhhHHHHHHHHHHH
Q psy4004 215 IPRMLDPEDLINTPKPDERAIMTYVSCYYHA 245 (319)
Q Consensus 215 ip~ll~~eD~~~~~~pDe~si~~yls~l~~~ 245 (319)
+ .+..+.|+.+. -+...|+..+..+-.+
T Consensus 86 ~-~~F~~~DL~e~--kn~~~V~~cL~aL~~~ 113 (121)
T 1wyr_A 86 V-EIFDPDDLYSG--VNFSKVLSTLLAVNKA 113 (121)
T ss_dssp C-CCCCHHHHHTC--SCHHHHHHHHHHHHHH
T ss_pred C-CccCHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 8 78999999763 3455555555555443
No 70
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=97.37 E-value=0.00044 Score=55.59 Aligned_cols=98 Identities=18% Similarity=0.298 Sum_probs=68.2
Q ss_pred hhhHHHHHHHhhhC-CCCC---cccccC-CCCCcchHHHHHHHHhhCCCccccCCCCCC---ChhhhHHHHHHHHHHhCC
Q psy4004 143 AKEGLLLWCQRKTA-PYKN---VNVQNF-HLSFKDGLAFCALIHRHRPELIDYHKLSKD---NPLQNLNTAFDVAEKYLD 214 (319)
Q Consensus 143 ~k~~LL~W~q~~~~-~~~~---v~V~nf-s~sw~DG~al~aLi~~~~P~li~~~~l~~~---~~~~n~~~a~~~a~~~lg 214 (319)
.++.+..|....+. ...+ .+-.+| ....+||.+||.|++.+.|+.++.-.-.+. ...+|+...+..+++.+|
T Consensus 13 ~~~e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g 92 (126)
T 2l3g_A 13 SAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLR 92 (126)
T ss_dssp HHHHHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 46789999998743 2211 123466 689999999999999999999972211111 237999999999886589
Q ss_pred CCCCCCcccccCCCCCChhhHHHHHHHHH
Q psy4004 215 IPRMLDPEDLINTPKPDERAIMTYVSCYY 243 (319)
Q Consensus 215 ip~ll~~eD~~~~~~pDe~si~~yls~l~ 243 (319)
+ .+..+.|+.+. -+...|+..+..+-
T Consensus 93 ~-~lF~t~DL~e~--kn~~~V~~cL~aL~ 118 (126)
T 2l3g_A 93 L-ETFDANDLYQG--QNFNKVLSSLVTLN 118 (126)
T ss_dssp C-CCCCHHHHHTT--SCHHHHHHHHHHHH
T ss_pred C-CccCHHHHHhC--CCHHHHHHHHHHHH
Confidence 7 67899998753 34455555555443
No 71
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=97.30 E-value=0.0005 Score=68.98 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=67.3
Q ss_pred HHHHHHhhhc--cc------CCCccchHHHhhhHHHHHHHHHHhcCCCCCCC---CCCCc-hhhHhhhHHHHHHHH-HhC
Q psy4004 34 FTAWCNSHLR--KA------GTAIENIEEDFRNGLKLMLLLEVISGETLPKP---DRGKM-RFHKIANVNKALDFI-ASK 100 (319)
Q Consensus 34 f~~WiN~~L~--~~------~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~~~~-r~~~ieNv~~aL~~l-k~~ 100 (319)
-..|++.... .. ..++.||.+.|+||++||+|++.|.++.++.+ ..|.+ .++.++|++..|+++ +..
T Consensus 10 ~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~~ 89 (587)
T 3ky9_A 10 CTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKF 89 (587)
T ss_dssp HHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHc
Confidence 4679987422 11 12468999999999999999999999988532 23443 699999999999999 778
Q ss_pred Ccee-eecCchhhhccc-hhhhhhHHH
Q psy4004 101 GVKL-VSIGAEEIVDGN-LKMTLGMIW 125 (319)
Q Consensus 101 gv~l-~~i~~~dIvdgn-~k~iLgLiW 125 (319)
|++- .-..+.|++++. ...++--|-
T Consensus 90 g~~~~~~f~~~Dl~~~~~~~~V~~~l~ 116 (587)
T 3ky9_A 90 GLKRSELFEAFDLFDVQDFGKVIYTLS 116 (587)
T ss_dssp CCCTTSSCCHHHHHTCSCHHHHHHHHH
T ss_pred CCCHHHcCCchhhhccCCcchHHHHHH
Confidence 9873 236889999874 444443333
No 72
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=97.13 E-value=0.00097 Score=60.00 Aligned_cols=94 Identities=15% Similarity=0.339 Sum_probs=67.0
Q ss_pred hhhHHHHHHHhhhC-CCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCC-----CChhhhHHHHHHHHHHhCCCC
Q psy4004 143 AKEGLLLWCQRKTA-PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSK-----DNPLQNLNTAFDVAEKYLDIP 216 (319)
Q Consensus 143 ~k~~LL~W~q~~~~-~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~-----~~~~~n~~~a~~~a~~~lgip 216 (319)
....||.|+|..+. .|.. | ....+|.++|.|++.+.|+.|+...+.- .+..+|.+..-++.. .+||+
T Consensus 16 sR~elL~WiN~~L~~~~~k--i----Eel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~-k~~I~ 88 (268)
T 2r8u_A 16 SRHDMLAWINESLQLNLTK--I----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFK-RMGVD 88 (268)
T ss_dssp CHHHHHHHHHHHHTCCCCC--G----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHH-HTTCC
T ss_pred CHHHHHHHHHHHhcCCcch--H----HHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHH-HcCCC
Confidence 46789999999885 2322 2 3678899999999999999998877643 244677777555555 59999
Q ss_pred CCCCcccccCCCCCChhhHHHHHHHHHHHh
Q psy4004 217 RMLDPEDLINTPKPDERAIMTYVSCYYHAF 246 (319)
Q Consensus 217 ~ll~~eD~~~~~~pDe~si~~yls~l~~~f 246 (319)
+.++.+.++.+..-|- +-|+--|+.+|
T Consensus 89 k~ipV~kLvkgk~qDN---lEFlqWfkkf~ 115 (268)
T 2r8u_A 89 KIIPVDKLVKGKFQDN---FEFVQWFKKFF 115 (268)
T ss_dssp CCCCHHHHTTTCHHHH---HHHHHHHHHHH
T ss_pred CccCHHHHhccCchhH---HHHHHHHHHHH
Confidence 9999999986643344 44444444433
No 73
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=96.84 E-value=0.0015 Score=53.33 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=65.8
Q ss_pred hhhHHHHHHHhhhC-CCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCC-----CCChhhhHHHHHHHHHHhCCCC
Q psy4004 143 AKEGLLLWCQRKTA-PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLS-----KDNPLQNLNTAFDVAEKYLDIP 216 (319)
Q Consensus 143 ~k~~LL~W~q~~~~-~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~-----~~~~~~n~~~a~~~a~~~lgip 216 (319)
....||.|+|..+. .|..+ .+..+|.|+|.|++.+.| .|+...+. ..+..+|.+.--+... .+||+
T Consensus 7 SR~eLL~WiN~~L~~n~tkI------E~l~sGAaYCQlmD~lfg-~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~-k~~I~ 78 (145)
T 4abo_I 7 SRQELLAWINQVTSLGLTRI------EDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFL-KKGID 78 (145)
T ss_dssp CHHHHHHHHHHHHTCCCCSG------GGGGGSHHHHHHHHHHHC-CSCTTTSCSSCCSHHHHHHHHHHHHHHHH-HHTCC
T ss_pred cHHHHHHHHHHHcCCCcchH------HHccccHHHHHHHHHHhc-CcchhhcccCCCCHHHHHHHHHHHHHHHH-HcCCC
Confidence 45689999999874 34322 467889999999999995 46666664 2344777777555555 58999
Q ss_pred CCCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 217 RMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 217 ~ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
+.++.+.++.+. -...+-|+--|+.+|.
T Consensus 79 k~ipV~kLvKgk---~QDNlEFlQWfkkf~d 106 (145)
T 4abo_I 79 KVVDPERLSRCK---MQDNLEFVQWAKRFWD 106 (145)
T ss_dssp CCCCHHHHTTTC---HHHHHHHHHHHHHHHH
T ss_pred CccCHHHHhccc---hHhHHHHHHHHHHHHH
Confidence 999999998554 3444555555555554
No 74
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=96.79 E-value=0.0082 Score=48.95 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC---CCCCchhhHhhhHHHHHHHHHhCCceeeec
Q psy4004 31 LLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP---DRGKMRFHKIANVNKALDFIASKGVKLVSI 107 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~~~~r~~~ieNv~~aL~~lk~~gv~l~~i 107 (319)
+..+..|||..|...-..| +++++|...|+|++.|. ..+|-. -.++...+.++|....=+.+++.||+.. |
T Consensus 8 R~eLL~WiN~~L~~n~tkI----E~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k~-i 81 (145)
T 4abo_I 8 RQELLAWINQVTSLGLTRI----EDCGKGYAMIQIFDSIY-QDIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKV-V 81 (145)
T ss_dssp HHHHHHHHHHHHTCCCCSG----GGGGGSHHHHHHHHHHH-CCSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCCC-C
T ss_pred HHHHHHHHHHHcCCCcchH----HHccccHHHHHHHHHHh-cCcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCCc-c
Confidence 5678999999986433334 46789999999999999 445532 3577889999999988888899999865 8
Q ss_pred CchhhhccchhhhhhHHHHHHHHhh
Q psy4004 108 GAEEIVDGNLKMTLGMIWTIILRFA 132 (319)
Q Consensus 108 ~~~dIvdgn~k~iLgLiW~li~~f~ 132 (319)
..+.++.|...--|-++--+-..|.
T Consensus 82 pV~kLvKgk~QDNlEFlQWfkkf~d 106 (145)
T 4abo_I 82 DPERLSRCKMQDNLEFVQWAKRFWD 106 (145)
T ss_dssp CHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHhccchHhHHHHHHHHHHHHH
Confidence 9999999998777766544444444
No 75
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.01 Score=47.46 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC---CCCCchhhHhhhHHHHHHHHHhCCceeee
Q psy4004 30 HLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP---DRGKMRFHKIANVNKALDFIASKGVKLVS 106 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~~~~r~~~ieNv~~aL~~lk~~gv~l~~ 106 (319)
-+..+..|||..|...-..|+ ++++|...|++++.+.|. +|-. ..+....+.++|....=+.+.+.||+..
T Consensus 11 sR~elL~WiN~~L~~n~~kiE----el~tGaayCQl~d~l~g~-v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~k~- 84 (127)
T 2qjx_A 11 SRTELLTWLNGLLNLNYKKIE----ECGTGAAYCQIMDSIYGD-LPMNRVKFNATAEYEFQTNYKILQSCFSRHGIEKT- 84 (127)
T ss_dssp CHHHHHHHHHHHHTCCCCSGG----GGGGSHHHHHHHHHHHCC-SCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred CHHHHHHHHHHHHcCCccHHH----HccchHHHHHHHhhhccc-cCccccCCCCCCHHHHHHHHHHHHHHHHHcCCCCc-
Confidence 357899999999875433444 558999999999999965 5432 3577888999999988888899999854
Q ss_pred cCchhhhccchhhhhhHH
Q psy4004 107 IGAEEIVDGNLKMTLGMI 124 (319)
Q Consensus 107 i~~~dIvdgn~k~iLgLi 124 (319)
|..+.++.|...-.+-++
T Consensus 85 ipV~kLvKgrfQDNlEFl 102 (127)
T 2qjx_A 85 VYVDKLIRCKFQDNLEFL 102 (127)
T ss_dssp CCHHHHTTTCHHHHHHHH
T ss_pred cCHHHHhccCchhHHHHH
Confidence 888999999877666554
No 76
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=96.70 E-value=0.008 Score=54.04 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC---CCCCchhhHhhhHHHHHHHHHhCCceeeec
Q psy4004 31 LLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP---DRGKMRFHKIANVNKALDFIASKGVKLVSI 107 (319)
Q Consensus 31 ~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~~~~r~~~ieNv~~aL~~lk~~gv~l~~i 107 (319)
+..+..|||..|...-..| +++++|...|+|++.|.+..+|-. ..++.....++|....=+.+++.||... |
T Consensus 17 R~elL~WiN~~L~~~~~ki----Eel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k~-i 91 (268)
T 2r8u_A 17 RHDMLAWINESLQLNLTKI----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI-I 91 (268)
T ss_dssp HHHHHHHHHHHHTCCCCCG----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCCC-C
T ss_pred HHHHHHHHHHHhcCCcchH----HHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCCc-c
Confidence 4678999999987433333 467899999999999999888743 4678889999999988888999999864 8
Q ss_pred CchhhhccchhhhhhHHHHHHHHhh
Q psy4004 108 GAEEIVDGNLKMTLGMIWTIILRFA 132 (319)
Q Consensus 108 ~~~dIvdgn~k~iLgLiW~li~~f~ 132 (319)
..+.++.|...--|-++-.+-..|.
T Consensus 92 pV~kLvkgk~qDNlEFlqWfkkf~d 116 (268)
T 2r8u_A 92 PVDKLVKGKFQDNFEFVQWFKKFFD 116 (268)
T ss_dssp CHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHhccCchhHHHHHHHHHHHHH
Confidence 9999999998877766544444443
No 77
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0048 Score=49.41 Aligned_cols=94 Identities=13% Similarity=0.240 Sum_probs=65.4
Q ss_pred hhhHHHHHHHhhhC-CCCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCC-----CChhhhHHHHHHHHHHhCCCC
Q psy4004 143 AKEGLLLWCQRKTA-PYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSK-----DNPLQNLNTAFDVAEKYLDIP 216 (319)
Q Consensus 143 ~k~~LL~W~q~~~~-~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~-----~~~~~n~~~a~~~a~~~lgip 216 (319)
....||.|++..+. .|.. |. ...+|.|+|.|++.+.|+ ++...+.- .+...|.+..-+... .+||+
T Consensus 11 sR~elL~WiN~~L~~n~~k--iE----el~tGaayCQl~d~l~g~-v~l~kVkf~a~~e~e~~~N~k~LQ~~f~-k~~I~ 82 (127)
T 2qjx_A 11 SRTELLTWLNGLLNLNYKK--IE----ECGTGAAYCQIMDSIYGD-LPMNRVKFNATAEYEFQTNYKILQSCFS-RHGIE 82 (127)
T ss_dssp CHHHHHHHHHHHHTCCCCS--GG----GGGGSHHHHHHHHHHHCC-SCGGGSCTTCCSHHHHHHHHHHHHHHHH-HTTCC
T ss_pred CHHHHHHHHHHHHcCCccH--HH----HccchHHHHHHHhhhccc-cCccccCCCCCCHHHHHHHHHHHHHHHH-HcCCC
Confidence 46789999999875 4543 33 457899999999999976 66655542 233577777555555 59999
Q ss_pred CCCCcccccCCCCCChhhHHHHHHHHHHHhc
Q psy4004 217 RMLDPEDLINTPKPDERAIMTYVSCYYHAFQ 247 (319)
Q Consensus 217 ~ll~~eD~~~~~~pDe~si~~yls~l~~~f~ 247 (319)
+.++.+.++.+. -.-.+-|+--++++|.
T Consensus 83 k~ipV~kLvKgr---fQDNlEFlQWfkkf~d 110 (127)
T 2qjx_A 83 KTVYVDKLIRCK---FQDNLEFLQWLKKHWI 110 (127)
T ss_dssp CCCCHHHHTTTC---HHHHHHHHHHHHHHHH
T ss_pred CccCHHHHhccC---chhHHHHHHHHHHHHH
Confidence 999999998654 3344555555555554
No 78
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.79 E-value=0.0075 Score=60.38 Aligned_cols=96 Identities=17% Similarity=0.325 Sum_probs=69.0
Q ss_pred HHHHHHHhhhCC-------CCCcccccCCCCCcchHHHHHHHHhhCCCccccCCCCC--C----ChhhhHHHHHHHHHHh
Q psy4004 146 GLLLWCQRKTAP-------YKNVNVQNFHLSFKDGLAFCALIHRHRPELIDYHKLSK--D----NPLQNLNTAFDVAEKY 212 (319)
Q Consensus 146 ~LL~W~q~~~~~-------~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~~~l~~--~----~~~~n~~~a~~~a~~~ 212 (319)
.--.|......- .+..++.||...++||.+||.|++++.|+.++...+.. . ...+|+..-+..+.+.
T Consensus 9 ~~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~ 88 (587)
T 3ky9_A 9 QCTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEK 88 (587)
T ss_dssp HHHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHH
Confidence 345688753211 12345789999999999999999999999997655542 1 2268999989888556
Q ss_pred CCCCC--CCCcccccCCCCCChhhHHHHHHHHH
Q psy4004 213 LDIPR--MLDPEDLINTPKPDERAIMTYVSCYY 243 (319)
Q Consensus 213 lgip~--ll~~eD~~~~~~pDe~si~~yls~l~ 243 (319)
+|+|. +..+.|+.+ .-|-..|+..|..|-
T Consensus 89 ~g~~~~~~f~~~Dl~~--~~~~~~V~~~l~~l~ 119 (587)
T 3ky9_A 89 FGLKRSELFEAFDLFD--VQDFGKVIYTLSALS 119 (587)
T ss_dssp TCCCTTSSCCHHHHHT--CSCHHHHHHHHHHHH
T ss_pred cCCCHHHcCCchhhhc--cCCcchHHHHHHHHh
Confidence 99996 799999875 345566666665553
No 79
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=94.12 E-value=0.097 Score=43.70 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcccCCCccchHHHhhhHHHHHHHHHHhcCCCCCCC-----C--CCCchhhHhhhHHHHHHHHHh
Q psy4004 30 HLLTFTAWCNSHLRKAGTAIENIEEDFRNGLKLMLLLEVISGETLPKP-----D--RGKMRFHKIANVNKALDFIAS 99 (319)
Q Consensus 30 q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~-----~--~~~~r~~~ieNv~~aL~~lk~ 99 (319)
...++..|+|..-. ..++.+ ++||.||+.|.+++..|.+.....+ . .+....-++.|+...++-+.+
T Consensus 10 ~~~aLl~W~~tf~~--~~~~~~-~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~ 83 (164)
T 1wix_A 10 LCDSLIIWLQTFKT--ASPCQD-VKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS 83 (164)
T ss_dssp HHHHHHHHHTTCCC--SSCCCS-HHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CCCcCc-HHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHH
Confidence 35789999999632 334555 5899999999999999999876421 1 112334577788777775543
No 80
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=86.04 E-value=0.36 Score=40.18 Aligned_cols=72 Identities=15% Similarity=0.348 Sum_probs=46.8
Q ss_pred hhhhhHHHHHHHhhhCCCCCcccccCCCCCcchHHHHHHHHhhCCCcccc---CCCCC---CC---hhhhHHHHHHHH--
Q psy4004 141 MTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPELIDY---HKLSK---DN---PLQNLNTAFDVA-- 209 (319)
Q Consensus 141 ~~~k~~LL~W~q~~~~~~~~v~V~nfs~sw~DG~al~aLi~~~~P~li~~---~~l~~---~~---~~~n~~~a~~~a-- 209 (319)
....++|+.|++.... ..++.+| .++.||.+|..++|.+-|+.++- ..+.. ++ ...|++..+...
T Consensus 8 ~~~~~aLl~W~~tf~~---~~~~~~~-~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~ 83 (164)
T 1wix_A 8 LPLCDSLIIWLQTFKT---ASPCQDV-KQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITS 83 (164)
T ss_dssp CHHHHHHHHHHTTCCC---SSCCCSH-HHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC---CCCcCcH-HHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHH
Confidence 4456799999976432 2245565 68999999999999999998753 22221 12 346777666543
Q ss_pred --HHhCCCC
Q psy4004 210 --EKYLDIP 216 (319)
Q Consensus 210 --~~~lgip 216 (319)
++.+|-+
T Consensus 84 Yy~e~L~~~ 92 (164)
T 1wix_A 84 YYHEFLGQQ 92 (164)
T ss_dssp HHHTTTCCC
T ss_pred HHHHHhcCc
Confidence 3445543
No 81
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=27.29 E-value=36 Score=25.17 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=42.6
Q ss_pred chhhHhhhHHHHHH-HHHhCCce----eeecCchhhhcc----chhhhhhHHHHHHHHhhhcccchh--hhhhhhHHHHH
Q psy4004 82 MRFHKIANVNKALD-FIASKGVK----LVSIGAEEIVDG----NLKMTLGMIWTIILRFAIQDISVE--EMTAKEGLLLW 150 (319)
Q Consensus 82 ~r~~~ieNv~~aL~-~lk~~gv~----l~~i~~~dIvdg----n~k~iLgLiW~li~~f~i~~i~~~--~~~~k~~LL~W 150 (319)
.++..+.|+..+++ .+.+.||. +...+|.+.+.. +....+.++|+|.- .++.+.-. ....|..|+.|
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~~~L~aL~g--Ai~G~~w~~l~~~~K~~L~~~ 81 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALEG--AVQGIRWHGLDEAKKIELKKF 81 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHH--HHHTSCGGGSCHHHHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHHH--HHcCCCHHHCCHHHHHHHHHH
Confidence 46778889888774 56677886 233455443321 34445578887743 23332221 34568899999
Q ss_pred HHhh
Q psy4004 151 CQRK 154 (319)
Q Consensus 151 ~q~~ 154 (319)
++..
T Consensus 82 ~~~~ 85 (93)
T 3bqs_A 82 HQSL 85 (93)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 82
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=20.45 E-value=80 Score=25.08 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHhhhHH-----HHHHHHHHhcCCCCCC---CC---CCCchhhHhhhHHHHH
Q psy4004 26 HAKSHLLTFTAWCNSHLRKAGTAIENIEEDFRNGL-----KLMLLLEVISGETLPK---PD---RGKMRFHKIANVNKAL 94 (319)
Q Consensus 26 ~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dl~DGv-----~L~~Lle~l~~~~~~~---~~---~~~~r~~~ieNv~~aL 94 (319)
-...|...+..|+..+ |..| .++.|...|. -|.+|++.+..+.+.. .. -+++..+.+ .
T Consensus 19 sl~~Q~~~l~~~~~~~----g~~v-~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv~~ldRL~R~~~~~l------~ 87 (154)
T 3lhk_A 19 DLERQIQLIKSYAEEN----GWDI-QILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVIIAYPDRLTRFGFETL------K 87 (154)
T ss_dssp HHHHHHHHHHHHHHHT----TCCC-EEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEESSHHHHCSSCHHHH------H
T ss_pred CHHHHHHHHHHHHHHC----CCEE-EEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEEEeCCcccccHHHHH------H
Confidence 5677889999998764 4455 6666665665 4888888887764321 10 012222222 2
Q ss_pred HHHHhCCceeeecCchhhhccchhhhhhHHHHHHHHhhhcccchhhhhhhhHHHHHHHhhhC
Q psy4004 95 DFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQRKTA 156 (319)
Q Consensus 95 ~~lk~~gv~l~~i~~~dIvdgn~k~iLgLiW~li~~f~i~~i~~~~~~~k~~LL~W~q~~~~ 156 (319)
..++..||.+..+.- |-.+..-++++.++-. +-.|.-..++ +.....+.++..+...+.
T Consensus 88 ~~l~~~gv~~~~~~~-d~~~~~~~l~~~i~~~-~ae~e~~~i~-~Rt~~~kk~~~~~~~~~~ 146 (154)
T 3lhk_A 88 EFFKSYGTEIVIINK-KHKTPQEELVEDLITI-VSHFAGKLYG-MHSHKYKKLTKTVKEIVR 146 (154)
T ss_dssp HHHHHTTCEEEESCS-SCCCCHHHHHHHHHHH-HHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCEEEEEeC-CCCCcHHHHHHHHHHH-HHHHHHHHHh-hhhHHHHHHHHHHHHHHh
Confidence 568889999887665 4444445555555443 3334333332 233344556666555443
No 83
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=20.24 E-value=75 Score=23.39 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=42.2
Q ss_pred chhhHhhhHHHHHH-HHHhCCce----eeecCchhhhc----cchhhhhhHHHHHHHHhhhcccchhhhhhhhHHHHHHH
Q psy4004 82 MRFHKIANVNKALD-FIASKGVK----LVSIGAEEIVD----GNLKMTLGMIWTIILRFAIQDISVEEMTAKEGLLLWCQ 152 (319)
Q Consensus 82 ~r~~~ieNv~~aL~-~lk~~gv~----l~~i~~~dIvd----gn~k~iLgLiW~li~~f~i~~i~~~~~~~k~~LL~W~q 152 (319)
++...+.|+..+++ .+...||. +..++|.+.+- -+....+.++|+|.---+=.....-....|..|..|.+
T Consensus 4 ~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~~~~~~~~~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~ 83 (93)
T 3mab_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALEGAVQGIRWHGLDEAKKIELKKFHQ 83 (93)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCcHHHCCHHHHHHHHHHHH
Confidence 35677888888774 56677886 33455554332 23455567788776432211111113456788999987
Q ss_pred hh
Q psy4004 153 RK 154 (319)
Q Consensus 153 ~~ 154 (319)
..
T Consensus 84 ~l 85 (93)
T 3mab_A 84 SL 85 (93)
T ss_dssp HH
T ss_pred Hh
Confidence 64
Done!